AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64859


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64859.t1 MTR_5g023790 97.727 352 8 0 10 361 76 427 0.0 718
MS.gene64859.t1 MTR_5g023790 97.712 306 7 0 10 315 76 381 0.0 622
MS.gene64859.t1 MTR_8g074000 74.148 352 88 1 10 361 83 431 0.0 539
MS.gene64859.t1 MTR_5g023790 97.166 247 7 0 10 256 76 322 3.77e-178 498
MS.gene64859.t1 MTR_5g088980 46.125 271 143 3 89 357 148 417 2.11e-78 247
MS.gene64859.t1 MTR_7g089080 46.403 278 138 3 89 358 182 456 2.21e-77 259
MS.gene64859.t1 MTR_1g011470 40.074 272 155 4 89 353 145 415 2.62e-60 200
MS.gene64859.t1 MTR_3g107970 41.221 262 147 3 99 353 206 467 9.18e-58 195
MS.gene64859.t1 MTR_3g088415 37.847 288 161 8 79 354 216 497 3.10e-57 194
MS.gene64859.t1 MTR_2g102520 41.975 243 132 5 80 314 189 430 2.14e-53 183
MS.gene64859.t1 MTR_3g088405 36.429 280 167 6 90 359 228 506 3.54e-52 181
MS.gene64859.t1 MTR_2g102550 37.413 286 167 5 71 345 129 413 2.55e-51 177
MS.gene64859.t1 MTR_3g088415 41.228 228 124 5 79 299 216 440 3.62e-51 176
MS.gene64859.t1 MTR_1g018680 35.769 260 158 4 99 349 84 343 8.91e-47 163
MS.gene64859.t1 MTR_3g102510 34.263 251 158 3 106 349 74 324 6.96e-44 155
MS.gene64859.t1 MTR_3g060770 39.648 227 126 5 104 323 30 252 8.97e-43 150
MS.gene64859.t1 MTR_3g102520 33.852 257 161 4 102 349 87 343 4.50e-42 150
MS.gene64859.t1 MTR_3g102560 35.021 237 140 4 104 331 62 293 2.43e-40 145
MS.gene64859.t1 MTR_3g088415 42.857 175 96 3 79 252 216 387 5.52e-40 145
MS.gene64859.t1 MTR_3g102530 33.852 257 161 4 102 349 80 336 5.70e-40 145
MS.gene64859.t1 MTR_3g061680 36.726 226 132 5 104 322 20 241 1.12e-37 137
MS.gene64859.t1 MTR_3g060820 36.283 226 133 5 104 322 20 241 1.77e-36 133
MS.gene64859.t1 MTR_3g102540 33.200 250 150 6 110 349 13 255 2.33e-35 130
MS.gene64859.t1 MTR_3g060400 35.193 233 140 5 97 322 19 247 2.65e-35 130
MS.gene64859.t1 MTR_3g460990 35.193 233 140 5 97 322 19 247 2.65e-35 130
MS.gene64859.t1 MTR_3g060410 37.073 205 122 3 126 323 123 327 1.70e-34 130
MS.gene64859.t1 MTR_6g045270 32.143 252 152 8 105 349 45 284 1.54e-27 110
MS.gene64859.t1 MTR_5g011900 34.021 194 118 3 89 278 54 241 1.30e-25 103
MS.gene64859.t1 MTR_1g032850 32.569 218 138 4 108 317 336 552 6.86e-18 85.5
MS.gene64859.t1 MTR_5g044040 46.753 77 41 0 160 236 7 83 4.33e-17 77.0
MS.gene64859.t1 MTR_2g005960 27.848 158 96 4 60 199 72 229 6.75e-13 68.2
MS.gene64859.t1 MTR_3g103080 22.422 223 161 4 133 346 61 280 8.47e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64859.t1 AT1G20610 60.227 352 136 3 10 358 79 429 1.34e-150 431
MS.gene64859.t1 AT1G76310 60.955 356 126 4 10 358 81 430 3.78e-149 428
MS.gene64859.t1 AT2G17620 63.050 341 121 3 19 358 87 423 9.63e-147 422
MS.gene64859.t1 AT1G76310 56.510 384 126 5 10 358 81 458 1.92e-142 412
MS.gene64859.t1 AT4G35620 62.874 334 114 4 35 360 96 427 2.13e-132 385
MS.gene64859.t1 AT1G76310 59.425 313 114 4 10 315 81 387 6.90e-124 362
MS.gene64859.t1 AT4G35620 63.542 288 96 3 35 315 96 381 3.97e-113 334
MS.gene64859.t1 AT1G76310 58.268 254 93 4 10 256 81 328 7.45e-92 279
MS.gene64859.t1 AT1G20590 70.175 171 51 0 166 336 65 235 7.27e-87 263
MS.gene64859.t1 AT3G11520 40.282 355 196 6 14 360 66 412 5.22e-83 258
MS.gene64859.t1 AT5G06150 44.043 277 151 3 84 358 159 433 4.69e-82 257
MS.gene64859.t1 AT2G26760 45.318 267 143 3 85 349 109 374 1.99e-78 246
MS.gene64859.t1 AT1G16330 44.128 281 155 1 73 353 364 642 2.99e-78 253
MS.gene64859.t1 AT4G37490 44.366 284 151 4 81 358 140 422 1.34e-75 240
MS.gene64859.t1 AT3G11520 40.968 310 167 6 14 315 66 367 3.59e-72 229
MS.gene64859.t1 AT1G77390 39.405 269 155 4 89 350 162 429 2.55e-60 201
MS.gene64859.t1 AT5G11300 42.379 269 147 4 89 350 156 423 4.19e-57 192
MS.gene64859.t1 AT5G25380 39.925 268 153 4 89 349 157 423 4.61e-57 192
MS.gene64859.t1 AT5G25380 39.925 268 153 4 89 349 157 423 4.61e-57 192
MS.gene64859.t1 AT5G25380 39.925 268 153 4 89 349 163 429 8.69e-57 191
MS.gene64859.t1 AT5G43080 37.548 261 160 3 91 349 73 332 3.28e-56 187
MS.gene64859.t1 AT5G25380 39.924 263 150 4 89 344 157 418 6.82e-56 188
MS.gene64859.t1 AT1G44110 37.050 278 167 4 80 350 169 445 1.45e-55 189
MS.gene64859.t1 AT1G47210 39.552 268 152 5 91 349 88 354 1.08e-54 184
MS.gene64859.t1 AT5G43080 36.842 266 160 4 91 349 73 337 5.67e-54 182
MS.gene64859.t1 AT1G15570 39.700 267 153 4 90 349 173 438 1.19e-53 183
MS.gene64859.t1 AT1G80370 39.700 267 153 4 90 349 182 447 1.41e-53 183
MS.gene64859.t1 AT1G47220 39.925 268 151 5 91 349 42 308 5.23e-53 178
MS.gene64859.t1 AT5G11300 45.946 222 112 4 89 303 156 376 1.79e-52 179
MS.gene64859.t1 AT5G06150 47.802 182 89 4 84 263 159 336 7.31e-52 176
MS.gene64859.t1 AT1G47230 36.154 260 157 4 99 349 88 347 7.73e-49 169
MS.gene64859.t1 AT1G47230 36.015 261 157 5 99 349 88 348 4.25e-47 164
MS.gene64859.t1 AT1G34460 36.649 191 98 3 64 253 227 395 7.11e-35 134
MS.gene64859.t1 AT1G34460 36.649 191 98 3 64 253 227 395 7.11e-35 134
MS.gene64859.t1 AT1G34460 38.144 194 94 6 64 253 213 384 1.16e-34 133
MS.gene64859.t1 AT1G34460 38.144 194 94 6 64 253 227 398 1.29e-34 133
MS.gene64859.t1 AT1G34460 38.144 194 94 6 64 253 227 398 1.29e-34 133
MS.gene64859.t1 AT1G34460 38.144 194 94 6 64 253 227 398 1.29e-34 133
MS.gene64859.t1 AT1G34460 38.144 194 94 6 64 253 227 398 1.29e-34 133
MS.gene64859.t1 AT1G34460 38.144 194 94 6 64 253 227 398 1.71e-34 132
MS.gene64859.t1 AT1G34460 38.144 194 94 6 64 253 227 398 1.89e-34 132
MS.gene64859.t1 AT1G47210 44.762 105 54 3 91 192 88 191 3.11e-21 90.5
MS.gene64859.t1 AT1G14750 33.696 184 119 2 137 317 385 568 4.36e-21 95.1
MS.gene64859.t1 AT1G14750 33.696 184 119 2 137 317 385 568 5.20e-21 94.7
MS.gene64859.t1 AT1G14750 33.696 184 119 2 137 317 217 400 5.69e-21 94.0
MS.gene64859.t1 AT1G14750 33.696 184 118 3 137 317 217 399 8.08e-20 90.5

Find 64 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGAATGCTCTAGTTTAA+TGG 0.170801 5.3:-13697725 MS.gene64859:CDS
CCATTTCCAGAACTTCTTTC+CGG 0.210345 5.3:+13698793 None:intergenic
TTTCATGAGAAGGTTCTTAA+AGG 0.288446 5.3:-13698512 MS.gene64859:CDS
AAATCAAGTTCAAATGGATT+TGG 0.319295 5.3:-13700056 MS.gene64859:CDS
TGGTCTAGTGGCAATGCTTT+TGG 0.334805 5.3:-13698886 MS.gene64859:CDS
CTGTGTTTCACCAAACTATA+TGG 0.349277 5.3:-13699265 MS.gene64859:CDS
CATTTCCAGAACTTCTTTCC+GGG 0.354928 5.3:+13698794 None:intergenic
GCTGGGACAGGGAAACTTAC+AGG 0.367597 5.3:-13697685 MS.gene64859:CDS
TGAAAGGATGAGAGCTATAC+TGG 0.375881 5.3:-13699223 MS.gene64859:CDS
TTCTCCAGAAGAAAACTTGC+TGG 0.385990 5.3:+13697610 None:intergenic
AGTTGAGATGGAGGATATCA+TGG 0.409043 5.3:-13699824 MS.gene64859:CDS
TTGGCAAAATCAAGTTCAAA+TGG 0.410685 5.3:-13700062 MS.gene64859:CDS
TGCTCTAAAGCCATTGGCAC+TGG 0.419967 5.3:+13699987 None:intergenic
ACAAGAGGGTCATTTGCATC+AGG 0.433063 5.3:+13699775 None:intergenic
GGGGTGTCAATGTCCATAAC+AGG 0.441867 5.3:+13699796 None:intergenic
TCTGTTTGCTCTAAAGCCAT+TGG 0.446717 5.3:+13699981 None:intergenic
TGAGAAGAAACAAGCGGATC+CGG 0.456269 5.3:-13700678 MS.gene64859:intron
CTTATAGGAGGAAGTTGAGA+TGG 0.464867 5.3:-13699836 MS.gene64859:intron
AATTGCTGTGCCATATAGTT+TGG 0.468094 5.3:+13699255 None:intergenic
TATCATGGAAGAGCCTGTTA+TGG 0.468278 5.3:-13699809 MS.gene64859:CDS
GGCACTGGCTGATCCTCCAC+TGG 0.480548 5.3:+13700002 None:intergenic
GAGTTGATCTTCAGAGTAGT+TGG 0.480770 5.3:+13698197 None:intergenic
GTTGACTTTCACAAGAAGGC+TGG 0.486106 5.3:-13697703 MS.gene64859:CDS
TTTCACAAGAAGGCTGGGAC+AGG 0.486235 5.3:-13697697 MS.gene64859:CDS
ACAGCTCAATGCACTATGTA+TGG 0.490108 5.3:-13698255 MS.gene64859:CDS
CCGGAAAGAAGTTCTGGAAA+TGG 0.494858 5.3:-13698793 MS.gene64859:intron
ATACACCCGGAAAGAAGTTC+TGG 0.504153 5.3:-13698799 MS.gene64859:CDS
CGATCTGATTCGCTATGCAT+TGG 0.506937 5.3:+13699957 None:intergenic
ACTGGTTGACTGGCTTATTG+AGG 0.508362 5.3:-13699205 MS.gene64859:intron
GCTTCAGTTGGTTGGTCTAG+TGG 0.512653 5.3:-13698898 MS.gene64859:CDS
AACTACCAAAAGGTCAAACT+TGG 0.515338 5.3:-13700081 MS.gene64859:CDS
AATGGTTGACTTTCACAAGA+AGG 0.528684 5.3:-13697707 MS.gene64859:CDS
AGAAAGAAGCTTCAGTTGGT+TGG 0.531223 5.3:-13698906 MS.gene64859:CDS
GCAGCGGCAGCTAGTTGAGA+AGG 0.533466 5.3:+13698285 None:intergenic
ATAGGAGGAAGTTGAGATGG+AGG 0.543444 5.3:-13699833 MS.gene64859:intron
GAACCTTCTCATGAAAACAT+AGG 0.546868 5.3:+13698519 None:intergenic
GGAGGATCAGCCAGTGCCAA+TGG 0.555755 5.3:-13699997 MS.gene64859:CDS
CTCATGAAAACATAGGCTGT+TGG 0.556150 5.3:+13698526 None:intergenic
CTCTTACTACAGAAAAGTTG+AGG 0.560855 5.3:-13699725 MS.gene64859:intron
TGAGAGCTATACTGGTTGAC+TGG 0.562836 5.3:-13699215 MS.gene64859:CDS
AGCAATTTGACATTAATGAA+AGG 0.565905 5.3:-13699239 MS.gene64859:CDS
TTGAATAGGGAACTACCAAA+AGG 0.566910 5.3:-13700091 MS.gene64859:intron
TTGACTTTCACAAGAAGGCT+GGG 0.569949 5.3:-13697702 MS.gene64859:CDS
GAAGTTTCAGTGCCTGTGGT+TGG 0.581724 5.3:-13698849 MS.gene64859:CDS
CAAGAGGGTCATTTGCATCA+GGG 0.582184 5.3:+13699776 None:intergenic
GGTAAGAAAGAAGCTTCAGT+TGG 0.588907 5.3:-13698910 MS.gene64859:CDS
CATGAGAAGGTTCTTAAAGG+CGG 0.594323 5.3:-13698509 MS.gene64859:CDS
AAGAGGGTCATTTGCATCAG+GGG 0.600129 5.3:+13699777 None:intergenic
GCATAGCGAATCAGATCGGA+TGG 0.604904 5.3:-13699952 MS.gene64859:intron
AGAATTAGATCTCCAACCAC+AGG 0.618555 5.3:+13698837 None:intergenic
ATATATTCAGCAACTACAAG+AGG 0.618620 5.3:+13699760 None:intergenic
CAATGCATAGCGAATCAGAT+CGG 0.621608 5.3:-13699956 MS.gene64859:CDS
TATCAGACAGAGCATACACC+CGG 0.634548 5.3:-13698812 MS.gene64859:CDS
AGTGGAGTAAGACATGTGAA+TGG 0.637958 5.3:-13698224 MS.gene64859:CDS
TTCACAAGAAGGCTGGGACA+GGG 0.640634 5.3:-13697696 MS.gene64859:CDS
TGAGGAAGTTTCAGTGCCTG+TGG 0.654299 5.3:-13698853 MS.gene64859:CDS
TATATTCAGCAACTACAAGA+GGG 0.660089 5.3:+13699761 None:intergenic
GGAAACTTACAGGAGCACAT+AGG 0.667527 5.3:-13697675 MS.gene64859:CDS
TGATGAACACAAGCCAGTGG+AGG 0.670864 5.3:-13700015 MS.gene64859:CDS
GAAACAATGTCTCATGCATG+AGG 0.677202 5.3:+13698976 None:intergenic
CTATGTATGGTGTCAAACAG+TGG 0.683237 5.3:-13698242 MS.gene64859:CDS
TTGAGCTGTATAGACAGCAG+CGG 0.686693 5.3:+13698269 None:intergenic
TGATGATGAACACAAGCCAG+TGG 0.720589 5.3:-13700018 MS.gene64859:CDS
TGTTTGTGAGAAGAAACAAG+CGG 0.747744 5.3:-13700684 MS.gene64859:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAATAATTGAATTTAA+TGG - chr5.3:13698718-13698737 MS.gene64859:intron 10.0%
!! AGTTATGATAAAAAAAAAAA+TGG + chr5.3:13699855-13699874 None:intergenic 10.0%
!!! ATTAGTTATTGAAATTTTAT+TGG + chr5.3:13698974-13698993 None:intergenic 10.0%
!! ACTATATAAAAAAAAGGTTA+TGG + chr5.3:13700480-13700499 None:intergenic 15.0%
!!! AATATCTTTGTTTTTTCTTA+TGG + chr5.3:13697728-13697747 None:intergenic 15.0%
!!! GTTTTTTCTCAAATTATTAT+AGG + chr5.3:13698703-13698722 None:intergenic 15.0%
!! AAGTGATCATTATCAATATT+TGG + chr5.3:13699250-13699269 None:intergenic 20.0%
!! AGAAATTCAAATTACACTAA+AGG + chr5.3:13697694-13697713 None:intergenic 20.0%
!! AGTGATCATTATCAATATTT+GGG + chr5.3:13699249-13699268 None:intergenic 20.0%
!! ATATAACAAAATGACATCAT+AGG - chr5.3:13700409-13700428 MS.gene64859:intron 20.0%
!! ATTAATCCTATATTTAATCC+AGG + chr5.3:13699162-13699181 None:intergenic 20.0%
!! GAAATTCAAATTACACTAAA+GGG + chr5.3:13697693-13697712 None:intergenic 20.0%
!! GAGAGAATTTCAATATTAAT+TGG + chr5.3:13698952-13698971 None:intergenic 20.0%
!! GTATTTGTAATTAGTAACTA+TGG + chr5.3:13699885-13699904 None:intergenic 20.0%
!! TATAACAAAATGACATCATA+GGG - chr5.3:13700410-13700429 MS.gene64859:intron 20.0%
!! TCTTGATTTACTGTTATATT+AGG - chr5.3:13698041-13698060 MS.gene64859:intron 20.0%
!! TGATAAAAAAAAAAATGGCA+TGG + chr5.3:13699850-13699869 None:intergenic 20.0%
!! TTTAGTGTAATTTGAATTTC+TGG - chr5.3:13697693-13697712 MS.gene64859:CDS 20.0%
!!! GAATTAATGATTTAAGTTTC+TGG - chr5.3:13697654-13697673 MS.gene64859:CDS 20.0%
! AAATGGCATGGAAATATATT+AGG + chr5.3:13699838-13699857 None:intergenic 25.0%
! AATGTAGCAAAATTTCACAA+AGG + chr5.3:13698127-13698146 None:intergenic 25.0%
! AGCAATTTGACATTAATGAA+AGG - chr5.3:13699046-13699065 MS.gene64859:intron 25.0%
! ATAAAAGTGATATACTCCTA+TGG + chr5.3:13698902-13698921 None:intergenic 25.0%
! CAAACCTTAATCTTATATTG+CGG - chr5.3:13699628-13699647 MS.gene64859:intron 25.0%
! CATTCAAAATCTTAGTCAAA+AGG + chr5.3:13698163-13698182 None:intergenic 25.0%
! GCAATATAAGATTAAGGTTT+GGG + chr5.3:13699629-13699648 None:intergenic 25.0%
! GTGATCATTATCAATATTTG+GGG + chr5.3:13699248-13699267 None:intergenic 25.0%
! TCTAATTAGTGAGAGAATTT+AGG + chr5.3:13698879-13698898 None:intergenic 25.0%
! TGATCATTATCAATATTTGG+GGG + chr5.3:13699247-13699266 None:intergenic 25.0%
! TGATTTACTGTTATATTAGG+AGG - chr5.3:13698044-13698063 MS.gene64859:intron 25.0%
! TTGAGATAAGTGTTTGAATT+TGG - chr5.3:13697746-13697765 MS.gene64859:intron 25.0%
!! AAATCAAGTTCAAATGGATT+TGG - chr5.3:13698229-13698248 MS.gene64859:CDS 25.0%
!! ATTTGTGTGTAAAATTTTGC+AGG - chr5.3:13699695-13699714 MS.gene64859:intron 25.0%
!! CAACAACTAAACTTTGAAAA+AGG + chr5.3:13698412-13698431 None:intergenic 25.0%
!! CAATCTTATAGACAGATTTT+TGG - chr5.3:13699339-13699358 MS.gene64859:intron 25.0%
!! TGACTAAGATTTTGAATGTT+GGG - chr5.3:13698165-13698184 MS.gene64859:intron 25.0%
!! TGTAATTTGAATTTCTGGAT+TGG - chr5.3:13697698-13697717 MS.gene64859:CDS 25.0%
!! TTGACTAAGATTTTGAATGT+TGG - chr5.3:13698164-13698183 MS.gene64859:intron 25.0%
!!! AATGATTTAAGTTTCTGGTT+TGG - chr5.3:13697659-13697678 MS.gene64859:CDS 25.0%
!!! ATGCTACATAGTTTTTGATT+TGG + chr5.3:13697784-13697803 None:intergenic 25.0%
!!! CAAGTCAATAGCATTTTTTA+AGG + chr5.3:13699136-13699155 None:intergenic 25.0%
!!! TGTCAAATAATTGGTCTTAT+AGG - chr5.3:13698434-13698453 MS.gene64859:intron 25.0%
AAATGCTTCCATTGACATTA+GGG + chr5.3:13698801-13698820 None:intergenic 30.0%
AGAACACTTATCTGATCATT+TGG - chr5.3:13698604-13698623 MS.gene64859:intron 30.0%
ATATATTCAGCAACTACAAG+AGG + chr5.3:13698528-13698547 None:intergenic 30.0%
CGCAATATAAGATTAAGGTT+TGG + chr5.3:13699630-13699649 None:intergenic 30.0%
TAAATGCTTCCATTGACATT+AGG + chr5.3:13698802-13698821 None:intergenic 30.0%
TATATTCAGCAACTACAAGA+GGG + chr5.3:13698527-13698546 None:intergenic 30.0%
TTATCAATATTTGGGGGAAA+TGG + chr5.3:13699241-13699260 None:intergenic 30.0%
TTGCATCCTGGATTAAATAT+AGG - chr5.3:13699153-13699172 MS.gene64859:intron 30.0%
TTGGCAAAATCAAGTTCAAA+TGG - chr5.3:13698223-13698242 MS.gene64859:CDS 30.0%
TTTCATGAGAAGGTTCTTAA+AGG - chr5.3:13699773-13699792 MS.gene64859:CDS 30.0%
! AAGTGTTGCTAAAATGATGA+TGG - chr5.3:13698013-13698032 MS.gene64859:intron 30.0%
! GACTAAGATTTTGAATGTTG+GGG - chr5.3:13698166-13698185 MS.gene64859:intron 30.0%
! GCATTGACAATTCAGATTAT+TGG - chr5.3:13697800-13697819 MS.gene64859:intron 30.0%
! GTTGTTGACTGTCAAATAAT+TGG - chr5.3:13698425-13698444 MS.gene64859:intron 30.0%
! TTTAACCACATCTGATAATG+TGG + chr5.3:13697855-13697874 None:intergenic 30.0%
!! CAAATAATTGGTCTTATAGG+AGG - chr5.3:13698437-13698456 MS.gene64859:intron 30.0%
!! TAAGATGACTGCAGTTTTAA+AGG + chr5.3:13699550-13699569 None:intergenic 30.0%
!! TCGTCGGAATTTTTAGAAAA+AGG + chr5.3:13699663-13699682 None:intergenic 30.0%
AAAACTATGCGCAATTGTGT+TGG - chr5.3:13700181-13700200 MS.gene64859:intron 35.0%
AAATCTCAGTTACTTGTCGT+CGG + chr5.3:13699679-13699698 None:intergenic 35.0%
AACTACCAAAAGGTCAAACT+TGG - chr5.3:13698204-13698223 MS.gene64859:CDS 35.0%
AATTGCTGTGCCATATAGTT+TGG + chr5.3:13699033-13699052 None:intergenic 35.0%
AATTTGTCATGCACCTGAAA+AGG + chr5.3:13699286-13699305 None:intergenic 35.0%
ATGTTGGGGTCAATTTGAAT+AGG - chr5.3:13698180-13698199 MS.gene64859:intron 35.0%
ATTAATTCCTCACCTAGTGA+TGG + chr5.3:13697642-13697661 None:intergenic 35.0%
ATTTGTCATGCACCTGAAAA+GGG + chr5.3:13699285-13699304 None:intergenic 35.0%
CACAAAAACAACTAATGCTG+AGG - chr5.3:13698087-13698106 MS.gene64859:intron 35.0%
CAGAAAAGTTGAGGTACATT+TGG - chr5.3:13698569-13698588 MS.gene64859:CDS 35.0%
CTCTTACTACAGAAAAGTTG+AGG - chr5.3:13698560-13698579 MS.gene64859:CDS 35.0%
CTGTGTTTCACCAAACTATA+TGG - chr5.3:13699020-13699039 MS.gene64859:intron 35.0%
CTTAATCTTATATTGCGGCA+GGG - chr5.3:13699633-13699652 MS.gene64859:intron 35.0%
GAACCTTCTCATGAAAACAT+AGG + chr5.3:13699769-13699788 None:intergenic 35.0%
GAATAAGCCTTCGATTTAGT+TGG + chr5.3:13700149-13700168 None:intergenic 35.0%
GAGATCAAAAGACTATGCAT+CGG - chr5.3:13700333-13700352 MS.gene64859:intron 35.0%
GGTGACATTGAAAATCTTTG+TGG - chr5.3:13699580-13699599 MS.gene64859:intron 35.0%
GTATCTACATCTACATGTCA+CGG - chr5.3:13697913-13697932 MS.gene64859:intron 35.0%
GTGACATGTAGATGTAGATA+CGG + chr5.3:13697914-13697933 None:intergenic 35.0%
TCTCTCACTAATTAGACCAT+AGG - chr5.3:13698883-13698902 MS.gene64859:CDS 35.0%
TGTTGGGGTCAATTTGAATA+GGG - chr5.3:13698181-13698200 MS.gene64859:intron 35.0%
TGTTTGTGAGAAGAAACAAG+CGG - chr5.3:13697601-13697620 MS.gene64859:CDS 35.0%
TTAAGGCATAGTGATTCAGA+AGG + chr5.3:13699119-13699138 None:intergenic 35.0%
TTAATTCCTCACCTAGTGAT+GGG + chr5.3:13697641-13697660 None:intergenic 35.0%
TTGAATAGGGAACTACCAAA+AGG - chr5.3:13698194-13698213 MS.gene64859:intron 35.0%
! AATGGTTGACTTTCACAAGA+AGG - chr5.3:13700578-13700597 MS.gene64859:intron 35.0%
! CAGAGAATGCTCTAGTTTAA+TGG - chr5.3:13700560-13700579 MS.gene64859:intron 35.0%
! CAGTCATCTTACATTTTCTG+CGG - chr5.3:13699559-13699578 MS.gene64859:intron 35.0%
! GTGTAAAATTTTGCAGGAGA+AGG - chr5.3:13699701-13699720 MS.gene64859:intron 35.0%
! TCTAGTTCCAACTAAATCGA+AGG - chr5.3:13700139-13700158 MS.gene64859:intron 35.0%
! TTTTGCCAAGTTTGACCTTT+TGG + chr5.3:13698212-13698231 None:intergenic 35.0%
!! ATTTTTGGAAAAGCAGTCTG+TGG - chr5.3:13699354-13699373 MS.gene64859:intron 35.0%
!! TCATTTTAGCAACACTTGCA+TGG + chr5.3:13698010-13698029 None:intergenic 35.0%
ACAGCTCAATGCACTATGTA+TGG - chr5.3:13700030-13700049 MS.gene64859:CDS 40.0%
AGAAAGAAGCTTCAGTTGGT+TGG - chr5.3:13699379-13699398 MS.gene64859:intron 40.0%
AGAATTAGATCTCCAACCAC+AGG + chr5.3:13699451-13699470 None:intergenic 40.0%
AGTGGAGTAAGACATGTGAA+TGG - chr5.3:13700061-13700080 MS.gene64859:CDS 40.0%
AGTTGAGATGGAGGATATCA+TGG - chr5.3:13698461-13698480 MS.gene64859:intron 40.0%
CAATGCATAGCGAATCAGAT+CGG - chr5.3:13698329-13698348 MS.gene64859:CDS 40.0%
CATGAGAAGGTTCTTAAAGG+CGG - chr5.3:13699776-13699795 MS.gene64859:CDS 40.0%
CATTTCCAGAACTTCTTTCC+GGG + chr5.3:13699494-13699513 None:intergenic 40.0%
CCATTTCCAGAACTTCTTTC+CGG + chr5.3:13699495-13699514 None:intergenic 40.0%
CCTGCCGCAATATAAGATTA+AGG + chr5.3:13699635-13699654 None:intergenic 40.0%
CCTTAATCTTATATTGCGGC+AGG - chr5.3:13699632-13699651 MS.gene64859:intron 40.0%
CTCATGAAAACATAGGCTGT+TGG + chr5.3:13699762-13699781 None:intergenic 40.0%
CTTATAGGAGGAAGTTGAGA+TGG - chr5.3:13698449-13698468 MS.gene64859:intron 40.0%
GAAACAATGTCTCATGCATG+AGG + chr5.3:13699312-13699331 None:intergenic 40.0%
GGTAAGAAAGAAGCTTCAGT+TGG - chr5.3:13699375-13699394 MS.gene64859:intron 40.0%
TATCATGGAAGAGCCTGTTA+TGG - chr5.3:13698476-13698495 MS.gene64859:intron 40.0%
TGAAAGGATGAGAGCTATAC+TGG - chr5.3:13699062-13699081 MS.gene64859:intron 40.0%
TTCTCCAGAAGAAAACTTGC+TGG + chr5.3:13700678-13700697 None:intergenic 40.0%
TTGACTTTCACAAGAAGGCT+GGG - chr5.3:13700583-13700602 MS.gene64859:intron 40.0%
! AATTTTGCAGGAGAAGGTGA+TGG - chr5.3:13699707-13699726 MS.gene64859:intron 40.0%
! CAGCCTATGTTTTCATGAGA+AGG - chr5.3:13699763-13699782 MS.gene64859:CDS 40.0%
! CTATGTATGGTGTCAAACAG+TGG - chr5.3:13700043-13700062 MS.gene64859:CDS 40.0%
! GAGTTGATCTTCAGAGTAGT+TGG + chr5.3:13700091-13700110 None:intergenic 40.0%
! GTTTTGCATGAACCCTTTTC+AGG - chr5.3:13699270-13699289 MS.gene64859:CDS 40.0%
! TGAACCAGCAAGTTTTCTTC+TGG - chr5.3:13700671-13700690 MS.gene64859:intron 40.0%
!! AATGCTATTGACTTGCATCC+TGG - chr5.3:13699141-13699160 MS.gene64859:intron 40.0%
!! TCTGTTTGCTCTAAAGCCAT+TGG + chr5.3:13698307-13698326 None:intergenic 40.0%
AAGAGGGTCATTTGCATCAG+GGG + chr5.3:13698511-13698530 None:intergenic 45.0%
ACAAGAGGGTCATTTGCATC+AGG + chr5.3:13698513-13698532 None:intergenic 45.0%
ATACACCCGGAAAGAAGTTC+TGG - chr5.3:13699486-13699505 MS.gene64859:intron 45.0%
ATAGGAGGAAGTTGAGATGG+AGG - chr5.3:13698452-13698471 MS.gene64859:intron 45.0%
CAAGAGGGTCATTTGCATCA+GGG + chr5.3:13698512-13698531 None:intergenic 45.0%
CTATGTGTCAGTGTGGTGTA+TGG + chr5.3:13698677-13698696 None:intergenic 45.0%
TAGGTGTCTATGTGTCAGTG+TGG + chr5.3:13698684-13698703 None:intergenic 45.0%
TATCAGACAGAGCATACACC+CGG - chr5.3:13699473-13699492 MS.gene64859:intron 45.0%
TGAGAAGAAACAAGCGGATC+CGG - chr5.3:13697607-13697626 MS.gene64859:CDS 45.0%
TGGTTGAGCCCTAATGTCAA+TGG - chr5.3:13698790-13698809 MS.gene64859:intron 45.0%
TTGAGCTGTATAGACAGCAG+CGG + chr5.3:13700019-13700038 None:intergenic 45.0%
! CACATCTGATAATGTGGCGT+CGG + chr5.3:13697849-13697868 None:intergenic 45.0%
! CGATCTGATTCGCTATGCAT+TGG + chr5.3:13698331-13698350 None:intergenic 45.0%
! GCTTTTGGCATGCAAGTATG+AGG - chr5.3:13699414-13699433 MS.gene64859:intron 45.0%
! GGAAACTTACAGGAGCACAT+AGG - chr5.3:13700610-13700629 MS.gene64859:intron 45.0%
! GTTGACTTTCACAAGAAGGC+TGG - chr5.3:13700582-13700601 MS.gene64859:intron 45.0%
! TAGCAGCTCAAGCTGTTTCA+TGG + chr5.3:13699926-13699945 None:intergenic 45.0%
! TGAGAGCTATACTGGTTGAC+TGG - chr5.3:13699070-13699089 MS.gene64859:intron 45.0%
! TGATGATGAACACAAGCCAG+TGG - chr5.3:13698267-13698286 MS.gene64859:CDS 45.0%
! TGGTCTAGTGGCAATGCTTT+TGG - chr5.3:13699399-13699418 MS.gene64859:intron 45.0%
!! ACTGGTTGACTGGCTTATTG+AGG - chr5.3:13699080-13699099 MS.gene64859:intron 45.0%
!! CCGGAAAGAAGTTCTGGAAA+TGG - chr5.3:13699492-13699511 MS.gene64859:intron 45.0%
!! ATAATAACTATATAAAAAAA+AGG + chr5.3:13700486-13700505 None:intergenic 5.0%
ACATTAGGGCTCAACCAGAG+TGG + chr5.3:13698787-13698806 None:intergenic 50.0%
CGACGCCACATTATCAGATG+TGG - chr5.3:13697847-13697866 MS.gene64859:intron 50.0%
GAAGTTTCAGTGCCTGTGGT+TGG - chr5.3:13699436-13699455 MS.gene64859:intron 50.0%
GCATAGCGAATCAGATCGGA+TGG - chr5.3:13698333-13698352 MS.gene64859:CDS 50.0%
TGAGGAAGTTTCAGTGCCTG+TGG - chr5.3:13699432-13699451 MS.gene64859:intron 50.0%
TGATGAACACAAGCCAGTGG+AGG - chr5.3:13698270-13698289 MS.gene64859:CDS 50.0%
TTCACAAGAAGGCTGGGACA+GGG - chr5.3:13700589-13700608 MS.gene64859:intron 50.0%
TTTCACAAGAAGGCTGGGAC+AGG - chr5.3:13700588-13700607 MS.gene64859:intron 50.0%
! GGGGTGTCAATGTCCATAAC+AGG + chr5.3:13698492-13698511 None:intergenic 50.0%
!! CTAGTGATGGGTCGATGAAC+CGG + chr5.3:13697629-13697648 None:intergenic 50.0%
!! GCTTCAGTTGGTTGGTCTAG+TGG - chr5.3:13699387-13699406 MS.gene64859:intron 50.0%
!! TGCTCTAAAGCCATTGGCAC+TGG + chr5.3:13698301-13698320 None:intergenic 50.0%
ACACCTGTCCACATCCACTC+TGG - chr5.3:13698770-13698789 MS.gene64859:intron 55.0%
CAACCAGAGTGGATGTGGAC+AGG + chr5.3:13698776-13698795 None:intergenic 55.0%
CACGGTGTCTCTGTCATGTC+AGG - chr5.3:13697931-13697950 MS.gene64859:intron 55.0%
CATCGACCCATCACTAGGTG+AGG - chr5.3:13697632-13697651 MS.gene64859:CDS 55.0%
CGGTTCATCGACCCATCACT+AGG - chr5.3:13697627-13697646 MS.gene64859:CDS 55.0%
GCTGGGACAGGGAAACTTAC+AGG - chr5.3:13700600-13700619 MS.gene64859:intron 55.0%
GCAGCGGCAGCTAGTTGAGA+AGG + chr5.3:13700003-13700022 None:intergenic 60.0%
GGAGGATCAGCCAGTGCCAA+TGG - chr5.3:13698288-13698307 MS.gene64859:CDS 60.0%
GGGCTCAACCAGAGTGGATG+TGG + chr5.3:13698781-13698800 None:intergenic 60.0%
!! GGCACTGGCTGATCCTCCAC+TGG + chr5.3:13698286-13698305 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 13697600 13700707 13697600 ID=MS.gene64859
chr5.3 mRNA 13697600 13700707 13697600 ID=MS.gene64859.t1;Parent=MS.gene64859
chr5.3 exon 13700679 13700707 13700679 ID=MS.gene64859.t1.exon1;Parent=MS.gene64859.t1
chr5.3 CDS 13700679 13700707 13700679 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13700199 13700244 13700199 ID=MS.gene64859.t1.exon2;Parent=MS.gene64859.t1
chr5.3 CDS 13700199 13700244 13700199 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13699953 13700105 13699953 ID=MS.gene64859.t1.exon3;Parent=MS.gene64859.t1
chr5.3 CDS 13699953 13700105 13699953 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13699726 13699851 13699726 ID=MS.gene64859.t1.exon4;Parent=MS.gene64859.t1
chr5.3 CDS 13699726 13699851 13699726 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13699206 13699295 13699206 ID=MS.gene64859.t1.exon5;Parent=MS.gene64859.t1
chr5.3 CDS 13699206 13699295 13699206 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13698794 13699015 13698794 ID=MS.gene64859.t1.exon6;Parent=MS.gene64859.t1
chr5.3 CDS 13698794 13699015 13698794 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13698492 13698590 13698492 ID=MS.gene64859.t1.exon7;Parent=MS.gene64859.t1
chr5.3 CDS 13698492 13698590 13698492 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13698195 13698373 13698195 ID=MS.gene64859.t1.exon8;Parent=MS.gene64859.t1
chr5.3 CDS 13698195 13698373 13698195 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
chr5.3 exon 13697600 13697744 13697600 ID=MS.gene64859.t1.exon9;Parent=MS.gene64859.t1
chr5.3 CDS 13697600 13697744 13697600 ID=cds.MS.gene64859.t1;Parent=MS.gene64859.t1
Gene Sequence

>MS.gene64859

ATGTTTGTGAGAAGAAACAAGCGGATCCGGTTCATCGACCCATCACTAGGTGAGGAATTAATGATTTAAGTTTCTGGTTTGGTTCATAGACCCTTTAGTGTAATTTGAATTTCTGGATTGGTTGACCATAAGAAAAAACAAAGATATTGAGATAAGTGTTTGAATTTGGCAATTTTAAAAACCAAATCAAAAACTATGTAGCATTGACAATTCAGATTATTGGCATGTCTAGTGTTCGACAGAAGTCCGACGCCACATTATCAGATGTGGTTAAATTCAATTACTATTATTTTCTTGAATTAATTTGTCATCCGTATCTACATCTACATGTCACGGTGTCTCTGTCATGTCAGGTGTCTGTGTCAGTGCGTTATAGATCAGAAATAATAGAATTTTTCATCTTATTTCCATGCAAGTGTTGCTAAAATGATGATGGACTTATCTTGATTTACTGTTATATTAGGAGGTTTGCTGCAAAGATTGCTAACACAAAAACAACTAATGCTGAGGTAGAATCTTTTATTCCTTTGTGAAATTTTGCTACATTGTACAGATTCTTACCTTTTGACTAAGATTTTGAATGTTGGGGTCAATTTGAATAGGGAACTACCAAAAGGTCAAACTTGGCAAAATCAAGTTCAAATGGATTTGGAGATTTCATATTTGTTGATGATGAACACAAGCCAGTGGAGGATCAGCCAGTGCCAATGGCTTTAGAGCAAACAGAACCAATGCATAGCGAATCAGATCGGATGGTAATTCTTTAATGTCTTGTTTATTTAATTTGTTAATAAGTTCAAATTTTAAATCCTTTTTCAAAGTTTAGTTGTTGACTGTCAAATAATTGGTCTTATAGGAGGAAGTTGAGATGGAGGATATCATGGAAGAGCCTGTTATGGACATTGACACCCCTGATGCAAATGACCCTCTTGTAGTTGCTGAATATATCGAAGATCTTTACTCTTACTACAGAAAAGTTGAGGTACATTTGGAATTAATATATTAGAACACTTATCTGATCATTTGGATTTTATTTCAAATGAGATATATGAAGCAATGACTTAGTCACAGACACCATACACCACACTGACACATAGACACCTATAATAATTTGAGAAAAAACAATAATTGAATTTAATGGTGTGTCATTTTCACACTGACATATGTTTGACACCTGTCCACATCCACTCTGGTTGAGCCCTAATGTCAATGGAAGCATTTATTGTATTTTCTCTTTTATTATAACTTTTTTCACTGTATTTAACAAATTTATACTCCTAAATTCTCTCACTAATTAGACCATAGGAGTATATCACTTTTATAGTTTTATGTAAATTGATTTCAGAATTCCAATTAATATTGAAATTCTCTCCAATAAAATTTCAATAACTAATAGCATTAACTACATGCAGAGTACTAGCTGTGTTTCACCAAACTATATGGCACAGCAATTTGACATTAATGAAAGGATGAGAGCTATACTGGTTGACTGGCTTATTGAGGTATATTCAATGTTCCTTCTGAATCACTATGCCTTAAAAAATGCTATTGACTTGCATCCTGGATTAAATATAGGATTAATTATGTCTAAACATAATTAACTCTTAAATATAATTATCATTAACTTTTTTGTAAATTCCATTTCCCCCAAATATTGATAATGATCACTTGTTTTGCATGAACCCTTTTCAGGTGCATGACAAATTCGACCTCATGCATGAGACATTGTTTCTCACTGTCAATCTTATAGACAGATTTTTGGAAAAGCAGTCTGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTCTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCAGTGCCTGTGGTTGGAGATCTAATTCTTATATCAGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGTAACATTTCTTTGCTTGCTTATTGTGTCAGAACCTTTAAAACTGCAGTCATCTTACATTTTCTGCGGTGACATTGAAAATCTTTGTGGAGCGACTGCAGAGACATAAAAAACCCAAACCTTAATCTTATATTGCGGCAGGGCAGACCTTTTTCTAAAAATTCCGACGACAAGTAACTGAGATTTGTGTGTAAAATTTTGCAGGAGAAGGTGATGGTAAATGCATTGAAGTTTAACATATCTGTGCCAACAGCCTATGTTTTCATGAGAAGGTTCTTAAAGGCGGCTCAAGCAGACAGAAAAGTAAGTACTCAAATTTCTGCCTAATATATTTCCATGCCATTTTTTTTTTTATCATAACTAGCAATACCATAGTTACTAATTACAAATACTTTTTGCTATATTGCTCACCATGAAACAGCTTGAGCTGCTAGCTTTCTTCTTGATTGAGCTATCTCTTGTAGAATATGCAATGTTGAAGTTCTCTCCTTCTCAACTAGCTGCCGCTGCTGTCTATACAGCTCAATGCACTATGTATGGTGTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTACTCTGAAGATCAACTCTTGTAAGCATTTTAAAGTTCAGTCTTTTTCTAGTTCCAACTAAATCGAAGGCTTATTCATTATGAGTTCAAAAACTATGCGCAATTGTGTTGGTCTATAAAAATTGAACATTCAATCATATCACACATGTAGATATTTGTTGAGAAATATAACAAAGCTAGACATCATTATGAGTTATGATATGATTAGATGTACGTGTAAACTACTAACTAGTAATTCTTTGAGATCAAAAGACTATGCATCGGAGTAGAAGAATCGTGCATTCAATCTTATCACACATGTTGATATTTGTTGAGAGATATAACAAAATGACATCATAGGGAGATACGATTAGATGCATCTGTAGATCATTTTACAAAATCAGTGCCATAACCTTTTTTTTATATAGTTATTATGAAATGTATGCTAAATAAATACTAAATAGTGACTGCTTTGTTTGTGACTACTTACAGAGAATGCTCTAGTTTAATGGTTGACTTTCACAAGAAGGCTGGGACAGGGAAACTTACAGGAGCACATAGGAAGTATTGCACATCAAAATTTAGCTATACTGCGAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACGAGTTGTAG

Protein sequence

>MS.gene64859.t1

MFVRRNKRIRRFAAKIANTKTTNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMHSESDRMEEVEMEDIMEEPVMDIDTPDANDPLVVAEYIEDLYSYYRKVESTSCVSPNYMAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNALKFNISVPTAYVFMRRFLKAAQADRKLELLAFFLIELSLVEYAMLKFSPSQLAAAAVYTAQCTMYGVKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFSYTAKCEPASFLLENEL