Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64859.t1 | CAA55272.1 | 98 | 353 | 7 | 0 | 10 | 362 | 76 | 428 | 7.60E-180 | 639.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64859.t1 | P46277 | 96.3 | 353 | 13 | 0 | 10 | 362 | 76 | 428 | 7.2e-179 | 627.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64859.t1 | Q40337 | 98.0 | 353 | 7 | 0 | 10 | 362 | 76 | 428 | 5.5e-180 | 639.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049397 | MS.gene64859 | 0.805721 | 1.16E-49 | -1.69E-46 |
MS.gene049596 | MS.gene64859 | 0.813512 | 2.47E-51 | -1.69E-46 |
MS.gene049989 | MS.gene64859 | 0.886417 | 3.48E-72 | -1.69E-46 |
MS.gene050297 | MS.gene64859 | 0.889237 | 2.90E-73 | -1.69E-46 |
MS.gene05054 | MS.gene64859 | 0.801647 | 8.16E-49 | -1.69E-46 |
MS.gene050648 | MS.gene64859 | 0.834796 | 2.44E-56 | -1.69E-46 |
MS.gene051094 | MS.gene64859 | 0.836333 | 9.95E-57 | -1.69E-46 |
MS.gene05124 | MS.gene64859 | 0.821198 | 4.59E-53 | -1.69E-46 |
MS.gene051263 | MS.gene64859 | 0.838196 | 3.32E-57 | -1.69E-46 |
MS.gene051478 | MS.gene64859 | 0.803959 | 2.72E-49 | -1.69E-46 |
MS.gene051629 | MS.gene64859 | 0.818645 | 1.76E-52 | -1.69E-46 |
MS.gene051742 | MS.gene64859 | 0.837849 | 4.08E-57 | -1.69E-46 |
MS.gene051816 | MS.gene64859 | 0.811372 | 7.24E-51 | -1.69E-46 |
MS.gene051955 | MS.gene64859 | 0.855155 | 7.63E-62 | -1.69E-46 |
MS.gene052143 | MS.gene64859 | 0.856299 | 3.53E-62 | -1.69E-46 |
MS.gene052308 | MS.gene64859 | 0.836028 | 1.19E-56 | -1.69E-46 |
MS.gene052367 | MS.gene64859 | 0.901622 | 2.23E-78 | -1.69E-46 |
MS.gene053173 | MS.gene64859 | 0.834892 | 2.30E-56 | -1.69E-46 |
MS.gene053348 | MS.gene64859 | 0.831332 | 1.77E-55 | -1.69E-46 |
MS.gene053416 | MS.gene64859 | 0.858708 | 6.84E-63 | -1.69E-46 |
MS.gene053417 | MS.gene64859 | 0.858786 | 6.49E-63 | -1.69E-46 |
MS.gene05369 | MS.gene64859 | 0.85565 | 5.47E-62 | -1.69E-46 |
MS.gene054551 | MS.gene64859 | 0.839705 | 1.35E-57 | -1.69E-46 |
MS.gene054593 | MS.gene64859 | 0.843746 | 1.16E-58 | -1.69E-46 |
MS.gene054643 | MS.gene64859 | 0.818861 | 1.57E-52 | -1.69E-46 |
MS.gene054885 | MS.gene64859 | 0.806811 | 6.86E-50 | -1.69E-46 |
MS.gene055308 | MS.gene64859 | 0.847928 | 8.48E-60 | -1.69E-46 |
MS.gene055578 | MS.gene64859 | 0.828351 | 9.43E-55 | -1.69E-46 |
MS.gene055579 | MS.gene64859 | 0.805418 | 1.35E-49 | -1.69E-46 |
MS.gene055957 | MS.gene64859 | 0.84862 | 5.46E-60 | -1.69E-46 |
MS.gene056041 | MS.gene64859 | 0.883036 | 6.30E-71 | -1.69E-46 |
MS.gene056042 | MS.gene64859 | 0.858831 | 6.29E-63 | -1.69E-46 |
MS.gene05640 | MS.gene64859 | 0.825326 | 4.98E-54 | -1.69E-46 |
MS.gene056526 | MS.gene64859 | 0.88929 | 2.77E-73 | -1.69E-46 |
MS.gene056528 | MS.gene64859 | 0.821928 | 3.11E-53 | -1.69E-46 |
MS.gene057458 | MS.gene64859 | 0.844458 | 7.47E-59 | -1.69E-46 |
MS.gene057483 | MS.gene64859 | 0.821041 | 4.99E-53 | -1.69E-46 |
MS.gene058196 | MS.gene64859 | 0.840049 | 1.10E-57 | -1.69E-46 |
MS.gene058197 | MS.gene64859 | 0.848528 | 5.79E-60 | -1.69E-46 |
MS.gene058198 | MS.gene64859 | 0.847834 | 9.00E-60 | -1.69E-46 |
MS.gene058818 | MS.gene64859 | 0.820354 | 7.17E-53 | -1.69E-46 |
MS.gene058827 | MS.gene64859 | 0.807681 | 4.49E-50 | -1.69E-46 |
MS.gene058844 | MS.gene64859 | 0.81284 | 3.46E-51 | -1.69E-46 |
MS.gene058853 | MS.gene64859 | 0.810563 | 1.08E-50 | -1.69E-46 |
MS.gene059300 | MS.gene64859 | 0.872523 | 2.98E-67 | -1.69E-46 |
MS.gene059553 | MS.gene64859 | 0.854625 | 1.09E-61 | -1.69E-46 |
MS.gene060473 | MS.gene64859 | 0.894183 | 3.13E-75 | -1.69E-46 |
MS.gene060565 | MS.gene64859 | 0.89601 | 5.56E-76 | -1.69E-46 |
MS.gene06057 | MS.gene64859 | 0.872061 | 4.25E-67 | -1.69E-46 |
MS.gene06093 | MS.gene64859 | 0.865104 | 7.52E-65 | -1.69E-46 |
MS.gene061099 | MS.gene64859 | 0.849702 | 2.73E-60 | -1.69E-46 |
MS.gene061260 | MS.gene64859 | 0.879961 | 8.13E-70 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene072952 | MS.gene64859 | PPI |
MS.gene27222 | MS.gene64859 | PPI |
MS.gene017542 | MS.gene64859 | PPI |
MS.gene64859 | MS.gene028366 | PPI |
MS.gene64859 | MS.gene71482 | PPI |
MS.gene55900 | MS.gene64859 | PPI |
MS.gene021632 | MS.gene64859 | PPI |
MS.gene072954 | MS.gene64859 | PPI |
MS.gene64859 | MS.gene000462 | PPI |
MS.gene64859 | MS.gene23792 | PPI |
MS.gene28739 | MS.gene64859 | PPI |
MS.gene014786 | MS.gene64859 | PPI |
MS.gene072956 | MS.gene64859 | PPI |
MS.gene013970 | MS.gene64859 | PPI |
MS.gene36424 | MS.gene64859 | PPI |
MS.gene64859 | MS.gene58835 | PPI |
MS.gene017692 | MS.gene64859 | PPI |
MS.gene64859 | MS.gene072963 | PPI |
MS.gene015942 | MS.gene64859 | PPI |
MS.gene67884 | MS.gene64859 | PPI |
MS.gene067143 | MS.gene64859 | PPI |
MS.gene64859 | MS.gene00063 | PPI |
MS.gene64859 | MS.gene017693 | PPI |
MS.gene067144 | MS.gene64859 | PPI |
MS.gene35086 | MS.gene64859 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64859.t1 | MTR_5g023790 | 97.727 | 352 | 8 | 0 | 10 | 361 | 76 | 427 | 0.0 | 718 |
MS.gene64859.t1 | MTR_5g023790 | 97.712 | 306 | 7 | 0 | 10 | 315 | 76 | 381 | 0.0 | 622 |
MS.gene64859.t1 | MTR_8g074000 | 74.148 | 352 | 88 | 1 | 10 | 361 | 83 | 431 | 0.0 | 539 |
MS.gene64859.t1 | MTR_5g023790 | 97.166 | 247 | 7 | 0 | 10 | 256 | 76 | 322 | 3.77e-178 | 498 |
MS.gene64859.t1 | MTR_5g088980 | 46.125 | 271 | 143 | 3 | 89 | 357 | 148 | 417 | 2.11e-78 | 247 |
MS.gene64859.t1 | MTR_7g089080 | 46.403 | 278 | 138 | 3 | 89 | 358 | 182 | 456 | 2.21e-77 | 259 |
MS.gene64859.t1 | MTR_1g011470 | 40.074 | 272 | 155 | 4 | 89 | 353 | 145 | 415 | 2.62e-60 | 200 |
MS.gene64859.t1 | MTR_3g107970 | 41.221 | 262 | 147 | 3 | 99 | 353 | 206 | 467 | 9.18e-58 | 195 |
MS.gene64859.t1 | MTR_3g088415 | 37.847 | 288 | 161 | 8 | 79 | 354 | 216 | 497 | 3.10e-57 | 194 |
MS.gene64859.t1 | MTR_2g102520 | 41.975 | 243 | 132 | 5 | 80 | 314 | 189 | 430 | 2.14e-53 | 183 |
MS.gene64859.t1 | MTR_3g088405 | 36.429 | 280 | 167 | 6 | 90 | 359 | 228 | 506 | 3.54e-52 | 181 |
MS.gene64859.t1 | MTR_2g102550 | 37.413 | 286 | 167 | 5 | 71 | 345 | 129 | 413 | 2.55e-51 | 177 |
MS.gene64859.t1 | MTR_3g088415 | 41.228 | 228 | 124 | 5 | 79 | 299 | 216 | 440 | 3.62e-51 | 176 |
MS.gene64859.t1 | MTR_1g018680 | 35.769 | 260 | 158 | 4 | 99 | 349 | 84 | 343 | 8.91e-47 | 163 |
MS.gene64859.t1 | MTR_3g102510 | 34.263 | 251 | 158 | 3 | 106 | 349 | 74 | 324 | 6.96e-44 | 155 |
MS.gene64859.t1 | MTR_3g060770 | 39.648 | 227 | 126 | 5 | 104 | 323 | 30 | 252 | 8.97e-43 | 150 |
MS.gene64859.t1 | MTR_3g102520 | 33.852 | 257 | 161 | 4 | 102 | 349 | 87 | 343 | 4.50e-42 | 150 |
MS.gene64859.t1 | MTR_3g102560 | 35.021 | 237 | 140 | 4 | 104 | 331 | 62 | 293 | 2.43e-40 | 145 |
MS.gene64859.t1 | MTR_3g088415 | 42.857 | 175 | 96 | 3 | 79 | 252 | 216 | 387 | 5.52e-40 | 145 |
MS.gene64859.t1 | MTR_3g102530 | 33.852 | 257 | 161 | 4 | 102 | 349 | 80 | 336 | 5.70e-40 | 145 |
MS.gene64859.t1 | MTR_3g061680 | 36.726 | 226 | 132 | 5 | 104 | 322 | 20 | 241 | 1.12e-37 | 137 |
MS.gene64859.t1 | MTR_3g060820 | 36.283 | 226 | 133 | 5 | 104 | 322 | 20 | 241 | 1.77e-36 | 133 |
MS.gene64859.t1 | MTR_3g102540 | 33.200 | 250 | 150 | 6 | 110 | 349 | 13 | 255 | 2.33e-35 | 130 |
MS.gene64859.t1 | MTR_3g060400 | 35.193 | 233 | 140 | 5 | 97 | 322 | 19 | 247 | 2.65e-35 | 130 |
MS.gene64859.t1 | MTR_3g460990 | 35.193 | 233 | 140 | 5 | 97 | 322 | 19 | 247 | 2.65e-35 | 130 |
MS.gene64859.t1 | MTR_3g060410 | 37.073 | 205 | 122 | 3 | 126 | 323 | 123 | 327 | 1.70e-34 | 130 |
MS.gene64859.t1 | MTR_6g045270 | 32.143 | 252 | 152 | 8 | 105 | 349 | 45 | 284 | 1.54e-27 | 110 |
MS.gene64859.t1 | MTR_5g011900 | 34.021 | 194 | 118 | 3 | 89 | 278 | 54 | 241 | 1.30e-25 | 103 |
MS.gene64859.t1 | MTR_1g032850 | 32.569 | 218 | 138 | 4 | 108 | 317 | 336 | 552 | 6.86e-18 | 85.5 |
MS.gene64859.t1 | MTR_5g044040 | 46.753 | 77 | 41 | 0 | 160 | 236 | 7 | 83 | 4.33e-17 | 77.0 |
MS.gene64859.t1 | MTR_2g005960 | 27.848 | 158 | 96 | 4 | 60 | 199 | 72 | 229 | 6.75e-13 | 68.2 |
MS.gene64859.t1 | MTR_3g103080 | 22.422 | 223 | 161 | 4 | 133 | 346 | 61 | 280 | 8.47e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64859.t1 | AT1G20610 | 60.227 | 352 | 136 | 3 | 10 | 358 | 79 | 429 | 1.34e-150 | 431 |
MS.gene64859.t1 | AT1G76310 | 60.955 | 356 | 126 | 4 | 10 | 358 | 81 | 430 | 3.78e-149 | 428 |
MS.gene64859.t1 | AT2G17620 | 63.050 | 341 | 121 | 3 | 19 | 358 | 87 | 423 | 9.63e-147 | 422 |
MS.gene64859.t1 | AT1G76310 | 56.510 | 384 | 126 | 5 | 10 | 358 | 81 | 458 | 1.92e-142 | 412 |
MS.gene64859.t1 | AT4G35620 | 62.874 | 334 | 114 | 4 | 35 | 360 | 96 | 427 | 2.13e-132 | 385 |
MS.gene64859.t1 | AT1G76310 | 59.425 | 313 | 114 | 4 | 10 | 315 | 81 | 387 | 6.90e-124 | 362 |
MS.gene64859.t1 | AT4G35620 | 63.542 | 288 | 96 | 3 | 35 | 315 | 96 | 381 | 3.97e-113 | 334 |
MS.gene64859.t1 | AT1G76310 | 58.268 | 254 | 93 | 4 | 10 | 256 | 81 | 328 | 7.45e-92 | 279 |
MS.gene64859.t1 | AT1G20590 | 70.175 | 171 | 51 | 0 | 166 | 336 | 65 | 235 | 7.27e-87 | 263 |
MS.gene64859.t1 | AT3G11520 | 40.282 | 355 | 196 | 6 | 14 | 360 | 66 | 412 | 5.22e-83 | 258 |
MS.gene64859.t1 | AT5G06150 | 44.043 | 277 | 151 | 3 | 84 | 358 | 159 | 433 | 4.69e-82 | 257 |
MS.gene64859.t1 | AT2G26760 | 45.318 | 267 | 143 | 3 | 85 | 349 | 109 | 374 | 1.99e-78 | 246 |
MS.gene64859.t1 | AT1G16330 | 44.128 | 281 | 155 | 1 | 73 | 353 | 364 | 642 | 2.99e-78 | 253 |
MS.gene64859.t1 | AT4G37490 | 44.366 | 284 | 151 | 4 | 81 | 358 | 140 | 422 | 1.34e-75 | 240 |
MS.gene64859.t1 | AT3G11520 | 40.968 | 310 | 167 | 6 | 14 | 315 | 66 | 367 | 3.59e-72 | 229 |
MS.gene64859.t1 | AT1G77390 | 39.405 | 269 | 155 | 4 | 89 | 350 | 162 | 429 | 2.55e-60 | 201 |
MS.gene64859.t1 | AT5G11300 | 42.379 | 269 | 147 | 4 | 89 | 350 | 156 | 423 | 4.19e-57 | 192 |
MS.gene64859.t1 | AT5G25380 | 39.925 | 268 | 153 | 4 | 89 | 349 | 157 | 423 | 4.61e-57 | 192 |
MS.gene64859.t1 | AT5G25380 | 39.925 | 268 | 153 | 4 | 89 | 349 | 157 | 423 | 4.61e-57 | 192 |
MS.gene64859.t1 | AT5G25380 | 39.925 | 268 | 153 | 4 | 89 | 349 | 163 | 429 | 8.69e-57 | 191 |
MS.gene64859.t1 | AT5G43080 | 37.548 | 261 | 160 | 3 | 91 | 349 | 73 | 332 | 3.28e-56 | 187 |
MS.gene64859.t1 | AT5G25380 | 39.924 | 263 | 150 | 4 | 89 | 344 | 157 | 418 | 6.82e-56 | 188 |
MS.gene64859.t1 | AT1G44110 | 37.050 | 278 | 167 | 4 | 80 | 350 | 169 | 445 | 1.45e-55 | 189 |
MS.gene64859.t1 | AT1G47210 | 39.552 | 268 | 152 | 5 | 91 | 349 | 88 | 354 | 1.08e-54 | 184 |
MS.gene64859.t1 | AT5G43080 | 36.842 | 266 | 160 | 4 | 91 | 349 | 73 | 337 | 5.67e-54 | 182 |
MS.gene64859.t1 | AT1G15570 | 39.700 | 267 | 153 | 4 | 90 | 349 | 173 | 438 | 1.19e-53 | 183 |
MS.gene64859.t1 | AT1G80370 | 39.700 | 267 | 153 | 4 | 90 | 349 | 182 | 447 | 1.41e-53 | 183 |
MS.gene64859.t1 | AT1G47220 | 39.925 | 268 | 151 | 5 | 91 | 349 | 42 | 308 | 5.23e-53 | 178 |
MS.gene64859.t1 | AT5G11300 | 45.946 | 222 | 112 | 4 | 89 | 303 | 156 | 376 | 1.79e-52 | 179 |
MS.gene64859.t1 | AT5G06150 | 47.802 | 182 | 89 | 4 | 84 | 263 | 159 | 336 | 7.31e-52 | 176 |
MS.gene64859.t1 | AT1G47230 | 36.154 | 260 | 157 | 4 | 99 | 349 | 88 | 347 | 7.73e-49 | 169 |
MS.gene64859.t1 | AT1G47230 | 36.015 | 261 | 157 | 5 | 99 | 349 | 88 | 348 | 4.25e-47 | 164 |
MS.gene64859.t1 | AT1G34460 | 36.649 | 191 | 98 | 3 | 64 | 253 | 227 | 395 | 7.11e-35 | 134 |
MS.gene64859.t1 | AT1G34460 | 36.649 | 191 | 98 | 3 | 64 | 253 | 227 | 395 | 7.11e-35 | 134 |
MS.gene64859.t1 | AT1G34460 | 38.144 | 194 | 94 | 6 | 64 | 253 | 213 | 384 | 1.16e-34 | 133 |
MS.gene64859.t1 | AT1G34460 | 38.144 | 194 | 94 | 6 | 64 | 253 | 227 | 398 | 1.29e-34 | 133 |
MS.gene64859.t1 | AT1G34460 | 38.144 | 194 | 94 | 6 | 64 | 253 | 227 | 398 | 1.29e-34 | 133 |
MS.gene64859.t1 | AT1G34460 | 38.144 | 194 | 94 | 6 | 64 | 253 | 227 | 398 | 1.29e-34 | 133 |
MS.gene64859.t1 | AT1G34460 | 38.144 | 194 | 94 | 6 | 64 | 253 | 227 | 398 | 1.29e-34 | 133 |
MS.gene64859.t1 | AT1G34460 | 38.144 | 194 | 94 | 6 | 64 | 253 | 227 | 398 | 1.71e-34 | 132 |
MS.gene64859.t1 | AT1G34460 | 38.144 | 194 | 94 | 6 | 64 | 253 | 227 | 398 | 1.89e-34 | 132 |
MS.gene64859.t1 | AT1G47210 | 44.762 | 105 | 54 | 3 | 91 | 192 | 88 | 191 | 3.11e-21 | 90.5 |
MS.gene64859.t1 | AT1G14750 | 33.696 | 184 | 119 | 2 | 137 | 317 | 385 | 568 | 4.36e-21 | 95.1 |
MS.gene64859.t1 | AT1G14750 | 33.696 | 184 | 119 | 2 | 137 | 317 | 385 | 568 | 5.20e-21 | 94.7 |
MS.gene64859.t1 | AT1G14750 | 33.696 | 184 | 119 | 2 | 137 | 317 | 217 | 400 | 5.69e-21 | 94.0 |
MS.gene64859.t1 | AT1G14750 | 33.696 | 184 | 118 | 3 | 137 | 317 | 217 | 399 | 8.08e-20 | 90.5 |
Find 64 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGAGAATGCTCTAGTTTAA+TGG | 0.170801 | 5.3:-13697725 | MS.gene64859:CDS |
CCATTTCCAGAACTTCTTTC+CGG | 0.210345 | 5.3:+13698793 | None:intergenic |
TTTCATGAGAAGGTTCTTAA+AGG | 0.288446 | 5.3:-13698512 | MS.gene64859:CDS |
AAATCAAGTTCAAATGGATT+TGG | 0.319295 | 5.3:-13700056 | MS.gene64859:CDS |
TGGTCTAGTGGCAATGCTTT+TGG | 0.334805 | 5.3:-13698886 | MS.gene64859:CDS |
CTGTGTTTCACCAAACTATA+TGG | 0.349277 | 5.3:-13699265 | MS.gene64859:CDS |
CATTTCCAGAACTTCTTTCC+GGG | 0.354928 | 5.3:+13698794 | None:intergenic |
GCTGGGACAGGGAAACTTAC+AGG | 0.367597 | 5.3:-13697685 | MS.gene64859:CDS |
TGAAAGGATGAGAGCTATAC+TGG | 0.375881 | 5.3:-13699223 | MS.gene64859:CDS |
TTCTCCAGAAGAAAACTTGC+TGG | 0.385990 | 5.3:+13697610 | None:intergenic |
AGTTGAGATGGAGGATATCA+TGG | 0.409043 | 5.3:-13699824 | MS.gene64859:CDS |
TTGGCAAAATCAAGTTCAAA+TGG | 0.410685 | 5.3:-13700062 | MS.gene64859:CDS |
TGCTCTAAAGCCATTGGCAC+TGG | 0.419967 | 5.3:+13699987 | None:intergenic |
ACAAGAGGGTCATTTGCATC+AGG | 0.433063 | 5.3:+13699775 | None:intergenic |
GGGGTGTCAATGTCCATAAC+AGG | 0.441867 | 5.3:+13699796 | None:intergenic |
TCTGTTTGCTCTAAAGCCAT+TGG | 0.446717 | 5.3:+13699981 | None:intergenic |
TGAGAAGAAACAAGCGGATC+CGG | 0.456269 | 5.3:-13700678 | MS.gene64859:intron |
CTTATAGGAGGAAGTTGAGA+TGG | 0.464867 | 5.3:-13699836 | MS.gene64859:intron |
AATTGCTGTGCCATATAGTT+TGG | 0.468094 | 5.3:+13699255 | None:intergenic |
TATCATGGAAGAGCCTGTTA+TGG | 0.468278 | 5.3:-13699809 | MS.gene64859:CDS |
GGCACTGGCTGATCCTCCAC+TGG | 0.480548 | 5.3:+13700002 | None:intergenic |
GAGTTGATCTTCAGAGTAGT+TGG | 0.480770 | 5.3:+13698197 | None:intergenic |
GTTGACTTTCACAAGAAGGC+TGG | 0.486106 | 5.3:-13697703 | MS.gene64859:CDS |
TTTCACAAGAAGGCTGGGAC+AGG | 0.486235 | 5.3:-13697697 | MS.gene64859:CDS |
ACAGCTCAATGCACTATGTA+TGG | 0.490108 | 5.3:-13698255 | MS.gene64859:CDS |
CCGGAAAGAAGTTCTGGAAA+TGG | 0.494858 | 5.3:-13698793 | MS.gene64859:intron |
ATACACCCGGAAAGAAGTTC+TGG | 0.504153 | 5.3:-13698799 | MS.gene64859:CDS |
CGATCTGATTCGCTATGCAT+TGG | 0.506937 | 5.3:+13699957 | None:intergenic |
ACTGGTTGACTGGCTTATTG+AGG | 0.508362 | 5.3:-13699205 | MS.gene64859:intron |
GCTTCAGTTGGTTGGTCTAG+TGG | 0.512653 | 5.3:-13698898 | MS.gene64859:CDS |
AACTACCAAAAGGTCAAACT+TGG | 0.515338 | 5.3:-13700081 | MS.gene64859:CDS |
AATGGTTGACTTTCACAAGA+AGG | 0.528684 | 5.3:-13697707 | MS.gene64859:CDS |
AGAAAGAAGCTTCAGTTGGT+TGG | 0.531223 | 5.3:-13698906 | MS.gene64859:CDS |
GCAGCGGCAGCTAGTTGAGA+AGG | 0.533466 | 5.3:+13698285 | None:intergenic |
ATAGGAGGAAGTTGAGATGG+AGG | 0.543444 | 5.3:-13699833 | MS.gene64859:intron |
GAACCTTCTCATGAAAACAT+AGG | 0.546868 | 5.3:+13698519 | None:intergenic |
GGAGGATCAGCCAGTGCCAA+TGG | 0.555755 | 5.3:-13699997 | MS.gene64859:CDS |
CTCATGAAAACATAGGCTGT+TGG | 0.556150 | 5.3:+13698526 | None:intergenic |
CTCTTACTACAGAAAAGTTG+AGG | 0.560855 | 5.3:-13699725 | MS.gene64859:intron |
TGAGAGCTATACTGGTTGAC+TGG | 0.562836 | 5.3:-13699215 | MS.gene64859:CDS |
AGCAATTTGACATTAATGAA+AGG | 0.565905 | 5.3:-13699239 | MS.gene64859:CDS |
TTGAATAGGGAACTACCAAA+AGG | 0.566910 | 5.3:-13700091 | MS.gene64859:intron |
TTGACTTTCACAAGAAGGCT+GGG | 0.569949 | 5.3:-13697702 | MS.gene64859:CDS |
GAAGTTTCAGTGCCTGTGGT+TGG | 0.581724 | 5.3:-13698849 | MS.gene64859:CDS |
CAAGAGGGTCATTTGCATCA+GGG | 0.582184 | 5.3:+13699776 | None:intergenic |
GGTAAGAAAGAAGCTTCAGT+TGG | 0.588907 | 5.3:-13698910 | MS.gene64859:CDS |
CATGAGAAGGTTCTTAAAGG+CGG | 0.594323 | 5.3:-13698509 | MS.gene64859:CDS |
AAGAGGGTCATTTGCATCAG+GGG | 0.600129 | 5.3:+13699777 | None:intergenic |
GCATAGCGAATCAGATCGGA+TGG | 0.604904 | 5.3:-13699952 | MS.gene64859:intron |
AGAATTAGATCTCCAACCAC+AGG | 0.618555 | 5.3:+13698837 | None:intergenic |
ATATATTCAGCAACTACAAG+AGG | 0.618620 | 5.3:+13699760 | None:intergenic |
CAATGCATAGCGAATCAGAT+CGG | 0.621608 | 5.3:-13699956 | MS.gene64859:CDS |
TATCAGACAGAGCATACACC+CGG | 0.634548 | 5.3:-13698812 | MS.gene64859:CDS |
AGTGGAGTAAGACATGTGAA+TGG | 0.637958 | 5.3:-13698224 | MS.gene64859:CDS |
TTCACAAGAAGGCTGGGACA+GGG | 0.640634 | 5.3:-13697696 | MS.gene64859:CDS |
TGAGGAAGTTTCAGTGCCTG+TGG | 0.654299 | 5.3:-13698853 | MS.gene64859:CDS |
TATATTCAGCAACTACAAGA+GGG | 0.660089 | 5.3:+13699761 | None:intergenic |
GGAAACTTACAGGAGCACAT+AGG | 0.667527 | 5.3:-13697675 | MS.gene64859:CDS |
TGATGAACACAAGCCAGTGG+AGG | 0.670864 | 5.3:-13700015 | MS.gene64859:CDS |
GAAACAATGTCTCATGCATG+AGG | 0.677202 | 5.3:+13698976 | None:intergenic |
CTATGTATGGTGTCAAACAG+TGG | 0.683237 | 5.3:-13698242 | MS.gene64859:CDS |
TTGAGCTGTATAGACAGCAG+CGG | 0.686693 | 5.3:+13698269 | None:intergenic |
TGATGATGAACACAAGCCAG+TGG | 0.720589 | 5.3:-13700018 | MS.gene64859:CDS |
TGTTTGTGAGAAGAAACAAG+CGG | 0.747744 | 5.3:-13700684 | MS.gene64859:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACAATAATTGAATTTAA+TGG | - | chr5.3:13698718-13698737 | MS.gene64859:intron | 10.0% |
!! | AGTTATGATAAAAAAAAAAA+TGG | + | chr5.3:13699855-13699874 | None:intergenic | 10.0% |
!!! | ATTAGTTATTGAAATTTTAT+TGG | + | chr5.3:13698974-13698993 | None:intergenic | 10.0% |
!! | ACTATATAAAAAAAAGGTTA+TGG | + | chr5.3:13700480-13700499 | None:intergenic | 15.0% |
!!! | AATATCTTTGTTTTTTCTTA+TGG | + | chr5.3:13697728-13697747 | None:intergenic | 15.0% |
!!! | GTTTTTTCTCAAATTATTAT+AGG | + | chr5.3:13698703-13698722 | None:intergenic | 15.0% |
!! | AAGTGATCATTATCAATATT+TGG | + | chr5.3:13699250-13699269 | None:intergenic | 20.0% |
!! | AGAAATTCAAATTACACTAA+AGG | + | chr5.3:13697694-13697713 | None:intergenic | 20.0% |
!! | AGTGATCATTATCAATATTT+GGG | + | chr5.3:13699249-13699268 | None:intergenic | 20.0% |
!! | ATATAACAAAATGACATCAT+AGG | - | chr5.3:13700409-13700428 | MS.gene64859:intron | 20.0% |
!! | ATTAATCCTATATTTAATCC+AGG | + | chr5.3:13699162-13699181 | None:intergenic | 20.0% |
!! | GAAATTCAAATTACACTAAA+GGG | + | chr5.3:13697693-13697712 | None:intergenic | 20.0% |
!! | GAGAGAATTTCAATATTAAT+TGG | + | chr5.3:13698952-13698971 | None:intergenic | 20.0% |
!! | GTATTTGTAATTAGTAACTA+TGG | + | chr5.3:13699885-13699904 | None:intergenic | 20.0% |
!! | TATAACAAAATGACATCATA+GGG | - | chr5.3:13700410-13700429 | MS.gene64859:intron | 20.0% |
!! | TCTTGATTTACTGTTATATT+AGG | - | chr5.3:13698041-13698060 | MS.gene64859:intron | 20.0% |
!! | TGATAAAAAAAAAAATGGCA+TGG | + | chr5.3:13699850-13699869 | None:intergenic | 20.0% |
!! | TTTAGTGTAATTTGAATTTC+TGG | - | chr5.3:13697693-13697712 | MS.gene64859:CDS | 20.0% |
!!! | GAATTAATGATTTAAGTTTC+TGG | - | chr5.3:13697654-13697673 | MS.gene64859:CDS | 20.0% |
! | AAATGGCATGGAAATATATT+AGG | + | chr5.3:13699838-13699857 | None:intergenic | 25.0% |
! | AATGTAGCAAAATTTCACAA+AGG | + | chr5.3:13698127-13698146 | None:intergenic | 25.0% |
! | AGCAATTTGACATTAATGAA+AGG | - | chr5.3:13699046-13699065 | MS.gene64859:intron | 25.0% |
! | ATAAAAGTGATATACTCCTA+TGG | + | chr5.3:13698902-13698921 | None:intergenic | 25.0% |
! | CAAACCTTAATCTTATATTG+CGG | - | chr5.3:13699628-13699647 | MS.gene64859:intron | 25.0% |
! | CATTCAAAATCTTAGTCAAA+AGG | + | chr5.3:13698163-13698182 | None:intergenic | 25.0% |
! | GCAATATAAGATTAAGGTTT+GGG | + | chr5.3:13699629-13699648 | None:intergenic | 25.0% |
! | GTGATCATTATCAATATTTG+GGG | + | chr5.3:13699248-13699267 | None:intergenic | 25.0% |
! | TCTAATTAGTGAGAGAATTT+AGG | + | chr5.3:13698879-13698898 | None:intergenic | 25.0% |
! | TGATCATTATCAATATTTGG+GGG | + | chr5.3:13699247-13699266 | None:intergenic | 25.0% |
! | TGATTTACTGTTATATTAGG+AGG | - | chr5.3:13698044-13698063 | MS.gene64859:intron | 25.0% |
! | TTGAGATAAGTGTTTGAATT+TGG | - | chr5.3:13697746-13697765 | MS.gene64859:intron | 25.0% |
!! | AAATCAAGTTCAAATGGATT+TGG | - | chr5.3:13698229-13698248 | MS.gene64859:CDS | 25.0% |
!! | ATTTGTGTGTAAAATTTTGC+AGG | - | chr5.3:13699695-13699714 | MS.gene64859:intron | 25.0% |
!! | CAACAACTAAACTTTGAAAA+AGG | + | chr5.3:13698412-13698431 | None:intergenic | 25.0% |
!! | CAATCTTATAGACAGATTTT+TGG | - | chr5.3:13699339-13699358 | MS.gene64859:intron | 25.0% |
!! | TGACTAAGATTTTGAATGTT+GGG | - | chr5.3:13698165-13698184 | MS.gene64859:intron | 25.0% |
!! | TGTAATTTGAATTTCTGGAT+TGG | - | chr5.3:13697698-13697717 | MS.gene64859:CDS | 25.0% |
!! | TTGACTAAGATTTTGAATGT+TGG | - | chr5.3:13698164-13698183 | MS.gene64859:intron | 25.0% |
!!! | AATGATTTAAGTTTCTGGTT+TGG | - | chr5.3:13697659-13697678 | MS.gene64859:CDS | 25.0% |
!!! | ATGCTACATAGTTTTTGATT+TGG | + | chr5.3:13697784-13697803 | None:intergenic | 25.0% |
!!! | CAAGTCAATAGCATTTTTTA+AGG | + | chr5.3:13699136-13699155 | None:intergenic | 25.0% |
!!! | TGTCAAATAATTGGTCTTAT+AGG | - | chr5.3:13698434-13698453 | MS.gene64859:intron | 25.0% |
AAATGCTTCCATTGACATTA+GGG | + | chr5.3:13698801-13698820 | None:intergenic | 30.0% | |
AGAACACTTATCTGATCATT+TGG | - | chr5.3:13698604-13698623 | MS.gene64859:intron | 30.0% | |
ATATATTCAGCAACTACAAG+AGG | + | chr5.3:13698528-13698547 | None:intergenic | 30.0% | |
CGCAATATAAGATTAAGGTT+TGG | + | chr5.3:13699630-13699649 | None:intergenic | 30.0% | |
TAAATGCTTCCATTGACATT+AGG | + | chr5.3:13698802-13698821 | None:intergenic | 30.0% | |
TATATTCAGCAACTACAAGA+GGG | + | chr5.3:13698527-13698546 | None:intergenic | 30.0% | |
TTATCAATATTTGGGGGAAA+TGG | + | chr5.3:13699241-13699260 | None:intergenic | 30.0% | |
TTGCATCCTGGATTAAATAT+AGG | - | chr5.3:13699153-13699172 | MS.gene64859:intron | 30.0% | |
TTGGCAAAATCAAGTTCAAA+TGG | - | chr5.3:13698223-13698242 | MS.gene64859:CDS | 30.0% | |
TTTCATGAGAAGGTTCTTAA+AGG | - | chr5.3:13699773-13699792 | MS.gene64859:CDS | 30.0% | |
! | AAGTGTTGCTAAAATGATGA+TGG | - | chr5.3:13698013-13698032 | MS.gene64859:intron | 30.0% |
! | GACTAAGATTTTGAATGTTG+GGG | - | chr5.3:13698166-13698185 | MS.gene64859:intron | 30.0% |
! | GCATTGACAATTCAGATTAT+TGG | - | chr5.3:13697800-13697819 | MS.gene64859:intron | 30.0% |
! | GTTGTTGACTGTCAAATAAT+TGG | - | chr5.3:13698425-13698444 | MS.gene64859:intron | 30.0% |
! | TTTAACCACATCTGATAATG+TGG | + | chr5.3:13697855-13697874 | None:intergenic | 30.0% |
!! | CAAATAATTGGTCTTATAGG+AGG | - | chr5.3:13698437-13698456 | MS.gene64859:intron | 30.0% |
!! | TAAGATGACTGCAGTTTTAA+AGG | + | chr5.3:13699550-13699569 | None:intergenic | 30.0% |
!! | TCGTCGGAATTTTTAGAAAA+AGG | + | chr5.3:13699663-13699682 | None:intergenic | 30.0% |
AAAACTATGCGCAATTGTGT+TGG | - | chr5.3:13700181-13700200 | MS.gene64859:intron | 35.0% | |
AAATCTCAGTTACTTGTCGT+CGG | + | chr5.3:13699679-13699698 | None:intergenic | 35.0% | |
AACTACCAAAAGGTCAAACT+TGG | - | chr5.3:13698204-13698223 | MS.gene64859:CDS | 35.0% | |
AATTGCTGTGCCATATAGTT+TGG | + | chr5.3:13699033-13699052 | None:intergenic | 35.0% | |
AATTTGTCATGCACCTGAAA+AGG | + | chr5.3:13699286-13699305 | None:intergenic | 35.0% | |
ATGTTGGGGTCAATTTGAAT+AGG | - | chr5.3:13698180-13698199 | MS.gene64859:intron | 35.0% | |
ATTAATTCCTCACCTAGTGA+TGG | + | chr5.3:13697642-13697661 | None:intergenic | 35.0% | |
ATTTGTCATGCACCTGAAAA+GGG | + | chr5.3:13699285-13699304 | None:intergenic | 35.0% | |
CACAAAAACAACTAATGCTG+AGG | - | chr5.3:13698087-13698106 | MS.gene64859:intron | 35.0% | |
CAGAAAAGTTGAGGTACATT+TGG | - | chr5.3:13698569-13698588 | MS.gene64859:CDS | 35.0% | |
CTCTTACTACAGAAAAGTTG+AGG | - | chr5.3:13698560-13698579 | MS.gene64859:CDS | 35.0% | |
CTGTGTTTCACCAAACTATA+TGG | - | chr5.3:13699020-13699039 | MS.gene64859:intron | 35.0% | |
CTTAATCTTATATTGCGGCA+GGG | - | chr5.3:13699633-13699652 | MS.gene64859:intron | 35.0% | |
GAACCTTCTCATGAAAACAT+AGG | + | chr5.3:13699769-13699788 | None:intergenic | 35.0% | |
GAATAAGCCTTCGATTTAGT+TGG | + | chr5.3:13700149-13700168 | None:intergenic | 35.0% | |
GAGATCAAAAGACTATGCAT+CGG | - | chr5.3:13700333-13700352 | MS.gene64859:intron | 35.0% | |
GGTGACATTGAAAATCTTTG+TGG | - | chr5.3:13699580-13699599 | MS.gene64859:intron | 35.0% | |
GTATCTACATCTACATGTCA+CGG | - | chr5.3:13697913-13697932 | MS.gene64859:intron | 35.0% | |
GTGACATGTAGATGTAGATA+CGG | + | chr5.3:13697914-13697933 | None:intergenic | 35.0% | |
TCTCTCACTAATTAGACCAT+AGG | - | chr5.3:13698883-13698902 | MS.gene64859:CDS | 35.0% | |
TGTTGGGGTCAATTTGAATA+GGG | - | chr5.3:13698181-13698200 | MS.gene64859:intron | 35.0% | |
TGTTTGTGAGAAGAAACAAG+CGG | - | chr5.3:13697601-13697620 | MS.gene64859:CDS | 35.0% | |
TTAAGGCATAGTGATTCAGA+AGG | + | chr5.3:13699119-13699138 | None:intergenic | 35.0% | |
TTAATTCCTCACCTAGTGAT+GGG | + | chr5.3:13697641-13697660 | None:intergenic | 35.0% | |
TTGAATAGGGAACTACCAAA+AGG | - | chr5.3:13698194-13698213 | MS.gene64859:intron | 35.0% | |
! | AATGGTTGACTTTCACAAGA+AGG | - | chr5.3:13700578-13700597 | MS.gene64859:intron | 35.0% |
! | CAGAGAATGCTCTAGTTTAA+TGG | - | chr5.3:13700560-13700579 | MS.gene64859:intron | 35.0% |
! | CAGTCATCTTACATTTTCTG+CGG | - | chr5.3:13699559-13699578 | MS.gene64859:intron | 35.0% |
! | GTGTAAAATTTTGCAGGAGA+AGG | - | chr5.3:13699701-13699720 | MS.gene64859:intron | 35.0% |
! | TCTAGTTCCAACTAAATCGA+AGG | - | chr5.3:13700139-13700158 | MS.gene64859:intron | 35.0% |
! | TTTTGCCAAGTTTGACCTTT+TGG | + | chr5.3:13698212-13698231 | None:intergenic | 35.0% |
!! | ATTTTTGGAAAAGCAGTCTG+TGG | - | chr5.3:13699354-13699373 | MS.gene64859:intron | 35.0% |
!! | TCATTTTAGCAACACTTGCA+TGG | + | chr5.3:13698010-13698029 | None:intergenic | 35.0% |
ACAGCTCAATGCACTATGTA+TGG | - | chr5.3:13700030-13700049 | MS.gene64859:CDS | 40.0% | |
AGAAAGAAGCTTCAGTTGGT+TGG | - | chr5.3:13699379-13699398 | MS.gene64859:intron | 40.0% | |
AGAATTAGATCTCCAACCAC+AGG | + | chr5.3:13699451-13699470 | None:intergenic | 40.0% | |
AGTGGAGTAAGACATGTGAA+TGG | - | chr5.3:13700061-13700080 | MS.gene64859:CDS | 40.0% | |
AGTTGAGATGGAGGATATCA+TGG | - | chr5.3:13698461-13698480 | MS.gene64859:intron | 40.0% | |
CAATGCATAGCGAATCAGAT+CGG | - | chr5.3:13698329-13698348 | MS.gene64859:CDS | 40.0% | |
CATGAGAAGGTTCTTAAAGG+CGG | - | chr5.3:13699776-13699795 | MS.gene64859:CDS | 40.0% | |
CATTTCCAGAACTTCTTTCC+GGG | + | chr5.3:13699494-13699513 | None:intergenic | 40.0% | |
CCATTTCCAGAACTTCTTTC+CGG | + | chr5.3:13699495-13699514 | None:intergenic | 40.0% | |
CCTGCCGCAATATAAGATTA+AGG | + | chr5.3:13699635-13699654 | None:intergenic | 40.0% | |
CCTTAATCTTATATTGCGGC+AGG | - | chr5.3:13699632-13699651 | MS.gene64859:intron | 40.0% | |
CTCATGAAAACATAGGCTGT+TGG | + | chr5.3:13699762-13699781 | None:intergenic | 40.0% | |
CTTATAGGAGGAAGTTGAGA+TGG | - | chr5.3:13698449-13698468 | MS.gene64859:intron | 40.0% | |
GAAACAATGTCTCATGCATG+AGG | + | chr5.3:13699312-13699331 | None:intergenic | 40.0% | |
GGTAAGAAAGAAGCTTCAGT+TGG | - | chr5.3:13699375-13699394 | MS.gene64859:intron | 40.0% | |
TATCATGGAAGAGCCTGTTA+TGG | - | chr5.3:13698476-13698495 | MS.gene64859:intron | 40.0% | |
TGAAAGGATGAGAGCTATAC+TGG | - | chr5.3:13699062-13699081 | MS.gene64859:intron | 40.0% | |
TTCTCCAGAAGAAAACTTGC+TGG | + | chr5.3:13700678-13700697 | None:intergenic | 40.0% | |
TTGACTTTCACAAGAAGGCT+GGG | - | chr5.3:13700583-13700602 | MS.gene64859:intron | 40.0% | |
! | AATTTTGCAGGAGAAGGTGA+TGG | - | chr5.3:13699707-13699726 | MS.gene64859:intron | 40.0% |
! | CAGCCTATGTTTTCATGAGA+AGG | - | chr5.3:13699763-13699782 | MS.gene64859:CDS | 40.0% |
! | CTATGTATGGTGTCAAACAG+TGG | - | chr5.3:13700043-13700062 | MS.gene64859:CDS | 40.0% |
! | GAGTTGATCTTCAGAGTAGT+TGG | + | chr5.3:13700091-13700110 | None:intergenic | 40.0% |
! | GTTTTGCATGAACCCTTTTC+AGG | - | chr5.3:13699270-13699289 | MS.gene64859:CDS | 40.0% |
! | TGAACCAGCAAGTTTTCTTC+TGG | - | chr5.3:13700671-13700690 | MS.gene64859:intron | 40.0% |
!! | AATGCTATTGACTTGCATCC+TGG | - | chr5.3:13699141-13699160 | MS.gene64859:intron | 40.0% |
!! | TCTGTTTGCTCTAAAGCCAT+TGG | + | chr5.3:13698307-13698326 | None:intergenic | 40.0% |
AAGAGGGTCATTTGCATCAG+GGG | + | chr5.3:13698511-13698530 | None:intergenic | 45.0% | |
ACAAGAGGGTCATTTGCATC+AGG | + | chr5.3:13698513-13698532 | None:intergenic | 45.0% | |
ATACACCCGGAAAGAAGTTC+TGG | - | chr5.3:13699486-13699505 | MS.gene64859:intron | 45.0% | |
ATAGGAGGAAGTTGAGATGG+AGG | - | chr5.3:13698452-13698471 | MS.gene64859:intron | 45.0% | |
CAAGAGGGTCATTTGCATCA+GGG | + | chr5.3:13698512-13698531 | None:intergenic | 45.0% | |
CTATGTGTCAGTGTGGTGTA+TGG | + | chr5.3:13698677-13698696 | None:intergenic | 45.0% | |
TAGGTGTCTATGTGTCAGTG+TGG | + | chr5.3:13698684-13698703 | None:intergenic | 45.0% | |
TATCAGACAGAGCATACACC+CGG | - | chr5.3:13699473-13699492 | MS.gene64859:intron | 45.0% | |
TGAGAAGAAACAAGCGGATC+CGG | - | chr5.3:13697607-13697626 | MS.gene64859:CDS | 45.0% | |
TGGTTGAGCCCTAATGTCAA+TGG | - | chr5.3:13698790-13698809 | MS.gene64859:intron | 45.0% | |
TTGAGCTGTATAGACAGCAG+CGG | + | chr5.3:13700019-13700038 | None:intergenic | 45.0% | |
! | CACATCTGATAATGTGGCGT+CGG | + | chr5.3:13697849-13697868 | None:intergenic | 45.0% |
! | CGATCTGATTCGCTATGCAT+TGG | + | chr5.3:13698331-13698350 | None:intergenic | 45.0% |
! | GCTTTTGGCATGCAAGTATG+AGG | - | chr5.3:13699414-13699433 | MS.gene64859:intron | 45.0% |
! | GGAAACTTACAGGAGCACAT+AGG | - | chr5.3:13700610-13700629 | MS.gene64859:intron | 45.0% |
! | GTTGACTTTCACAAGAAGGC+TGG | - | chr5.3:13700582-13700601 | MS.gene64859:intron | 45.0% |
! | TAGCAGCTCAAGCTGTTTCA+TGG | + | chr5.3:13699926-13699945 | None:intergenic | 45.0% |
! | TGAGAGCTATACTGGTTGAC+TGG | - | chr5.3:13699070-13699089 | MS.gene64859:intron | 45.0% |
! | TGATGATGAACACAAGCCAG+TGG | - | chr5.3:13698267-13698286 | MS.gene64859:CDS | 45.0% |
! | TGGTCTAGTGGCAATGCTTT+TGG | - | chr5.3:13699399-13699418 | MS.gene64859:intron | 45.0% |
!! | ACTGGTTGACTGGCTTATTG+AGG | - | chr5.3:13699080-13699099 | MS.gene64859:intron | 45.0% |
!! | CCGGAAAGAAGTTCTGGAAA+TGG | - | chr5.3:13699492-13699511 | MS.gene64859:intron | 45.0% |
!! | ATAATAACTATATAAAAAAA+AGG | + | chr5.3:13700486-13700505 | None:intergenic | 5.0% |
ACATTAGGGCTCAACCAGAG+TGG | + | chr5.3:13698787-13698806 | None:intergenic | 50.0% | |
CGACGCCACATTATCAGATG+TGG | - | chr5.3:13697847-13697866 | MS.gene64859:intron | 50.0% | |
GAAGTTTCAGTGCCTGTGGT+TGG | - | chr5.3:13699436-13699455 | MS.gene64859:intron | 50.0% | |
GCATAGCGAATCAGATCGGA+TGG | - | chr5.3:13698333-13698352 | MS.gene64859:CDS | 50.0% | |
TGAGGAAGTTTCAGTGCCTG+TGG | - | chr5.3:13699432-13699451 | MS.gene64859:intron | 50.0% | |
TGATGAACACAAGCCAGTGG+AGG | - | chr5.3:13698270-13698289 | MS.gene64859:CDS | 50.0% | |
TTCACAAGAAGGCTGGGACA+GGG | - | chr5.3:13700589-13700608 | MS.gene64859:intron | 50.0% | |
TTTCACAAGAAGGCTGGGAC+AGG | - | chr5.3:13700588-13700607 | MS.gene64859:intron | 50.0% | |
! | GGGGTGTCAATGTCCATAAC+AGG | + | chr5.3:13698492-13698511 | None:intergenic | 50.0% |
!! | CTAGTGATGGGTCGATGAAC+CGG | + | chr5.3:13697629-13697648 | None:intergenic | 50.0% |
!! | GCTTCAGTTGGTTGGTCTAG+TGG | - | chr5.3:13699387-13699406 | MS.gene64859:intron | 50.0% |
!! | TGCTCTAAAGCCATTGGCAC+TGG | + | chr5.3:13698301-13698320 | None:intergenic | 50.0% |
ACACCTGTCCACATCCACTC+TGG | - | chr5.3:13698770-13698789 | MS.gene64859:intron | 55.0% | |
CAACCAGAGTGGATGTGGAC+AGG | + | chr5.3:13698776-13698795 | None:intergenic | 55.0% | |
CACGGTGTCTCTGTCATGTC+AGG | - | chr5.3:13697931-13697950 | MS.gene64859:intron | 55.0% | |
CATCGACCCATCACTAGGTG+AGG | - | chr5.3:13697632-13697651 | MS.gene64859:CDS | 55.0% | |
CGGTTCATCGACCCATCACT+AGG | - | chr5.3:13697627-13697646 | MS.gene64859:CDS | 55.0% | |
GCTGGGACAGGGAAACTTAC+AGG | - | chr5.3:13700600-13700619 | MS.gene64859:intron | 55.0% | |
GCAGCGGCAGCTAGTTGAGA+AGG | + | chr5.3:13700003-13700022 | None:intergenic | 60.0% | |
GGAGGATCAGCCAGTGCCAA+TGG | - | chr5.3:13698288-13698307 | MS.gene64859:CDS | 60.0% | |
GGGCTCAACCAGAGTGGATG+TGG | + | chr5.3:13698781-13698800 | None:intergenic | 60.0% | |
!! | GGCACTGGCTGATCCTCCAC+TGG | + | chr5.3:13698286-13698305 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 13697600 | 13700707 | 13697600 | ID=MS.gene64859 |
chr5.3 | mRNA | 13697600 | 13700707 | 13697600 | ID=MS.gene64859.t1;Parent=MS.gene64859 |
chr5.3 | exon | 13700679 | 13700707 | 13700679 | ID=MS.gene64859.t1.exon1;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13700679 | 13700707 | 13700679 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13700199 | 13700244 | 13700199 | ID=MS.gene64859.t1.exon2;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13700199 | 13700244 | 13700199 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13699953 | 13700105 | 13699953 | ID=MS.gene64859.t1.exon3;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13699953 | 13700105 | 13699953 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13699726 | 13699851 | 13699726 | ID=MS.gene64859.t1.exon4;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13699726 | 13699851 | 13699726 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13699206 | 13699295 | 13699206 | ID=MS.gene64859.t1.exon5;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13699206 | 13699295 | 13699206 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13698794 | 13699015 | 13698794 | ID=MS.gene64859.t1.exon6;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13698794 | 13699015 | 13698794 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13698492 | 13698590 | 13698492 | ID=MS.gene64859.t1.exon7;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13698492 | 13698590 | 13698492 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13698195 | 13698373 | 13698195 | ID=MS.gene64859.t1.exon8;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13698195 | 13698373 | 13698195 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
chr5.3 | exon | 13697600 | 13697744 | 13697600 | ID=MS.gene64859.t1.exon9;Parent=MS.gene64859.t1 |
chr5.3 | CDS | 13697600 | 13697744 | 13697600 | ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1 |
Gene Sequence |
Protein sequence |