Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017542.t1 | P46278.1 | 98.6 | 434 | 5 | 1 | 1 | 433 | 1 | 434 | 2.40E-228 | 801.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017542.t1 | P46278 | 98.6 | 434 | 5 | 1 | 1 | 433 | 1 | 434 | 5.7e-231 | 801.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017542.t1 | G7L9H0 | 98.6 | 434 | 5 | 1 | 1 | 433 | 1 | 434 | 2.9e-228 | 800.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017542 | MS.gene68361 | PPI |
| MS.gene017542 | MS.gene64859 | PPI |
| MS.gene017542 | MS.gene67555 | PPI |
| MS.gene65301 | MS.gene017542 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017542.t1 | MTR_8g074000 | 98.618 | 434 | 5 | 1 | 1 | 433 | 1 | 434 | 0.0 | 894 |
| MS.gene017542.t1 | MTR_5g023790 | 73.086 | 431 | 103 | 5 | 6 | 431 | 6 | 428 | 0.0 | 638 |
| MS.gene017542.t1 | MTR_5g023790 | 72.656 | 384 | 92 | 5 | 6 | 384 | 6 | 381 | 0.0 | 557 |
| MS.gene017542.t1 | MTR_5g023790 | 70.462 | 325 | 83 | 5 | 6 | 325 | 6 | 322 | 6.38e-158 | 450 |
| MS.gene017542.t1 | MTR_7g089080 | 47.101 | 276 | 139 | 2 | 158 | 427 | 182 | 456 | 3.05e-77 | 261 |
| MS.gene017542.t1 | MTR_5g088980 | 43.223 | 273 | 152 | 3 | 153 | 423 | 143 | 414 | 5.30e-75 | 240 |
| MS.gene017542.t1 | MTR_1g011470 | 39.209 | 278 | 155 | 6 | 155 | 422 | 142 | 415 | 2.68e-57 | 194 |
| MS.gene017542.t1 | MTR_3g107970 | 39.608 | 255 | 147 | 3 | 175 | 422 | 213 | 467 | 4.33e-55 | 190 |
| MS.gene017542.t1 | MTR_3g088415 | 35.789 | 285 | 171 | 6 | 148 | 423 | 216 | 497 | 2.65e-53 | 186 |
| MS.gene017542.t1 | MTR_3g088405 | 38.430 | 242 | 132 | 6 | 196 | 423 | 264 | 502 | 4.45e-51 | 180 |
| MS.gene017542.t1 | MTR_2g102550 | 38.057 | 247 | 146 | 3 | 175 | 414 | 167 | 413 | 1.51e-48 | 171 |
| MS.gene017542.t1 | MTR_2g102520 | 40.343 | 233 | 131 | 4 | 158 | 383 | 199 | 430 | 8.15e-48 | 171 |
| MS.gene017542.t1 | MTR_1g018680 | 35.178 | 253 | 155 | 4 | 175 | 418 | 91 | 343 | 8.68e-47 | 165 |
| MS.gene017542.t1 | MTR_3g088415 | 39.035 | 228 | 129 | 5 | 148 | 368 | 216 | 440 | 1.31e-46 | 166 |
| MS.gene017542.t1 | MTR_3g102510 | 34.263 | 251 | 158 | 3 | 175 | 418 | 74 | 324 | 6.58e-45 | 159 |
| MS.gene017542.t1 | MTR_3g102520 | 33.333 | 261 | 165 | 4 | 167 | 418 | 83 | 343 | 1.73e-43 | 156 |
| MS.gene017542.t1 | MTR_3g102530 | 30.678 | 339 | 207 | 8 | 98 | 418 | 8 | 336 | 2.59e-42 | 153 |
| MS.gene017542.t1 | MTR_3g060770 | 39.623 | 212 | 121 | 3 | 207 | 411 | 60 | 271 | 1.68e-39 | 143 |
| MS.gene017542.t1 | MTR_3g102560 | 34.746 | 236 | 140 | 4 | 176 | 402 | 65 | 295 | 2.41e-39 | 144 |
| MS.gene017542.t1 | MTR_3g060410 | 37.500 | 232 | 131 | 5 | 201 | 424 | 129 | 354 | 7.48e-38 | 141 |
| MS.gene017542.t1 | MTR_3g061680 | 37.089 | 213 | 127 | 3 | 206 | 411 | 49 | 261 | 4.72e-37 | 137 |
| MS.gene017542.t1 | MTR_3g088415 | 40.000 | 175 | 101 | 3 | 148 | 321 | 216 | 387 | 1.54e-36 | 138 |
| MS.gene017542.t1 | MTR_3g060820 | 38.318 | 214 | 123 | 5 | 206 | 411 | 49 | 261 | 7.63e-36 | 133 |
| MS.gene017542.t1 | MTR_3g060400 | 37.788 | 217 | 126 | 5 | 203 | 411 | 52 | 267 | 1.67e-35 | 132 |
| MS.gene017542.t1 | MTR_3g460990 | 37.788 | 217 | 126 | 5 | 203 | 411 | 52 | 267 | 1.67e-35 | 132 |
| MS.gene017542.t1 | MTR_3g102540 | 32.287 | 223 | 137 | 4 | 203 | 418 | 40 | 255 | 6.69e-35 | 131 |
| MS.gene017542.t1 | MTR_6g045270 | 36.607 | 224 | 122 | 7 | 208 | 424 | 75 | 285 | 1.20e-32 | 126 |
| MS.gene017542.t1 | MTR_5g011900 | 33.333 | 186 | 117 | 3 | 160 | 340 | 56 | 239 | 1.52e-22 | 96.3 |
| MS.gene017542.t1 | MTR_5g044040 | 46.753 | 77 | 41 | 0 | 229 | 305 | 7 | 83 | 1.59e-17 | 79.0 |
| MS.gene017542.t1 | MTR_1g032850 | 32.967 | 182 | 118 | 3 | 208 | 386 | 372 | 552 | 1.30e-16 | 82.4 |
| MS.gene017542.t1 | MTR_5g015670 | 28.395 | 162 | 104 | 5 | 204 | 358 | 101 | 257 | 5.03e-14 | 73.6 |
| MS.gene017542.t1 | MTR_2g005960 | 33.898 | 118 | 64 | 3 | 165 | 268 | 112 | 229 | 1.39e-13 | 70.5 |
| MS.gene017542.t1 | MTR_3g103080 | 31.092 | 119 | 79 | 1 | 202 | 317 | 61 | 179 | 6.14e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017542.t1 | AT1G20610 | 56.177 | 429 | 179 | 6 | 5 | 427 | 4 | 429 | 4.65e-167 | 476 |
| MS.gene017542.t1 | AT1G76310 | 56.552 | 435 | 169 | 9 | 5 | 427 | 4 | 430 | 1.77e-164 | 470 |
| MS.gene017542.t1 | AT1G76310 | 53.132 | 463 | 169 | 10 | 5 | 427 | 4 | 458 | 8.06e-158 | 454 |
| MS.gene017542.t1 | AT2G17620 | 59.259 | 405 | 149 | 7 | 29 | 427 | 29 | 423 | 2.30e-156 | 449 |
| MS.gene017542.t1 | AT4G35620 | 57.014 | 442 | 162 | 10 | 1 | 429 | 1 | 427 | 2.67e-150 | 434 |
| MS.gene017542.t1 | AT1G76310 | 55.357 | 392 | 155 | 9 | 5 | 384 | 4 | 387 | 2.98e-140 | 406 |
| MS.gene017542.t1 | AT4G35620 | 56.818 | 396 | 144 | 9 | 1 | 384 | 1 | 381 | 1.46e-131 | 384 |
| MS.gene017542.t1 | AT1G76310 | 54.955 | 333 | 130 | 9 | 5 | 325 | 4 | 328 | 2.19e-110 | 328 |
| MS.gene017542.t1 | AT3G11520 | 40.054 | 367 | 203 | 4 | 78 | 429 | 48 | 412 | 5.05e-85 | 266 |
| MS.gene017542.t1 | AT1G20590 | 68.023 | 172 | 55 | 0 | 233 | 404 | 63 | 234 | 7.17e-84 | 258 |
| MS.gene017542.t1 | AT5G06150 | 37.076 | 383 | 202 | 5 | 78 | 427 | 57 | 433 | 8.36e-84 | 264 |
| MS.gene017542.t1 | AT2G26760 | 45.525 | 257 | 137 | 3 | 156 | 410 | 111 | 366 | 3.89e-77 | 245 |
| MS.gene017542.t1 | AT4G37490 | 44.718 | 284 | 150 | 4 | 150 | 427 | 140 | 422 | 2.24e-76 | 244 |
| MS.gene017542.t1 | AT3G11520 | 39.634 | 328 | 181 | 4 | 78 | 390 | 48 | 373 | 1.44e-73 | 236 |
| MS.gene017542.t1 | AT1G16330 | 43.728 | 279 | 155 | 1 | 144 | 422 | 366 | 642 | 3.39e-73 | 242 |
| MS.gene017542.t1 | AT5G25380 | 31.894 | 417 | 255 | 12 | 21 | 418 | 17 | 423 | 1.10e-57 | 196 |
| MS.gene017542.t1 | AT5G25380 | 31.894 | 417 | 255 | 12 | 21 | 418 | 17 | 423 | 1.10e-57 | 196 |
| MS.gene017542.t1 | AT5G25380 | 32.143 | 420 | 256 | 13 | 21 | 418 | 17 | 429 | 2.72e-57 | 195 |
| MS.gene017542.t1 | AT1G77390 | 39.033 | 269 | 156 | 4 | 158 | 419 | 162 | 429 | 5.04e-57 | 194 |
| MS.gene017542.t1 | AT5G25380 | 31.796 | 412 | 252 | 12 | 21 | 413 | 17 | 418 | 9.75e-57 | 193 |
| MS.gene017542.t1 | AT5G11300 | 43.363 | 226 | 122 | 2 | 200 | 419 | 198 | 423 | 4.73e-55 | 189 |
| MS.gene017542.t1 | AT1G44110 | 37.410 | 278 | 166 | 4 | 149 | 419 | 169 | 445 | 1.39e-54 | 188 |
| MS.gene017542.t1 | AT1G47210 | 37.329 | 292 | 171 | 6 | 136 | 418 | 66 | 354 | 3.55e-54 | 185 |
| MS.gene017542.t1 | AT5G06150 | 48.571 | 175 | 87 | 2 | 158 | 332 | 165 | 336 | 9.93e-54 | 182 |
| MS.gene017542.t1 | AT5G43080 | 37.398 | 246 | 152 | 2 | 175 | 418 | 87 | 332 | 1.02e-53 | 183 |
| MS.gene017542.t1 | AT1G15570 | 38.433 | 268 | 157 | 4 | 158 | 418 | 172 | 438 | 4.81e-52 | 181 |
| MS.gene017542.t1 | AT5G43080 | 36.653 | 251 | 152 | 3 | 175 | 418 | 87 | 337 | 1.51e-51 | 177 |
| MS.gene017542.t1 | AT1G80370 | 38.060 | 268 | 158 | 4 | 158 | 418 | 181 | 447 | 1.48e-50 | 177 |
| MS.gene017542.t1 | AT1G47220 | 35.548 | 301 | 173 | 7 | 138 | 418 | 9 | 308 | 8.87e-50 | 172 |
| MS.gene017542.t1 | AT1G47230 | 36.863 | 255 | 148 | 5 | 175 | 418 | 95 | 347 | 3.37e-49 | 171 |
| MS.gene017542.t1 | AT5G11300 | 48.045 | 179 | 87 | 2 | 200 | 372 | 198 | 376 | 6.14e-49 | 172 |
| MS.gene017542.t1 | AT1G47230 | 36.719 | 256 | 148 | 6 | 175 | 418 | 95 | 348 | 1.97e-47 | 167 |
| MS.gene017542.t1 | AT1G34460 | 32.450 | 302 | 142 | 9 | 35 | 322 | 142 | 395 | 1.77e-37 | 142 |
| MS.gene017542.t1 | AT1G34460 | 32.450 | 302 | 142 | 9 | 35 | 322 | 142 | 395 | 1.77e-37 | 142 |
| MS.gene017542.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 128 | 384 | 6.28e-37 | 141 |
| MS.gene017542.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 6.76e-37 | 141 |
| MS.gene017542.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 6.76e-37 | 141 |
| MS.gene017542.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 6.76e-37 | 141 |
| MS.gene017542.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 6.76e-37 | 141 |
| MS.gene017542.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 7.12e-37 | 141 |
| MS.gene017542.t1 | AT1G34460 | 32.131 | 305 | 142 | 9 | 35 | 322 | 142 | 398 | 8.02e-37 | 141 |
| MS.gene017542.t1 | AT1G14750 | 31.381 | 239 | 156 | 5 | 151 | 386 | 335 | 568 | 1.15e-20 | 95.1 |
| MS.gene017542.t1 | AT1G14750 | 31.381 | 239 | 156 | 5 | 151 | 386 | 335 | 568 | 1.38e-20 | 94.7 |
| MS.gene017542.t1 | AT1G14750 | 31.381 | 239 | 156 | 5 | 151 | 386 | 167 | 400 | 1.87e-20 | 93.2 |
| MS.gene017542.t1 | AT1G14750 | 31.381 | 239 | 155 | 6 | 151 | 386 | 167 | 399 | 2.75e-19 | 89.7 |
| MS.gene017542.t1 | AT1G47210 | 37.692 | 130 | 75 | 4 | 136 | 262 | 66 | 192 | 2.48e-17 | 80.5 |
Find 0 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTAAAGATTTGAATT+GGG | + | 57641:353258-353277 | MS.gene017542:intron | 10.0% |
| !! | TTAAATTTAAAGATTTGAAT+TGG | + | 57641:353257-353276 | MS.gene017542:intron | 10.0% |
| !!! | ACAAATTTTGATATTTATTA+TGG | + | 57641:354986-355005 | MS.gene017542:intron | 10.0% |
| !!! | TTTTTTTATGATTATTAGTT+CGG | + | 57641:353507-353526 | MS.gene017542:intron | 10.0% |
| !! | AATAATTTCATTTGACAATA+AGG | - | 57641:353901-353920 | None:intergenic | 15.0% |
| !!! | AATTTTGAAATTGAATATCA+TGG | + | 57641:353868-353887 | MS.gene017542:intron | 15.0% |
| !!! | AATTTTGAAATTTAATGTCA+TGG | + | 57641:353708-353727 | MS.gene017542:intron | 15.0% |
| !!! | CTAAAATCATATTTTTAAGT+TGG | + | 57641:355326-355345 | MS.gene017542:intron | 15.0% |
| !!! | GATTCAAAATTAGTTTTTTA+TGG | + | 57641:353232-353251 | MS.gene017542:intron | 15.0% |
| !!! | TTGAATCTTTTTTGAATTTT+AGG | + | 57641:353292-353311 | MS.gene017542:intron | 15.0% |
| !!! | TTTAAAATTCCAATATAATC+CGG | - | 57641:354713-354732 | None:intergenic | 15.0% |
| !! | AATTGTCAAGTGAAATTATA+GGG | + | 57641:353743-353762 | MS.gene017542:intron | 20.0% |
| !! | ACAAAGATATCAATAATTTG+AGG | - | 57641:355567-355586 | None:intergenic | 20.0% |
| !! | ATGATTTATGTAATGAAATG+AGG | + | 57641:354147-354166 | MS.gene017542:intron | 20.0% |
| !! | ATGGAATTATTATTAAGCTT+AGG | + | 57641:355068-355087 | MS.gene017542:intron | 20.0% |
| !! | ATGTTGATGTATTGTTAATT+AGG | + | 57641:354185-354204 | MS.gene017542:intron | 20.0% |
| !! | ATTAGTTACATTGAATTGAA+CGG | - | 57641:355953-355972 | None:intergenic | 20.0% |
| !! | ATTTCATTACATAAATCATG+GGG | - | 57641:354146-354165 | None:intergenic | 20.0% |
| !! | CATTTCATTACATAAATCAT+GGG | - | 57641:354147-354166 | None:intergenic | 20.0% |
| !! | TAATTGTCAAGTGAAATTAT+AGG | + | 57641:353742-353761 | MS.gene017542:intron | 20.0% |
| !! | TCATTTCATTACATAAATCA+TGG | - | 57641:354148-354167 | None:intergenic | 20.0% |
| !! | TGAATTGTCAAATGAAATTA+TGG | + | 57641:354061-354080 | MS.gene017542:intron | 20.0% |
| !! | TGTGAAAAATTATTACAAGA+TGG | - | 57641:355874-355893 | None:intergenic | 20.0% |
| !! | TTAAACTAAATTCTGAATCA+TGG | + | 57641:354313-354332 | MS.gene017542:intron | 20.0% |
| !!! | AAATTTTGATTGGAACATAA+AGG | + | 57641:353185-353204 | MS.gene017542:intron | 20.0% |
| !!! | AATCTTTTTTGAATTTTAGG+AGG | + | 57641:353295-353314 | MS.gene017542:intron | 20.0% |
| !!! | TACATTGTTGAAATTTTGAT+TGG | + | 57641:353175-353194 | MS.gene017542:intron | 20.0% |
| !!! | TATCTTTGTCATTTAATAAC+CGG | + | 57641:355578-355597 | MS.gene017542:intron | 20.0% |
| !!! | TATTATACTTTTGATTCGAT+TGG | - | 57641:355378-355397 | None:intergenic | 20.0% |
| !!! | TCATATTTTTAAGTTGGTTT+TGG | + | 57641:355332-355351 | MS.gene017542:intron | 20.0% |
| !!! | TGGAATTTTAAACTTCATAT+TGG | + | 57641:354721-354740 | MS.gene017542:intron | 20.0% |
| ! | AAGCATATCAATATTTAAGC+CGG | - | 57641:355600-355619 | None:intergenic | 25.0% |
| ! | AAGTTGTTTATGCTTTAACA+TGG | + | 57641:356497-356516 | MS.gene017542:intron | 25.0% |
| ! | AATATCTAACACTGTTATGT+TGG | + | 57641:355220-355239 | MS.gene017542:intron | 25.0% |
| ! | ATATCAATGATCTTACAAGT+TGG | + | 57641:355112-355131 | MS.gene017542:intron | 25.0% |
| ! | ATTAGTTGCATTGAATTGAA+CGG | - | 57641:355907-355926 | None:intergenic | 25.0% |
| ! | TAAAATAATACCATCTCAAG+TGG | - | 57641:354484-354503 | None:intergenic | 25.0% |
| ! | TATGACTTATGAAACTCATT+TGG | - | 57641:356122-356141 | None:intergenic | 25.0% |
| ! | TCAATTTCAAACATGTAGAT+TGG | + | 57641:353769-353788 | MS.gene017542:intron | 25.0% |
| ! | TGAAATTGAATATCATGGAA+TGG | + | 57641:353873-353892 | MS.gene017542:intron | 25.0% |
| ! | TTATTAGTTCGGTTTCTTTA+AGG | + | 57641:353518-353537 | MS.gene017542:intron | 25.0% |
| ! | TTGATGTATTGTTAATTAGG+AGG | + | 57641:354188-354207 | MS.gene017542:intron | 25.0% |
| !! | AATGTACCTTGAAATTTTCT+TGG | - | 57641:353161-353180 | None:intergenic | 25.0% |
| !! | ATAGAACTTTTCACATTTGT+TGG | + | 57641:355925-355944 | MS.gene017542:intron | 25.0% |
| !! | GCAATTTTATTGTAGATTTG+AGG | + | 57641:355030-355049 | MS.gene017542:intron | 25.0% |
| !! | TTATACATTTTCACCTATCT+CGG | - | 57641:355300-355319 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTTTGTTGTTGTT+GGG | + | 57641:353660-353679 | MS.gene017542:intron | 25.0% |
| !!! | TCAATTTCAAACTTGTTGAT+TGG | + | 57641:354089-354108 | MS.gene017542:intron | 25.0% |
| !!! | TGTTTTCTTTTGTTGTTGTT+AGG | + | 57641:353981-354000 | MS.gene017542:intron | 25.0% |
| !!! | TGTTTTGTTTTTGTTGTTGT+TGG | + | 57641:353659-353678 | MS.gene017542:intron | 25.0% |
| !!! | TTAAGGTTAATTGTTTTGTC+TGG | + | 57641:353535-353554 | MS.gene017542:intron | 25.0% |
| !!! | TTTTGTTTTCGATTGTAGAT+TGG | + | 57641:353919-353938 | MS.gene017542:intron | 25.0% |
| AACTTGCAAGTTGTAAAACT+TGG | + | 57641:354946-354965 | MS.gene017542:intron | 30.0% | |
| AGATCATTGATATTCGAATC+AGG | - | 57641:355105-355124 | None:intergenic | 30.0% | |
| CACTTGACAATTAAGTAACA+TGG | - | 57641:353735-353754 | None:intergenic | 30.0% | |
| CATTTGACAATTCAGTACAA+TGG | - | 57641:354055-354074 | None:intergenic | 30.0% | |
| GAGATACAAGGAACAATAAA+TGG | - | 57641:355253-355272 | None:intergenic | 30.0% | |
| GATCATTGATATTCGAATCA+GGG | - | 57641:355104-355123 | None:intergenic | 30.0% | |
| GCACTGTTTCGATAATTAAA+CGG | + | 57641:356414-356433 | MS.gene017542:intron | 30.0% | |
| GGAAACATTTGATCGAAAAT+TGG | + | 57641:353681-353700 | MS.gene017542:intron | 30.0% | |
| GTTATGCCAAGAAAATTTCA+AGG | + | 57641:353152-353171 | MS.gene017542:CDS | 30.0% | |
| TAACTTGAGTTCATCATCAA+TGG | - | 57641:354404-354423 | None:intergenic | 30.0% | |
| TAATCTCATAGACAGATTCT+TGG | + | 57641:355683-355702 | MS.gene017542:CDS | 30.0% | |
| TCACAAAACTAACTTCTATC+AGG | - | 57641:354749-354768 | None:intergenic | 30.0% | |
| TCTTCCTAAAAAGTAGTACA+AGG | - | 57641:354566-354585 | None:intergenic | 30.0% | |
| TGAGATTTGTGAAAAGAAAC+AGG | + | 57641:353587-353606 | MS.gene017542:CDS | 30.0% | |
| TGATTGGAACATAAAGGAAA+AGG | + | 57641:353191-353210 | MS.gene017542:intron | 30.0% | |
| ! | AGATATCAATAATTTGAGGC+AGG | - | 57641:355563-355582 | None:intergenic | 30.0% |
| ! | ATCAATCAGAATTTTGTGCA+TGG | + | 57641:353382-353401 | MS.gene017542:CDS | 30.0% |
| ! | GAGGTTGATTATCTTTACAA+TGG | + | 57641:355049-355068 | MS.gene017542:intron | 30.0% |
| !!! | CATTAGTCTGCTTTTTTGTA+TGG | + | 57641:354798-354817 | MS.gene017542:intron | 30.0% |
| !!! | TTGTACTACTTTTTAGGAAG+AGG | + | 57641:354565-354584 | MS.gene017542:intron | 30.0% |
| AAGGAAAGACATTCTCGAAA+TGG | + | 57641:355836-355855 | MS.gene017542:CDS | 35.0% | |
| AATTCAATCACTGTCAAGTG+TGG | - | 57641:354888-354907 | None:intergenic | 35.0% | |
| ATGCTTGCTTGATTGATATC+AGG | + | 57641:355614-355633 | MS.gene017542:intron | 35.0% | |
| ATTGATATTCGAATCAGGGT+TGG | - | 57641:355100-355119 | None:intergenic | 35.0% | |
| CAATCTTTCTGTAGTAAGCA+TGG | - | 57641:354685-354704 | None:intergenic | 35.0% | |
| CAATTCAGTACAATGGTCTA+TGG | - | 57641:354048-354067 | None:intergenic | 35.0% | |
| CCAAACTCATTCGAATTCAA+TGG | - | 57641:354370-354389 | None:intergenic | 35.0% | |
| CCATTGAATTCGAATGAGTT+TGG | + | 57641:354367-354386 | MS.gene017542:CDS | 35.0% | |
| CTCATGAAAACATAAGCAGT+TGG | - | 57641:356046-356065 | None:intergenic | 35.0% | |
| GACGACATATATTGCAGATT+TGG | - | 57641:355143-355162 | None:intergenic | 35.0% | |
| GCAGTAAAGTATGAGATACA+AGG | - | 57641:355265-355284 | None:intergenic | 35.0% | |
| TAGTGGCTAATTGAAAAGAG+AGG | - | 57641:356392-356411 | None:intergenic | 35.0% | |
| TGAACACTATCTATCAAGTG+TGG | - | 57641:355195-355214 | None:intergenic | 35.0% | |
| TGCTTACTACAGAAAGATTG+AGG | + | 57641:354685-354704 | MS.gene017542:CDS | 35.0% | |
| TGTAAGAAAGAAACTTCAGC+TGG | + | 57641:355719-355738 | MS.gene017542:CDS | 35.0% | |
| TTAGGAGGAATGAATCAAGT+GGG | + | 57641:353310-353329 | MS.gene017542:intron | 35.0% | |
| TTGTAGATTGGTGCAGATTA+AGG | + | 57641:353931-353950 | MS.gene017542:intron | 35.0% | |
| TTTAGGAGGAATGAATCAAG+TGG | + | 57641:353309-353328 | MS.gene017542:intron | 35.0% | |
| TTTCATGAGAAGGTTTCTGA+AGG | + | 57641:356057-356076 | MS.gene017542:CDS | 35.0% | |
| ! | CTCTTTTCAATTAGCCACTA+GGG | + | 57641:356392-356411 | MS.gene017542:intron | 35.0% |
| ! | CTGCTTATGTTTTCATGAGA+AGG | + | 57641:356047-356066 | MS.gene017542:CDS | 35.0% |
| ! | TATAGAGGGAGAGATGATTT+TGG | + | 57641:354601-354620 | MS.gene017542:CDS | 35.0% |
| ! | TCTCTTTTCAATTAGCCACT+AGG | + | 57641:356391-356410 | MS.gene017542:intron | 35.0% |
| !! | AAACAATTCTCTTGCTGTTG+TGG | + | 57641:354643-354662 | MS.gene017542:CDS | 35.0% |
| !! | ATTGAGGTACCGGATTATAT+TGG | + | 57641:354701-354720 | MS.gene017542:intron | 35.0% |
| !! | TTTTTAGGAAGAGGTTGAGA+TGG | + | 57641:354574-354593 | MS.gene017542:intron | 35.0% |
| !!! | GTTGATTGGTGCTGATTTTT+GGG | + | 57641:354103-354122 | MS.gene017542:intron | 35.0% |
| !!! | TATTTTGAAACAGCTTGAGC+TGG | + | 57641:356182-356201 | MS.gene017542:intron | 35.0% |
| !!! | TGTTGATTGGTGCTGATTTT+TGG | + | 57641:354102-354121 | MS.gene017542:intron | 35.0% |
| !!! | TTCGCCTTGTACTACTTTTT+AGG | + | 57641:354559-354578 | MS.gene017542:intron | 35.0% |
| !!! | TTGATTGGTGCTGATTTTTG+GGG | + | 57641:354104-354123 | MS.gene017542:intron | 35.0% |
| AACAACTTGACCTCAATGAG+AGG | + | 57641:355488-355507 | MS.gene017542:CDS | 40.0% | |
| AAGAGAAACTACCTCAGCAT+AGG | - | 57641:354245-354264 | None:intergenic | 40.0% | |
| AGAAAGAAACTTCAGCTGGT+TGG | + | 57641:355723-355742 | MS.gene017542:CDS | 40.0% | |
| AGTTGTTCATCCATGTAGGT+TGG | - | 57641:355475-355494 | None:intergenic | 40.0% | |
| ATACTTGCATGCCAAAAGCA+TGG | - | 57641:355757-355776 | None:intergenic | 40.0% | |
| ATTACCTTCCTGCAGTATCT+TGG | + | 57641:355439-355458 | MS.gene017542:intron | 40.0% | |
| CTACAGAAAGATTGAGGTAC+CGG | + | 57641:354691-354710 | MS.gene017542:intron | 40.0% | |
| CTATCCAATGATTCCGAGAT+AGG | + | 57641:355284-355303 | MS.gene017542:intron | 40.0% | |
| GAAAAGAAACAGGCTGATCT+GGG | + | 57641:353597-353616 | MS.gene017542:CDS | 40.0% | |
| GATTTCTTTCCAAACACCGT+AGG | + | 57641:355979-355998 | MS.gene017542:intron | 40.0% | |
| GTTGAGATGGAGGATATAGA+GGG | + | 57641:354587-354606 | MS.gene017542:CDS | 40.0% | |
| TCAAACATGTAGATTGGTGC+TGG | + | 57641:353775-353794 | MS.gene017542:intron | 40.0% | |
| TCAAGTGGATCACTATGCAT+TGG | - | 57641:354469-354488 | None:intergenic | 40.0% | |
| TCAGTATGCTCCAAAGTCAT+AGG | - | 57641:354445-354464 | None:intergenic | 40.0% | |
| TGAAAAGAAACAGGCTGATC+TGG | + | 57641:353596-353615 | MS.gene017542:CDS | 40.0% | |
| TGTAAGCTCTGTCAGCTATA+TGG | - | 57641:355815-355834 | None:intergenic | 40.0% | |
| TTCACCTATCTCGGAATCAT+TGG | - | 57641:355291-355310 | None:intergenic | 40.0% | |
| TTCTCCAGAAGAAAACATGC+TGG | - | 57641:356667-356686 | None:intergenic | 40.0% | |
| TTGTGTACAACACAAGGGTA+AGG | - | 57641:353412-353431 | None:intergenic | 40.0% | |
| TTTCTTGGTTGAGCTATCTC+TGG | + | 57641:356212-356231 | MS.gene017542:CDS | 40.0% | |
| ! | GTCAAGTTGTTCATCCATGT+AGG | - | 57641:355479-355498 | None:intergenic | 40.0% |
| ! | TGAACCAGCATGTTTTCTTC+TGG | + | 57641:356660-356679 | MS.gene017542:CDS | 40.0% |
| ! | TTGCGCTTTTGCATGTAAAG+CGG | + | 57641:354853-354872 | MS.gene017542:intron | 40.0% |
| ! | TTTTCTTGGCATAACTGCGT+TGG | - | 57641:353147-353166 | None:intergenic | 40.0% |
| !! | AGAACAGAAGAGCTTTAGGA+GGG | + | 57641:353359-353378 | MS.gene017542:CDS | 40.0% |
| !! | ATGGTGGTGGAAGAATTGTT+GGG | + | 57641:353335-353354 | MS.gene017542:CDS | 40.0% |
| AAACACAGCCAAGATACTGC+AGG | - | 57641:355450-355469 | None:intergenic | 45.0% | |
| ACCCTCTTGTGTACAACACA+AGG | - | 57641:353418-353437 | None:intergenic | 45.0% | |
| ACCCTTGTGTTGTACACAAG+AGG | + | 57641:353413-353432 | MS.gene017542:CDS | 45.0% | |
| ATGAATCAAGTGGGTCATGG+TGG | + | 57641:353319-353338 | MS.gene017542:CDS | 45.0% | |
| CATCATCCTCACCTTGTGAT+GGG | - | 57641:353630-353649 | None:intergenic | 45.0% | |
| CCCTCTTGTGTACAACACAA+GGG | - | 57641:353417-353436 | None:intergenic | 45.0% | |
| CCCTTGTGTTGTACACAAGA+GGG | + | 57641:353414-353433 | MS.gene017542:CDS | 45.0% | |
| CTGTCAGTGGTTTCAAACAC+TGG | + | 57641:356304-356323 | MS.gene017542:CDS | 45.0% | |
| CTGTGTTTCACCAACCTACA+TGG | + | 57641:355462-355481 | MS.gene017542:CDS | 45.0% | |
| GAAACAGTGTCTCTTGCATG+AGG | - | 57641:355656-355675 | None:intergenic | 45.0% | |
| GAGTTCATCATCAATGGCGA+TGG | - | 57641:354398-354417 | None:intergenic | 45.0% | |
| GCATAGTGATCCACTTGAGA+TGG | + | 57641:354471-354490 | MS.gene017542:CDS | 45.0% | |
| GGAATGAATCAAGTGGGTCA+TGG | + | 57641:353316-353335 | MS.gene017542:CDS | 45.0% | |
| GGTTGAGATGGAGGATATAG+AGG | + | 57641:354586-354605 | MS.gene017542:CDS | 45.0% | |
| TAGCTGACAGAGCTTACACA+AGG | + | 57641:355817-355836 | MS.gene017542:CDS | 45.0% | |
| TGACCTCAATGAGAGGATGA+GGG | + | 57641:355495-355514 | MS.gene017542:CDS | 45.0% | |
| TGAGGGCTATACTAGTTGAC+TGG | + | 57641:355512-355531 | MS.gene017542:CDS | 45.0% | |
| TTAGGAAGAGGTTGAGATGG+AGG | + | 57641:354577-354596 | MS.gene017542:intron | 45.0% | |
| TTATCGAAACAGTGCCCTAG+TGG | - | 57641:356409-356428 | None:intergenic | 45.0% | |
| TTGACCTCAATGAGAGGATG+AGG | + | 57641:355494-355513 | MS.gene017542:CDS | 45.0% | |
| ! | ACAGGAGTGCATAGGAAGTA+TGG | + | 57641:356607-356626 | MS.gene017542:CDS | 45.0% |
| ! | ACTAGTTGACTGGCTGATTG+AGG | + | 57641:355522-355541 | MS.gene017542:CDS | 45.0% |
| ! | AGTTTCTGTGCCTGTCGTTT+CGG | + | 57641:355782-355801 | MS.gene017542:CDS | 45.0% |
| ! | GCTTTTGGCATGCAAGTATG+AGG | + | 57641:355758-355777 | MS.gene017542:CDS | 45.0% |
| ! | TTTGAAACAGCTTGAGCTGG+TGG | + | 57641:356185-356204 | MS.gene017542:intron | 45.0% |
| !! | AGGTTTGCTGCACAAATTGC+TGG | + | 57641:354208-354227 | MS.gene017542:CDS | 45.0% |
| !! | CAGAACAGAAGAGCTTTAGG+AGG | + | 57641:353358-353377 | MS.gene017542:CDS | 45.0% |
| !! | CATGGTGGTGGAAGAATTGT+TGG | + | 57641:353334-353353 | MS.gene017542:CDS | 45.0% |
| !! | TAGAGAGTGCTCTATGCTGA+TGG | + | 57641:356549-356568 | MS.gene017542:intron | 45.0% |
| !! | TTGAGCATCGACTTCTCCTA+CGG | - | 57641:355998-356017 | None:intergenic | 45.0% |
| !!! | TGAGCTGGTGGCTTTTTTCT+TGG | + | 57641:356197-356216 | MS.gene017542:CDS | 45.0% |
| !!! | TGGTCTTGTTGCCATGCTTT+TGG | + | 57641:355743-355762 | MS.gene017542:CDS | 45.0% |
| AATCAAGTGGGTCATGGTGG+TGG | + | 57641:353322-353341 | MS.gene017542:CDS | 50.0% | |
| ACAGCCAAGATACTGCAGGA+AGG | - | 57641:355446-355465 | None:intergenic | 50.0% | |
| ACAGCTCAATGCACTGTCAG+TGG | + | 57641:356291-356310 | MS.gene017542:CDS | 50.0% | |
| ACTGGAACAAGACATGCGAG+TGG | + | 57641:356322-356341 | MS.gene017542:CDS | 50.0% | |
| ATGCACTCCTGTCAGTTTCC+CGG | - | 57641:356599-356618 | None:intergenic | 50.0% | |
| CATAGACCCATCACAAGGTG+AGG | + | 57641:353621-353640 | MS.gene017542:intron | 50.0% | |
| CCAACCAGAGCCTATGACTT+TGG | + | 57641:354432-354451 | MS.gene017542:CDS | 50.0% | |
| CTCACAGCAATCCTATGCTG+AGG | + | 57641:354231-354250 | MS.gene017542:CDS | 50.0% | |
| CTTGGTTGAGCTATCTCTGG+TGG | + | 57641:356215-356234 | MS.gene017542:CDS | 50.0% | |
| GAGTGCTCTATGCTGATGGT+TGG | + | 57641:356553-356572 | MS.gene017542:CDS | 50.0% | |
| GCATCATCCTCACCTTGTGA+TGG | - | 57641:353631-353650 | None:intergenic | 50.0% | |
| GCTGAAGTTTCCACCATCCT+TGG | + | 57641:356248-356267 | MS.gene017542:CDS | 50.0% | |
| GGGCAGAACAGAAGAGCTTT+AGG | + | 57641:353355-353374 | MS.gene017542:CDS | 50.0% | |
| GTTGGATTCCACCAGAAAGC+CGG | + | 57641:356571-356590 | MS.gene017542:CDS | 50.0% | |
| TAGCCCTCATCCTCTCATTG+AGG | - | 57641:355501-355520 | None:intergenic | 50.0% | |
| TCGACTTCTCCTACGGTGTT+TGG | - | 57641:355991-356010 | None:intergenic | 50.0% | |
| TGCTCCAAAGTCATAGGCTC+TGG | - | 57641:354439-354458 | None:intergenic | 50.0% | |
| TGGATCAGATCCGAAACGAC+AGG | - | 57641:355795-355814 | None:intergenic | 50.0% | |
| TGGGACATAGACCCATCACA+AGG | + | 57641:353616-353635 | MS.gene017542:CDS | 50.0% | |
| ! | CCAAAGTCATAGGCTCTGGT+TGG | - | 57641:354435-354454 | None:intergenic | 50.0% |
| ! | GGAAACTGACAGGAGTGCAT+AGG | + | 57641:356599-356618 | MS.gene017542:CDS | 50.0% |
| !! | ATAGGCTCTGGTTGGTCTTC+TGG | - | 57641:354427-354446 | None:intergenic | 50.0% |
| GACTGCAGCAGCAGCAACCA+AGG | - | 57641:356268-356287 | None:intergenic | 60.0% | |
| GCAGCAGCAACCAAGGATGG+TGG | - | 57641:356261-356280 | None:intergenic | 60.0% | |
| GCAGCAGCAGCAACCAAGGA+TGG | - | 57641:356264-356283 | None:intergenic | 60.0% | |
| TCCTGTCAGTTTCCCGGCTC+CGG | - | 57641:356593-356612 | None:intergenic | 60.0% | |
| TTCCACCAGAAAGCCGGAGC+CGG | + | 57641:356577-356596 | MS.gene017542:CDS | 60.0% | |
| GTTTCCCGGCTCCGGCTTTC+TGG | - | 57641:356585-356604 | None:intergenic | 65.0% | |
| TCCACCAGAAAGCCGGAGCC+GGG | + | 57641:356578-356597 | MS.gene017542:CDS | 65.0% | |
| GCCGGAGCCGGGAAACTGAC+AGG | + | 57641:356589-356608 | MS.gene017542:CDS | 70.0% | |
| TCCCGGCTCCGGCTTTCTGG+TGG | - | 57641:356582-356601 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57641 | gene | 353116 | 356702 | 353116 | ID=MS.gene017542 |
| 57641 | mRNA | 353116 | 356702 | 353116 | ID=MS.gene017542.t1;Parent=MS.gene017542 |
| 57641 | exon | 353116 | 353173 | 353116 | ID=MS.gene017542.t1.exon1;Parent=MS.gene017542.t1 |
| 57641 | CDS | 353116 | 353173 | 353116 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 353314 | 353446 | 353314 | ID=MS.gene017542.t1.exon2;Parent=MS.gene017542.t1 |
| 57641 | CDS | 353314 | 353446 | 353314 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 353581 | 353637 | 353581 | ID=MS.gene017542.t1.exon3;Parent=MS.gene017542.t1 |
| 57641 | CDS | 353581 | 353637 | 353581 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 354207 | 354252 | 354207 | ID=MS.gene017542.t1.exon4;Parent=MS.gene017542.t1 |
| 57641 | CDS | 354207 | 354252 | 354207 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 354352 | 354492 | 354352 | ID=MS.gene017542.t1.exon5;Parent=MS.gene017542.t1 |
| 57641 | CDS | 354352 | 354492 | 354352 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 354581 | 354706 | 354581 | ID=MS.gene017542.t1.exon6;Parent=MS.gene017542.t1 |
| 57641 | CDS | 354581 | 354706 | 354581 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 355454 | 355543 | 355454 | ID=MS.gene017542.t1.exon7;Parent=MS.gene017542.t1 |
| 57641 | CDS | 355454 | 355543 | 355454 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 355636 | 355857 | 355636 | ID=MS.gene017542.t1.exon8;Parent=MS.gene017542.t1 |
| 57641 | CDS | 355636 | 355857 | 355636 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 356001 | 356099 | 356001 | ID=MS.gene017542.t1.exon9;Parent=MS.gene017542.t1 |
| 57641 | CDS | 356001 | 356099 | 356001 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 356195 | 356373 | 356195 | ID=MS.gene017542.t1.exon10;Parent=MS.gene017542.t1 |
| 57641 | CDS | 356195 | 356373 | 356195 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| 57641 | exon | 356552 | 356702 | 356552 | ID=MS.gene017542.t1.exon11;Parent=MS.gene017542.t1 |
| 57641 | CDS | 356552 | 356702 | 356552 | ID=cds.MS.gene017542.t1;Parent=MS.gene017542.t1 |
| Gene Sequence |
| Protein sequence |
