Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017455.t1 | XP_003616384.1 | 92 | 212 | 6 | 2 | 1 | 202 | 1 | 211 | 2.80E-99 | 371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017455.t1 | Q6NLC8 | 50.5 | 210 | 93 | 5 | 1 | 200 | 1 | 209 | 1.7e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017455.t1 | G7KBN9 | 92.0 | 212 | 6 | 2 | 1 | 202 | 1 | 211 | 2.0e-99 | 371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017455 | MS.gene006970 | PPI |
| MS.gene017455 | MS.gene62991 | PPI |
| MS.gene026608 | MS.gene017455 | PPI |
| MS.gene59144 | MS.gene017455 | PPI |
| MS.gene017455 | MS.gene83133 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017455.t1 | MTR_5g079610 | 91.981 | 212 | 6 | 2 | 1 | 202 | 1 | 211 | 5.23e-138 | 384 |
| MS.gene017455.t1 | MTR_3g067730 | 61.261 | 222 | 58 | 7 | 1 | 200 | 1 | 216 | 4.14e-77 | 230 |
| MS.gene017455.t1 | MTR_1g030740 | 53.409 | 176 | 73 | 3 | 1 | 175 | 1 | 168 | 7.76e-57 | 179 |
| MS.gene017455.t1 | MTR_4g085100 | 46.377 | 207 | 84 | 5 | 1 | 189 | 1 | 198 | 1.39e-50 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017455.t1 | AT1G66480 | 57.062 | 177 | 67 | 6 | 1 | 170 | 1 | 175 | 1.51e-59 | 186 |
| MS.gene017455.t1 | AT5G37840 | 53.261 | 184 | 78 | 4 | 1 | 182 | 1 | 178 | 1.11e-55 | 176 |
| MS.gene017455.t1 | AT2G01340 | 52.632 | 171 | 71 | 4 | 1 | 171 | 1 | 161 | 7.16e-53 | 169 |
| MS.gene017455.t1 | AT1G71015 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 1.04e-39 | 134 |
| MS.gene017455.t1 | AT1G71015 | 50.000 | 170 | 76 | 4 | 1 | 170 | 1 | 161 | 1.04e-39 | 134 |
Find 56 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACCACCATCATCAAATT+TGG | 0.171380 | 5.1:-61839672 | MS.gene017455:CDS |
| GAAGATTATGAGTTTGTATA+TGG | 0.227289 | 5.1:-61839543 | MS.gene017455:CDS |
| CATCAAATTTGGGCTTTGAT+AGG | 0.291266 | 5.1:-61839661 | MS.gene017455:CDS |
| GAGTTCTTGATTTGGCTCTA+AGG | 0.329180 | 5.1:+61839865 | None:intergenic |
| CAGTAAAACACTTCGGGCTT+AGG | 0.337959 | 5.1:-61839895 | MS.gene017455:CDS |
| CACCCTCATGGACCCATCAT+AGG | 0.358037 | 5.1:+61839637 | None:intergenic |
| GCTAAGATTATGAAGATAGA+TGG | 0.365523 | 5.1:-61840001 | MS.gene017455:CDS |
| CTCAAGCAGTAAAACACTTC+GGG | 0.366167 | 5.1:-61839901 | MS.gene017455:CDS |
| TTGGGCTTGAGTTCTTGATT+TGG | 0.367392 | 5.1:+61839857 | None:intergenic |
| GGGTACGTTCTAGTGGAATA+AGG | 0.387824 | 5.1:-61839766 | MS.gene017455:CDS |
| TTCATCTTCGGGCTGAACCT+TGG | 0.389122 | 5.1:+61839808 | None:intergenic |
| ACAACTTCGTTTGATGTTGT+TGG | 0.390472 | 5.1:+61839956 | None:intergenic |
| GGCTTTGATAGGCCCTATGA+TGG | 0.391329 | 5.1:-61839650 | MS.gene017455:CDS |
| TCATCTTCGGGCTGAACCTT+GGG | 0.401043 | 5.1:+61839809 | None:intergenic |
| AAACCACCATCATCAAATTT+GGG | 0.402951 | 5.1:-61839671 | MS.gene017455:CDS |
| AGTTCTTGATTTGGCTCTAA+GGG | 0.425177 | 5.1:+61839866 | None:intergenic |
| GACTTTCTTCAATCTCCATT+GGG | 0.425939 | 5.1:+61837252 | None:intergenic |
| GGACTTTCTTCAATCTCCAT+TGG | 0.427544 | 5.1:+61837251 | None:intergenic |
| AGCCCAGTTGGAAAAGTTGA+TGG | 0.431835 | 5.1:-61839597 | MS.gene017455:CDS |
| AGTAAAACACTTCGGGCTTA+GGG | 0.449480 | 5.1:-61839894 | MS.gene017455:CDS |
| TATTGAGGAGCTGCTTCAAC+AGG | 0.453324 | 5.1:+61837230 | None:intergenic |
| TTGATGGAAGAAAGTAATGA+TGG | 0.458160 | 5.1:-61839581 | MS.gene017455:CDS |
| CACTAACGAAATATCTGAAA+CGG | 0.473609 | 5.1:+61839694 | None:intergenic |
| CCACTAGAACGTACCCTCCT+AGG | 0.478189 | 5.1:+61839773 | None:intergenic |
| AAGATTATGAGTTTGTATAT+GGG | 0.479738 | 5.1:-61839542 | MS.gene017455:CDS |
| GAACCTTGGGTAAATCTACT+AGG | 0.494957 | 5.1:+61839822 | None:intergenic |
| TAATGATGGGTCTGAGGTCG+CGG | 0.497077 | 5.1:-61839567 | MS.gene017455:CDS |
| AATAAGGAACGTGGATGCTA+AGG | 0.505115 | 5.1:-61839750 | MS.gene017455:CDS |
| AGAATCTAAGAGAACATGGT+TGG | 0.514582 | 5.1:+61839922 | None:intergenic |
| AAGCCTCATCTTCACCCTCA+TGG | 0.515255 | 5.1:+61839625 | None:intergenic |
| CCTAGGAGGGTACGTTCTAG+TGG | 0.534238 | 5.1:-61839773 | MS.gene017455:CDS |
| ACCCTCATGGACCCATCATA+GGG | 0.534943 | 5.1:+61839638 | None:intergenic |
| TATGGGTGGCGGTGGTGATG+CGG | 0.535186 | 5.1:-61839525 | MS.gene017455:CDS |
| GAATCTAAGAGAACATGGTT+GGG | 0.536739 | 5.1:+61839923 | None:intergenic |
| AAGCCCAAATTTGATGATGG+TGG | 0.537750 | 5.1:+61839668 | None:intergenic |
| GGGTGGCGGTGGTGATGCGG+CGG | 0.547156 | 5.1:-61839522 | MS.gene017455:CDS |
| CCTAAGAGGAAATACTATTG+AGG | 0.556467 | 5.1:+61837215 | None:intergenic |
| ATTATGAGTTTGTATATGGG+TGG | 0.558604 | 5.1:-61839539 | MS.gene017455:CDS |
| GAGGCTTCCTAAAGCCCAGT+TGG | 0.560896 | 5.1:-61839609 | MS.gene017455:CDS |
| TCAAAGCCCAAATTTGATGA+TGG | 0.561669 | 5.1:+61839665 | None:intergenic |
| TCTCAAGCAGTAAAACACTT+CGG | 0.563644 | 5.1:-61839902 | MS.gene017455:CDS |
| CTTGAGAATCTAAGAGAACA+TGG | 0.563823 | 5.1:+61839918 | None:intergenic |
| GCTTTGATAGGCCCTATGAT+GGG | 0.564232 | 5.1:-61839649 | MS.gene017455:CDS |
| CCAATCATGGGAAACACCAT+AGG | 0.564589 | 5.1:-61840037 | None:intergenic |
| ATGAGTTTGTATATGGGTGG+CGG | 0.586739 | 5.1:-61839536 | MS.gene017455:CDS |
| ATAAGGAACGTGGATGCTAA+GGG | 0.588791 | 5.1:-61839749 | MS.gene017455:CDS |
| GGTCCATGAGGGTGAAGATG+AGG | 0.594224 | 5.1:-61839628 | MS.gene017455:CDS |
| TGATGGAAGAAAGTAATGAT+GGG | 0.598253 | 5.1:-61839580 | MS.gene017455:CDS |
| CTTCCTAGTAGATTTACCCA+AGG | 0.604663 | 5.1:-61839825 | MS.gene017455:CDS |
| GGTGATGCGGCGGAGCATGA+CGG | 0.634118 | 5.1:-61839512 | MS.gene017455:CDS |
| GGCCCTATGATGGGTCCATG+AGG | 0.634229 | 5.1:-61839640 | MS.gene017455:CDS |
| GCCCTATGATGGGTCCATGA+GGG | 0.637788 | 5.1:-61839639 | MS.gene017455:CDS |
| AGTTTGTATATGGGTGGCGG+TGG | 0.641348 | 5.1:-61839533 | MS.gene017455:CDS |
| AGAAAGTAATGATGGGTCTG+AGG | 0.641587 | 5.1:-61839573 | MS.gene017455:CDS |
| TTCTAGTGGAATAAGGAACG+TGG | 0.683798 | 5.1:-61839759 | MS.gene017455:CDS |
| ACGTACCCTCCTAGGTAACG+AGG | 0.744483 | 5.1:+61839781 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAAAAAAAATTATTGA+AGG | - | chr5.1:61838877-61838896 | MS.gene017455:intron | 10.0% |
| !! | TTGTAAAAAAAATTATTGAA+GGG | - | chr5.1:61838878-61838897 | MS.gene017455:intron | 10.0% |
| !!! | AAAGTATTATAAAAAATTAG+AGG | + | chr5.1:61838615-61838634 | None:intergenic | 10.0% |
| !!! | TCTATATTTTAATACTTAAT+TGG | - | chr5.1:61839061-61839080 | MS.gene017455:intron | 10.0% |
| !!! | TTTAATAAAGGTTTTATTTT+TGG | - | chr5.1:61839158-61839177 | MS.gene017455:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTCCAAAT+AGG | - | chr5.1:61838322-61838341 | MS.gene017455:intron | 10.0% |
| !! | AACTACTCATTATATATTTA+AGG | + | chr5.1:61839201-61839220 | None:intergenic | 15.0% |
| !! | AAGGTTTAAAAATAAGAATA+GGG | + | chr5.1:61838170-61838189 | None:intergenic | 15.0% |
| !! | ACTACTCATTATATATTTAA+GGG | + | chr5.1:61839200-61839219 | None:intergenic | 15.0% |
| !!! | AATAACATTTAGATTTTGTT+TGG | - | chr5.1:61839700-61839719 | MS.gene017455:CDS | 15.0% |
| !!! | AATTCATTAACATAATTTTG+TGG | + | chr5.1:61839944-61839963 | None:intergenic | 15.0% |
| !!! | TTTTGTTGTTATTATTATCT+TGG | - | chr5.1:61837837-61837856 | MS.gene017455:intron | 15.0% |
| !! | AAAAAAAAAAGGAAAGACTT+AGG | + | chr5.1:61838651-61838670 | None:intergenic | 20.0% |
| !! | AAAATAACATTCTTTCAAAG+TGG | - | chr5.1:61837937-61837956 | MS.gene017455:intron | 20.0% |
| !! | AAGATTATGAGTTTGTATAT+GGG | - | chr5.1:61837718-61837737 | MS.gene017455:intron | 20.0% |
| !! | AATAACTTAGTACCTAAAAT+AGG | + | chr5.1:61839918-61839937 | None:intergenic | 20.0% |
| !! | ACAACTATATAATAGACTTT+AGG | - | chr5.1:61838406-61838425 | MS.gene017455:intron | 20.0% |
| !! | AGGTTTAAAAATAAGAATAG+GGG | + | chr5.1:61838169-61838188 | None:intergenic | 20.0% |
| !! | AGTAAGAAGAGTAAATTAAA+TGG | + | chr5.1:61838690-61838709 | None:intergenic | 20.0% |
| !! | ATCATTACTTAAAAAAGTGA+AGG | + | chr5.1:61838189-61838208 | None:intergenic | 20.0% |
| !! | GAAGGTTTAAAAATAAGAAT+AGG | + | chr5.1:61838171-61838190 | None:intergenic | 20.0% |
| !! | GAGAACATATTTAAATGATT+TGG | + | chr5.1:61838743-61838762 | None:intergenic | 20.0% |
| !! | TAATTTCGCTACATTAAAAT+TGG | - | chr5.1:61839249-61839268 | MS.gene017455:intron | 20.0% |
| !! | TGTTCGGTAAAAAAAAAAAA+AGG | + | chr5.1:61838662-61838681 | None:intergenic | 20.0% |
| !! | TTAAGCTTAAAAATTTGAGA+AGG | - | chr5.1:61838281-61838300 | MS.gene017455:intron | 20.0% |
| !!! | AAACTTATTAAAGGAGATTT+TGG | - | chr5.1:61839610-61839629 | MS.gene017455:CDS | 20.0% |
| !!! | AAGACTTTGGATTTTAATAA+AGG | - | chr5.1:61839146-61839165 | MS.gene017455:intron | 20.0% |
| !!! | ACTTAATTTTTTGTTGTACT+TGG | + | chr5.1:61838523-61838542 | None:intergenic | 20.0% |
| !!! | CATATATTGATTGCATTTTA+AGG | + | chr5.1:61839320-61839339 | None:intergenic | 20.0% |
| ! | AAACAATTTAAGTGTGTGTT+TGG | + | chr5.1:61839849-61839868 | None:intergenic | 25.0% |
| ! | AGCACATATAGTAGAAAAAT+TGG | + | chr5.1:61838768-61838787 | None:intergenic | 25.0% |
| ! | GAAGATTATGAGTTTGTATA+TGG | - | chr5.1:61837717-61837736 | MS.gene017455:intron | 25.0% |
| ! | GGCACAATAAAACTTATTAA+AGG | - | chr5.1:61839601-61839620 | MS.gene017455:CDS | 25.0% |
| ! | GGGATTTGAATTTAATTACT+TGG | - | chr5.1:61839004-61839023 | MS.gene017455:intron | 25.0% |
| ! | TCATGTTAGAATTCGAATTT+GGG | - | chr5.1:61838922-61838941 | MS.gene017455:intron | 25.0% |
| ! | TTCATGTTAGAATTCGAATT+TGG | - | chr5.1:61838921-61838940 | MS.gene017455:intron | 25.0% |
| !! | ACTAGGAAGTAAATTTTCTT+GGG | + | chr5.1:61837424-61837443 | None:intergenic | 25.0% |
| !! | ATTCGATAGTTTCCTATTTT+AGG | - | chr5.1:61839903-61839922 | MS.gene017455:CDS | 25.0% |
| !! | ATTTTACTTGCTTCAATGTT+AGG | + | chr5.1:61839396-61839415 | None:intergenic | 25.0% |
| !! | TACTAGGAAGTAAATTTTCT+TGG | + | chr5.1:61837425-61837444 | None:intergenic | 25.0% |
| !! | TCCACTATAAACTTTTACAT+GGG | - | chr5.1:61838221-61838240 | MS.gene017455:intron | 25.0% |
| !! | TTCCACTATAAACTTTTACA+TGG | - | chr5.1:61838220-61838239 | MS.gene017455:intron | 25.0% |
| !!! | AAATTAAATGGAGAAGTGTT+CGG | + | chr5.1:61838678-61838697 | None:intergenic | 25.0% |
| !!! | ACCATAAAAGTATCTATAAG+GGG | - | chr5.1:61838245-61838264 | MS.gene017455:intron | 25.0% |
| !!! | ATTTTTTGTTGTACTTGGAA+TGG | + | chr5.1:61838518-61838537 | None:intergenic | 25.0% |
| !!! | GACCATAAAAGTATCTATAA+GGG | - | chr5.1:61838244-61838263 | MS.gene017455:intron | 25.0% |
| !!! | TCTAAATGTTATTTCTTCTC+TGG | + | chr5.1:61839693-61839712 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTGTACTTGGAAT+GGG | + | chr5.1:61838517-61838536 | None:intergenic | 25.0% |
| AAACCACCATCATCAAATTT+GGG | - | chr5.1:61837589-61837608 | MS.gene017455:intron | 30.0% | |
| AAACTGTAAATGTTCTCTAG+CGG | + | chr5.1:61839491-61839510 | None:intergenic | 30.0% | |
| AATATGAGGAAAAGATAAGG+TGG | + | chr5.1:61838464-61838483 | None:intergenic | 30.0% | |
| AATTATTGAAGGGTAACACT+TGG | - | chr5.1:61838888-61838907 | MS.gene017455:intron | 30.0% | |
| ATTATGAGTTTGTATATGGG+TGG | - | chr5.1:61837721-61837740 | MS.gene017455:intron | 30.0% | |
| CACTAACGAAATATCTGAAA+CGG | + | chr5.1:61837569-61837588 | None:intergenic | 30.0% | |
| GAGAATATGAGGAAAAGATA+AGG | + | chr5.1:61838467-61838486 | None:intergenic | 30.0% | |
| GCAATCAATATATGAAGTTG+AGG | - | chr5.1:61839326-61839345 | MS.gene017455:intron | 30.0% | |
| GCTAAGATTATGAAGATAGA+TGG | - | chr5.1:61837259-61837278 | MS.gene017455:CDS | 30.0% | |
| GTAACTTCTGCAAAAAATCA+CGG | - | chr5.1:61839788-61839807 | MS.gene017455:CDS | 30.0% | |
| TACCTTCATTCTCTTTCTAA+TGG | - | chr5.1:61838787-61838806 | MS.gene017455:intron | 30.0% | |
| TAGTGTTTGTGTAAGAATCA+CGG | + | chr5.1:61839821-61839840 | None:intergenic | 30.0% | |
| TCAAATACCCAATTTAGCAA+GGG | - | chr5.1:61839638-61839657 | MS.gene017455:CDS | 30.0% | |
| TGATGGAAGAAAGTAATGAT+GGG | - | chr5.1:61837680-61837699 | MS.gene017455:intron | 30.0% | |
| TTCAAATACCCAATTTAGCA+AGG | - | chr5.1:61839637-61839656 | MS.gene017455:CDS | 30.0% | |
| TTGATGGAAGAAAGTAATGA+TGG | - | chr5.1:61837679-61837698 | MS.gene017455:intron | 30.0% | |
| ! | ACCCCTTATAGATACTTTTA+TGG | + | chr5.1:61838249-61838268 | None:intergenic | 30.0% |
| ! | ATAGAAGCATAACAAGACTT+TGG | - | chr5.1:61839133-61839152 | MS.gene017455:intron | 30.0% |
| ! | ATGCTATGTGAAAAGGATTT+TGG | - | chr5.1:61839445-61839464 | MS.gene017455:intron | 30.0% |
| ! | CCACTATAAACTTTTACATG+GGG | - | chr5.1:61838222-61838241 | MS.gene017455:intron | 30.0% |
| ! | TGTTGGAGTTTTTACTTTGA+AGG | + | chr5.1:61837290-61837309 | None:intergenic | 30.0% |
| !! | GGACCATAAAAGTATCTATA+AGG | - | chr5.1:61838243-61838262 | MS.gene017455:intron | 30.0% |
| !! | TTTTTGTTGTACTTGGAATG+GGG | + | chr5.1:61838516-61838535 | None:intergenic | 30.0% |
| !!! | AGCTTTTTTGCTTTTTCCTA+TGG | + | chr5.1:61837242-61837261 | None:intergenic | 30.0% |
| !!! | TAACGAGGTTTTTTCATCTT+CGG | + | chr5.1:61837467-61837486 | None:intergenic | 30.0% |
| AATACTCGTCGTTTACTTGT+TGG | - | chr5.1:61839575-61839594 | MS.gene017455:CDS | 35.0% | |
| ACAACTTCGTTTGATGTTGT+TGG | + | chr5.1:61837307-61837326 | None:intergenic | 35.0% | |
| AGAATCTAAGAGAACATGGT+TGG | + | chr5.1:61837341-61837360 | None:intergenic | 35.0% | |
| ATCACGTAGGTCAAATATTG+TGG | + | chr5.1:61838082-61838101 | None:intergenic | 35.0% | |
| ATGAAAAAACCTCGTTACCT+AGG | - | chr5.1:61837470-61837489 | MS.gene017455:intron | 35.0% | |
| CAAATACCCAATTTAGCAAG+GGG | - | chr5.1:61839639-61839658 | MS.gene017455:CDS | 35.0% | |
| CACCATTAGAAAGAGAATGA+AGG | + | chr5.1:61838792-61838811 | None:intergenic | 35.0% | |
| CCCCATGTAAAAGTTTATAG+TGG | + | chr5.1:61838225-61838244 | None:intergenic | 35.0% | |
| CTTGAGAATCTAAGAGAACA+TGG | + | chr5.1:61837345-61837364 | None:intergenic | 35.0% | |
| GAAACCACCATCATCAAATT+TGG | - | chr5.1:61837588-61837607 | MS.gene017455:intron | 35.0% | |
| GAATCTAAGAGAACATGGTT+GGG | + | chr5.1:61837340-61837359 | None:intergenic | 35.0% | |
| GACTTTCTTCAATCTCCATT+GGG | + | chr5.1:61840011-61840030 | None:intergenic | 35.0% | |
| GTCAAACATGCTATGTGAAA+AGG | - | chr5.1:61839438-61839457 | MS.gene017455:intron | 35.0% | |
| GTGATAAGACTAGACATGAT+AGG | + | chr5.1:61838826-61838845 | None:intergenic | 35.0% | |
| TCAAAGCCCAAATTTGATGA+TGG | + | chr5.1:61837598-61837617 | None:intergenic | 35.0% | |
| TCACGTAGGTCAAATATTGT+GGG | + | chr5.1:61838081-61838100 | None:intergenic | 35.0% | |
| TCTCAAGCAGTAAAACACTT+CGG | - | chr5.1:61837358-61837377 | MS.gene017455:intron | 35.0% | |
| TGAGCTCTTACTTTCTTGTA+GGG | - | chr5.1:61838983-61839002 | MS.gene017455:intron | 35.0% | |
| TGTTTGGTATCACATTGAGT+AGG | - | chr5.1:61839716-61839735 | MS.gene017455:CDS | 35.0% | |
| TTGAAATCCGCAACAAGAAA+AGG | + | chr5.1:61838039-61838058 | None:intergenic | 35.0% | |
| TTGAGCTCTTACTTTCTTGT+AGG | - | chr5.1:61838982-61839001 | MS.gene017455:intron | 35.0% | |
| ! | ATCTTTTCCTCATATTCTCG+TGG | - | chr5.1:61838468-61838487 | MS.gene017455:intron | 35.0% |
| ! | ATTTTGCCCCTTGCTAAATT+GGG | + | chr5.1:61839648-61839667 | None:intergenic | 35.0% |
| ! | CATCAAATTTGGGCTTTGAT+AGG | - | chr5.1:61837599-61837618 | MS.gene017455:intron | 35.0% |
| ! | CTATGTGAAAAGGATTTTGG+AGG | - | chr5.1:61839448-61839467 | MS.gene017455:intron | 35.0% |
| ! | TATTTTGCCCCTTGCTAAAT+TGG | + | chr5.1:61839649-61839668 | None:intergenic | 35.0% |
| ! | TCCAAATAGGTCAAGTATTG+CGG | - | chr5.1:61838335-61838354 | MS.gene017455:intron | 35.0% |
| ! | TTCCATCAACTTTTCCAACT+GGG | + | chr5.1:61837668-61837687 | None:intergenic | 35.0% |
| ! | TTGAGAAGGTCAAGTATTGT+GGG | - | chr5.1:61838295-61838314 | MS.gene017455:intron | 35.0% |
| ! | TTTGAGAAGGTCAAGTATTG+TGG | - | chr5.1:61838294-61838313 | MS.gene017455:intron | 35.0% |
| !! | AGTTCTTGATTTGGCTCTAA+GGG | + | chr5.1:61837397-61837416 | None:intergenic | 35.0% |
| !!! | AACGAGGTTTTTTCATCTTC+GGG | + | chr5.1:61837466-61837485 | None:intergenic | 35.0% |
| AAAAAACCTCGTTACCTAGG+AGG | - | chr5.1:61837473-61837492 | MS.gene017455:intron | 40.0% | |
| AAAAACCTCGTTACCTAGGA+GGG | - | chr5.1:61837474-61837493 | MS.gene017455:intron | 40.0% | |
| AATAAGGAACGTGGATGCTA+AGG | - | chr5.1:61837510-61837529 | MS.gene017455:intron | 40.0% | |
| AGTAAAACACTTCGGGCTTA+GGG | - | chr5.1:61837366-61837385 | MS.gene017455:intron | 40.0% | |
| ATAAGGAACGTGGATGCTAA+GGG | - | chr5.1:61837511-61837530 | MS.gene017455:intron | 40.0% | |
| ATACTTATACATACCCCACG+AGG | + | chr5.1:61837799-61837818 | None:intergenic | 40.0% | |
| ATGAGTTTGTATATGGGTGG+CGG | - | chr5.1:61837724-61837743 | MS.gene017455:intron | 40.0% | |
| CTCAAGCAGTAAAACACTTC+GGG | - | chr5.1:61837359-61837378 | MS.gene017455:intron | 40.0% | |
| CTTCCTAGTAGATTTACCCA+AGG | - | chr5.1:61837435-61837454 | MS.gene017455:intron | 40.0% | |
| GAACCTTGGGTAAATCTACT+AGG | + | chr5.1:61837441-61837460 | None:intergenic | 40.0% | |
| GAGCTCTTACTTTCTTGTAG+GGG | - | chr5.1:61838984-61839003 | MS.gene017455:intron | 40.0% | |
| GGACTTTCTTCAATCTCCAT+TGG | + | chr5.1:61840012-61840031 | None:intergenic | 40.0% | |
| TCTGTGTGAAATGATCACGT+AGG | + | chr5.1:61838095-61838114 | None:intergenic | 40.0% | |
| TTCGTTGTGGCGTTTCATAA+TGG | - | chr5.1:61837968-61837987 | MS.gene017455:intron | 40.0% | |
| TTCTAGTGGAATAAGGAACG+TGG | - | chr5.1:61837501-61837520 | MS.gene017455:intron | 40.0% | |
| TTGGGCTTGAGTTCTTGATT+TGG | + | chr5.1:61837406-61837425 | None:intergenic | 40.0% | |
| ! | AACTTTTCCAACTGGGCTTT+AGG | + | chr5.1:61837661-61837680 | None:intergenic | 40.0% |
| ! | CCAAATAGGTCAAGTATTGC+GGG | - | chr5.1:61838336-61838355 | MS.gene017455:intron | 40.0% |
| ! | CTTCCATCAACTTTTCCAAC+TGG | + | chr5.1:61837669-61837688 | None:intergenic | 40.0% |
| !! | AAGCCCAAATTTGATGATGG+TGG | + | chr5.1:61837595-61837614 | None:intergenic | 40.0% |
| !! | AGAAAGTAATGATGGGTCTG+AGG | - | chr5.1:61837687-61837706 | MS.gene017455:intron | 40.0% |
| !! | GAGTTCTTGATTTGGCTCTA+AGG | + | chr5.1:61837398-61837417 | None:intergenic | 40.0% |
| AGCCCAGTTGGAAAAGTTGA+TGG | - | chr5.1:61837663-61837682 | MS.gene017455:intron | 45.0% | |
| AGTGGCTTGAAGTTTCGTTG+TGG | - | chr5.1:61837955-61837974 | MS.gene017455:intron | 45.0% | |
| ATTCTCGTGGCAATTGGCAA+AGG | - | chr5.1:61838481-61838500 | MS.gene017455:intron | 45.0% | |
| CAGTAAAACACTTCGGGCTT+AGG | - | chr5.1:61837365-61837384 | MS.gene017455:intron | 45.0% | |
| CCAATTGCCACGAGAATATG+AGG | + | chr5.1:61838478-61838497 | None:intergenic | 45.0% | |
| CCCGCAATACTTGACCTATT+TGG | + | chr5.1:61838339-61838358 | None:intergenic | 45.0% | |
| CCTCATATTCTCGTGGCAAT+TGG | - | chr5.1:61838475-61838494 | MS.gene017455:intron | 45.0% | |
| GACTTGCGTGAAATTGCATG+TGG | - | chr5.1:61837998-61838017 | MS.gene017455:intron | 45.0% | |
| GCTTTGATAGGCCCTATGAT+GGG | - | chr5.1:61837611-61837630 | MS.gene017455:intron | 45.0% | |
| GGGTACGTTCTAGTGGAATA+AGG | - | chr5.1:61837494-61837513 | MS.gene017455:intron | 45.0% | |
| GGTCAAATATTGTGGGACAG+AGG | + | chr5.1:61838074-61838093 | None:intergenic | 45.0% | |
| TATTGAGGAGCTGCTTCAAC+AGG | + | chr5.1:61840033-61840052 | None:intergenic | 45.0% | |
| TGCATGTGGTTGCAAAGACA+GGG | - | chr5.1:61838012-61838031 | MS.gene017455:intron | 45.0% | |
| TTGCATGTGGTTGCAAAGAC+AGG | - | chr5.1:61838011-61838030 | MS.gene017455:intron | 45.0% | |
| ! | ACAGGGTCCTTTTCTTGTTG+CGG | - | chr5.1:61838029-61838048 | MS.gene017455:intron | 45.0% |
| ! | AGCATGACGGTGATGTTTTG+CGG | - | chr5.1:61837761-61837780 | MS.gene017455:intron | 45.0% |
| ! | ATAGGTCAAGTATTGCGGGA+CGG | - | chr5.1:61838340-61838359 | MS.gene017455:intron | 45.0% |
| ! | TCGTCGTTTACTTGTTGGTC+TGG | - | chr5.1:61839580-61839599 | MS.gene017455:CDS | 45.0% |
| !! | ACGAGTGAGTTTTAGCCCAA+TGG | - | chr5.1:61839993-61840012 | MS.gene017455:CDS | 45.0% |
| !!! | ATGATTTTATTTTTTTTTAA+AGG | + | chr5.1:61838386-61838405 | None:intergenic | 5.0% |
| !!! | TAAAAAAATAAATAAACTTT+TGG | - | chr5.1:61838438-61838457 | MS.gene017455:intron | 5.0% |
| AAGCCTCATCTTCACCCTCA+TGG | + | chr5.1:61837638-61837657 | None:intergenic | 50.0% | |
| ACCCTCATGGACCCATCATA+GGG | + | chr5.1:61837625-61837644 | None:intergenic | 50.0% | |
| TACATACCCCACGAGGCTTT+CGG | + | chr5.1:61837792-61837811 | None:intergenic | 50.0% | |
| TCATCTTCGGGCTGAACCTT+GGG | + | chr5.1:61837454-61837473 | None:intergenic | 50.0% | |
| TTCATCTTCGGGCTGAACCT+TGG | + | chr5.1:61837455-61837474 | None:intergenic | 50.0% | |
| ! | AGTTTGTATATGGGTGGCGG+TGG | - | chr5.1:61837727-61837746 | MS.gene017455:intron | 50.0% |
| ! | GGCTTTGATAGGCCCTATGA+TGG | - | chr5.1:61837610-61837629 | MS.gene017455:intron | 50.0% |
| !! | TAATGATGGGTCTGAGGTCG+CGG | - | chr5.1:61837693-61837712 | MS.gene017455:intron | 50.0% |
| ACGTACCCTCCTAGGTAACG+AGG | + | chr5.1:61837482-61837501 | None:intergenic | 55.0% | |
| CACCCTCATGGACCCATCAT+AGG | + | chr5.1:61837626-61837645 | None:intergenic | 55.0% | |
| CCACTAGAACGTACCCTCCT+AGG | + | chr5.1:61837490-61837509 | None:intergenic | 55.0% | |
| GAGGCTTCCTAAAGCCCAGT+TGG | - | chr5.1:61837651-61837670 | MS.gene017455:intron | 55.0% | |
| GCTAAACCGAAAGCCTCGTG+GGG | - | chr5.1:61837783-61837802 | MS.gene017455:intron | 55.0% | |
| GGCTAAACCGAAAGCCTCGT+GGG | - | chr5.1:61837782-61837801 | MS.gene017455:intron | 55.0% | |
| GGTCCATGAGGGTGAAGATG+AGG | - | chr5.1:61837632-61837651 | MS.gene017455:intron | 55.0% | |
| ! | CCTAGGAGGGTACGTTCTAG+TGG | - | chr5.1:61837487-61837506 | MS.gene017455:intron | 55.0% |
| ! | GTCAAGTATTGCGGGACGGA+GGG | - | chr5.1:61838344-61838363 | MS.gene017455:intron | 55.0% |
| !! | GCCCTATGATGGGTCCATGA+GGG | - | chr5.1:61837621-61837640 | MS.gene017455:intron | 55.0% |
| CGGCTAAACCGAAAGCCTCG+TGG | - | chr5.1:61837781-61837800 | MS.gene017455:intron | 60.0% | |
| ! | GGTCAAGTATTGCGGGACGG+AGG | - | chr5.1:61838343-61838362 | MS.gene017455:intron | 60.0% |
| ! | TATGGGTGGCGGTGGTGATG+CGG | - | chr5.1:61837735-61837754 | MS.gene017455:intron | 60.0% |
| !! | GGCCCTATGATGGGTCCATG+AGG | - | chr5.1:61837620-61837639 | MS.gene017455:intron | 60.0% |
| GGTGATGCGGCGGAGCATGA+CGG | - | chr5.1:61837748-61837767 | MS.gene017455:intron | 65.0% | |
| ! | GGGTGGCGGTGGTGATGCGG+CGG | - | chr5.1:61837738-61837757 | MS.gene017455:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 61837229 | 61840053 | 61837229 | ID=MS.gene017455 |
| chr5.1 | mRNA | 61837229 | 61840053 | 61837229 | ID=MS.gene017455.t1;Parent=MS.gene017455 |
| chr5.1 | exon | 61839508 | 61840053 | 61839508 | ID=MS.gene017455.t1.exon1;Parent=MS.gene017455.t1 |
| chr5.1 | CDS | 61839508 | 61840053 | 61839508 | ID=cds.MS.gene017455.t1;Parent=MS.gene017455.t1 |
| chr5.1 | exon | 61837229 | 61837291 | 61837229 | ID=MS.gene017455.t1.exon2;Parent=MS.gene017455.t1 |
| chr5.1 | CDS | 61837229 | 61837291 | 61837229 | ID=cds.MS.gene017455.t1;Parent=MS.gene017455.t1 |
| Gene Sequence |
| Protein sequence |
