Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017270.t1 | AES99055.1 | 99 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 5.80E-108 | 400.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017270.t1 | Q9LEV3 | 81.6 | 206 | 37 | 1 | 1 | 205 | 1 | 206 | 1.1e-91 | 337.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017270.t1 | G7K5X3 | 99.0 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 4.1e-108 | 400.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017270 | MS.gene051416 | PPI |
| MS.gene017270 | MS.gene065401 | PPI |
| MS.gene017270 | MS.gene029745 | PPI |
| MS.gene017270 | MS.gene47429 | PPI |
| MS.gene017270 | MS.gene065402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017270.t1 | MTR_5g076080 | 99.024 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 1.28e-151 | 421 |
| MS.gene017270.t1 | MTR_5g076080 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 5.96e-151 | 417 |
| MS.gene017270.t1 | MTR_5g076010 | 91.597 | 119 | 10 | 0 | 1 | 119 | 1 | 119 | 2.17e-70 | 224 |
| MS.gene017270.t1 | MTR_3g111940 | 48.792 | 207 | 101 | 4 | 1 | 205 | 1 | 204 | 6.16e-59 | 184 |
| MS.gene017270.t1 | MTR_6g037360 | 84.375 | 96 | 15 | 0 | 1 | 96 | 1 | 96 | 8.86e-55 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017270.t1 | AT5G10860 | 81.553 | 206 | 37 | 1 | 1 | 205 | 1 | 206 | 1.46e-124 | 350 |
| MS.gene017270.t1 | AT1G47271 | 47.594 | 187 | 96 | 2 | 19 | 205 | 8 | 192 | 1.35e-56 | 177 |
Find 62 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCGCAGAACTTTGGTATC+AGG | 0.270882 | 5.1:+58600105 | None:intergenic |
| ATCCCCGACCTTGGTGGACT+TGG | 0.359346 | 5.1:+58600462 | None:intergenic |
| CCTGAGGAAGATCATCGTTC+AGG | 0.387541 | 5.1:-58600494 | MS.gene017270:CDS |
| AAAAGGCAACTGGCTGCAAC+AGG | 0.388839 | 5.1:+58601168 | None:intergenic |
| GCAATTGATTTCTCCTCCCC+TGG | 0.398515 | 5.1:+58600865 | None:intergenic |
| GCGCTGATGGTTCATGGCTT+TGG | 0.403537 | 5.1:-58601055 | MS.gene017270:CDS |
| CGCTTGAATGCTTACATACA+AGG | 0.428996 | 5.1:-58599593 | MS.gene017270:CDS |
| TCAGACATCTTGCAAGGAAA+AGG | 0.429987 | 5.1:-58601083 | MS.gene017270:CDS |
| CATCCAAGTCCACCAAGGTC+GGG | 0.437806 | 5.1:-58600465 | MS.gene017270:CDS |
| GTAAAGGCGCTGATGGTTCA+TGG | 0.444659 | 5.1:-58601061 | MS.gene017270:CDS |
| CTGCATTGCTCGCAGAACTT+TGG | 0.445326 | 5.1:+58600098 | None:intergenic |
| GGGGAGGAGAAATCAATTGC+TGG | 0.452072 | 5.1:-58600862 | MS.gene017270:CDS |
| ATTTCCTTGTCATTTATGAC+AGG | 0.461486 | 5.1:+58599683 | None:intergenic |
| ACAAAACAATGTTGGTGCTT+TGG | 0.467003 | 5.1:-58600899 | MS.gene017270:CDS |
| TCAAACCGTGAAAAGGCAAC+TGG | 0.475093 | 5.1:+58601158 | None:intergenic |
| TGTTTATGATGCTGTCAAAT+CGG | 0.475200 | 5.1:-58601015 | MS.gene017270:intron |
| GCTTTGGTGGTCGTGAAACC+AGG | 0.480001 | 5.1:-58600883 | MS.gene017270:CDS |
| CGAGCAATGCAGCTGATGAC+TGG | 0.490351 | 5.1:-58600087 | MS.gene017270:intron |
| CTCGCAGAACTTTGGTATCA+GGG | 0.492406 | 5.1:+58600106 | None:intergenic |
| CATAATATCCCCGACCTTGG+TGG | 0.492904 | 5.1:+58600456 | None:intergenic |
| TGCTACACCTGCTCGTATTG+AGG | 0.498372 | 5.1:-58601132 | MS.gene017270:CDS |
| ATGCTCGGCATGGTGTCCAT+TGG | 0.515005 | 5.1:-58599662 | MS.gene017270:CDS |
| GCTGGAATTATAACAGAAAG+AGG | 0.519325 | 5.1:-58600844 | MS.gene017270:intron |
| CTGAGGAAGATCATCGTTCA+GGG | 0.519832 | 5.1:-58600493 | MS.gene017270:CDS |
| AGCAGACTCAAACCGTGAAA+AGG | 0.527310 | 5.1:+58601151 | None:intergenic |
| AACAGTGGTTCATACCTCTT+CGG | 0.527383 | 5.1:+58600432 | None:intergenic |
| AAGGCAACTGGCTGCAACAG+GGG | 0.531751 | 5.1:+58601170 | None:intergenic |
| CCTGAACGATGATCTTCCTC+AGG | 0.533196 | 5.1:+58600494 | None:intergenic |
| TCATCCAAGTCCACCAAGGT+CGG | 0.552655 | 5.1:-58600466 | MS.gene017270:CDS |
| ATCCAAGTCCACCAAGGTCG+GGG | 0.557202 | 5.1:-58600464 | MS.gene017270:CDS |
| AAACAATGTTGGTGCTTTGG+TGG | 0.560729 | 5.1:-58600896 | MS.gene017270:CDS |
| ATCTTGCAAGGAAAAGGTAA+AGG | 0.561654 | 5.1:-58601077 | MS.gene017270:CDS |
| GGAAAAGGTAAAGGCGCTGA+TGG | 0.566636 | 5.1:-58601068 | MS.gene017270:CDS |
| TTGCAAGATGTCTGAAATTG+TGG | 0.570234 | 5.1:+58601091 | None:intergenic |
| CCATGCTCCTCAATACGAGC+AGG | 0.573052 | 5.1:+58601125 | None:intergenic |
| GGTCATAATATCCCCGACCT+TGG | 0.574226 | 5.1:+58600453 | None:intergenic |
| AGATGTTGTTCGTGCTGTCG+TGG | 0.574794 | 5.1:-58599639 | MS.gene017270:CDS |
| GATGTTGTTCGTGCTGTCGT+GGG | 0.578243 | 5.1:-58599638 | MS.gene017270:CDS |
| ACAATTTCAGACATCTTGCA+AGG | 0.588745 | 5.1:-58601089 | MS.gene017270:CDS |
| TTTCCTTGTCATTTATGACA+GGG | 0.591475 | 5.1:+58599684 | None:intergenic |
| ATAAATGACAAGGAAATGCT+CGG | 0.596746 | 5.1:-58599677 | MS.gene017270:CDS |
| CTTTGGTGGTCGTGAAACCA+GGG | 0.598133 | 5.1:-58600882 | MS.gene017270:CDS |
| AGCACGAACAACATCTCCAA+TGG | 0.603380 | 5.1:+58599646 | None:intergenic |
| CATCCCTGTCATAAATGACA+AGG | 0.612336 | 5.1:-58599687 | MS.gene017270:CDS |
| TATTAGACAGCCAAAATGCA+AGG | 0.612518 | 5.1:-58601266 | None:intergenic |
| CCTGCTCGTATTGAGGAGCA+TGG | 0.625826 | 5.1:-58601125 | MS.gene017270:CDS |
| ATCATAAACAGTGTCATCTG+TGG | 0.626836 | 5.1:+58601028 | None:intergenic |
| TGACAAGGAAATGCTCGGCA+TGG | 0.629220 | 5.1:-58599672 | MS.gene017270:CDS |
| CAGATGACACAAAACAATGT+TGG | 0.632418 | 5.1:-58600907 | MS.gene017270:CDS |
| GCTTGAATGCTTACATACAA+GGG | 0.636806 | 5.1:-58599592 | MS.gene017270:CDS |
| CTTGAATGCTTACATACAAG+GGG | 0.645653 | 5.1:-58599591 | MS.gene017270:CDS |
| TCGCAGAACTTTGGTATCAG+GGG | 0.648663 | 5.1:+58600107 | None:intergenic |
| CTTGTATGTAAGCATTCAAG+CGG | 0.650554 | 5.1:+58599594 | None:intergenic |
| AAAGGCAACTGGCTGCAACA+GGG | 0.653192 | 5.1:+58601169 | None:intergenic |
| CTTGATATCTAGATTACCTG+AGG | 0.657138 | 5.1:-58600510 | MS.gene017270:intron |
| CGGGGATATTATGACCGAAG+AGG | 0.658203 | 5.1:-58600446 | MS.gene017270:intron |
| GCAACAGGGGATTCACCATG+CGG | 0.686296 | 5.1:+58601183 | None:intergenic |
| GGTGGTCGTGAAACCAGGGG+AGG | 0.700076 | 5.1:-58600878 | MS.gene017270:CDS |
| TTTGGTGGTCGTGAAACCAG+GGG | 0.702988 | 5.1:-58600881 | MS.gene017270:CDS |
| AAGATCATCCAAGTCCACCA+AGG | 0.706227 | 5.1:-58600470 | MS.gene017270:CDS |
| TAGACAGCCAAAATGCAAGG+AGG | 0.707266 | 5.1:-58601263 | None:intergenic |
| TTGAATGCTTACATACAAGG+GGG | 0.750705 | 5.1:-58599590 | MS.gene017270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAACAATATGATTTATAT+TGG | - | chr5.1:58600137-58600156 | MS.gene017270:intron | 15.0% |
| !! | AAATCGATAATTTGAAAATG+TGG | + | chr5.1:58600647-58600666 | None:intergenic | 20.0% |
| !! | ACGTTAATGACAAATATAAT+TGG | + | chr5.1:58600288-58600307 | None:intergenic | 20.0% |
| ! | AATAAGCAGATAACAACTTA+TGG | - | chr5.1:58600989-58601008 | MS.gene017270:intron | 25.0% |
| ! | AATAGTCAAATAAGTAACAG+TGG | + | chr5.1:58600420-58600439 | None:intergenic | 25.0% |
| ! | ACACATAATATTTGCCAATT+TGG | + | chr5.1:58600537-58600556 | None:intergenic | 25.0% |
| ! | ATGACAAATATAATTGGAAG+TGG | + | chr5.1:58600282-58600301 | None:intergenic | 25.0% |
| ! | ATTTGTATAGCACAAAATGT+AGG | + | chr5.1:58600472-58600491 | None:intergenic | 25.0% |
| ! | GAATAAGAATCTGTTTAGAT+TGG | + | chr5.1:58601081-58601100 | None:intergenic | 25.0% |
| ! | TTAAGCTATTAATCCAAACA+AGG | + | chr5.1:58600895-58600914 | None:intergenic | 25.0% |
| !! | TGTTTGATATTTCTATCCAA+AGG | + | chr5.1:58600793-58600812 | None:intergenic | 25.0% |
| !! | TTTTGTCAATATATTGGATG+CGG | - | chr5.1:58600233-58600252 | MS.gene017270:intron | 25.0% |
| !!! | CTGGTATTGATATGTTTTTT+CGG | - | chr5.1:58600766-58600785 | MS.gene017270:intron | 25.0% |
| !!! | TATTTTTTCTTCCAGATAAC+AGG | - | chr5.1:58601116-58601135 | MS.gene017270:CDS | 25.0% |
| ACAACTCGACATCTTAAATA+AGG | - | chr5.1:58600847-58600866 | MS.gene017270:CDS | 30.0% | |
| ATAAATGACAAGGAAATGCT+CGG | - | chr5.1:58601157-58601176 | MS.gene017270:CDS | 30.0% | |
| ATAATATTTGCCAATTTGGC+AGG | + | chr5.1:58600533-58600552 | None:intergenic | 30.0% | |
| CATTATGACATGTCAGTTAA+TGG | + | chr5.1:58600192-58600211 | None:intergenic | 30.0% | |
| GAAATAACTGCATGAACATT+TGG | + | chr5.1:58600018-58600037 | None:intergenic | 30.0% | |
| TAATATTTGCCAATTTGGCA+GGG | + | chr5.1:58600532-58600551 | None:intergenic | 30.0% | |
| TGGTTATCTTCACATGATAT+TGG | - | chr5.1:58600072-58600091 | MS.gene017270:intron | 30.0% | |
| TGTTTATGATGCTGTCAAAT+CGG | - | chr5.1:58599819-58599838 | MS.gene017270:intron | 30.0% | |
| TTAACTGACATGTCATAATG+TGG | - | chr5.1:58600192-58600211 | MS.gene017270:intron | 30.0% | |
| TTGATATTGCCTATTAAGCA+GGG | - | chr5.1:58600589-58600608 | MS.gene017270:intron | 30.0% | |
| ! | ATTTCCTTGTCATTTATGAC+AGG | + | chr5.1:58601154-58601173 | None:intergenic | 30.0% |
| ! | GCATGCTTTTGTCAATATAT+TGG | - | chr5.1:58600227-58600246 | MS.gene017270:intron | 30.0% |
| ! | TTAATGGATCTCAGGTTATT+AGG | + | chr5.1:58600176-58600195 | None:intergenic | 30.0% |
| ! | TTTCCTTGTCATTTATGACA+GGG | + | chr5.1:58601153-58601172 | None:intergenic | 30.0% |
| !! | GTTCATGCAGTTATTTCTTT+GGG | - | chr5.1:58600021-58600040 | MS.gene017270:intron | 30.0% |
| !! | GTTTGTAGTTTGTTGTGTAA+TGG | - | chr5.1:58600043-58600062 | MS.gene017270:intron | 30.0% |
| !! | TGTTCATGCAGTTATTTCTT+TGG | - | chr5.1:58600020-58600039 | MS.gene017270:intron | 30.0% |
| !! | TTGCGATCATTTTTGTCAAA+CGG | - | chr5.1:58599595-58599614 | MS.gene017270:CDS | 30.0% |
| !! | TTGTTGTGTAATGGATAACT+TGG | - | chr5.1:58600052-58600071 | MS.gene017270:intron | 30.0% |
| AAGCTATCATGAAGAGCTTA+TGG | - | chr5.1:58600965-58600984 | MS.gene017270:intron | 35.0% | |
| AATATTTGCCAATTTGGCAG+GGG | + | chr5.1:58600531-58600550 | None:intergenic | 35.0% | |
| ACAATTTCAGACATCTTGCA+AGG | - | chr5.1:58599745-58599764 | MS.gene017270:intron | 35.0% | |
| ATCATAAACAGTGTCATCTG+TGG | + | chr5.1:58599809-58599828 | None:intergenic | 35.0% | |
| ATCTTGCAAGGAAAAGGTAA+AGG | - | chr5.1:58599757-58599776 | MS.gene017270:intron | 35.0% | |
| CAGATGACACAAAACAATGT+TGG | - | chr5.1:58599927-58599946 | MS.gene017270:intron | 35.0% | |
| CTTGAATGCTTACATACAAG+GGG | - | chr5.1:58601243-58601262 | MS.gene017270:CDS | 35.0% | |
| CTTGATATCTAGATTACCTG+AGG | - | chr5.1:58600324-58600343 | MS.gene017270:intron | 35.0% | |
| CTTGTATGTAAGCATTCAAG+CGG | + | chr5.1:58601243-58601262 | None:intergenic | 35.0% | |
| GCTGGAATTATAACAGAAAG+AGG | - | chr5.1:58599990-58600009 | MS.gene017270:intron | 35.0% | |
| GCTTGAATGCTTACATACAA+GGG | - | chr5.1:58601242-58601261 | MS.gene017270:CDS | 35.0% | |
| GTTGATATTGCCTATTAAGC+AGG | - | chr5.1:58600588-58600607 | MS.gene017270:intron | 35.0% | |
| GTTGTAGCATGTTTCACTAT+AGG | - | chr5.1:58600869-58600888 | MS.gene017270:CDS | 35.0% | |
| TTGAATGCTTACATACAAGG+GGG | - | chr5.1:58601244-58601263 | MS.gene017270:CDS | 35.0% | |
| ! | ACAAAACAATGTTGGTGCTT+TGG | - | chr5.1:58599935-58599954 | MS.gene017270:intron | 35.0% |
| ! | TTGCAAGATGTCTGAAATTG+TGG | + | chr5.1:58599746-58599765 | None:intergenic | 35.0% |
| !! | GATATTGGCTTACATCAAAC+TGG | - | chr5.1:58600087-58600106 | MS.gene017270:intron | 35.0% |
| !! | TGCGATCATTTTTGTCAAAC+GGG | - | chr5.1:58599596-58599615 | MS.gene017270:CDS | 35.0% |
| !!! | GATATGTTTTTTCGGTCCTT+TGG | - | chr5.1:58600774-58600793 | MS.gene017270:intron | 35.0% |
| !!! | TCTGCAATCGATGTCATTTT+TGG | + | chr5.1:58599911-58599930 | None:intergenic | 35.0% |
| AACAGTGGTTCATACCTCTT+CGG | + | chr5.1:58600405-58600424 | None:intergenic | 40.0% | |
| ACCAGTAATTAGGGCAACAT+AGG | - | chr5.1:58600613-58600632 | MS.gene017270:intron | 40.0% | |
| ACTGACATGTCATAATGTGG+TGG | - | chr5.1:58600195-58600214 | MS.gene017270:intron | 40.0% | |
| ATGTGTCTGATCCTGTTATC+TGG | + | chr5.1:58601130-58601149 | None:intergenic | 40.0% | |
| CATCCCTGTCATAAATGACA+AGG | - | chr5.1:58601147-58601166 | MS.gene017270:CDS | 40.0% | |
| CGCTTGAATGCTTACATACA+AGG | - | chr5.1:58601241-58601260 | MS.gene017270:CDS | 40.0% | |
| GCACACGACACATTCAAATT+TGG | + | chr5.1:58600113-58600132 | None:intergenic | 40.0% | |
| TCAGACATCTTGCAAGGAAA+AGG | - | chr5.1:58599751-58599770 | MS.gene017270:intron | 40.0% | |
| TCCTATGTTGCCCTAATTAC+TGG | + | chr5.1:58600617-58600636 | None:intergenic | 40.0% | |
| TTACTGGTACCCTGCTTAAT+AGG | + | chr5.1:58600601-58600620 | None:intergenic | 40.0% | |
| ! | AAACAATGTTGGTGCTTTGG+TGG | - | chr5.1:58599938-58599957 | MS.gene017270:intron | 40.0% |
| ! | AAGCAGGGTACCAGTAATTA+GGG | - | chr5.1:58600604-58600623 | MS.gene017270:intron | 40.0% |
| ! | CATGTCAGTTAATGGATCTC+AGG | + | chr5.1:58600184-58600203 | None:intergenic | 40.0% |
| ! | TAAGCAGGGTACCAGTAATT+AGG | - | chr5.1:58600603-58600622 | MS.gene017270:intron | 40.0% |
| !! | GTTTCACTATAGGCCTTGTT+TGG | - | chr5.1:58600879-58600898 | MS.gene017270:CDS | 40.0% |
| AAGATCATCCAAGTCCACCA+AGG | - | chr5.1:58600364-58600383 | MS.gene017270:intron | 45.0% | |
| AGCACGAACAACATCTCCAA+TGG | + | chr5.1:58601191-58601210 | None:intergenic | 45.0% | |
| AGCAGACTCAAACCGTGAAA+AGG | + | chr5.1:58599686-58599705 | None:intergenic | 45.0% | |
| CAGTATTGCAAGTGCGCATA+TGG | - | chr5.1:58601034-58601053 | MS.gene017270:CDS | 45.0% | |
| CTCGCAGAACTTTGGTATCA+GGG | + | chr5.1:58600731-58600750 | None:intergenic | 45.0% | |
| CTGAGGAAGATCATCGTTCA+GGG | - | chr5.1:58600341-58600360 | MS.gene017270:intron | 45.0% | |
| CTGTATGCAAAGTTCAGCAG+TGG | - | chr5.1:58600566-58600585 | MS.gene017270:intron | 45.0% | |
| GACATGTCATAATGTGGTGG+AGG | - | chr5.1:58600198-58600217 | MS.gene017270:intron | 45.0% | |
| TCAAACCGTGAAAAGGCAAC+TGG | + | chr5.1:58599679-58599698 | None:intergenic | 45.0% | |
| TCGCAGAACTTTGGTATCAG+GGG | + | chr5.1:58600730-58600749 | None:intergenic | 45.0% | |
| TGCGCACTTGCAATACTGTT+TGG | + | chr5.1:58601032-58601051 | None:intergenic | 45.0% | |
| AAAAGGCAACTGGCTGCAAC+AGG | + | chr5.1:58599669-58599688 | None:intergenic | 50.0% | |
| AAAGGCAACTGGCTGCAACA+GGG | + | chr5.1:58599668-58599687 | None:intergenic | 50.0% | |
| AGATGTTGTTCGTGCTGTCG+TGG | - | chr5.1:58601195-58601214 | MS.gene017270:CDS | 50.0% | |
| CATAATATCCCCGACCTTGG+TGG | + | chr5.1:58600381-58600400 | None:intergenic | 50.0% | |
| CCTGAACGATGATCTTCCTC+AGG | + | chr5.1:58600343-58600362 | None:intergenic | 50.0% | |
| CCTGAGGAAGATCATCGTTC+AGG | - | chr5.1:58600340-58600359 | MS.gene017270:intron | 50.0% | |
| CGGGGATATTATGACCGAAG+AGG | - | chr5.1:58600388-58600407 | MS.gene017270:intron | 50.0% | |
| CTGCATTGCTCGCAGAACTT+TGG | + | chr5.1:58600739-58600758 | None:intergenic | 50.0% | |
| GATGTTGTTCGTGCTGTCGT+GGG | - | chr5.1:58601196-58601215 | MS.gene017270:CDS | 50.0% | |
| GCTCGCAGAACTTTGGTATC+AGG | + | chr5.1:58600732-58600751 | None:intergenic | 50.0% | |
| GGGGAGGAGAAATCAATTGC+TGG | - | chr5.1:58599972-58599991 | MS.gene017270:intron | 50.0% | |
| GGTCATAATATCCCCGACCT+TGG | + | chr5.1:58600384-58600403 | None:intergenic | 50.0% | |
| TCATCCAAGTCCACCAAGGT+CGG | - | chr5.1:58600368-58600387 | MS.gene017270:intron | 50.0% | |
| TGACAAGGAAATGCTCGGCA+TGG | - | chr5.1:58601162-58601181 | MS.gene017270:CDS | 50.0% | |
| TGCTACACCTGCTCGTATTG+AGG | - | chr5.1:58599702-58599721 | MS.gene017270:CDS | 50.0% | |
| ! | CTTTGGTGGTCGTGAAACCA+GGG | - | chr5.1:58599952-58599971 | MS.gene017270:intron | 50.0% |
| ! | GCAATTGATTTCTCCTCCCC+TGG | + | chr5.1:58599972-58599991 | None:intergenic | 50.0% |
| ! | TGCAGCCAGTTGCCTTTTCA+CGG | - | chr5.1:58599671-58599690 | MS.gene017270:CDS | 50.0% |
| ! | TGTTTTGCAACGAGTCCGCA+TGG | - | chr5.1:58599636-58599655 | MS.gene017270:CDS | 50.0% |
| ! | TTTGGTGGTCGTGAAACCAG+GGG | - | chr5.1:58599953-58599972 | MS.gene017270:intron | 50.0% |
| !! | GGAAAAGGTAAAGGCGCTGA+TGG | - | chr5.1:58599766-58599785 | MS.gene017270:intron | 50.0% |
| !! | GTAAAGGCGCTGATGGTTCA+TGG | - | chr5.1:58599773-58599792 | MS.gene017270:intron | 50.0% |
| AAGGCAACTGGCTGCAACAG+GGG | + | chr5.1:58599667-58599686 | None:intergenic | 55.0% | |
| ATCCAAGTCCACCAAGGTCG+GGG | - | chr5.1:58600370-58600389 | MS.gene017270:intron | 55.0% | |
| ATGCTCGGCATGGTGTCCAT+TGG | - | chr5.1:58601172-58601191 | MS.gene017270:CDS | 55.0% | |
| CATCCAAGTCCACCAAGGTC+GGG | - | chr5.1:58600369-58600388 | MS.gene017270:intron | 55.0% | |
| CCATGCTCCTCAATACGAGC+AGG | + | chr5.1:58599712-58599731 | None:intergenic | 55.0% | |
| CCTGCTCGTATTGAGGAGCA+TGG | - | chr5.1:58599709-58599728 | MS.gene017270:intron | 55.0% | |
| CGAGCAATGCAGCTGATGAC+TGG | - | chr5.1:58600747-58600766 | MS.gene017270:intron | 55.0% | |
| GCAACAGGGGATTCACCATG+CGG | + | chr5.1:58599654-58599673 | None:intergenic | 55.0% | |
| ! | GCGCTGATGGTTCATGGCTT+TGG | - | chr5.1:58599779-58599798 | MS.gene017270:intron | 55.0% |
| ! | GCTTTGGTGGTCGTGAAACC+AGG | - | chr5.1:58599951-58599970 | MS.gene017270:intron | 55.0% |
| CAGCGATGCCCCTGCCAAAT+TGG | - | chr5.1:58600520-58600539 | MS.gene017270:intron | 60.0% | |
| !! | ATCCCCGACCTTGGTGGACT+TGG | + | chr5.1:58600375-58600394 | None:intergenic | 60.0% |
| GGTGGTCGTGAAACCAGGGG+AGG | - | chr5.1:58599956-58599975 | MS.gene017270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 58599583 | 58601273 | 58599583 | ID=MS.gene017270 |
| chr5.1 | mRNA | 58599583 | 58601273 | 58599583 | ID=MS.gene017270.t1;Parent=MS.gene017270 |
| chr5.1 | exon | 58601016 | 58601273 | 58601016 | ID=MS.gene017270.t1.exon1;Parent=MS.gene017270.t1 |
| chr5.1 | CDS | 58601016 | 58601273 | 58601016 | ID=cds.MS.gene017270.t1;Parent=MS.gene017270.t1 |
| chr5.1 | exon | 58600845 | 58600926 | 58600845 | ID=MS.gene017270.t1.exon2;Parent=MS.gene017270.t1 |
| chr5.1 | CDS | 58600845 | 58600926 | 58600845 | ID=cds.MS.gene017270.t1;Parent=MS.gene017270.t1 |
| chr5.1 | exon | 58600447 | 58600520 | 58600447 | ID=MS.gene017270.t1.exon3;Parent=MS.gene017270.t1 |
| chr5.1 | CDS | 58600447 | 58600520 | 58600447 | ID=cds.MS.gene017270.t1;Parent=MS.gene017270.t1 |
| chr5.1 | exon | 58600088 | 58600148 | 58600088 | ID=MS.gene017270.t1.exon4;Parent=MS.gene017270.t1 |
| chr5.1 | CDS | 58600088 | 58600148 | 58600088 | ID=cds.MS.gene017270.t1;Parent=MS.gene017270.t1 |
| chr5.1 | exon | 58599583 | 58599725 | 58599583 | ID=MS.gene017270.t1.exon5;Parent=MS.gene017270.t1 |
| chr5.1 | CDS | 58599583 | 58599725 | 58599583 | ID=cds.MS.gene017270.t1;Parent=MS.gene017270.t1 |
| Gene Sequence |
| Protein sequence |
