AlfalfaGEDB | MS.gene67555

M. sativa cultivar XinJiangDaYe / MS.gene67555

KEGG: K21777
GO: GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0110165
PFAM: PF00134.26 PF02984.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67555.t1	CAA55272.1	99.5	411	2	0	2	412	18	428	4.90E-215	756.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67555.t1	P46277	99.0	411	4	0	2	412	18	428	8.4e-216	750.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67555.t1	Q40337	99.5	411	2	0	2	412	18	428	3.5e-215	756.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049251	MS.gene67555	0.824265	8.86E-54	-1.69E-46
MS.gene049596	MS.gene67555	0.810054	1.39E-50	-1.69E-46
MS.gene049844	MS.gene67555	0.806802	6.89E-50	-1.69E-46
MS.gene049989	MS.gene67555	0.852803	3.63E-61	-1.69E-46
MS.gene050297	MS.gene67555	0.842776	2.10E-58	-1.69E-46
MS.gene050875	MS.gene67555	0.820026	8.53E-53	-1.69E-46
MS.gene05124	MS.gene67555	0.832537	8.93E-56	-1.69E-46
MS.gene051742	MS.gene67555	0.816483	5.40E-52	-1.69E-46
MS.gene051816	MS.gene67555	0.827149	1.83E-54	-1.69E-46
MS.gene051896	MS.gene67555	0.823505	1.34E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene017542	MS.gene67555	PPI
MS.gene35086	MS.gene67555	PPI
MS.gene67555	MS.gene017693	PPI
MS.gene67555	MS.gene28739	PPI
MS.gene67555	MS.gene072963	PPI
MS.gene67555	MS.gene067143	PPI
MS.gene67555	MS.gene36424	PPI
MS.gene67555	MS.gene27222	PPI
MS.gene67555	MS.gene028366	PPI
MS.gene67555	MS.gene71482	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67555.t1	MTR_5g023790	98.537	410	6	0	2	411	18	427	0.0	844
MS.gene67555.t1	MTR_5g023790	98.626	364	5	0	2	365	18	381	0.0	749
MS.gene67555.t1	MTR_5g023790	90.294	340	20	2	2	328	18	357	0.0	626
MS.gene67555.t1	MTR_8g074000	74.564	401	98	2	11	411	35	431	0.0	615
MS.gene67555.t1	MTR_5g088980	46.494	271	142	3	139	407	148	417	1.04e-78	249
MS.gene67555.t1	MTR_7g089080	46.763	278	137	3	139	408	182	456	3.23e-77	260
MS.gene67555.t1	MTR_1g011470	34.521	365	208	8	69	403	52	415	4.73e-60	201
MS.gene67555.t1	MTR_3g107970	41.961	255	141	3	156	403	213	467	5.12e-57	194
MS.gene67555.t1	MTR_3g088415	37.847	288	161	8	129	404	216	497	2.12e-56	193
MS.gene67555.t1	MTR_2g102520	41.975	243	132	5	130	364	189	430	7.61e-53	183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67555.t1	AT1G20610	59.305	403	156	5	9	408	32	429	6.19e-170	483
MS.gene67555.t1	AT1G76310	59.524	420	148	9	2	408	20	430	2.00e-169	481
MS.gene67555.t1	AT1G76310	55.804	448	148	10	2	408	20	458	1.14e-162	465
MS.gene67555.t1	AT2G17620	59.662	414	141	8	6	408	25	423	1.28e-159	456
MS.gene67555.t1	AT4G35620	59.048	420	138	10	6	410	27	427	5.13e-150	432
MS.gene67555.t1	AT1G76310	58.090	377	136	9	2	365	20	387	4.74e-144	415
MS.gene67555.t1	AT4G35620	59.091	374	120	9	6	365	27	381	8.33e-131	381
MS.gene67555.t1	AT1G76310	56.918	318	115	9	2	306	20	328	5.37e-112	332
MS.gene67555.t1	AT3G11520	38.987	395	214	8	35	410	26	412	2.30e-86	269
MS.gene67555.t1	AT1G20590	70.175	171	51	0	216	386	65	235	4.20e-86	263

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Find 82 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAGTTCAAATGGATT+TGG	0.319295	5.4:-15288316	MS.gene67555:CDS
AACTACCAAAAGGTCAAACT+TGG	0.515338	5.4:-15288341	MS.gene67555:CDS
AAGAGGGTCATTTGCATCAG+GGG	0.596917	5.4:+15288037	None:intergenic
AATCAGAATTTGGTTGTGGA+AGG	0.518311	5.4:-15289119	MS.gene67555:CDS
AATGGTTGACTTTCACAAGA+AGG	0.528684	5.4:-15285919	MS.gene67555:CDS
AATTGCTGTGCCATATAGTT+TGG	0.468094	5.4:+15287533	None:intergenic
ACAGCTCAATGCACTATGTA+TGG	0.490108	5.4:-15286471	MS.gene67555:CDS
ACTGGTTGACTGGCTTATTG+AGG	0.508362	5.4:-15287483	MS.gene67555:intron
AGAAAGAAGCTTCAGTTGGT+TGG	0.515982	5.4:-15287182	MS.gene67555:CDS
AGAATTAGATCTCCAACCAC+AGG	0.618555	5.4:+15287113	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTCAGTTACTTGTCAT+CGG	+	chr5.4:15288222-15288241	None:intergenic	30.0%
AAATGCTTCCTTTGACATTA+GGG	+	chr5.4:15287300-15287319	None:intergenic	30.0%
AATCCTATATTTAATCCAGG+AGG	+	chr5.4:15287643-15287662	None:intergenic	30.0%
ATGCTACATAGTTTCTGATT+TGG	+	chr5.4:15286286-15286305	None:intergenic	30.0%
CTACTGCAATATAAAGGTTT+AGG	+	chr5.4:15288177-15288196	None:intergenic	30.0%
GATTAATCAGAATTTGGTTG+TGG	-	chr5.4:15285924-15285943	MS.gene67555:CDS	30.0%
GTAAGCATTATCCATATTTG+GGG	+	chr5.4:15287734-15287753	None:intergenic	30.0%
TAAATGCTTCCTTTGACATT+AGG	+	chr5.4:15287301-15287320	None:intergenic	30.0%
TAAGCATTATCCATATTTGG+GGG	+	chr5.4:15287733-15287752	None:intergenic	30.0%
TGACATTAATGAAAGGATGA+GGG	-	chr5.4:15287537-15287556	MS.gene67555:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	15285812	15289257	15285812	ID=MS.gene67555
chr5.4	mRNA	15285812	15289257	15285812	ID=MS.gene67555.t1;Parent=MS.gene67555
chr5.4	exon	15289254	15289257	15289254	ID=MS.gene67555.t1.exon1;Parent=MS.gene67555.t1
chr5.4	CDS	15289254	15289257	15289254	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15289077	15289194	15289077	ID=MS.gene67555.t1.exon2;Parent=MS.gene67555.t1
chr5.4	CDS	15289077	15289194	15289077	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15288919	15288975	15288919	ID=MS.gene67555.t1.exon3;Parent=MS.gene67555.t1
chr5.4	CDS	15288919	15288975	15288919	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15288459	15288504	15288459	ID=MS.gene67555.t1.exon4;Parent=MS.gene67555.t1
chr5.4	CDS	15288459	15288504	15288459	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15288213	15288365	15288213	ID=MS.gene67555.t1.exon5;Parent=MS.gene67555.t1
chr5.4	CDS	15288213	15288365	15288213	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15287986	15288111	15287986	ID=MS.gene67555.t1.exon6;Parent=MS.gene67555.t1
chr5.4	CDS	15287986	15288111	15287986	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15287484	15287573	15287484	ID=MS.gene67555.t1.exon7;Parent=MS.gene67555.t1
chr5.4	CDS	15287484	15287573	15287484	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15287070	15287291	15287070	ID=MS.gene67555.t1.exon8;Parent=MS.gene67555.t1
chr5.4	CDS	15287070	15287291	15287070	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15286711	15286809	15286711	ID=MS.gene67555.t1.exon9;Parent=MS.gene67555.t1
chr5.4	CDS	15286711	15286809	15286711	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15286411	15286589	15286411	ID=MS.gene67555.t1.exon10;Parent=MS.gene67555.t1
chr5.4	CDS	15286411	15286589	15286411	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1
chr5.4	exon	15285812	15285956	15285812	ID=MS.gene67555.t1.exon11;Parent=MS.gene67555.t1
chr5.4	CDS	15285812	15285956	15285812	ID=cds.MS.gene67555.t1;Parent=MS.gene67555.t1

Gene Sequence

>MS.gene67555

ATGGGTTGTTGAATTTTTTAATTTATTAATTAATTGATTAATTAATTGTTTTTGTGATAATAGGAGGGTTAGATTCTAGAAAGGTTGGGCAAAACAGAAGAGCATTGGGTGTGATTAATCAGAATTTGGTTGTGGAAGGACGTCCTTATCCTTGTGTTGTTAACAAGAGGGCATTGTCAGAGTAAATTCTTGATCAGATTATGAACCCTTCTTTTTGTGATTGTGAATTTGTTTTCTTTTGTGGTTTTTGGTTTTGATTTATGGTTTGTGGGTGTATCACAGGAGAAATGATGTTTGTGAGAAGAAACAAGCGGATCCGGTTCATCGACCCATCACTAGGTGAGGAATTGATGATTTAAGTTTCTGGTTTGGTTCATAGACCCTTTAGTGTAATTTGAATTTCTGGATTGGTTGACCATAAGAAAAAACAAAGATATTGAGATAAGTGTTTGAATTTGGCAATTTTAAAAACCAAATCAGAAACTATGTAGCATTGACAATTCAGATTATTGGCATGTCTAGTGTTCGACAGATGTCCGACGCCACATTATCAGATGTGGTTAAATTCAATTACTATTATTTTCTTGAATTAATTTGTCATCCGTATCTACATCTACATGTCACGGTGTCTCTGTCATGTCAGGTGTCTGTGTCAGTGCGTTATAGATCAGAAATAATAGAATTTTTCATATTATTTCCATGCAAGTTTTGCTAAAATGATGATGGACTTATCTTGATTTACTGTTATATTAGGAGGTTTGCTGCAAAGATTGCTAGCACAAAAACATCTAATGCTGAGGTAGAATCTTCTATTCCTTTGTGAAATTTTGCTACATTGTACAGATTCTTACCTTTTGACTAAGATTTTGAATGTTGGGGTCAATTTGAATAGGGAACTACCAAAAGGTCAAACTTGGCAAAATCAAGTTCAAATGGATTTGGAGATTTCATATTTGTTGATGATGAACACAAGCCAGTGGAGGATCAGCCAGTGCCAATGGCTTTAGAGCAAACAGAACCAATGCATAGCGAATCAGATCGGATGGTAATTCTTTAATGTCCTGTTTATTTAATTAGTTAATAAGTTCAAATTTTAAATCCTTTTTTTAAATTTTAGTTGTTGACTGCAAATAATTGGTCTTATAGGAGGAAGTTGAGATGGAGGATATCATGGAAGAGCCTGTTATGGACATTGACACCCCTGATGCAAATGACCCTCTTGCAGTTGCTGAATATATTGAAGATCTTTACTCTTACTACAGAAAAGTTGAGGTACATTTGGAATCAATATTTTAGAACACCATTTGGATTTTAGTTCAAATGGAATATATGAAGCAATGACTTAGACATCTATAATAATTTGAGAAAAAACAATAATTGAATGTAATGGTGTGTGCCATTGTCACACTGACATGTGTTTTTGGCACCTGTCCACATCCACCTTCAAATTTTAGTGTGGTTGCTACATATACCGCTCTGGTTGAGCCCTAATGTCAAAGGAAGCATTTATTGTATTTTCTCTTTTATTATAGCTTATTTCACTGTATTTAATCAGCATGAAACCAAATTTATACTCTTGAATTTTCACTTTTATAGTTTTATGTAAATTGATTTCAGAATTCCAATTAATATGGCAATTCTTTCCAATCAAATTTCAATAACAAATAGCATTAACTACATGCAGAGTACTAGCTGTGTTTCACCAAACTATATGGCACAGCAATTTGACATTAATGAAAGGATGAGGGCTATACTGGTTGACTGGCTTATTGAGGTATATTCAATGTTCCTTCTGAATCACTATACCTTGAAAAATGCTATTGACTTGCCTCCTGGATTAAATATAGGATTAATTATGTCTAAAAGCATAATTAACTCTTAAATATAATTATCATTAACTTTTAGTAAATTTAATTTCCCCCCAAATATGGATAATGCTTACTTGTTTTGCATGAACCCTTTTCAGGTGCATGACAAATTCGACCTCATGCATGAGACATTGTTTCTCACTGTCAATCTTATAGACAGATTTTTGGAAAAGCAGTCTGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTTTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCAGTGCCTGTGGTTGGAGATCTAATTCTTATATCAGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGTAACATTTCTTTGCTTGCTTATTGTGTCAGAACCTTTACATTTATAGCATTTGTGGAGCCACTCAATAACACAACCAAGGTTTTAAAACTGCAGTCCTCTTGCAGTTTCTGTGGTGACATTGAAAATCTTTGTGGTAGCGCAGACTTCTTTGCGACTGCAGAGACATAAAAAACCTAAACCTTTATATTGCAGTAGCGCAGACCTTTTTCTAAAAATTCCGATGACAAGTAACTGAGATTTGTGTGTAAAATTTTGTAGGAGAAGGTGATGGTCAATGCATTGAAGTTTAACATATCTGTGCCGACAGCCTATGTTTTCATGAGAAGGTTCTTAAAGGCGGCTCAAGCAGACAGAAAAGTAAGCACTCAAATTTCTGCCTAATATATTTCCATGCCATTTTTTTTTTCTTTATCATAACTAGTAATACCATAGTTACTAATTACAAATACTTTTTGCTATATTGCTCACCATGAAACAGCTTGAGCTGCTAGCTTTCTTCTTGATTGAGCTATCTCTTGTAGAATATGCAATGTTGAAGTTCTCTCCTTCTCAACTAGCTGCCGCTGCTGTCTATACAGCTCAATGCACTATGTATGGTGTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTACTCTGAAGATCAACTCTTGTAAGCATTTTAAAGTTCAGTCTTTTTCTAGTTCCAACTAAATCGAAGGCTTATTCATTATGAGTTCAAAAACTATGCGCAATTGTGTTGGTCTATAAAAATTGAACATTCAATCATATCACACATGTAGATATTTGTTGAGAAATATAACAAAGCTAGACATCATTATGAGTTATGATATGATTAGATGTACGTGTAAACTACTAACTAGTAATTCTTTGAGATCAAAAGACTATGCCTCGGAGTAGAAGAATCGTGCATTCAATCTTATCACACATGTTGATATTTGTTGAGAGATATAACAAAATGACATCATAGGGAGATACGATTAGATGCATCTGTAGATAATTTTACAAAATCAGTGCCATAACCTTTTTTTTATATAGTTATTATGAAATGTATGCTAAATAAATACTAAATAGTGACTGCTTTGTTTGTGACTACTTACTTACAGAGAATGCTCTAGTTTAATGGTTGACTTTCACAAGAAGGCTGGGACAGGGAAACTTACAGGAGCACATAGGAAGTATTGCACATCAAAATTTAGCTATACTGCGAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACGAGTTGTAG

Protein sequence

>MS.gene67555.t1

MGGLDSRKVGQNRRALGVINQNLVVEGRPYPCVVNKRALSERNDVCEKKQADPVHRPITRRFAAKIASTKTSNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMHSESDRMEEVEMEDIMEEPVMDIDTPDANDPLAVAEYIEDLYSYYRKVESTSCVSPNYMAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNALKFNISVPTAYVFMRRFLKAAQADRKLELLAFFLIELSLVEYAMLKFSPSQLAAAAVYTAQCTMYGVKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFSYTAKCEPASFLLENEL