Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65301.t1 | CAA55272.1 | 99.5 | 411 | 2 | 0 | 3 | 413 | 18 | 428 | 4.90E-215 | 756.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65301.t1 | P46277 | 99.0 | 411 | 4 | 0 | 3 | 413 | 18 | 428 | 8.4e-216 | 750.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65301.t1 | Q40337 | 99.5 | 411 | 2 | 0 | 3 | 413 | 18 | 428 | 3.5e-215 | 756.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene65301 | 0.834261 | 3.32E-56 | -1.69E-46 |
| MS.gene049596 | MS.gene65301 | 0.820774 | 5.74E-53 | -1.69E-46 |
| MS.gene049844 | MS.gene65301 | 0.822114 | 2.82E-53 | -1.69E-46 |
| MS.gene049989 | MS.gene65301 | 0.862291 | 5.62E-64 | -1.69E-46 |
| MS.gene050297 | MS.gene65301 | 0.848755 | 5.01E-60 | -1.69E-46 |
| MS.gene050875 | MS.gene65301 | 0.825125 | 5.56E-54 | -1.69E-46 |
| MS.gene05124 | MS.gene65301 | 0.843962 | 1.01E-58 | -1.69E-46 |
| MS.gene051339 | MS.gene65301 | 0.808437 | 3.10E-50 | -1.69E-46 |
| MS.gene051742 | MS.gene65301 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene051816 | MS.gene65301 | 0.830326 | 3.13E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene65301 | 0.831059 | 2.07E-55 | -1.69E-46 |
| MS.gene051914 | MS.gene65301 | 0.89358 | 5.51E-75 | -1.69E-46 |
| MS.gene051955 | MS.gene65301 | 0.851767 | 7.16E-61 | -1.69E-46 |
| MS.gene052143 | MS.gene65301 | 0.871683 | 5.67E-67 | -1.69E-46 |
| MS.gene052169 | MS.gene65301 | 0.830698 | 2.54E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene65301 | 0.916135 | 2.56E-85 | -1.69E-46 |
| MS.gene052367 | MS.gene65301 | 0.915942 | 3.23E-85 | -1.69E-46 |
| MS.gene053173 | MS.gene65301 | 0.912294 | 2.30E-83 | -1.69E-46 |
| MS.gene053348 | MS.gene65301 | 0.875182 | 3.77E-68 | -1.69E-46 |
| MS.gene053416 | MS.gene65301 | 0.859845 | 3.12E-63 | -1.69E-46 |
| MS.gene053417 | MS.gene65301 | 0.859969 | 2.86E-63 | -1.69E-46 |
| MS.gene05369 | MS.gene65301 | 0.825998 | 3.45E-54 | -1.69E-46 |
| MS.gene054459 | MS.gene65301 | 0.846964 | 1.56E-59 | -1.69E-46 |
| MS.gene054551 | MS.gene65301 | 0.916704 | 1.29E-85 | -1.69E-46 |
| MS.gene054552 | MS.gene65301 | 0.845122 | 4.94E-59 | -1.69E-46 |
| MS.gene054593 | MS.gene65301 | 0.901293 | 3.10E-78 | -1.69E-46 |
| MS.gene054633 | MS.gene65301 | 0.868776 | 5.08E-66 | -1.69E-46 |
| MS.gene054643 | MS.gene65301 | 0.806652 | 7.41E-50 | -1.69E-46 |
| MS.gene054662 | MS.gene65301 | 0.885527 | 7.53E-72 | -1.69E-46 |
| MS.gene054885 | MS.gene65301 | 0.842703 | 2.20E-58 | -1.69E-46 |
| MS.gene054941 | MS.gene65301 | 0.812996 | 3.20E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene65301 | 0.907938 | 2.95E-81 | -1.69E-46 |
| MS.gene055578 | MS.gene65301 | 0.916875 | 1.05E-85 | -1.69E-46 |
| MS.gene055579 | MS.gene65301 | 0.842743 | 2.15E-58 | -1.69E-46 |
| MS.gene055957 | MS.gene65301 | 0.883031 | 6.33E-71 | -1.69E-46 |
| MS.gene056041 | MS.gene65301 | 0.920425 | 1.30E-87 | -1.69E-46 |
| MS.gene056042 | MS.gene65301 | 0.823668 | 1.22E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene65301 | 0.917529 | 4.75E-86 | -1.69E-46 |
| MS.gene056526 | MS.gene65301 | 0.858953 | 5.78E-63 | -1.69E-46 |
| MS.gene056528 | MS.gene65301 | 0.849051 | 4.14E-60 | -1.69E-46 |
| MS.gene05652 | MS.gene65301 | 0.866331 | 3.08E-65 | -1.69E-46 |
| MS.gene05732 | MS.gene65301 | 0.842226 | 2.94E-58 | -1.69E-46 |
| MS.gene057358 | MS.gene65301 | 0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene057359 | MS.gene65301 | 0.803042 | 4.21E-49 | -1.69E-46 |
| MS.gene057367 | MS.gene65301 | 0.859022 | 5.51E-63 | -1.69E-46 |
| MS.gene057458 | MS.gene65301 | 0.900471 | 7.09E-78 | -1.69E-46 |
| MS.gene057483 | MS.gene65301 | 0.815145 | 1.07E-51 | -1.69E-46 |
| MS.gene057669 | MS.gene65301 | 0.822429 | 2.38E-53 | -1.69E-46 |
| MS.gene058013 | MS.gene65301 | 0.816543 | 5.24E-52 | -1.69E-46 |
| MS.gene058128 | MS.gene65301 | 0.893591 | 5.45E-75 | -1.69E-46 |
| MS.gene058818 | MS.gene65301 | 0.836524 | 8.90E-57 | -1.69E-46 |
| MS.gene058827 | MS.gene65301 | 0.82078 | 5.72E-53 | -1.69E-46 |
| MS.gene058828 | MS.gene65301 | 0.800831 | 1.20E-48 | -1.69E-46 |
| MS.gene058844 | MS.gene65301 | 0.808198 | 3.48E-50 | -1.69E-46 |
| MS.gene058849 | MS.gene65301 | 0.824099 | 9.70E-54 | -1.69E-46 |
| MS.gene058853 | MS.gene65301 | 0.90512 | 6.00E-80 | -1.69E-46 |
| MS.gene05926 | MS.gene65301 | 0.814875 | 1.23E-51 | -1.69E-46 |
| MS.gene059553 | MS.gene65301 | 0.858459 | 8.12E-63 | -1.69E-46 |
| MS.gene059616 | MS.gene65301 | 0.868124 | 8.24E-66 | -1.69E-46 |
| MS.gene060473 | MS.gene65301 | 0.896281 | 4.29E-76 | -1.69E-46 |
| MS.gene060565 | MS.gene65301 | 0.882544 | 9.53E-71 | -1.69E-46 |
| MS.gene06057 | MS.gene65301 | 0.803849 | 2.86E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene65301 | 0.929054 | 1.20E-92 | -1.69E-46 |
| MS.gene060985 | MS.gene65301 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene65301 | 0.89975 | 1.45E-77 | -1.69E-46 |
| MS.gene061260 | MS.gene65301 | 0.912444 | 1.93E-83 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65301 | MS.gene000462 | PPI |
| MS.gene65301 | MS.gene015942 | PPI |
| MS.gene65301 | MS.gene067144 | PPI |
| MS.gene65301 | MS.gene014786 | PPI |
| MS.gene65301 | MS.gene55900 | PPI |
| MS.gene65301 | MS.gene072954 | PPI |
| MS.gene65301 | MS.gene021632 | PPI |
| MS.gene65301 | MS.gene58835 | PPI |
| MS.gene65301 | MS.gene23792 | PPI |
| MS.gene65301 | MS.gene072952 | PPI |
| MS.gene65301 | MS.gene67884 | PPI |
| MS.gene65301 | MS.gene017692 | PPI |
| MS.gene65301 | MS.gene00063 | PPI |
| MS.gene65301 | MS.gene017693 | PPI |
| MS.gene65301 | MS.gene35086 | PPI |
| MS.gene65301 | MS.gene017542 | PPI |
| MS.gene65301 | MS.gene28739 | PPI |
| MS.gene65301 | MS.gene072963 | PPI |
| MS.gene65301 | MS.gene067143 | PPI |
| MS.gene65301 | MS.gene36424 | PPI |
| MS.gene65301 | MS.gene27222 | PPI |
| MS.gene65301 | MS.gene028366 | PPI |
| MS.gene65301 | MS.gene71482 | PPI |
| MS.gene65301 | MS.gene072956 | PPI |
| MS.gene65301 | MS.gene013970 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65301.t1 | MTR_5g023790 | 98.537 | 410 | 6 | 0 | 3 | 412 | 18 | 427 | 0.0 | 844 |
| MS.gene65301.t1 | MTR_5g023790 | 98.626 | 364 | 5 | 0 | 3 | 366 | 18 | 381 | 0.0 | 749 |
| MS.gene65301.t1 | MTR_5g023790 | 90.294 | 340 | 20 | 2 | 3 | 329 | 18 | 357 | 0.0 | 626 |
| MS.gene65301.t1 | MTR_8g074000 | 74.564 | 401 | 98 | 2 | 12 | 412 | 35 | 431 | 0.0 | 615 |
| MS.gene65301.t1 | MTR_5g088980 | 46.494 | 271 | 142 | 3 | 140 | 408 | 148 | 417 | 1.08e-78 | 249 |
| MS.gene65301.t1 | MTR_7g089080 | 46.763 | 278 | 137 | 3 | 140 | 409 | 182 | 456 | 3.72e-77 | 260 |
| MS.gene65301.t1 | MTR_1g011470 | 34.521 | 365 | 208 | 8 | 70 | 404 | 52 | 415 | 5.52e-60 | 201 |
| MS.gene65301.t1 | MTR_3g107970 | 41.961 | 255 | 141 | 3 | 157 | 404 | 213 | 467 | 4.45e-57 | 194 |
| MS.gene65301.t1 | MTR_3g088415 | 37.847 | 288 | 161 | 8 | 130 | 405 | 216 | 497 | 2.27e-56 | 193 |
| MS.gene65301.t1 | MTR_2g102520 | 41.975 | 243 | 132 | 5 | 131 | 365 | 189 | 430 | 7.26e-53 | 183 |
| MS.gene65301.t1 | MTR_3g088405 | 36.429 | 280 | 167 | 6 | 141 | 410 | 228 | 506 | 1.43e-51 | 181 |
| MS.gene65301.t1 | MTR_2g102550 | 37.413 | 286 | 167 | 5 | 122 | 396 | 129 | 413 | 9.65e-51 | 177 |
| MS.gene65301.t1 | MTR_3g088415 | 41.228 | 228 | 124 | 5 | 130 | 350 | 216 | 440 | 2.33e-50 | 176 |
| MS.gene65301.t1 | MTR_1g018680 | 35.769 | 260 | 158 | 4 | 150 | 400 | 84 | 343 | 5.37e-46 | 162 |
| MS.gene65301.t1 | MTR_3g102510 | 34.263 | 251 | 158 | 3 | 157 | 400 | 74 | 324 | 1.64e-43 | 155 |
| MS.gene65301.t1 | MTR_3g060770 | 39.648 | 227 | 126 | 5 | 155 | 374 | 30 | 252 | 4.52e-42 | 150 |
| MS.gene65301.t1 | MTR_3g102520 | 33.984 | 256 | 160 | 4 | 154 | 400 | 88 | 343 | 4.18e-41 | 149 |
| MS.gene65301.t1 | MTR_3g102560 | 34.728 | 239 | 142 | 4 | 155 | 384 | 62 | 295 | 8.34e-40 | 145 |
| MS.gene65301.t1 | MTR_3g102530 | 33.333 | 276 | 168 | 5 | 141 | 400 | 61 | 336 | 1.71e-39 | 145 |
| MS.gene65301.t1 | MTR_3g088415 | 43.114 | 167 | 93 | 2 | 138 | 303 | 222 | 387 | 3.45e-39 | 145 |
| MS.gene65301.t1 | MTR_3g061680 | 36.726 | 226 | 132 | 5 | 155 | 373 | 20 | 241 | 5.82e-37 | 136 |
| MS.gene65301.t1 | MTR_3g060820 | 36.283 | 226 | 133 | 5 | 155 | 373 | 20 | 241 | 6.35e-36 | 133 |
| MS.gene65301.t1 | MTR_3g060400 | 35.193 | 233 | 140 | 5 | 148 | 373 | 19 | 247 | 4.03e-35 | 131 |
| MS.gene65301.t1 | MTR_3g460990 | 35.193 | 233 | 140 | 5 | 148 | 373 | 19 | 247 | 4.03e-35 | 131 |
| MS.gene65301.t1 | MTR_3g102540 | 33.200 | 250 | 150 | 6 | 161 | 400 | 13 | 255 | 6.23e-35 | 130 |
| MS.gene65301.t1 | MTR_3g060410 | 38.071 | 197 | 115 | 3 | 185 | 374 | 131 | 327 | 6.76e-34 | 130 |
| MS.gene65301.t1 | MTR_6g045270 | 32.143 | 252 | 152 | 8 | 156 | 400 | 45 | 284 | 1.11e-26 | 109 |
| MS.gene65301.t1 | MTR_5g011900 | 30.638 | 235 | 142 | 5 | 110 | 329 | 13 | 241 | 1.74e-24 | 101 |
| MS.gene65301.t1 | MTR_1g032850 | 32.569 | 218 | 138 | 4 | 159 | 368 | 336 | 552 | 8.02e-18 | 85.9 |
| MS.gene65301.t1 | MTR_5g044040 | 46.753 | 77 | 41 | 0 | 211 | 287 | 7 | 83 | 5.67e-17 | 77.4 |
| MS.gene65301.t1 | MTR_2g005960 | 25.688 | 218 | 124 | 6 | 51 | 250 | 32 | 229 | 1.55e-13 | 70.1 |
| MS.gene65301.t1 | MTR_3g103080 | 22.374 | 219 | 158 | 4 | 184 | 393 | 61 | 276 | 9.34e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65301.t1 | AT1G20610 | 59.305 | 403 | 156 | 5 | 10 | 409 | 32 | 429 | 5.45e-170 | 483 |
| MS.gene65301.t1 | AT1G76310 | 59.524 | 420 | 148 | 9 | 3 | 409 | 20 | 430 | 3.47e-169 | 481 |
| MS.gene65301.t1 | AT1G76310 | 55.804 | 448 | 148 | 10 | 3 | 409 | 20 | 458 | 1.29e-162 | 465 |
| MS.gene65301.t1 | AT2G17620 | 59.662 | 414 | 141 | 8 | 7 | 409 | 25 | 423 | 8.32e-160 | 457 |
| MS.gene65301.t1 | AT4G35620 | 59.048 | 420 | 138 | 10 | 7 | 411 | 27 | 427 | 4.57e-150 | 432 |
| MS.gene65301.t1 | AT1G76310 | 58.090 | 377 | 136 | 9 | 3 | 366 | 20 | 387 | 3.91e-144 | 416 |
| MS.gene65301.t1 | AT4G35620 | 59.091 | 374 | 120 | 9 | 7 | 366 | 27 | 381 | 8.82e-131 | 381 |
| MS.gene65301.t1 | AT1G76310 | 56.918 | 318 | 115 | 9 | 3 | 307 | 20 | 328 | 5.26e-112 | 332 |
| MS.gene65301.t1 | AT3G11520 | 38.987 | 395 | 214 | 8 | 36 | 411 | 26 | 412 | 2.73e-86 | 269 |
| MS.gene65301.t1 | AT1G20590 | 70.175 | 171 | 51 | 0 | 217 | 387 | 65 | 235 | 4.73e-86 | 263 |
| MS.gene65301.t1 | AT5G06150 | 36.643 | 423 | 224 | 8 | 12 | 409 | 30 | 433 | 3.10e-85 | 267 |
| MS.gene65301.t1 | AT2G26760 | 46.183 | 262 | 138 | 3 | 136 | 395 | 109 | 369 | 1.25e-78 | 248 |
| MS.gene65301.t1 | AT1G16330 | 44.444 | 279 | 153 | 1 | 126 | 404 | 366 | 642 | 3.76e-78 | 254 |
| MS.gene65301.t1 | AT4G37490 | 44.718 | 284 | 150 | 4 | 132 | 409 | 140 | 422 | 6.34e-76 | 243 |
| MS.gene65301.t1 | AT3G11520 | 39.429 | 350 | 185 | 8 | 36 | 366 | 26 | 367 | 1.21e-75 | 240 |
| MS.gene65301.t1 | AT1G77390 | 39.405 | 269 | 155 | 4 | 140 | 401 | 162 | 429 | 1.47e-59 | 200 |
| MS.gene65301.t1 | AT5G25380 | 33.957 | 374 | 229 | 8 | 36 | 400 | 59 | 423 | 1.59e-58 | 197 |
| MS.gene65301.t1 | AT5G25380 | 33.957 | 374 | 229 | 8 | 36 | 400 | 59 | 423 | 1.59e-58 | 197 |
| MS.gene65301.t1 | AT5G25380 | 34.921 | 378 | 226 | 9 | 36 | 400 | 59 | 429 | 6.30e-58 | 196 |
| MS.gene65301.t1 | AT5G25380 | 33.875 | 369 | 226 | 8 | 36 | 395 | 59 | 418 | 2.08e-57 | 194 |
| MS.gene65301.t1 | AT5G11300 | 42.379 | 269 | 147 | 4 | 140 | 401 | 156 | 423 | 1.08e-56 | 192 |
| MS.gene65301.t1 | AT5G43080 | 37.548 | 261 | 160 | 3 | 142 | 400 | 73 | 332 | 1.82e-55 | 187 |
| MS.gene65301.t1 | AT5G06150 | 36.585 | 328 | 162 | 9 | 12 | 314 | 30 | 336 | 6.52e-55 | 185 |
| MS.gene65301.t1 | AT1G44110 | 37.050 | 278 | 167 | 4 | 131 | 401 | 169 | 445 | 1.21e-54 | 187 |
| MS.gene65301.t1 | AT1G47210 | 39.552 | 268 | 152 | 5 | 142 | 400 | 88 | 354 | 7.23e-54 | 183 |
| MS.gene65301.t1 | AT5G43080 | 36.842 | 266 | 160 | 4 | 142 | 400 | 73 | 337 | 3.43e-53 | 181 |
| MS.gene65301.t1 | AT1G15570 | 39.700 | 267 | 153 | 4 | 141 | 400 | 173 | 438 | 4.61e-53 | 183 |
| MS.gene65301.t1 | AT1G80370 | 39.700 | 267 | 153 | 4 | 141 | 400 | 182 | 447 | 4.77e-53 | 184 |
| MS.gene65301.t1 | AT5G11300 | 45.946 | 222 | 112 | 4 | 140 | 354 | 156 | 376 | 4.71e-52 | 180 |
| MS.gene65301.t1 | AT1G47220 | 39.925 | 268 | 151 | 5 | 142 | 400 | 42 | 308 | 4.81e-52 | 177 |
| MS.gene65301.t1 | AT1G47230 | 36.154 | 260 | 157 | 4 | 150 | 400 | 88 | 347 | 5.65e-48 | 168 |
| MS.gene65301.t1 | AT1G47230 | 36.015 | 261 | 157 | 5 | 150 | 400 | 88 | 348 | 2.72e-46 | 163 |
| MS.gene65301.t1 | AT1G34460 | 31.987 | 297 | 155 | 6 | 12 | 304 | 142 | 395 | 1.32e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 31.987 | 297 | 155 | 6 | 12 | 304 | 142 | 395 | 1.32e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 33.000 | 300 | 151 | 9 | 12 | 304 | 128 | 384 | 1.91e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 33.000 | 300 | 151 | 9 | 12 | 304 | 142 | 398 | 2.53e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 33.000 | 300 | 151 | 9 | 12 | 304 | 142 | 398 | 2.53e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 33.000 | 300 | 151 | 9 | 12 | 304 | 142 | 398 | 2.53e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 33.000 | 300 | 151 | 9 | 12 | 304 | 142 | 398 | 2.53e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 33.000 | 300 | 151 | 9 | 12 | 304 | 142 | 398 | 2.78e-37 | 142 |
| MS.gene65301.t1 | AT1G34460 | 33.000 | 300 | 151 | 9 | 12 | 304 | 142 | 398 | 3.07e-37 | 141 |
| MS.gene65301.t1 | AT1G14750 | 33.696 | 184 | 119 | 2 | 188 | 368 | 385 | 568 | 7.38e-21 | 95.1 |
| MS.gene65301.t1 | AT1G14750 | 33.696 | 184 | 119 | 2 | 188 | 368 | 385 | 568 | 8.34e-21 | 95.1 |
| MS.gene65301.t1 | AT1G14750 | 33.696 | 184 | 119 | 2 | 188 | 368 | 217 | 400 | 1.19e-20 | 93.6 |
| MS.gene65301.t1 | AT1G47210 | 44.762 | 105 | 54 | 3 | 142 | 243 | 88 | 191 | 1.32e-20 | 89.4 |
| MS.gene65301.t1 | AT1G14750 | 33.696 | 184 | 118 | 3 | 188 | 368 | 217 | 399 | 1.54e-19 | 90.5 |
Find 82 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGAATGCTCTAGTTTAA+TGG | 0.170801 | 5.2:-14652100 | MS.gene65301:CDS |
| CCATTTCCAGAACTTCTTTC+CGG | 0.210345 | 5.2:+14653227 | None:intergenic |
| TTTCATGAGAAGGTTCTTAA+AGG | 0.288446 | 5.2:-14652889 | MS.gene65301:CDS |
| GGGTGTGATTAATCAGAATT+TGG | 0.301953 | 5.2:-14655287 | MS.gene65301:CDS |
| AAATCAAGTTCAAATGGATT+TGG | 0.319295 | 5.2:-14654474 | MS.gene65301:CDS |
| TGGTTTAGTGGCAATGCTTT+TGG | 0.341737 | 5.2:-14653320 | MS.gene65301:CDS |
| CTGTGTTTCACCAAACTATA+TGG | 0.349277 | 5.2:-14653701 | MS.gene65301:CDS |
| CATTTCCAGAACTTCTTTCC+GGG | 0.354928 | 5.2:+14653228 | None:intergenic |
| GCTGGGACAGGGAAACTTAC+AGG | 0.367597 | 5.2:-14652060 | MS.gene65301:CDS |
| GCTTCAGTTGGTTGGTTTAG+TGG | 0.367934 | 5.2:-14653332 | MS.gene65301:CDS |
| TGAAAGGATGAGGGCTATAC+TGG | 0.375569 | 5.2:-14653659 | MS.gene65301:CDS |
| TTCTCCAGAAGAAAACTTGC+TGG | 0.385990 | 5.2:+14651985 | None:intergenic |
| AGTTGAGATGGAGGATATCA+TGG | 0.409043 | 5.2:-14654242 | MS.gene65301:CDS |
| TTGGCAAAATCAAGTTCAAA+TGG | 0.410685 | 5.2:-14654480 | MS.gene65301:CDS |
| TGCTCTAAAGCCATTGGCAC+TGG | 0.419967 | 5.2:+14654405 | None:intergenic |
| GCAAGAGGGTCATTTGCATC+AGG | 0.421294 | 5.2:+14654193 | None:intergenic |
| GGGGTGTCAATGTCCATAAC+AGG | 0.441867 | 5.2:+14654214 | None:intergenic |
| TCTGTTTGCTCTAAAGCCAT+TGG | 0.446717 | 5.2:+14654399 | None:intergenic |
| CTAGTGATGGGTCGATGAAC+CGG | 0.449551 | 5.2:+14655077 | None:intergenic |
| TGAGAAGAAACAAGCGGATC+CGG | 0.456269 | 5.2:-14655096 | MS.gene65301:CDS |
| CTTATAGGAGGAAGTTGAGA+TGG | 0.464867 | 5.2:-14654254 | MS.gene65301:intron |
| AATTGCTGTGCCATATAGTT+TGG | 0.468094 | 5.2:+14653691 | None:intergenic |
| TATCATGGAAGAGCCTGTTA+TGG | 0.468278 | 5.2:-14654227 | MS.gene65301:CDS |
| GGGTTAGATTCTAGAAAGGT+TGG | 0.473549 | 5.2:-14655328 | MS.gene65301:CDS |
| TTGACATTAATGAAAGGATG+AGG | 0.477955 | 5.2:-14653669 | MS.gene65301:CDS |
| GGCACTGGCTGATCCTCCAC+TGG | 0.480548 | 5.2:+14654420 | None:intergenic |
| GAGTTGATCTTCAGAGTAGT+TGG | 0.480770 | 5.2:+14652571 | None:intergenic |
| GTTGACTTTCACAAGAAGGC+TGG | 0.486106 | 5.2:-14652078 | MS.gene65301:CDS |
| TTTCACAAGAAGGCTGGGAC+AGG | 0.486235 | 5.2:-14652072 | MS.gene65301:CDS |
| ACAGCTCAATGCACTATGTA+TGG | 0.490108 | 5.2:-14652629 | MS.gene65301:CDS |
| CCGGAAAGAAGTTCTGGAAA+TGG | 0.494858 | 5.2:-14653227 | MS.gene65301:intron |
| GGGCAAAACAGAAGAGCATT+GGG | 0.497902 | 5.2:-14655307 | MS.gene65301:CDS |
| AGGAGGGTTAGATTCTAGAA+AGG | 0.500876 | 5.2:-14655332 | MS.gene65301:CDS |
| GGTTAGATTCTAGAAAGGTT+GGG | 0.502394 | 5.2:-14655327 | MS.gene65301:CDS |
| ATACACCCGGAAAGAAGTTC+TGG | 0.504153 | 5.2:-14653233 | MS.gene65301:CDS |
| ACTGGTTGACTGGCTTATTG+AGG | 0.508362 | 5.2:-14653641 | MS.gene65301:intron |
| TGGGCAAAACAGAAGAGCAT+TGG | 0.511695 | 5.2:-14655308 | MS.gene65301:CDS |
| AACTACCAAAAGGTCAAACT+TGG | 0.515338 | 5.2:-14654499 | MS.gene65301:CDS |
| AGAAAGAAGCTTCAGTTGGT+TGG | 0.515982 | 5.2:-14653340 | MS.gene65301:CDS |
| AATCAGAATTTGGTTGTGGA+AGG | 0.518311 | 5.2:-14655277 | MS.gene65301:CDS |
| ATCAATTCCTCACCTAGTGA+TGG | 0.523848 | 5.2:+14655064 | None:intergenic |
| CGATCTGATTCACTATGCAT+TGG | 0.527931 | 5.2:+14654375 | None:intergenic |
| AATGGTTGACTTTCACAAGA+AGG | 0.528684 | 5.2:-14652082 | MS.gene65301:CDS |
| GCAGCGGCAGCTAGTTGAGA+AGG | 0.533466 | 5.2:+14652659 | None:intergenic |
| TTGTTAACAACACAAGGATA+AGG | 0.536421 | 5.2:+14655250 | None:intergenic |
| ATAGGAGGAAGTTGAGATGG+AGG | 0.543444 | 5.2:-14654251 | MS.gene65301:intron |
| CGGTTCATCGACCCATCACT+AGG | 0.545956 | 5.2:-14655076 | MS.gene65301:intron |
| GAACCTTCTCATGAAAACAT+AGG | 0.546868 | 5.2:+14652896 | None:intergenic |
| GATTAATCAGAATTTGGTTG+TGG | 0.548543 | 5.2:-14655281 | MS.gene65301:CDS |
| ATCCTTGTGTTGTTAACAAG+AGG | 0.554542 | 5.2:-14655246 | MS.gene65301:CDS |
| TGAGGGCTATACTGGTTGAC+TGG | 0.555400 | 5.2:-14653651 | MS.gene65301:CDS |
| GGAGGATCAGCCAGTGCCAA+TGG | 0.555755 | 5.2:-14654415 | MS.gene65301:CDS |
| CTCTTACTACAGAAAAGTTG+AGG | 0.560855 | 5.2:-14654143 | MS.gene65301:intron |
| AGCAATTTGACATTAATGAA+AGG | 0.565905 | 5.2:-14653675 | MS.gene65301:CDS |
| TCCTTGTGTTGTTAACAAGA+GGG | 0.566377 | 5.2:-14655245 | MS.gene65301:CDS |
| TTGAATAGGGAACTACCAAA+AGG | 0.566910 | 5.2:-14654509 | MS.gene65301:intron |
| CAAGAGGGTCATTTGCATCA+GGG | 0.569803 | 5.2:+14654194 | None:intergenic |
| TTGACTTTCACAAGAAGGCT+GGG | 0.569949 | 5.2:-14652077 | MS.gene65301:CDS |
| GAAGTTTCAGTGCCTGTGGT+TGG | 0.581724 | 5.2:-14653283 | MS.gene65301:CDS |
| GGTAAGAAAGAAGCTTCAGT+TGG | 0.588907 | 5.2:-14653344 | MS.gene65301:CDS |
| CTCATGAAAACATAGGCTGT+CGG | 0.589074 | 5.2:+14652903 | None:intergenic |
| TCAATTCCTCACCTAGTGAT+GGG | 0.589190 | 5.2:+14655065 | None:intergenic |
| TGACATTAATGAAAGGATGA+GGG | 0.591362 | 5.2:-14653668 | MS.gene65301:CDS |
| GCATAGTGAATCAGATCGGA+TGG | 0.591834 | 5.2:-14654370 | MS.gene65301:intron |
| CATGAGAAGGTTCTTAAAGG+CGG | 0.594323 | 5.2:-14652886 | MS.gene65301:CDS |
| AAGAGGGTCATTTGCATCAG+GGG | 0.596917 | 5.2:+14654195 | None:intergenic |
| ATATATTCAGCAACTGCAAG+AGG | 0.601924 | 5.2:+14654178 | None:intergenic |
| GCCCTCTTGTTAACAACACA+AGG | 0.607827 | 5.2:+14655244 | None:intergenic |
| AGAATTAGATCTCCAACCAC+AGG | 0.618555 | 5.2:+14653271 | None:intergenic |
| CAATGCATAGTGAATCAGAT+CGG | 0.630746 | 5.2:-14654374 | MS.gene65301:CDS |
| TATCAGACAGAGCATACACC+CGG | 0.634548 | 5.2:-14653246 | MS.gene65301:CDS |
| AGTGGAGTAAGACATGTGAA+TGG | 0.637958 | 5.2:-14652598 | MS.gene65301:CDS |
| TTCACAAGAAGGCTGGGACA+GGG | 0.640634 | 5.2:-14652071 | MS.gene65301:CDS |
| TGAGGAAGTTTCAGTGCCTG+TGG | 0.654299 | 5.2:-14653287 | MS.gene65301:CDS |
| TATATTCAGCAACTGCAAGA+GGG | 0.656026 | 5.2:+14654179 | None:intergenic |
| GGAAACTTACAGGAGCACAT+AGG | 0.667527 | 5.2:-14652050 | MS.gene65301:CDS |
| TGATGAACACAAGCCAGTGG+AGG | 0.670864 | 5.2:-14654433 | MS.gene65301:CDS |
| GAAACAATGTCTCATGCATG+AGG | 0.677202 | 5.2:+14653410 | None:intergenic |
| CTATGTATGGTGTCAAACAG+TGG | 0.683237 | 5.2:-14652616 | MS.gene65301:CDS |
| TTGAGCTGTATAGACAGCAG+CGG | 0.686693 | 5.2:+14652643 | None:intergenic |
| TGATGATGAACACAAGCCAG+TGG | 0.720589 | 5.2:-14654436 | MS.gene65301:CDS |
| TGTTTGTGAGAAGAAACAAG+CGG | 0.747744 | 5.2:-14655102 | MS.gene65301:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAACTAAAATTTAAAAAA+AGG | + | chr5.2:14653538-14653557 | None:intergenic | 10.0% |
| !! | TATGATAAAGAAAAAAAAAA+TGG | + | chr5.2:14655022-14655041 | None:intergenic | 10.0% |
| !! | TATTAACTAATTAAATAAAC+AGG | + | chr5.2:14653499-14653518 | None:intergenic | 10.0% |
| !!! | TTTTGTTTTGAAATAATTAA+CGG | + | chr5.2:14652129-14652148 | None:intergenic | 10.0% |
| !! | AAAACAATAATTGAATGTAA+TGG | - | chr5.2:14653803-14653822 | MS.gene65301:intron | 15.0% |
| !! | AAAGATTGAAAATTTCAAAA+TGG | - | chr5.2:14652417-14652436 | MS.gene65301:intron | 15.0% |
| !! | AAGATTGAAAATTTCAAAAT+GGG | - | chr5.2:14652418-14652437 | MS.gene65301:intron | 15.0% |
| !! | ACTATATAAAAAAAAGGTTA+TGG | + | chr5.2:14655649-14655668 | None:intergenic | 15.0% |
| !!! | AAAATTCAAGAGTATAAATT+TGG | + | chr5.2:14654001-14654020 | None:intergenic | 15.0% |
| !!! | AATATCTTTGTTTTTTCTTA+TGG | + | chr5.2:14652854-14652873 | None:intergenic | 15.0% |
| !!! | ATTTGTTATTGAAATTTGAT+TGG | + | chr5.2:14654082-14654101 | None:intergenic | 15.0% |
| !!! | TTAATTGTTTTTGTGATAAT+AGG | - | chr5.2:14652477-14652496 | MS.gene65301:intron | 15.0% |
| !! | AGAAATTCAAATTACACTAA+AGG | + | chr5.2:14652820-14652839 | None:intergenic | 20.0% |
| !! | ATATAACAAAATGACATCAT+AGG | - | chr5.2:14655578-14655597 | MS.gene65301:intron | 20.0% |
| !! | ATTAATCCTATATTTAATCC+AGG | + | chr5.2:14654270-14654289 | None:intergenic | 20.0% |
| !! | GAAATTCAAATTACACTAAA+GGG | + | chr5.2:14652819-14652838 | None:intergenic | 20.0% |
| !! | GTATTTGTAATTAGTAACTA+TGG | + | chr5.2:14655055-14655074 | None:intergenic | 20.0% |
| !! | TAAAGAAAAAAAAAATGGCA+TGG | + | chr5.2:14655017-14655036 | None:intergenic | 20.0% |
| !! | TATAACAAAATGACATCATA+GGG | - | chr5.2:14655579-14655598 | MS.gene65301:intron | 20.0% |
| !! | TCTTGATTTACTGTTATATT+AGG | - | chr5.2:14653167-14653186 | MS.gene65301:intron | 20.0% |
| !! | TTTAGTGTAATTTGAATTTC+TGG | - | chr5.2:14652819-14652838 | MS.gene65301:intron | 20.0% |
| !! | TTTCAGAATTCCAATTAATA+TGG | - | chr5.2:14654047-14654066 | MS.gene65301:intron | 20.0% |
| !!! | AGGTTTGATAATGATTTTTA+TGG | - | chr5.2:14652371-14652390 | MS.gene65301:intron | 20.0% |
| !!! | ATAATGATTTTTATGGGATT+TGG | - | chr5.2:14652378-14652397 | MS.gene65301:intron | 20.0% |
| !!! | ATTTGTGTGTAAAATTTTGT+AGG | - | chr5.2:14654862-14654881 | MS.gene65301:intron | 20.0% |
| !!! | GGTTTGATAATGATTTTTAT+GGG | - | chr5.2:14652372-14652391 | MS.gene65301:intron | 20.0% |
| !!! | TAATGATTTTTATGGGATTT+GGG | - | chr5.2:14652379-14652398 | MS.gene65301:intron | 20.0% |
| ! | AAATGGCATGGAAATATATT+AGG | + | chr5.2:14655005-14655024 | None:intergenic | 25.0% |
| ! | AAGTAAGCATTATCCATATT+TGG | + | chr5.2:14654360-14654379 | None:intergenic | 25.0% |
| ! | AATGTAGCAAAATTTCACAA+AGG | + | chr5.2:14653253-14653272 | None:intergenic | 25.0% |
| ! | AATTCACAATCACAAAAAGA+AGG | + | chr5.2:14652645-14652664 | None:intergenic | 25.0% |
| ! | AGCAATTTGACATTAATGAA+AGG | - | chr5.2:14654154-14654173 | MS.gene65301:CDS | 25.0% |
| ! | AGTAAGCATTATCCATATTT+GGG | + | chr5.2:14654359-14654378 | None:intergenic | 25.0% |
| ! | ATCAAACCTTCAAAATTTGT+GGG | + | chr5.2:14652360-14652379 | None:intergenic | 25.0% |
| ! | ATTCACAATCACAAAAAGAA+GGG | + | chr5.2:14652644-14652663 | None:intergenic | 25.0% |
| ! | CACAAATGCTATAAATGTAA+AGG | + | chr5.2:14654660-14654679 | None:intergenic | 25.0% |
| ! | CATTCAAAATCTTAGTCAAA+AGG | + | chr5.2:14653289-14653308 | None:intergenic | 25.0% |
| ! | CATTTGAACTAAAATCCAAA+TGG | + | chr5.2:14653739-14653758 | None:intergenic | 25.0% |
| ! | CTTTACATTTATAGCATTTG+TGG | - | chr5.2:14654658-14654677 | MS.gene65301:intron | 25.0% |
| ! | GAAAGAATTGCCATATTAAT+TGG | + | chr5.2:14654060-14654079 | None:intergenic | 25.0% |
| ! | TATCAAACCTTCAAAATTTG+TGG | + | chr5.2:14652361-14652380 | None:intergenic | 25.0% |
| ! | TCTAAATCTGAATAATCCAA+CGG | - | chr5.2:14652089-14652108 | MS.gene65301:CDS | 25.0% |
| ! | TGATTTACTGTTATATTAGG+AGG | - | chr5.2:14653170-14653189 | MS.gene65301:intron | 25.0% |
| ! | TTGAGATAAGTGTTTGAATT+TGG | - | chr5.2:14652872-14652891 | MS.gene65301:CDS | 25.0% |
| !! | AAATCAAGTTCAAATGGATT+TGG | - | chr5.2:14653355-14653374 | MS.gene65301:CDS | 25.0% |
| !! | AAGTTTTGCTAAAATGATGA+TGG | - | chr5.2:14653139-14653158 | MS.gene65301:intron | 25.0% |
| !! | CAATCTTATAGACAGATTTT+TGG | - | chr5.2:14654449-14654468 | MS.gene65301:CDS | 25.0% |
| !! | GAATTGATGATTTAAGTTTC+TGG | - | chr5.2:14652780-14652799 | MS.gene65301:intron | 25.0% |
| !! | TGACTAAGATTTTGAATGTT+GGG | - | chr5.2:14653291-14653310 | MS.gene65301:CDS | 25.0% |
| !! | TGTAATTTGAATTTCTGGAT+TGG | - | chr5.2:14652824-14652843 | MS.gene65301:intron | 25.0% |
| !! | TTGACTAAGATTTTGAATGT+TGG | - | chr5.2:14653290-14653309 | MS.gene65301:CDS | 25.0% |
| !! | TTGTTTTCTTTTGTGGTTTT+TGG | - | chr5.2:14652664-14652683 | MS.gene65301:CDS | 25.0% |
| !!! | ATTGTTTTTGTGATAATAGG+AGG | - | chr5.2:14652480-14652499 | MS.gene65301:intron | 25.0% |
| !!! | CAATATTTTAGAACACCATT+TGG | - | chr5.2:14653721-14653740 | MS.gene65301:intron | 25.0% |
| !!! | CATTTGGATTTTAGTTCAAA+TGG | - | chr5.2:14653737-14653756 | MS.gene65301:intron | 25.0% |
| !!! | TCATCGGAATTTTTAGAAAA+AGG | + | chr5.2:14654830-14654849 | None:intergenic | 25.0% |
| !!! | TGGTTTTTGGTTTTGATTTA+TGG | - | chr5.2:14652677-14652696 | MS.gene65301:CDS | 25.0% |
| !!! | TGTGAATTTGTTTTCTTTTG+TGG | - | chr5.2:14652657-14652676 | MS.gene65301:CDS | 25.0% |
| !!! | TTGTTTTTGTGATAATAGGA+GGG | - | chr5.2:14652481-14652500 | MS.gene65301:intron | 25.0% |
| AAATCTCAGTTACTTGTCAT+CGG | + | chr5.2:14654846-14654865 | None:intergenic | 30.0% | |
| AAATGCTTCCTTTGACATTA+GGG | + | chr5.2:14653924-14653943 | None:intergenic | 30.0% | |
| AACACAACCCACAAAAAAAA+TGG | + | chr5.2:14652276-14652295 | None:intergenic | 30.0% | |
| AATCCTATATTTAATCCAGG+AGG | + | chr5.2:14654267-14654286 | None:intergenic | 30.0% | |
| ATGCTACATAGTTTCTGATT+TGG | + | chr5.2:14652910-14652929 | None:intergenic | 30.0% | |
| CTACTGCAATATAAAGGTTT+AGG | + | chr5.2:14654801-14654820 | None:intergenic | 30.0% | |
| GATTAATCAGAATTTGGTTG+TGG | - | chr5.2:14652548-14652567 | MS.gene65301:intron | 30.0% | |
| GTAAGCATTATCCATATTTG+GGG | + | chr5.2:14654358-14654377 | None:intergenic | 30.0% | |
| TAAATGCTTCCTTTGACATT+AGG | + | chr5.2:14653925-14653944 | None:intergenic | 30.0% | |
| TAAGCATTATCCATATTTGG+GGG | + | chr5.2:14654357-14654376 | None:intergenic | 30.0% | |
| TCAAACCTTCAAAATTTGTG+GGG | + | chr5.2:14652359-14652378 | None:intergenic | 30.0% | |
| TGACATTAATGAAAGGATGA+GGG | - | chr5.2:14654161-14654180 | MS.gene65301:CDS | 30.0% | |
| TTCTGTCATAAGGAGAATAA+CGG | + | chr5.2:14652025-14652044 | None:intergenic | 30.0% | |
| TTGACATTAATGAAAGGATG+AGG | - | chr5.2:14654160-14654179 | MS.gene65301:CDS | 30.0% | |
| TTGGCAAAATCAAGTTCAAA+TGG | - | chr5.2:14653349-14653368 | MS.gene65301:CDS | 30.0% | |
| TTGTTAACAACACAAGGATA+AGG | + | chr5.2:14652582-14652601 | None:intergenic | 30.0% | |
| TTTCATGAGAAGGTTCTTAA+AGG | - | chr5.2:14654940-14654959 | MS.gene65301:intron | 30.0% | |
| ! | AGTTGTTGACTGCAAATAAT+TGG | - | chr5.2:14653551-14653570 | MS.gene65301:intron | 30.0% |
| ! | ATTTAATTTCCCCCCAAATA+TGG | - | chr5.2:14654344-14654363 | MS.gene65301:intron | 30.0% |
| ! | CAAGTCAATAGCATTTTTCA+AGG | + | chr5.2:14654244-14654263 | None:intergenic | 30.0% |
| ! | GAAGAAAATGAAGTTTTCTG+AGG | - | chr5.2:14652314-14652333 | MS.gene65301:intron | 30.0% |
| ! | GACTAAGATTTTGAATGTTG+GGG | - | chr5.2:14653292-14653311 | MS.gene65301:CDS | 30.0% |
| ! | GCATTGACAATTCAGATTAT+TGG | - | chr5.2:14652926-14652945 | MS.gene65301:CDS | 30.0% |
| ! | GTGTAAAATTTTGTAGGAGA+AGG | - | chr5.2:14654868-14654887 | MS.gene65301:intron | 30.0% |
| ! | TTTAACCACATCTGATAATG+TGG | + | chr5.2:14652981-14653000 | None:intergenic | 30.0% |
| !! | CAAATAATTGGTCTTATAGG+AGG | - | chr5.2:14653563-14653582 | MS.gene65301:intron | 30.0% |
| !! | CTGCAAATAATTGGTCTTAT+AGG | - | chr5.2:14653560-14653579 | MS.gene65301:intron | 30.0% |
| !! | GATGATTTAAGTTTCTGGTT+TGG | - | chr5.2:14652785-14652804 | MS.gene65301:intron | 30.0% |
| !! | TCATTTTAGCAAAACTTGCA+TGG | + | chr5.2:14653136-14653155 | None:intergenic | 30.0% |
| !!! | AGGATCTTCCATTTTTTTTG+TGG | - | chr5.2:14652265-14652284 | MS.gene65301:intron | 30.0% |
| !!! | GGATCTTCCATTTTTTTTGT+GGG | - | chr5.2:14652266-14652285 | MS.gene65301:intron | 30.0% |
| !!! | GGTTTTGATTTATGGTTTGT+GGG | - | chr5.2:14652685-14652704 | MS.gene65301:CDS | 30.0% |
| !!! | TGGTTTTGATTTATGGTTTG+TGG | - | chr5.2:14652684-14652703 | MS.gene65301:CDS | 30.0% |
| AAAACTATGCGCAATTGTGT+TGG | - | chr5.2:14655351-14655370 | MS.gene65301:intron | 35.0% | |
| AACGGTAATATGACATGTGA+TGG | + | chr5.2:14652007-14652026 | None:intergenic | 35.0% | |
| AACTACCAAAAGGTCAAACT+TGG | - | chr5.2:14653330-14653349 | MS.gene65301:CDS | 35.0% | |
| AAGAGAGTGAAACAACGTTT+GGG | + | chr5.2:14652180-14652199 | None:intergenic | 35.0% | |
| AAGCATTATCCATATTTGGG+GGG | + | chr5.2:14654356-14654375 | None:intergenic | 35.0% | |
| AATCAGAATTTGGTTGTGGA+AGG | - | chr5.2:14652552-14652571 | MS.gene65301:intron | 35.0% | |
| AATTGCTGTGCCATATAGTT+TGG | + | chr5.2:14654141-14654160 | None:intergenic | 35.0% | |
| AATTTGTCATGCACCTGAAA+AGG | + | chr5.2:14654396-14654415 | None:intergenic | 35.0% | |
| ACCACACTAAAATTTGAAGG+TGG | + | chr5.2:14653876-14653895 | None:intergenic | 35.0% | |
| ATATATTCAGCAACTGCAAG+AGG | + | chr5.2:14653654-14653673 | None:intergenic | 35.0% | |
| ATGTTGGGGTCAATTTGAAT+AGG | - | chr5.2:14653306-14653325 | MS.gene65301:CDS | 35.0% | |
| ATTTGTCATGCACCTGAAAA+GGG | + | chr5.2:14654395-14654414 | None:intergenic | 35.0% | |
| CAATGCATAGTGAATCAGAT+CGG | - | chr5.2:14653455-14653474 | MS.gene65301:intron | 35.0% | |
| CACAAAAACATCTAATGCTG+AGG | - | chr5.2:14653213-14653232 | MS.gene65301:intron | 35.0% | |
| CAGAAAAGTTGAGGTACATT+TGG | - | chr5.2:14653695-14653714 | MS.gene65301:CDS | 35.0% | |
| CTAAAATTTGAAGGTGGATG+TGG | + | chr5.2:14653870-14653889 | None:intergenic | 35.0% | |
| CTCTTACTACAGAAAAGTTG+AGG | - | chr5.2:14653686-14653705 | MS.gene65301:CDS | 35.0% | |
| CTGTGTTTCACCAAACTATA+TGG | - | chr5.2:14654128-14654147 | MS.gene65301:intron | 35.0% | |
| GAACCTTCTCATGAAAACAT+AGG | + | chr5.2:14654936-14654955 | None:intergenic | 35.0% | |
| GAATAAGCCTTCGATTTAGT+TGG | + | chr5.2:14655319-14655338 | None:intergenic | 35.0% | |
| GCAACCACACTAAAATTTGA+AGG | + | chr5.2:14653879-14653898 | None:intergenic | 35.0% | |
| GCATGAAAATGAAGATCCTA+TGG | + | chr5.2:14652233-14652252 | None:intergenic | 35.0% | |
| GGAAGATCCTAGAAGAATAA+GGG | + | chr5.2:14652255-14652274 | None:intergenic | 35.0% | |
| GGGTGTGATTAATCAGAATT+TGG | - | chr5.2:14652542-14652561 | MS.gene65301:intron | 35.0% | |
| GGTGACATTGAAAATCTTTG+TGG | - | chr5.2:14654737-14654756 | MS.gene65301:intron | 35.0% | |
| GTATCTACATCTACATGTCA+CGG | - | chr5.2:14653039-14653058 | MS.gene65301:intron | 35.0% | |
| GTGACATGTAGATGTAGATA+CGG | + | chr5.2:14653040-14653059 | None:intergenic | 35.0% | |
| TATATTCAGCAACTGCAAGA+GGG | + | chr5.2:14653653-14653672 | None:intergenic | 35.0% | |
| TCAAGGTATAGTGATTCAGA+AGG | + | chr5.2:14654227-14654246 | None:intergenic | 35.0% | |
| TGGAAGATCCTAGAAGAATA+AGG | + | chr5.2:14652256-14652275 | None:intergenic | 35.0% | |
| TGTTGGGGTCAATTTGAATA+GGG | - | chr5.2:14653307-14653326 | MS.gene65301:CDS | 35.0% | |
| TGTTTGTGAGAAGAAACAAG+CGG | - | chr5.2:14652727-14652746 | MS.gene65301:CDS | 35.0% | |
| TTGAATAGGGAACTACCAAA+AGG | - | chr5.2:14653320-14653339 | MS.gene65301:CDS | 35.0% | |
| TTGCCTCCTGGATTAAATAT+AGG | - | chr5.2:14654261-14654280 | MS.gene65301:intron | 35.0% | |
| TTTCATGCCCTTATTCTTCT+AGG | - | chr5.2:14652245-14652264 | MS.gene65301:intron | 35.0% | |
| ! | AACAACCCCACAAATTTTGA+AGG | - | chr5.2:14652351-14652370 | MS.gene65301:intron | 35.0% |
| ! | AATGGTTGACTTTCACAAGA+AGG | - | chr5.2:14655747-14655766 | MS.gene65301:intron | 35.0% |
| ! | AATTTTGTAGGAGAAGGTGA+TGG | - | chr5.2:14654874-14654893 | MS.gene65301:intron | 35.0% |
| ! | ATATGACATGTGATGGAAAG+AGG | + | chr5.2:14652000-14652019 | None:intergenic | 35.0% |
| ! | ATCCTTGTGTTGTTAACAAG+AGG | - | chr5.2:14652583-14652602 | MS.gene65301:CDS | 35.0% |
| ! | CAGAGAATGCTCTAGTTTAA+TGG | - | chr5.2:14655729-14655748 | MS.gene65301:intron | 35.0% |
| ! | GGTTAGATTCTAGAAAGGTT+GGG | - | chr5.2:14652502-14652521 | MS.gene65301:intron | 35.0% |
| ! | TCCTTGTGTTGTTAACAAGA+GGG | - | chr5.2:14652584-14652603 | MS.gene65301:CDS | 35.0% |
| ! | TCTAGTTCCAACTAAATCGA+AGG | - | chr5.2:14655309-14655328 | MS.gene65301:CDS | 35.0% |
| ! | TTTTGCCAAGTTTGACCTTT+TGG | + | chr5.2:14653338-14653357 | None:intergenic | 35.0% |
| !! | ATTTTTGGAAAAGCAGTCTG+TGG | - | chr5.2:14654464-14654483 | MS.gene65301:CDS | 35.0% |
| !! | TCCACCTTCAAATTTTAGTG+TGG | - | chr5.2:14653872-14653891 | MS.gene65301:intron | 35.0% |
| AACACATGTCAGTGTGACAA+TGG | + | chr5.2:14653835-14653854 | None:intergenic | 40.0% | |
| ACAGCTCAATGCACTATGTA+TGG | - | chr5.2:14655200-14655219 | MS.gene65301:intron | 40.0% | |
| AGAAAGAAGCTTCAGTTGGT+TGG | - | chr5.2:14654489-14654508 | MS.gene65301:CDS | 40.0% | |
| AGAATTAGATCTCCAACCAC+AGG | + | chr5.2:14654561-14654580 | None:intergenic | 40.0% | |
| AGAGAGTGAAACAACGTTTG+GGG | + | chr5.2:14652179-14652198 | None:intergenic | 40.0% | |
| AGTGGAGTAAGACATGTGAA+TGG | - | chr5.2:14655231-14655250 | MS.gene65301:intron | 40.0% | |
| AGTTGAGATGGAGGATATCA+TGG | - | chr5.2:14653587-14653606 | MS.gene65301:intron | 40.0% | |
| ATCAATTCCTCACCTAGTGA+TGG | + | chr5.2:14652768-14652787 | None:intergenic | 40.0% | |
| CATGAGAAGGTTCTTAAAGG+CGG | - | chr5.2:14654943-14654962 | MS.gene65301:intron | 40.0% | |
| CATTTCCAGAACTTCTTTCC+GGG | + | chr5.2:14654604-14654623 | None:intergenic | 40.0% | |
| CCATTTCCAGAACTTCTTTC+CGG | + | chr5.2:14654605-14654624 | None:intergenic | 40.0% | |
| CGATCTGATTCACTATGCAT+TGG | + | chr5.2:14653457-14653476 | None:intergenic | 40.0% | |
| CTCATGAAAACATAGGCTGT+CGG | + | chr5.2:14654929-14654948 | None:intergenic | 40.0% | |
| CTTATAGGAGGAAGTTGAGA+TGG | - | chr5.2:14653575-14653594 | MS.gene65301:intron | 40.0% | |
| GAAACAATGTCTCATGCATG+AGG | + | chr5.2:14654422-14654441 | None:intergenic | 40.0% | |
| GAAGAGAGTGAAACAACGTT+TGG | + | chr5.2:14652181-14652200 | None:intergenic | 40.0% | |
| GAGATCAAAAGACTATGCGT+CGG | - | chr5.2:14655502-14655521 | MS.gene65301:intron | 40.0% | |
| GGTAAGAAAGAAGCTTCAGT+TGG | - | chr5.2:14654485-14654504 | MS.gene65301:CDS | 40.0% | |
| TAGTACGCTGTTCTGTCATA+AGG | + | chr5.2:14652035-14652054 | None:intergenic | 40.0% | |
| TATCATGGAAGAGCCTGTTA+TGG | - | chr5.2:14653602-14653621 | MS.gene65301:intron | 40.0% | |
| TCAATTCCTCACCTAGTGAT+GGG | + | chr5.2:14652767-14652786 | None:intergenic | 40.0% | |
| TCTGCGCTACTGCAATATAA+AGG | + | chr5.2:14654807-14654826 | None:intergenic | 40.0% | |
| TTCTCCAGAAGAAAACTTGC+TGG | + | chr5.2:14655847-14655866 | None:intergenic | 40.0% | |
| TTGACTTTCACAAGAAGGCT+GGG | - | chr5.2:14655752-14655771 | MS.gene65301:intron | 40.0% | |
| ! | ACCTTGGTTGTGTTATTGAG+TGG | + | chr5.2:14654686-14654705 | None:intergenic | 40.0% |
| ! | AGGAGGGTTAGATTCTAGAA+AGG | - | chr5.2:14652497-14652516 | MS.gene65301:intron | 40.0% |
| ! | CAGCCTATGTTTTCATGAGA+AGG | - | chr5.2:14654930-14654949 | MS.gene65301:intron | 40.0% |
| ! | CTATGTATGGTGTCAAACAG+TGG | - | chr5.2:14655213-14655232 | MS.gene65301:intron | 40.0% |
| ! | GAGTTGATCTTCAGAGTAGT+TGG | + | chr5.2:14655261-14655280 | None:intergenic | 40.0% |
| ! | GGGTTAGATTCTAGAAAGGT+TGG | - | chr5.2:14652501-14652520 | MS.gene65301:intron | 40.0% |
| ! | GTCACACTGACATGTGTTTT+TGG | - | chr5.2:14653837-14653856 | MS.gene65301:intron | 40.0% |
| ! | GTTTTGCATGAACCCTTTTC+AGG | - | chr5.2:14654380-14654399 | MS.gene65301:CDS | 40.0% |
| ! | TCACTGTTTCTCTCTTCCAT+AGG | - | chr5.2:14652214-14652233 | MS.gene65301:intron | 40.0% |
| ! | TGAACCAGCAAGTTTTCTTC+TGG | - | chr5.2:14655840-14655859 | MS.gene65301:intron | 40.0% |
| ! | TGGTTTAGTGGCAATGCTTT+TGG | - | chr5.2:14654509-14654528 | MS.gene65301:intron | 40.0% |
| !! | TCTGTTTGCTCTAAAGCCAT+TGG | + | chr5.2:14653433-14653452 | None:intergenic | 40.0% |
| !!! | GGACTGCAGTTTTAAAACCT+TGG | + | chr5.2:14654702-14654721 | None:intergenic | 40.0% |
| AAGAGGGTCATTTGCATCAG+GGG | + | chr5.2:14653637-14653656 | None:intergenic | 45.0% | |
| ATACACCCGGAAAGAAGTTC+TGG | - | chr5.2:14654596-14654615 | MS.gene65301:intron | 45.0% | |
| ATAGGAGGAAGTTGAGATGG+AGG | - | chr5.2:14653578-14653597 | MS.gene65301:intron | 45.0% | |
| ATTTGAAGGTGGATGTGGAC+AGG | + | chr5.2:14653865-14653884 | None:intergenic | 45.0% | |
| CAAGAGGGTCATTTGCATCA+GGG | + | chr5.2:14653638-14653657 | None:intergenic | 45.0% | |
| GAGAGTGAAACAACGTTTGG+GGG | + | chr5.2:14652178-14652197 | None:intergenic | 45.0% | |
| GCATAGTGAATCAGATCGGA+TGG | - | chr5.2:14653459-14653478 | MS.gene65301:intron | 45.0% | |
| GCCACTCAATAACACAACCA+AGG | - | chr5.2:14654682-14654701 | MS.gene65301:intron | 45.0% | |
| GCCCTCTTGTTAACAACACA+AGG | + | chr5.2:14652588-14652607 | None:intergenic | 45.0% | |
| TATCAGACAGAGCATACACC+CGG | - | chr5.2:14654583-14654602 | MS.gene65301:intron | 45.0% | |
| TGAAAGGATGAGGGCTATAC+TGG | - | chr5.2:14654170-14654189 | MS.gene65301:CDS | 45.0% | |
| TGAGAAGAAACAAGCGGATC+CGG | - | chr5.2:14652733-14652752 | MS.gene65301:intron | 45.0% | |
| TGGTTGAGCCCTAATGTCAA+AGG | - | chr5.2:14653913-14653932 | MS.gene65301:intron | 45.0% | |
| TTGAGCTGTATAGACAGCAG+CGG | + | chr5.2:14655189-14655208 | None:intergenic | 45.0% | |
| TTTGTCTGTGGTGAACACAG+AGG | + | chr5.2:14652153-14652172 | None:intergenic | 45.0% | |
| ! | ATGGTTTGTGGGTGTATCAC+AGG | - | chr5.2:14652696-14652715 | MS.gene65301:CDS | 45.0% |
| ! | CACATCTGATAATGTGGCGT+CGG | + | chr5.2:14652975-14652994 | None:intergenic | 45.0% |
| ! | GCTTTTGGCATGCAAGTATG+AGG | - | chr5.2:14654524-14654543 | MS.gene65301:intron | 45.0% |
| ! | GGAAACTTACAGGAGCACAT+AGG | - | chr5.2:14655779-14655798 | MS.gene65301:intron | 45.0% |
| ! | GTTGACTTTCACAAGAAGGC+TGG | - | chr5.2:14655751-14655770 | MS.gene65301:intron | 45.0% |
| ! | TAGCAGCTCAAGCTGTTTCA+TGG | + | chr5.2:14655096-14655115 | None:intergenic | 45.0% |
| ! | TGATGATGAACACAAGCCAG+TGG | - | chr5.2:14653393-14653412 | MS.gene65301:CDS | 45.0% |
| ! | TGGGCAAAACAGAAGAGCAT+TGG | - | chr5.2:14652521-14652540 | MS.gene65301:intron | 45.0% |
| !! | AATGCTATTGACTTGCCTCC+TGG | - | chr5.2:14654249-14654268 | MS.gene65301:CDS | 45.0% |
| !! | ACTGGTTGACTGGCTTATTG+AGG | - | chr5.2:14654188-14654207 | MS.gene65301:CDS | 45.0% |
| !! | CCGGAAAGAAGTTCTGGAAA+TGG | - | chr5.2:14654602-14654621 | MS.gene65301:intron | 45.0% |
| !! | GCTTCAGTTGGTTGGTTTAG+TGG | - | chr5.2:14654497-14654516 | MS.gene65301:CDS | 45.0% |
| !! | GGGCAAAACAGAAGAGCATT+GGG | - | chr5.2:14652522-14652541 | MS.gene65301:intron | 45.0% |
| !! | ATAATAACTATATAAAAAAA+AGG | + | chr5.2:14655655-14655674 | None:intergenic | 5.0% |
| ACATTAGGGCTCAACCAGAG+CGG | + | chr5.2:14653910-14653929 | None:intergenic | 50.0% | |
| CAGTCCTCTTGCAGTTTCTG+TGG | - | chr5.2:14654716-14654735 | MS.gene65301:intron | 50.0% | |
| CGACGCCACATTATCAGATG+TGG | - | chr5.2:14652973-14652992 | MS.gene65301:intron | 50.0% | |
| GAAGTTTCAGTGCCTGTGGT+TGG | - | chr5.2:14654546-14654565 | MS.gene65301:intron | 50.0% | |
| GCAAGAGGGTCATTTGCATC+AGG | + | chr5.2:14653639-14653658 | None:intergenic | 50.0% | |
| GGTTGCTACATATACCGCTC+TGG | - | chr5.2:14653893-14653912 | MS.gene65301:intron | 50.0% | |
| GTCACCACAGAAACTGCAAG+AGG | + | chr5.2:14654723-14654742 | None:intergenic | 50.0% | |
| TGAGGAAGTTTCAGTGCCTG+TGG | - | chr5.2:14654542-14654561 | MS.gene65301:intron | 50.0% | |
| TGATGAACACAAGCCAGTGG+AGG | - | chr5.2:14653396-14653415 | MS.gene65301:CDS | 50.0% | |
| TTCACAAGAAGGCTGGGACA+GGG | - | chr5.2:14655758-14655777 | MS.gene65301:intron | 50.0% | |
| TTTCACAAGAAGGCTGGGAC+AGG | - | chr5.2:14655757-14655776 | MS.gene65301:intron | 50.0% | |
| ! | GCTCAAGCTGTTTCATGGTG+AGG | + | chr5.2:14655091-14655110 | None:intergenic | 50.0% |
| ! | GGCTAGTCATTTGAGACCGT+TGG | + | chr5.2:14652108-14652127 | None:intergenic | 50.0% |
| ! | GGGGTGTCAATGTCCATAAC+AGG | + | chr5.2:14653618-14653637 | None:intergenic | 50.0% |
| ! | TGAGGGCTATACTGGTTGAC+TGG | - | chr5.2:14654178-14654197 | MS.gene65301:CDS | 50.0% |
| !! | CGTTTGGGGGTATTTGTCTG+TGG | + | chr5.2:14652165-14652184 | None:intergenic | 50.0% |
| !! | CTAGTGATGGGTCGATGAAC+CGG | + | chr5.2:14652755-14652774 | None:intergenic | 50.0% |
| !! | TGCTCTAAAGCCATTGGCAC+TGG | + | chr5.2:14653427-14653446 | None:intergenic | 50.0% |
| CACGGTGTCTCTGTCATGTC+AGG | - | chr5.2:14653057-14653076 | MS.gene65301:intron | 55.0% | |
| CATCGACCCATCACTAGGTG+AGG | - | chr5.2:14652758-14652777 | MS.gene65301:intron | 55.0% | |
| CGGTTCATCGACCCATCACT+AGG | - | chr5.2:14652753-14652772 | MS.gene65301:intron | 55.0% | |
| GCTGGGACAGGGAAACTTAC+AGG | - | chr5.2:14655769-14655788 | MS.gene65301:intron | 55.0% | |
| GCAGCGGCAGCTAGTTGAGA+AGG | + | chr5.2:14655173-14655192 | None:intergenic | 60.0% | |
| GGAGGATCAGCCAGTGCCAA+TGG | - | chr5.2:14653414-14653433 | MS.gene65301:CDS | 60.0% | |
| !! | GGCACTGGCTGATCCTCCAC+TGG | + | chr5.2:14653412-14653431 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 14651975 | 14655876 | 14651975 | ID=MS.gene65301 |
| chr5.2 | mRNA | 14651975 | 14655876 | 14651975 | ID=MS.gene65301.t1;Parent=MS.gene65301 |
| chr5.2 | exon | 14655870 | 14655876 | 14655870 | ID=MS.gene65301.t1.exon1;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14655870 | 14655876 | 14655870 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14655235 | 14655352 | 14655235 | ID=MS.gene65301.t1.exon2;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14655235 | 14655352 | 14655235 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14655077 | 14655133 | 14655077 | ID=MS.gene65301.t1.exon3;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14655077 | 14655133 | 14655077 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14654617 | 14654662 | 14654617 | ID=MS.gene65301.t1.exon4;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14654617 | 14654662 | 14654617 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14654371 | 14654523 | 14654371 | ID=MS.gene65301.t1.exon5;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14654371 | 14654523 | 14654371 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14654144 | 14654269 | 14654144 | ID=MS.gene65301.t1.exon6;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14654144 | 14654269 | 14654144 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14653642 | 14653731 | 14653642 | ID=MS.gene65301.t1.exon7;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14653642 | 14653731 | 14653642 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14653228 | 14653449 | 14653228 | ID=MS.gene65301.t1.exon8;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14653228 | 14653449 | 14653228 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14652869 | 14652967 | 14652869 | ID=MS.gene65301.t1.exon9;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14652869 | 14652967 | 14652869 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14652569 | 14652747 | 14652569 | ID=MS.gene65301.t1.exon10;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14652569 | 14652747 | 14652569 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| chr5.2 | exon | 14651975 | 14652119 | 14651975 | ID=MS.gene65301.t1.exon11;Parent=MS.gene65301.t1 |
| chr5.2 | CDS | 14651975 | 14652119 | 14651975 | ID=cds.MS.gene65301.t1;Parent=MS.gene65301.t1 |
| Gene Sequence |
| Protein sequence |
