Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028160.t1 | RHN42365.1 | 97.8 | 223 | 5 | 0 | 1 | 223 | 1 | 223 | 2.80E-116 | 427.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028160.t1 | Q9LJQ5 | 45.9 | 220 | 116 | 2 | 6 | 223 | 7 | 225 | 7.9e-51 | 201.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028160.t1 | A0A396GU97 | 97.8 | 223 | 5 | 0 | 1 | 223 | 1 | 223 | 2.0e-116 | 427.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene028160 | MS.gene038238 | PPI |
MS.gene028160 | MS.gene22220 | PPI |
MS.gene028160 | MS.gene46954 | PPI |
MS.gene028160 | MS.gene019156 | PPI |
MS.gene028160 | MS.gene47993 | PPI |
MS.gene028160 | MS.gene017030 | PPI |
MS.gene028160 | MS.gene47676 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028160.t1 | MTR_1g109630 | 46.429 | 196 | 101 | 1 | 26 | 221 | 13 | 204 | 1.29e-62 | 194 |
MS.gene028160.t1 | MTR_8g099060 | 35.821 | 201 | 129 | 0 | 21 | 221 | 58 | 258 | 9.56e-51 | 166 |
MS.gene028160.t1 | MTR_3g449880 | 37.949 | 195 | 121 | 0 | 9 | 203 | 31 | 225 | 1.01e-48 | 160 |
MS.gene028160.t1 | MTR_5g090340 | 40.500 | 200 | 111 | 2 | 21 | 215 | 87 | 283 | 4.44e-48 | 159 |
MS.gene028160.t1 | MTR_5g090340 | 40.609 | 197 | 115 | 1 | 21 | 215 | 90 | 286 | 4.80e-48 | 159 |
MS.gene028160.t1 | MTR_8g028450 | 37.745 | 204 | 123 | 1 | 21 | 220 | 62 | 265 | 3.46e-46 | 154 |
MS.gene028160.t1 | MTR_1g099500 | 32.110 | 218 | 146 | 1 | 4 | 219 | 32 | 249 | 3.55e-43 | 146 |
MS.gene028160.t1 | MTR_3g449880 | 37.952 | 166 | 103 | 0 | 38 | 203 | 38 | 203 | 2.83e-38 | 132 |
MS.gene028160.t1 | MTR_3g062910 | 26.009 | 223 | 149 | 2 | 3 | 211 | 17 | 237 | 2.95e-32 | 117 |
MS.gene028160.t1 | MTR_4g014700 | 28.502 | 207 | 148 | 0 | 17 | 223 | 3 | 209 | 1.16e-27 | 104 |
MS.gene028160.t1 | MTR_5g018250 | 30.303 | 198 | 127 | 2 | 33 | 222 | 29 | 223 | 2.13e-22 | 91.3 |
MS.gene028160.t1 | MTR_1g107445 | 29.208 | 202 | 143 | 0 | 20 | 221 | 1 | 202 | 2.14e-22 | 90.9 |
MS.gene028160.t1 | MTR_6g012460 | 29.730 | 185 | 130 | 0 | 37 | 221 | 13 | 197 | 8.07e-21 | 86.7 |
MS.gene028160.t1 | MTR_5g018080 | 26.812 | 138 | 101 | 0 | 40 | 177 | 18 | 155 | 1.42e-15 | 71.6 |
MS.gene028160.t1 | MTR_5g018190 | 27.397 | 146 | 106 | 0 | 41 | 186 | 284 | 429 | 1.73e-15 | 75.1 |
MS.gene028160.t1 | MTR_5g018110 | 27.465 | 142 | 103 | 0 | 40 | 181 | 344 | 485 | 6.87e-15 | 73.2 |
MS.gene028160.t1 | MTR_6g012460 | 31.818 | 132 | 90 | 0 | 37 | 168 | 13 | 144 | 7.48e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028160.t1 | AT3G18260 | 48.416 | 221 | 111 | 2 | 5 | 223 | 6 | 225 | 1.57e-79 | 238 |
MS.gene028160.t1 | AT2G46170 | 40.094 | 212 | 127 | 0 | 9 | 220 | 40 | 251 | 3.72e-53 | 172 |
MS.gene028160.t1 | AT4G23630 | 35.821 | 201 | 129 | 0 | 21 | 221 | 73 | 273 | 2.34e-48 | 160 |
MS.gene028160.t1 | AT4G23630 | 35.821 | 201 | 129 | 0 | 21 | 221 | 73 | 273 | 2.34e-48 | 160 |
MS.gene028160.t1 | AT3G10260 | 31.963 | 219 | 149 | 0 | 3 | 221 | 27 | 245 | 4.96e-48 | 158 |
MS.gene028160.t1 | AT3G10260 | 31.963 | 219 | 149 | 0 | 3 | 221 | 27 | 245 | 4.96e-48 | 158 |
MS.gene028160.t1 | AT3G10260 | 31.963 | 219 | 149 | 0 | 3 | 221 | 47 | 265 | 9.70e-48 | 158 |
MS.gene028160.t1 | AT4G11220 | 34.328 | 201 | 132 | 0 | 21 | 221 | 69 | 269 | 1.54e-47 | 157 |
MS.gene028160.t1 | AT3G61560 | 37.000 | 200 | 126 | 0 | 21 | 220 | 52 | 251 | 7.15e-46 | 153 |
MS.gene028160.t1 | AT3G61560 | 37.000 | 200 | 126 | 0 | 21 | 220 | 52 | 251 | 7.15e-46 | 153 |
MS.gene028160.t1 | AT5G41600 | 32.195 | 205 | 135 | 1 | 21 | 221 | 52 | 256 | 2.09e-42 | 144 |
MS.gene028160.t1 | AT1G64090 | 34.171 | 199 | 127 | 1 | 21 | 215 | 48 | 246 | 7.04e-42 | 142 |
MS.gene028160.t1 | AT1G64090 | 31.481 | 216 | 128 | 2 | 21 | 216 | 48 | 263 | 4.06e-38 | 133 |
MS.gene028160.t1 | AT4G01230 | 34.783 | 207 | 132 | 1 | 7 | 213 | 40 | 243 | 5.44e-37 | 130 |
MS.gene028160.t1 | AT1G68230 | 33.175 | 211 | 135 | 2 | 13 | 221 | 7 | 213 | 8.59e-37 | 128 |
MS.gene028160.t1 | AT4G01230 | 33.981 | 206 | 131 | 2 | 8 | 213 | 41 | 241 | 9.14e-34 | 121 |
MS.gene028160.t1 | AT3G61560 | 40.136 | 147 | 88 | 0 | 21 | 167 | 52 | 198 | 5.35e-32 | 115 |
MS.gene028160.t1 | AT2G46170 | 40.876 | 137 | 81 | 0 | 9 | 145 | 40 | 176 | 2.30e-29 | 108 |
MS.gene028160.t1 | AT3G10915 | 25.822 | 213 | 157 | 1 | 9 | 220 | 12 | 224 | 3.53e-25 | 99.0 |
MS.gene028160.t1 | AT3G54120 | 31.250 | 192 | 132 | 0 | 14 | 205 | 1 | 192 | 1.47e-24 | 96.7 |
MS.gene028160.t1 | AT3G10915 | 26.425 | 193 | 142 | 0 | 28 | 220 | 57 | 249 | 1.74e-24 | 97.8 |
MS.gene028160.t1 | AT3G19460 | 31.073 | 177 | 120 | 2 | 29 | 204 | 14 | 189 | 7.31e-24 | 94.7 |
MS.gene028160.t1 | AT3G19460 | 31.073 | 177 | 120 | 2 | 29 | 204 | 14 | 189 | 7.31e-24 | 94.7 |
MS.gene028160.t1 | AT3G19460 | 31.073 | 177 | 120 | 2 | 29 | 204 | 14 | 189 | 7.31e-24 | 94.7 |
MS.gene028160.t1 | AT3G10915 | 25.701 | 214 | 157 | 2 | 9 | 220 | 12 | 225 | 1.93e-23 | 94.4 |
MS.gene028160.t1 | AT2G15280 | 25.888 | 197 | 146 | 0 | 25 | 221 | 2 | 198 | 3.31e-23 | 93.2 |
MS.gene028160.t1 | AT1G68230 | 34.810 | 158 | 97 | 2 | 13 | 168 | 7 | 160 | 2.74e-22 | 89.7 |
MS.gene028160.t1 | AT3G19460 | 28.634 | 227 | 120 | 4 | 29 | 221 | 14 | 232 | 1.12e-19 | 84.3 |
MS.gene028160.t1 | AT3G19460 | 28.634 | 227 | 120 | 4 | 29 | 221 | 14 | 232 | 1.12e-19 | 84.3 |
MS.gene028160.t1 | AT3G10915 | 24.868 | 189 | 142 | 0 | 32 | 220 | 4 | 192 | 2.31e-19 | 82.8 |
MS.gene028160.t1 | AT3G10915 | 25.137 | 183 | 137 | 0 | 38 | 220 | 9 | 191 | 3.37e-19 | 82.4 |
MS.gene028160.t1 | AT3G10915 | 23.305 | 236 | 157 | 3 | 9 | 220 | 12 | 247 | 2.31e-18 | 81.3 |
MS.gene028160.t1 | AT3G19460 | 26.941 | 219 | 118 | 3 | 37 | 221 | 6 | 216 | 1.84e-15 | 72.8 |
MS.gene028160.t1 | AT3G19460 | 26.941 | 219 | 118 | 3 | 37 | 221 | 6 | 216 | 1.84e-15 | 72.8 |
MS.gene028160.t1 | AT2G23640 | 23.404 | 188 | 141 | 1 | 37 | 221 | 16 | 203 | 3.66e-13 | 66.2 |
Find 40 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTTGGGATAACATTAATT+TGG | 0.217906 | 4.2:-15842488 | MS.gene028160:CDS |
GAAGAAACATTCTTAGTAAT+TGG | 0.228787 | 4.2:+15841889 | None:intergenic |
ATTCTTGTAAAACAGTTTCT+AGG | 0.234459 | 4.2:+15841955 | None:intergenic |
TTTATCAATTTGCTATATAT+TGG | 0.250297 | 4.2:-15841686 | MS.gene028160:intron |
TCTGATTCTGATGATGAAAT+TGG | 0.270683 | 4.2:-15843018 | MS.gene028160:CDS |
AAGCCACTTCATGAAATTCT+TGG | 0.343549 | 4.2:-15842964 | MS.gene028160:CDS |
TGTACTCAACAACCTCAAAT+AGG | 0.360635 | 4.2:+15842463 | None:intergenic |
CTCTATATATTGTCAGTGAT+TGG | 0.375744 | 4.2:-15841722 | MS.gene028160:CDS |
GGACCTACCAATATTTCTTC+TGG | 0.380270 | 4.2:-15841850 | MS.gene028160:intron |
TATGATACCAGAAGAAATAT+TGG | 0.384599 | 4.2:+15841843 | None:intergenic |
ATTAATTTGGTTCCTATTTG+AGG | 0.387542 | 4.2:-15842475 | MS.gene028160:CDS |
GAAATTCTTGGTGGAGGAAA+AGG | 0.413815 | 4.2:-15842952 | MS.gene028160:intron |
TAGTGGCTGATGTGTTGTTA+TGG | 0.416856 | 4.2:-15842539 | MS.gene028160:CDS |
TGAGGAAGAAATTAACAATC+TGG | 0.442280 | 4.2:-15841436 | MS.gene028160:CDS |
CAAATTGATAAAGTTGAAGT+AGG | 0.453688 | 4.2:+15841697 | None:intergenic |
CACTTGCAGATATCTTGAAA+TGG | 0.455203 | 4.2:-15842377 | MS.gene028160:intron |
GGACAATGAAAGCAAGCTCT+TGG | 0.461016 | 4.2:+15841925 | None:intergenic |
TCATATCGATCATACACAAT+TGG | 0.467477 | 4.2:+15841456 | None:intergenic |
TATCACAAGCATTGTGGTGA+TGG | 0.477503 | 4.2:+15842413 | None:intergenic |
ATCTGAGGAAGAAATATAGA+AGG | 0.482017 | 4.2:-15841395 | MS.gene028160:CDS |
CAATGCTTGTGATATACCTA+TGG | 0.488547 | 4.2:-15842404 | MS.gene028160:CDS |
GAAGAAATTAACAATCTGGC+TGG | 0.496033 | 4.2:-15841432 | MS.gene028160:CDS |
CCACCAAGAATTTCATGAAG+TGG | 0.510908 | 4.2:+15842961 | None:intergenic |
CCACTTCATGAAATTCTTGG+TGG | 0.515383 | 4.2:-15842961 | MS.gene028160:CDS |
GTAATTGGTTCAATCTTCTG+TGG | 0.519552 | 4.2:+15841904 | None:intergenic |
CTTCATGAAATTCTTGGTGG+AGG | 0.540204 | 4.2:-15842958 | MS.gene028160:CDS |
TGGCTGATGTGTTGTTATGG+AGG | 0.568189 | 4.2:-15842536 | MS.gene028160:CDS |
GGCTGATGTGTTGTTATGGA+GGG | 0.580296 | 4.2:-15842535 | MS.gene028160:CDS |
CAATCACTGACAATATATAG+AGG | 0.583298 | 4.2:+15841723 | None:intergenic |
ATGTTTCTTCACATATCGTG+TGG | 0.600261 | 4.2:-15841876 | MS.gene028160:CDS |
TATCTGCAAGTGTAGACCAT+AGG | 0.602747 | 4.2:+15842388 | None:intergenic |
AATTTCATCATCAGAATCAG+AGG | 0.612944 | 4.2:+15843020 | None:intergenic |
TCTTCACATATCGTGTGGAA+CGG | 0.615548 | 4.2:-15841871 | MS.gene028160:CDS |
AATTCCACGAGGACCAGTGA+AGG | 0.618414 | 4.2:-15841349 | MS.gene028160:CDS |
AATTGTGTATGATCGATATG+AGG | 0.624479 | 4.2:-15841454 | MS.gene028160:CDS |
ATACCAGAAGAAATATTGGT+AGG | 0.628139 | 4.2:+15841847 | None:intergenic |
GACATGTCATAGTAGATCTG+AGG | 0.630232 | 4.2:-15841410 | MS.gene028160:CDS |
TAGGTATATCACAAGCATTG+TGG | 0.704281 | 4.2:+15842407 | None:intergenic |
AAAACAGTTTCTAGGAACTG+CGG | 0.706304 | 4.2:+15841963 | None:intergenic |
TATCTCAACAAAATTCCACG+AGG | 0.793532 | 4.2:-15841360 | MS.gene028160:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACTTAGTATATATATTTAT+TGG | + | chr4.2:15842851-15842870 | None:intergenic | 10.0% |
!! | ATAAATTTAAAAATGTCATT+TGG | + | chr4.2:15842337-15842356 | None:intergenic | 10.0% |
!! | AGTTACAATTTAAGAATTTA+AGG | + | chr4.2:15841621-15841640 | None:intergenic | 15.0% |
!! | GAAAATAAGTTTAAAAAGAA+AGG | + | chr4.2:15842613-15842632 | None:intergenic | 15.0% |
!! | GCTATTAAAAAAATGAATTA+AGG | - | chr4.2:15842730-15842749 | MS.gene028160:intron | 15.0% |
!! | TTATTAATTCACAATTATGA+GGG | + | chr4.2:15842037-15842056 | None:intergenic | 15.0% |
!! | TTTATTAATTCACAATTATG+AGG | + | chr4.2:15842038-15842057 | None:intergenic | 15.0% |
!!! | TAAATTTTATTTTTCAGGAA+TGG | - | chr4.2:15842384-15842403 | MS.gene028160:CDS | 15.0% |
!!! | TGATTTTATTTTTGTGTATA+TGG | + | chr4.2:15841594-15841613 | None:intergenic | 15.0% |
!!! | TTTATCAATTTGCTATATAT+TGG | - | chr4.2:15842685-15842704 | MS.gene028160:intron | 15.0% |
!! | AAAAAAATGAATTAAGGAAG+AGG | - | chr4.2:15842736-15842755 | MS.gene028160:intron | 20.0% |
!! | ATGAATTGTTCATAATGATT+TGG | - | chr4.2:15841797-15841816 | MS.gene028160:intron | 20.0% |
!! | CCTGAAAAATAAAATTTAAC+AGG | + | chr4.2:15842382-15842401 | None:intergenic | 20.0% |
!! | GTGAATTAATAAAATGTTTG+AGG | - | chr4.2:15842045-15842064 | MS.gene028160:intron | 20.0% |
!! | TAAACTAATTAGAATGATAG+TGG | - | chr4.2:15842286-15842305 | MS.gene028160:intron | 20.0% |
!! | TTAAATTGTAACTTACTCTA+TGG | - | chr4.2:15841628-15841647 | MS.gene028160:intron | 20.0% |
!!! | ATATGTAACAGCTTTTATTA+AGG | - | chr4.2:15842244-15842263 | MS.gene028160:intron | 20.0% |
!!! | CCTGTTAAATTTTATTTTTC+AGG | - | chr4.2:15842379-15842398 | MS.gene028160:CDS | 20.0% |
!!! | CTATCATTCTAATTAGTTTA+TGG | + | chr4.2:15842286-15842305 | None:intergenic | 20.0% |
! | ATTCTTGTAAAACAGTTTCT+AGG | + | chr4.2:15842419-15842438 | None:intergenic | 25.0% |
! | CAAATTGATAAAGTTGAAGT+AGG | + | chr4.2:15842677-15842696 | None:intergenic | 25.0% |
! | CACAAATACTAACACTTTAT+TGG | - | chr4.2:15842555-15842574 | MS.gene028160:intron | 25.0% |
! | GAAGAAACATTCTTAGTAAT+TGG | + | chr4.2:15842485-15842504 | None:intergenic | 25.0% |
! | GGAAAATGAAAGTTAACAAA+AGG | - | chr4.2:15841533-15841552 | MS.gene028160:intron | 25.0% |
! | TATGATACCAGAAGAAATAT+TGG | + | chr4.2:15842531-15842550 | None:intergenic | 25.0% |
! | TATTGAGGCAAATAAGATAA+TGG | + | chr4.2:15842167-15842186 | None:intergenic | 25.0% |
!! | ATTAATTTGGTTCCTATTTG+AGG | - | chr4.2:15841896-15841915 | MS.gene028160:CDS | 25.0% |
!!! | AAAATGTCATTTGGTTTGTA+AGG | + | chr4.2:15842328-15842347 | None:intergenic | 25.0% |
!!! | TTCATGCTATTTTTGTTTGT+GGG | + | chr4.2:15841513-15841532 | None:intergenic | 25.0% |
AAACCTTATCAACCATAAAG+AGG | + | chr4.2:15842876-15842895 | None:intergenic | 30.0% | |
AATTGTGTATGATCGATATG+AGG | - | chr4.2:15842917-15842936 | MS.gene028160:intron | 30.0% | |
AATTTCATCATCAGAATCAG+AGG | + | chr4.2:15841354-15841373 | None:intergenic | 30.0% | |
ATACCAGAAGAAATATTGGT+AGG | + | chr4.2:15842527-15842546 | None:intergenic | 30.0% | |
ATACTAAGTTGTCCTCTTTA+TGG | - | chr4.2:15842861-15842880 | MS.gene028160:intron | 30.0% | |
ATCTGAGGAAGAAATATAGA+AGG | - | chr4.2:15842976-15842995 | MS.gene028160:CDS | 30.0% | |
CAATCACTGACAATATATAG+AGG | + | chr4.2:15842651-15842670 | None:intergenic | 30.0% | |
CACAAACAAAAATAGCATGA+AGG | - | chr4.2:15841512-15841531 | MS.gene028160:intron | 30.0% | |
CTCTATATATTGTCAGTGAT+TGG | - | chr4.2:15842649-15842668 | MS.gene028160:intron | 30.0% | |
GCCAAAAAGTAATTATAGTC+CGG | - | chr4.2:15842099-15842118 | MS.gene028160:intron | 30.0% | |
GTGTTCAAAATGACTTATTG+AGG | + | chr4.2:15842182-15842201 | None:intergenic | 30.0% | |
TCATATCGATCATACACAAT+TGG | + | chr4.2:15842918-15842937 | None:intergenic | 30.0% | |
TGAGGAAGAAATTAACAATC+TGG | - | chr4.2:15842935-15842954 | MS.gene028160:intron | 30.0% | |
TGCTTGGGATAACATTAATT+TGG | - | chr4.2:15841883-15841902 | MS.gene028160:CDS | 30.0% | |
TTTAACAGGCAAAGAAAATG+TGG | + | chr4.2:15842368-15842387 | None:intergenic | 30.0% | |
! | CAAATAAGATAATGGTAGGA+TGG | + | chr4.2:15842159-15842178 | None:intergenic | 30.0% |
! | TATTTTCCCTTGTATTTTGC+CGG | - | chr4.2:15841667-15841686 | MS.gene028160:intron | 30.0% |
! | TCTGATTCTGATGATGAAAT+TGG | - | chr4.2:15841353-15841372 | MS.gene028160:CDS | 30.0% |
!! | TCCGGACTATAATTACTTTT+TGG | + | chr4.2:15842103-15842122 | None:intergenic | 30.0% |
!! | TTTGGTTGATAAATGTGTAG+TGG | - | chr4.2:15841815-15841834 | MS.gene028160:intron | 30.0% |
!!! | CTTCATGCTATTTTTGTTTG+TGG | + | chr4.2:15841514-15841533 | None:intergenic | 30.0% |
!!! | TCATGCTATTTTTGTTTGTG+GGG | + | chr4.2:15841512-15841531 | None:intergenic | 30.0% |
AAGCCACTTCATGAAATTCT+TGG | - | chr4.2:15841407-15841426 | MS.gene028160:CDS | 35.0% | |
ACATGAGCTGATAACTTTGA+AGG | - | chr4.2:15842200-15842219 | MS.gene028160:intron | 35.0% | |
ATGTTTCTTCACATATCGTG+TGG | - | chr4.2:15842495-15842514 | MS.gene028160:CDS | 35.0% | |
ATTTGTTCCGGCAAAATACA+AGG | + | chr4.2:15841677-15841696 | None:intergenic | 35.0% | |
CAATGCTTGTGATATACCTA+TGG | - | chr4.2:15841967-15841986 | MS.gene028160:CDS | 35.0% | |
CACTTGCAGATATCTTGAAA+TGG | - | chr4.2:15841994-15842013 | MS.gene028160:intron | 35.0% | |
GAAGAAATTAACAATCTGGC+TGG | - | chr4.2:15842939-15842958 | MS.gene028160:intron | 35.0% | |
GTAAGAGAAAGTGACAAAGA+TGG | + | chr4.2:15841449-15841468 | None:intergenic | 35.0% | |
TATCTCAACAAAATTCCACG+AGG | - | chr4.2:15843011-15843030 | MS.gene028160:CDS | 35.0% | |
TGTACTCAACAACCTCAAAT+AGG | + | chr4.2:15841911-15841930 | None:intergenic | 35.0% | |
TTATAGTCCGGACTCAATTA+AGG | - | chr4.2:15842111-15842130 | MS.gene028160:intron | 35.0% | |
TTTGTTCCGGCAAAATACAA+GGG | + | chr4.2:15841676-15841695 | None:intergenic | 35.0% | |
! | AAAACAGTTTCTAGGAACTG+CGG | + | chr4.2:15842411-15842430 | None:intergenic | 35.0% |
! | GAGGCAAATAAGATAATGGT+AGG | + | chr4.2:15842163-15842182 | None:intergenic | 35.0% |
! | GTAATTGGTTCAATCTTCTG+TGG | + | chr4.2:15842470-15842489 | None:intergenic | 35.0% |
! | GTGATTTTCTTTTCCTTCAC+TGG | + | chr4.2:15843038-15843057 | None:intergenic | 35.0% |
! | TAGGTATATCACAAGCATTG+TGG | + | chr4.2:15841967-15841986 | None:intergenic | 35.0% |
! | TATTTTGCCGGAACAAATGA+AGG | - | chr4.2:15841679-15841698 | MS.gene028160:intron | 35.0% |
! | TGTCCTCTTTATGGTTGATA+AGG | - | chr4.2:15842870-15842889 | MS.gene028160:intron | 35.0% |
AGTGAGTCCTTAATTGAGTC+CGG | + | chr4.2:15842121-15842140 | None:intergenic | 40.0% | |
CCACCAAGAATTTCATGAAG+TGG | + | chr4.2:15841413-15841432 | None:intergenic | 40.0% | |
CCACTTCATGAAATTCTTGG+TGG | - | chr4.2:15841410-15841429 | MS.gene028160:CDS | 40.0% | |
CCTAACACCTTCATTTGTTC+CGG | + | chr4.2:15841689-15841708 | None:intergenic | 40.0% | |
CTTCATGAAATTCTTGGTGG+AGG | - | chr4.2:15841413-15841432 | MS.gene028160:CDS | 40.0% | |
GAAATTCTTGGTGGAGGAAA+AGG | - | chr4.2:15841419-15841438 | MS.gene028160:CDS | 40.0% | |
GACATGTCATAGTAGATCTG+AGG | - | chr4.2:15842961-15842980 | MS.gene028160:CDS | 40.0% | |
GCAACATATATGCATGCTAG+TGG | + | chr4.2:15842081-15842100 | None:intergenic | 40.0% | |
GGACCTACCAATATTTCTTC+TGG | - | chr4.2:15842521-15842540 | MS.gene028160:CDS | 40.0% | |
TATCTGCAAGTGTAGACCAT+AGG | + | chr4.2:15841986-15842005 | None:intergenic | 40.0% | |
TCTTCACATATCGTGTGGAA+CGG | - | chr4.2:15842500-15842519 | MS.gene028160:CDS | 40.0% | |
! | TAGTGGCTGATGTGTTGTTA+TGG | - | chr4.2:15841832-15841851 | MS.gene028160:intron | 40.0% |
! | TATCACAAGCATTGTGGTGA+TGG | + | chr4.2:15841961-15841980 | None:intergenic | 40.0% |
! | TATCAGCTGCGTTTTTGCTT+GGG | - | chr4.2:15841868-15841887 | MS.gene028160:CDS | 40.0% |
! | TCATGAAGTGGCTTTTCATG+TGG | + | chr4.2:15841401-15841420 | None:intergenic | 40.0% |
GGACAATGAAAGCAAGCTCT+TGG | + | chr4.2:15842449-15842468 | None:intergenic | 45.0% | |
! | GGCTGATGTGTTGTTATGGA+GGG | - | chr4.2:15841836-15841855 | MS.gene028160:intron | 45.0% |
! | GTATCAGCTGCGTTTTTGCT+TGG | - | chr4.2:15841867-15841886 | MS.gene028160:CDS | 45.0% |
! | TGGCTGATGTGTTGTTATGG+AGG | - | chr4.2:15841835-15841854 | MS.gene028160:intron | 45.0% |
!! | CCGGAACAAATGAAGGTGTT+AGG | - | chr4.2:15841686-15841705 | MS.gene028160:intron | 45.0% |
!!! | ATTTTATTTATTATTTGATT+TGG | - | chr4.2:15841469-15841488 | MS.gene028160:CDS | 5.0% |
AATTCCACGAGGACCAGTGA+AGG | - | chr4.2:15843022-15843041 | MS.gene028160:CDS | 50.0% | |
! | TTTTCCTTCACTGGTCCTCG+TGG | + | chr4.2:15843029-15843048 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 15841332 | 15843061 | 15841332 | ID=MS.gene028160 |
chr4.2 | mRNA | 15841332 | 15843061 | 15841332 | ID=MS.gene028160.t1;Parent=MS.gene028160 |
chr4.2 | exon | 15842953 | 15843061 | 15842953 | ID=MS.gene028160.t1.exon1;Parent=MS.gene028160.t1 |
chr4.2 | CDS | 15842953 | 15843061 | 15842953 | ID=cds.MS.gene028160.t1;Parent=MS.gene028160.t1 |
chr4.2 | exon | 15842378 | 15842558 | 15842378 | ID=MS.gene028160.t1.exon2;Parent=MS.gene028160.t1 |
chr4.2 | CDS | 15842378 | 15842558 | 15842378 | ID=cds.MS.gene028160.t1;Parent=MS.gene028160.t1 |
chr4.2 | exon | 15841851 | 15841992 | 15841851 | ID=MS.gene028160.t1.exon3;Parent=MS.gene028160.t1 |
chr4.2 | CDS | 15841851 | 15841992 | 15841851 | ID=cds.MS.gene028160.t1;Parent=MS.gene028160.t1 |
chr4.2 | exon | 15841687 | 15841756 | 15841687 | ID=MS.gene028160.t1.exon4;Parent=MS.gene028160.t1 |
chr4.2 | CDS | 15841687 | 15841756 | 15841687 | ID=cds.MS.gene028160.t1;Parent=MS.gene028160.t1 |
chr4.2 | exon | 15841332 | 15841501 | 15841332 | ID=MS.gene028160.t1.exon5;Parent=MS.gene028160.t1 |
chr4.2 | CDS | 15841332 | 15841501 | 15841332 | ID=cds.MS.gene028160.t1;Parent=MS.gene028160.t1 |
Gene Sequence |
Protein sequence |