Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017661.t1 | XP_003629355.1 | 98.2 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 8.60E-147 | 529.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017661.t1 | Q9FN50 | 37.3 | 244 | 139 | 6 | 44 | 281 | 22 | 257 | 1.3e-31 | 138.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017661.t1 | G7LD00 | 98.2 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 6.2e-147 | 529.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017661 | MS.gene033008 | PPI |
| MS.gene017661 | MS.gene68971 | PPI |
| MS.gene017661 | MS.gene044507 | PPI |
| MS.gene017661 | MS.gene038794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017661.t1 | MTR_8g076220 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 561 |
| MS.gene017661.t1 | MTR_4g112540 | 39.196 | 199 | 117 | 3 | 85 | 281 | 54 | 250 | 2.70e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017661.t1 | AT3G51140 | 63.241 | 253 | 86 | 4 | 30 | 281 | 31 | 277 | 1.43e-112 | 326 |
| MS.gene017661.t1 | AT3G51140 | 60.099 | 203 | 76 | 3 | 30 | 231 | 31 | 229 | 2.16e-82 | 248 |
| MS.gene017661.t1 | AT5G23040 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.17e-44 | 151 |
| MS.gene017661.t1 | AT5G23040 | 38.222 | 225 | 127 | 5 | 61 | 281 | 41 | 257 | 3.17e-44 | 151 |
Find 65 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAACAATGATTGTATC+TGG | 0.187129 | 8.2:+29127939 | None:intergenic |
| AGGATAAGAGCTTTGCTTTA+TGG | 0.229239 | 8.2:+29130019 | MS.gene017661:CDS |
| CAAGGCAACGAGGAGGTAAT+TGG | 0.237294 | 8.2:-29127989 | None:intergenic |
| GCCTTGAATCACGCCGTGTT+CGG | 0.251804 | 8.2:+29128006 | MS.gene017661:CDS |
| GCCCTTGGTCCCTTGATTAT+AGG | 0.265287 | 8.2:-29130673 | None:intergenic |
| GGATAAGAGCTTTGCTTTAT+GGG | 0.286176 | 8.2:+29130020 | MS.gene017661:CDS |
| CTTATTCCAAGTCGTTTATA+CGG | 0.293016 | 8.2:-29129626 | None:intergenic |
| GGATCGCTCACATTAATTCT+TGG | 0.335746 | 8.2:-29129605 | None:intergenic |
| CCTTGAATCACGCCGTGTTC+GGG | 0.341263 | 8.2:+29128007 | MS.gene017661:CDS |
| CGAGGAAGGGCCAACACTTC+AGG | 0.348949 | 8.2:+29129943 | MS.gene017661:CDS |
| GCCCTGCATATTTCTGAATC+AGG | 0.356185 | 8.2:-29129691 | None:intergenic |
| AAGGCAACGAGGAGGTAATT+GGG | 0.388453 | 8.2:-29127988 | None:intergenic |
| GCTGTTGGGAACCTTCTTGA+TGG | 0.390968 | 8.2:+29130630 | MS.gene017661:CDS |
| CAATCAATCCCGATTCGTTC+AGG | 0.407889 | 8.2:+29129823 | MS.gene017661:CDS |
| CTCTGACAGCCTGAACGAAT+CGG | 0.408522 | 8.2:-29129832 | None:intergenic |
| GATCGCTCACATTAATTCTT+GGG | 0.413368 | 8.2:-29129604 | None:intergenic |
| CCCGAACACGGCGTGATTCA+AGG | 0.430871 | 8.2:-29128007 | None:intergenic |
| CAAGGGACCAAGGGCATTTG+AGG | 0.437968 | 8.2:+29130681 | MS.gene017661:CDS |
| CTTTAGCCTTCATATAAGAT+AGG | 0.451503 | 8.2:-29130749 | None:intergenic |
| TCCTCCCATTCCTATAATCA+AGG | 0.453208 | 8.2:+29130663 | MS.gene017661:CDS |
| AGTGCTATGGGTGCTTCATT+TGG | 0.458480 | 8.2:+29128255 | MS.gene017661:CDS |
| TGGTCCCTTGATTATAGGAA+TGG | 0.471280 | 8.2:-29130668 | None:intergenic |
| TCTGACAGCCTGAACGAATC+GGG | 0.472429 | 8.2:-29129831 | None:intergenic |
| CTGAAGTGTTGGCCCTTCCT+CGG | 0.475487 | 8.2:-29129942 | None:intergenic |
| CATCGACCTATCTTATATGA+AGG | 0.484004 | 8.2:+29130743 | MS.gene017661:CDS |
| AGTGTTGGCCCTTCCTCGGT+TGG | 0.487936 | 8.2:-29129938 | None:intergenic |
| TCAATTGGTCAGAAGTGCTA+TGG | 0.489625 | 8.2:+29128242 | MS.gene017661:CDS |
| TTCCTGATTCAGAAATATGC+AGG | 0.491805 | 8.2:+29129689 | MS.gene017661:CDS |
| TGATAGACGACAAGTTCAAT+TGG | 0.501549 | 8.2:+29128227 | MS.gene017661:CDS |
| GGTCCCTTGATTATAGGAAT+GGG | 0.504384 | 8.2:-29130667 | None:intergenic |
| TATATGATCGGCTGAAGAGC+AGG | 0.515820 | 8.2:+29129999 | MS.gene017661:CDS |
| ATATAACAATGATTGTATCT+GGG | 0.516139 | 8.2:+29127940 | None:intergenic |
| GACTCAATTGAATCTACACT+TGG | 0.523228 | 8.2:-29129719 | None:intergenic |
| TTTATAATGAATATAGTGGA+TGG | 0.536659 | 8.2:-29129869 | None:intergenic |
| TAGGCATACCTTTCCACACT+GGG | 0.543225 | 8.2:-29128077 | None:intergenic |
| GATATTGCAACCTGAAGTGT+TGG | 0.546273 | 8.2:-29129953 | None:intergenic |
| GTTCTCTTTCCAACCGAGGA+AGG | 0.550887 | 8.2:+29129929 | MS.gene017661:CDS |
| TCCTATAATCAAGGGACCAA+GGG | 0.560682 | 8.2:+29130672 | MS.gene017661:CDS |
| GTGATCACCTCAAATGCCCT+TGG | 0.562552 | 8.2:-29130688 | None:intergenic |
| AGGCAACGAGGAGGTAATTG+GGG | 0.569451 | 8.2:-29127987 | None:intergenic |
| CAATTGGTCAGAAGTGCTAT+GGG | 0.571474 | 8.2:+29128243 | MS.gene017661:CDS |
| CAACGTATTTCGTATATGAT+CGG | 0.574288 | 8.2:+29129987 | MS.gene017661:CDS |
| AGCGATCCGTATAAACGACT+TGG | 0.578474 | 8.2:+29129620 | MS.gene017661:CDS |
| TTCTCTTTCCAACCGAGGAA+GGG | 0.587448 | 8.2:+29129930 | MS.gene017661:CDS |
| CCTCCCATTCCTATAATCAA+GGG | 0.591184 | 8.2:+29130664 | MS.gene017661:CDS |
| CCCTTGATTATAGGAATGGG+AGG | 0.596769 | 8.2:-29130664 | None:intergenic |
| TTCCTATAATCAAGGGACCA+AGG | 0.602791 | 8.2:+29130671 | MS.gene017661:CDS |
| AAGAAGAAATTCAAGCAGCT+AGG | 0.603879 | 8.2:+29129663 | MS.gene017661:CDS |
| CAGCGTTTCCCAGTGTGGAA+AGG | 0.603927 | 8.2:+29128069 | MS.gene017661:CDS |
| CGATTCGTTCAGGCTGTCAG+AGG | 0.606356 | 8.2:+29129833 | MS.gene017661:CDS |
| AAGTGTAGATTCAATTGAGT+CGG | 0.607184 | 8.2:+29129721 | MS.gene017661:CDS |
| TAAACGACTTGGAATAAGCA+AGG | 0.615337 | 8.2:+29129631 | MS.gene017661:CDS |
| AATTACTGACACCATCAAGA+AGG | 0.623704 | 8.2:-29130641 | None:intergenic |
| GACCGTTCTCTTTCCAACCG+AGG | 0.637405 | 8.2:+29129925 | MS.gene017661:CDS |
| TTAGGCATACCTTTCCACAC+TGG | 0.639996 | 8.2:-29128078 | None:intergenic |
| TCCTGATTCAGAAATATGCA+GGG | 0.647834 | 8.2:+29129690 | MS.gene017661:CDS |
| AAGGACAGCGTTTCCCAGTG+TGG | 0.653221 | 8.2:+29128064 | MS.gene017661:CDS |
| TTCCTCGGTTGGAAAGAGAA+CGG | 0.656823 | 8.2:-29129927 | None:intergenic |
| GATATGTCAAATGATTCTGC+TGG | 0.657645 | 8.2:+29128279 | MS.gene017661:CDS |
| TGGCTGGTAAATGTATACAA+AGG | 0.664469 | 8.2:+29128045 | MS.gene017661:CDS |
| AAAATGACATGACCCGAACA+CGG | 0.665683 | 8.2:-29128019 | None:intergenic |
| ATGATTGTATCTGGGTTGAG+TGG | 0.684151 | 8.2:+29127948 | MS.gene017661:CDS |
| GGCAACGAGGAGGTAATTGG+GGG | 0.687219 | 8.2:-29127986 | None:intergenic |
| CGGCGTGATTCAAGGCAACG+AGG | 0.712176 | 8.2:-29127999 | None:intergenic |
| CGTGATTCAAGGCAACGAGG+AGG | 0.718984 | 8.2:-29127996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAATGATTTTTATGA+TGG | - | chr8.2:29130268-29130287 | None:intergenic | 10.0% |
| !! | ATATTTCATGATACATAAAA+TGG | + | chr8.2:29128333-29128352 | MS.gene017661:intron | 15.0% |
| !!! | AAAAAAAATAGATTTTGAGT+TGG | + | chr8.2:29130180-29130199 | MS.gene017661:intron | 15.0% |
| !!! | AGTTTTTATAATGAATATAG+TGG | - | chr8.2:29129876-29129895 | None:intergenic | 15.0% |
| !!! | GATAACATATGTTTTATTAT+GGG | + | chr8.2:29130717-29130736 | MS.gene017661:CDS | 15.0% |
| !!! | GTTTAGAAAAAAATAGATTT+TGG | + | chr8.2:29130320-29130339 | MS.gene017661:intron | 15.0% |
| !!! | TCTATTTTTTTCTAAACATA+AGG | - | chr8.2:29130317-29130336 | None:intergenic | 15.0% |
| !!! | TGATAACATATGTTTTATTA+TGG | + | chr8.2:29130716-29130735 | MS.gene017661:CDS | 15.0% |
| !! | AACTTATGAATAACTATCAA+GGG | - | chr8.2:29129267-29129286 | None:intergenic | 20.0% |
| !! | ACACTAAACATTAAATAAGT+GGG | - | chr8.2:29129296-29129315 | None:intergenic | 20.0% |
| !! | ATTCAAATATCATATGGATA+AGG | - | chr8.2:29129506-29129525 | None:intergenic | 20.0% |
| !! | ATTCATTATAAAAACTTCAC+TGG | + | chr8.2:29129880-29129899 | MS.gene017661:CDS | 20.0% |
| !! | GTAAATCTATTGATATGAAA+AGG | - | chr8.2:29128851-29128870 | None:intergenic | 20.0% |
| !! | TAACTTATGAATAACTATCA+AGG | - | chr8.2:29129268-29129287 | None:intergenic | 20.0% |
| !! | TCAAAAAAATCCAAAACAAA+CGG | + | chr8.2:29130473-29130492 | MS.gene017661:intron | 20.0% |
| !! | TCAAAAAGTAATGATTCATT+AGG | - | chr8.2:29128099-29128118 | None:intergenic | 20.0% |
| !! | TTCATATCAATAGATTTACT+GGG | + | chr8.2:29128852-29128871 | MS.gene017661:intron | 20.0% |
| !! | TTTCATATCAATAGATTTAC+TGG | + | chr8.2:29128851-29128870 | MS.gene017661:intron | 20.0% |
| !!! | ATTATTGTAGAAGAAAGTAT+AGG | + | chr8.2:29128613-29128632 | MS.gene017661:intron | 20.0% |
| !!! | CTTATTGTTGGTTTTATATA+AGG | - | chr8.2:29129531-29129550 | None:intergenic | 20.0% |
| !!! | TTTATAATGAATATAGTGGA+TGG | - | chr8.2:29129872-29129891 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATGTCAATTTTT+GGG | - | chr8.2:29129790-29129809 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGATGTCAATTTT+TGG | - | chr8.2:29129791-29129810 | None:intergenic | 20.0% |
| ! | AAATGATTCTGTGATCATTA+TGG | + | chr8.2:29128433-29128452 | MS.gene017661:intron | 25.0% |
| ! | AAGGTGATTCAAATATCATA+TGG | - | chr8.2:29129512-29129531 | None:intergenic | 25.0% |
| ! | ACTTATGAATAACTATCAAG+GGG | - | chr8.2:29129266-29129285 | None:intergenic | 25.0% |
| ! | CAAAAAAATCCAAAACAAAC+GGG | + | chr8.2:29130474-29130493 | MS.gene017661:intron | 25.0% |
| ! | CACACTAAACATTAAATAAG+TGG | - | chr8.2:29129297-29129316 | None:intergenic | 25.0% |
| ! | GTTAAGCTATAACTTATTGT+TGG | - | chr8.2:29129543-29129562 | None:intergenic | 25.0% |
| ! | TAAAATGGATCTAGTAAAAC+TGG | + | chr8.2:29128348-29128367 | MS.gene017661:intron | 25.0% |
| ! | TAAAATGTTCACATATGACA+TGG | - | chr8.2:29129357-29129376 | None:intergenic | 25.0% |
| ! | TACAAAACATCAATCAAACA+AGG | - | chr8.2:29128781-29128800 | None:intergenic | 25.0% |
| ! | TGACATCAACAAAAAAATCA+GGG | + | chr8.2:29129796-29129815 | MS.gene017661:CDS | 25.0% |
| ! | TTAAAAGAACAAAAGCAGAA+AGG | - | chr8.2:29128890-29128909 | None:intergenic | 25.0% |
| ! | TTGACATCAACAAAAAAATC+AGG | + | chr8.2:29129795-29129814 | MS.gene017661:CDS | 25.0% |
| !! | AAATTAGGAATCAGTTTTCT+TGG | + | chr8.2:29128644-29128663 | MS.gene017661:intron | 25.0% |
| !! | TGAAATAGCTTTTCATTTTG+AGG | + | chr8.2:29130353-29130372 | MS.gene017661:intron | 25.0% |
| !!! | ATATCATTTTGATGCCTTTA+TGG | + | chr8.2:29130530-29130549 | MS.gene017661:intron | 25.0% |
| !!! | CATTTTGATAGCATAACTTA+GGG | + | chr8.2:29130139-29130158 | MS.gene017661:intron | 25.0% |
| !!! | GAATCATTACTTTTTGAACT+TGG | + | chr8.2:29128102-29128121 | MS.gene017661:intron | 25.0% |
| !!! | GTATGTTTTCTGAAACAATA+CGG | + | chr8.2:29128386-29128405 | MS.gene017661:intron | 25.0% |
| !!! | TATGTTTTCTGAAACAATAC+GGG | + | chr8.2:29128387-29128406 | MS.gene017661:intron | 25.0% |
| !!! | TCATTTTGATAGCATAACTT+AGG | + | chr8.2:29130138-29130157 | MS.gene017661:intron | 25.0% |
| AAGTGTAGATTCAATTGAGT+CGG | + | chr8.2:29129721-29129740 | MS.gene017661:CDS | 30.0% | |
| AATGTCATACAATGAGAACA+AGG | - | chr8.2:29130501-29130520 | None:intergenic | 30.0% | |
| AGAGAGATTCTGATATGATA+AGG | - | chr8.2:29129230-29129249 | None:intergenic | 30.0% | |
| ATGTCATACAATGAGAACAA+GGG | - | chr8.2:29130500-29130519 | None:intergenic | 30.0% | |
| ATGTGAAAACTTAACATGAG+AGG | - | chr8.2:29129141-29129160 | None:intergenic | 30.0% | |
| CAACGTATTTCGTATATGAT+CGG | + | chr8.2:29129987-29130006 | MS.gene017661:CDS | 30.0% | |
| CAGTTAAACAACTGCTTTAT+GGG | + | chr8.2:29129043-29129062 | MS.gene017661:intron | 30.0% | |
| CATGTGAAAACTTAACATGA+GGG | - | chr8.2:29129142-29129161 | None:intergenic | 30.0% | |
| CTTATGAATAACTATCAAGG+GGG | - | chr8.2:29129265-29129284 | None:intergenic | 30.0% | |
| CTTATTCCAAGTCGTTTATA+CGG | - | chr8.2:29129629-29129648 | None:intergenic | 30.0% | |
| GCTTATTTATATCCGTACTT+TGG | + | chr8.2:29130578-29130597 | MS.gene017661:intron | 30.0% | |
| GTAGTTAGTTAGTTAGGATT+TGG | + | chr8.2:29128666-29128685 | MS.gene017661:intron | 30.0% | |
| TAATCTAGGAGATGAAAAAC+TGG | - | chr8.2:29128202-29128221 | None:intergenic | 30.0% | |
| TATCAATAGATTTACTGGGA+CGG | + | chr8.2:29128856-29128875 | MS.gene017661:intron | 30.0% | |
| TCAGTTAAACAACTGCTTTA+TGG | + | chr8.2:29129042-29129061 | MS.gene017661:intron | 30.0% | |
| TCATGTGAAAACTTAACATG+AGG | - | chr8.2:29129143-29129162 | None:intergenic | 30.0% | |
| TGAACTTGGAACTTTATGTA+AGG | + | chr8.2:29128116-29128135 | MS.gene017661:intron | 30.0% | |
| TGTGAAAACTTAACATGAGA+GGG | - | chr8.2:29129140-29129159 | None:intergenic | 30.0% | |
| TTATGAATAACTATCAAGGG+GGG | - | chr8.2:29129264-29129283 | None:intergenic | 30.0% | |
| TTCTTCGTCTTCATAATTGT+TGG | + | chr8.2:29128535-29128554 | MS.gene017661:intron | 30.0% | |
| ! | ACAGTTTTCAACTAAAACAG+AGG | - | chr8.2:29129411-29129430 | None:intergenic | 30.0% |
| ! | AGAAGAAAGTATAGGAGTAT+GGG | + | chr8.2:29128621-29128640 | MS.gene017661:intron | 30.0% |
| ! | AGTTTCTTTTTCTTGACATG+TGG | + | chr8.2:29129000-29129019 | MS.gene017661:intron | 30.0% |
| ! | CAGTTTTCAACTAAAACAGA+GGG | - | chr8.2:29129410-29129429 | None:intergenic | 30.0% |
| ! | GTTTCTTTTTCTTGACATGT+GGG | + | chr8.2:29129001-29129020 | MS.gene017661:intron | 30.0% |
| ! | TAGAAGAAAGTATAGGAGTA+TGG | + | chr8.2:29128620-29128639 | MS.gene017661:intron | 30.0% |
| ! | TTCTTGGTAGTTAGTTAGTT+AGG | + | chr8.2:29128660-29128679 | MS.gene017661:intron | 30.0% |
| ! | TTTCTTTTTCTTGACATGTG+GGG | + | chr8.2:29129002-29129021 | MS.gene017661:intron | 30.0% |
| !! | AAATGAAAAGTGCTCAACAA+TGG | - | chr8.2:29130124-29130143 | None:intergenic | 30.0% |
| !! | AAGGTTCATGTTTTGTTGAA+TGG | + | chr8.2:29128135-29128154 | MS.gene017661:intron | 30.0% |
| !! | CGTCTATCACATTTTAATCT+AGG | - | chr8.2:29128216-29128235 | None:intergenic | 30.0% |
| !! | GGGAAAATTGTTTTTCAGTT+TGG | + | chr8.2:29128974-29128993 | MS.gene017661:intron | 30.0% |
| !!! | GTGGTTGGTTTTTTTGTTTT+AGG | + | chr8.2:29128692-29128711 | MS.gene017661:intron | 30.0% |
| !!! | TAGATTGCATTTTTTTCCTG+TGG | + | chr8.2:29128479-29128498 | MS.gene017661:intron | 30.0% |
| AAAAGATACTCTCTTCACAC+TGG | - | chr8.2:29128827-29128846 | None:intergenic | 35.0% | |
| AAGAAGAAATTCAAGCAGCT+AGG | + | chr8.2:29129663-29129682 | MS.gene017661:CDS | 35.0% | |
| AATTACTGACACCATCAAGA+AGG | - | chr8.2:29130644-29130663 | None:intergenic | 35.0% | |
| AGCTGAGAGAAAAACCATAA+AGG | - | chr8.2:29130547-29130566 | None:intergenic | 35.0% | |
| AGGATAAGAGCTTTGCTTTA+TGG | + | chr8.2:29130019-29130038 | MS.gene017661:CDS | 35.0% | |
| ATTGTTAGTGCAATACAGAG+AGG | - | chr8.2:29129466-29129485 | None:intergenic | 35.0% | |
| CTGAGAAGCTGAACTAAAAT+AGG | + | chr8.2:29128561-29128580 | MS.gene017661:intron | 35.0% | |
| CTGTGATCATTATGGATGTT+TGG | + | chr8.2:29128441-29128460 | MS.gene017661:intron | 35.0% | |
| CTGTGCACAATAAGGATTAA+AGG | - | chr8.2:29128733-29128752 | None:intergenic | 35.0% | |
| CTTTAATCCTTATTGTGCAC+AGG | + | chr8.2:29128731-29128750 | MS.gene017661:intron | 35.0% | |
| GACTCAATTGAATCTACACT+TGG | - | chr8.2:29129722-29129741 | None:intergenic | 35.0% | |
| GATATGTCAAATGATTCTGC+TGG | + | chr8.2:29128279-29128298 | MS.gene017661:CDS | 35.0% | |
| GATCGCTCACATTAATTCTT+GGG | - | chr8.2:29129607-29129626 | None:intergenic | 35.0% | |
| GGATAAGAGCTTTGCTTTAT+GGG | + | chr8.2:29130020-29130039 | MS.gene017661:CDS | 35.0% | |
| GTGTTTACTTGCATGTCTTA+GGG | + | chr8.2:29129436-29129455 | MS.gene017661:intron | 35.0% | |
| TAAACCAGAAGGAGTTCAAA+GGG | + | chr8.2:29128954-29128973 | MS.gene017661:intron | 35.0% | |
| TATGAATAACTATCAAGGGG+GGG | - | chr8.2:29129263-29129282 | None:intergenic | 35.0% | |
| TCCTGATTCAGAAATATGCA+GGG | + | chr8.2:29129690-29129709 | MS.gene017661:CDS | 35.0% | |
| TGATAGACGACAAGTTCAAT+TGG | + | chr8.2:29128227-29128246 | MS.gene017661:CDS | 35.0% | |
| TGGCTGGTAAATGTATACAA+AGG | + | chr8.2:29128045-29128064 | MS.gene017661:CDS | 35.0% | |
| TGTGTTTACTTGCATGTCTT+AGG | + | chr8.2:29129435-29129454 | MS.gene017661:intron | 35.0% | |
| TGTTTACTTGCATGTCTTAG+GGG | + | chr8.2:29129437-29129456 | MS.gene017661:intron | 35.0% | |
| TTCAACTAAAACAGAGGGTT+GGG | - | chr8.2:29129405-29129424 | None:intergenic | 35.0% | |
| TTCCTGATTCAGAAATATGC+AGG | + | chr8.2:29129689-29129708 | MS.gene017661:CDS | 35.0% | |
| TTCTGTAAATTGACAGGGTA+AGG | - | chr8.2:29128179-29128198 | None:intergenic | 35.0% | |
| TTTCAACTAAAACAGAGGGT+TGG | - | chr8.2:29129406-29129425 | None:intergenic | 35.0% | |
| ! | ATTTATCTTTTCGTGGCTGT+TGG | + | chr8.2:29130615-29130634 | MS.gene017661:CDS | 35.0% |
| ! | GTATAGGAGTATGGGAAATT+AGG | + | chr8.2:29128629-29128648 | MS.gene017661:intron | 35.0% |
| ! | GTTAGTTAGGATTTGGTTAG+TGG | + | chr8.2:29128673-29128692 | MS.gene017661:intron | 35.0% |
| ! | TAAACGACTTGGAATAAGCA+AGG | + | chr8.2:29129631-29129650 | MS.gene017661:CDS | 35.0% |
| ! | TCACTGGCATTTTTGTTACT+TGG | + | chr8.2:29129896-29129915 | MS.gene017661:CDS | 35.0% |
| ! | TTTATCTTTTCGTGGCTGTT+GGG | + | chr8.2:29130616-29130635 | MS.gene017661:CDS | 35.0% |
| !! | AACTGGTTCTGTAAATTGAC+AGG | - | chr8.2:29128185-29128204 | None:intergenic | 35.0% |
| !! | ACTGGTTCTGTAAATTGACA+GGG | - | chr8.2:29128184-29128203 | None:intergenic | 35.0% |
| !! | TTGGAGCATTTATCTTTTCG+TGG | + | chr8.2:29130608-29130627 | MS.gene017661:CDS | 35.0% |
| !!! | CTATTTTAGTTCAGCTTCTC+AGG | - | chr8.2:29128563-29128582 | None:intergenic | 35.0% |
| AAAATGACATGACCCGAACA+CGG | - | chr8.2:29128022-29128041 | None:intergenic | 40.0% | |
| AACAGCTGCATTTGTAGCAA+AGG | - | chr8.2:29129582-29129601 | None:intergenic | 40.0% | |
| AAGAAGGGAAACAGTCATTG+TGG | - | chr8.2:29129098-29129117 | None:intergenic | 40.0% | |
| CCTCCCATTCCTATAATCAA+GGG | + | chr8.2:29130664-29130683 | MS.gene017661:CDS | 40.0% | |
| CTAAACCAGAAGGAGTTCAA+AGG | + | chr8.2:29128953-29128972 | MS.gene017661:intron | 40.0% | |
| GACTTGTAATGCATCTCTTG+GGG | - | chr8.2:29128918-29128937 | None:intergenic | 40.0% | |
| GATATTGCAACCTGAAGTGT+TGG | - | chr8.2:29129956-29129975 | None:intergenic | 40.0% | |
| GGACTTGTAATGCATCTCTT+GGG | - | chr8.2:29128919-29128938 | None:intergenic | 40.0% | |
| GGATCGCTCACATTAATTCT+TGG | - | chr8.2:29129608-29129627 | None:intergenic | 40.0% | |
| GGTCCCTTGATTATAGGAAT+GGG | - | chr8.2:29130670-29130689 | None:intergenic | 40.0% | |
| GTCTAGCAGACAATATCATC+AGG | - | chr8.2:29130102-29130121 | None:intergenic | 40.0% | |
| TAGACTTCCTGTGCACAATA+AGG | - | chr8.2:29128741-29128760 | None:intergenic | 40.0% | |
| TCCTATAATCAAGGGACCAA+GGG | + | chr8.2:29130672-29130691 | MS.gene017661:CDS | 40.0% | |
| TCCTCCCATTCCTATAATCA+AGG | + | chr8.2:29130663-29130682 | MS.gene017661:CDS | 40.0% | |
| TGGTCCCTTGATTATAGGAA+TGG | - | chr8.2:29130671-29130690 | None:intergenic | 40.0% | |
| TTCCTATAATCAAGGGACCA+AGG | + | chr8.2:29130671-29130690 | MS.gene017661:CDS | 40.0% | |
| ! | ATGATTGTATCTGGGTTGAG+TGG | + | chr8.2:29127948-29127967 | MS.gene017661:CDS | 40.0% |
| ! | GGTTTTTCTCTCAGCTTCTT+AGG | + | chr8.2:29130551-29130570 | MS.gene017661:intron | 40.0% |
| ! | GTTAGGATTTGGTTAGTGGT+TGG | + | chr8.2:29128677-29128696 | MS.gene017661:intron | 40.0% |
| ! | TATATCCGTACTTTGGTGCA+GGG | + | chr8.2:29130585-29130604 | MS.gene017661:intron | 40.0% |
| ! | TTATATCCGTACTTTGGTGC+AGG | + | chr8.2:29130584-29130603 | MS.gene017661:intron | 40.0% |
| ! | TTTTCCCTTTGAACTCCTTC+TGG | - | chr8.2:29128961-29128980 | None:intergenic | 40.0% |
| ! | TTTTTCTTGACATGTGGGGT+GGG | + | chr8.2:29129006-29129025 | MS.gene017661:intron | 40.0% |
| !! | ATGGATGTTTGGTTCTCTTG+TGG | + | chr8.2:29128452-29128471 | MS.gene017661:intron | 40.0% |
| !! | CAATTGGTCAGAAGTGCTAT+GGG | + | chr8.2:29128243-29128262 | MS.gene017661:CDS | 40.0% |
| !! | TCAATTGGTCAGAAGTGCTA+TGG | + | chr8.2:29128242-29128261 | MS.gene017661:CDS | 40.0% |
| !! | TCTTGCTCATTTGGTTTGCT+AGG | + | chr8.2:29128502-29128521 | MS.gene017661:intron | 40.0% |
| AACCAAATGAGCAAGACCAC+AGG | - | chr8.2:29128498-29128517 | None:intergenic | 45.0% | |
| AAGGCAACGAGGAGGTAATT+GGG | - | chr8.2:29127991-29128010 | None:intergenic | 45.0% | |
| AGATGCATTACAAGTCCGAG+AGG | + | chr8.2:29128922-29128941 | MS.gene017661:intron | 45.0% | |
| AGCGATCCGTATAAACGACT+TGG | + | chr8.2:29129620-29129639 | MS.gene017661:CDS | 45.0% | |
| AGTGCTATGGGTGCTTCATT+TGG | + | chr8.2:29128255-29128274 | MS.gene017661:CDS | 45.0% | |
| CCCTTGATTATAGGAATGGG+AGG | - | chr8.2:29130667-29130686 | None:intergenic | 45.0% | |
| CGGACTTGTAATGCATCTCT+TGG | - | chr8.2:29128920-29128939 | None:intergenic | 45.0% | |
| GATGCATTACAAGTCCGAGA+GGG | + | chr8.2:29128923-29128942 | MS.gene017661:intron | 45.0% | |
| TAGGCATACCTTTCCACACT+GGG | - | chr8.2:29128080-29128099 | None:intergenic | 45.0% | |
| TATATGATCGGCTGAAGAGC+AGG | + | chr8.2:29129999-29130018 | MS.gene017661:CDS | 45.0% | |
| TATGGGTGACAGACAGATGT+TGG | + | chr8.2:29129060-29129079 | MS.gene017661:intron | 45.0% | |
| TTAGGCATACCTTTCCACAC+TGG | - | chr8.2:29128081-29128100 | None:intergenic | 45.0% | |
| TTCCTCGGTTGGAAAGAGAA+CGG | - | chr8.2:29129930-29129949 | None:intergenic | 45.0% | |
| TTCTCTTTCCAACCGAGGAA+GGG | + | chr8.2:29129930-29129949 | MS.gene017661:CDS | 45.0% | |
| ! | CAATCAATCCCGATTCGTTC+AGG | + | chr8.2:29129823-29129842 | MS.gene017661:CDS | 45.0% |
| ! | CTTTTTCTTGACATGTGGGG+TGG | + | chr8.2:29129005-29129024 | MS.gene017661:intron | 45.0% |
| ! | GCCCTGCATATTTCTGAATC+AGG | - | chr8.2:29129694-29129713 | None:intergenic | 45.0% |
| ! | TTCCTGTGGTCTTGCTCATT+TGG | + | chr8.2:29128493-29128512 | MS.gene017661:intron | 45.0% |
| ! | TTTTCTTGACATGTGGGGTG+GGG | + | chr8.2:29129007-29129026 | MS.gene017661:intron | 45.0% |
| !! | GATGTTTGGTTCTCTTGTGG+AGG | + | chr8.2:29128455-29128474 | MS.gene017661:intron | 45.0% |
| !!! | GTCATGTCATTTTCTGTGGC+TGG | + | chr8.2:29128029-29128048 | MS.gene017661:CDS | 45.0% |
| !!! | TCGGGTCATGTCATTTTCTG+TGG | + | chr8.2:29128025-29128044 | MS.gene017661:CDS | 45.0% |
| !!! | TAAAAATGATTTTTTTTTAA+TGG | + | chr8.2:29130377-29130396 | MS.gene017661:intron | 5.0% |
| AACATGAGGGTCTCTGCCTA+AGG | - | chr8.2:29129186-29129205 | None:intergenic | 50.0% | |
| ACATGAGGGTCTCTGCCTAA+GGG | - | chr8.2:29129185-29129204 | None:intergenic | 50.0% | |
| AGGCAACGAGGAGGTAATTG+GGG | - | chr8.2:29127990-29128009 | None:intergenic | 50.0% | |
| CAAGGCAACGAGGAGGTAAT+TGG | - | chr8.2:29127992-29128011 | None:intergenic | 50.0% | |
| CTAAAACAGAGGGTTGGGAG+TGG | - | chr8.2:29129400-29129419 | None:intergenic | 50.0% | |
| CTCTGACAGCCTGAACGAAT+CGG | - | chr8.2:29129835-29129854 | None:intergenic | 50.0% | |
| GCCCTTGGTCCCTTGATTAT+AGG | - | chr8.2:29130676-29130695 | None:intergenic | 50.0% | |
| GCTGTTGGGAACCTTCTTGA+TGG | + | chr8.2:29130630-29130649 | MS.gene017661:CDS | 50.0% | |
| GTGATCACCTCAAATGCCCT+TGG | - | chr8.2:29130691-29130710 | None:intergenic | 50.0% | |
| GTTCTCTTTCCAACCGAGGA+AGG | + | chr8.2:29129929-29129948 | MS.gene017661:CDS | 50.0% | |
| TCCAACCCTGCACCAAAGTA+CGG | - | chr8.2:29130593-29130612 | None:intergenic | 50.0% | |
| TCTGACAGCCTGAACGAATC+GGG | - | chr8.2:29129834-29129853 | None:intergenic | 50.0% | |
| TGACTTTCTTCCCCACCCTT+AGG | + | chr8.2:29129167-29129186 | MS.gene017661:intron | 50.0% | |
| TTCCCTTCTTCCCTACCCTT+GGG | + | chr8.2:29129108-29129127 | MS.gene017661:intron | 50.0% | |
| TTTCCCTTCTTCCCTACCCT+TGG | + | chr8.2:29129107-29129126 | MS.gene017661:intron | 50.0% | |
| TTTCTTGACATGTGGGGTGG+GGG | + | chr8.2:29129008-29129027 | MS.gene017661:intron | 50.0% | |
| ! | GAACAAGGGCCCGTTTGTTT+TGG | - | chr8.2:29130486-29130505 | None:intergenic | 50.0% |
| AAGGACAGCGTTTCCCAGTG+TGG | + | chr8.2:29128064-29128083 | MS.gene017661:CDS | 55.0% | |
| AGGGTTGGGAGTGGCACAAA+TGG | - | chr8.2:29129391-29129410 | None:intergenic | 55.0% | |
| ATGAGAGGGTCTCTGCCCAA+GGG | - | chr8.2:29129126-29129145 | None:intergenic | 55.0% | |
| CAGCGTTTCCCAGTGTGGAA+AGG | + | chr8.2:29128069-29128088 | MS.gene017661:CDS | 55.0% | |
| CATTACAAGTCCGAGAGGGC+AGG | + | chr8.2:29128927-29128946 | MS.gene017661:intron | 55.0% | |
| CCTTGAATCACGCCGTGTTC+GGG | + | chr8.2:29128007-29128026 | MS.gene017661:CDS | 55.0% | |
| CGATTCGTTCAGGCTGTCAG+AGG | + | chr8.2:29129833-29129852 | MS.gene017661:CDS | 55.0% | |
| CGTGATTCAAGGCAACGAGG+AGG | - | chr8.2:29127999-29128018 | None:intergenic | 55.0% | |
| GACCGTTCTCTTTCCAACCG+AGG | + | chr8.2:29129925-29129944 | MS.gene017661:CDS | 55.0% | |
| GCCTTGAATCACGCCGTGTT+CGG | + | chr8.2:29128006-29128025 | MS.gene017661:CDS | 55.0% | |
| GGCAACGAGGAGGTAATTGG+GGG | - | chr8.2:29127989-29128008 | None:intergenic | 55.0% | |
| TGCCCAAGGGTAGGGAAGAA+GGG | - | chr8.2:29129113-29129132 | None:intergenic | 55.0% | |
| TTCTTGACATGTGGGGTGGG+GGG | + | chr8.2:29129009-29129028 | MS.gene017661:intron | 55.0% | |
| ! | TCCGTACTTTGGTGCAGGGT+TGG | + | chr8.2:29130589-29130608 | MS.gene017661:intron | 55.0% |
| !! | CAAGGGACCAAGGGCATTTG+AGG | + | chr8.2:29130681-29130700 | MS.gene017661:CDS | 55.0% |
| !! | CTGAAGTGTTGGCCCTTCCT+CGG | - | chr8.2:29129945-29129964 | None:intergenic | 55.0% |
| AGGGTCTCTGCCCAAGGGTA+GGG | - | chr8.2:29129121-29129140 | None:intergenic | 60.0% | |
| AGGGTCTCTGCCTAAGGGTG+GGG | - | chr8.2:29129180-29129199 | None:intergenic | 60.0% | |
| CATGAGAGGGTCTCTGCCCA+AGG | - | chr8.2:29129127-29129146 | None:intergenic | 60.0% | |
| CCCGAACACGGCGTGATTCA+AGG | - | chr8.2:29128010-29128029 | None:intergenic | 60.0% | |
| CGAGGAAGGGCCAACACTTC+AGG | + | chr8.2:29129943-29129962 | MS.gene017661:CDS | 60.0% | |
| CGGCGTGATTCAAGGCAACG+AGG | - | chr8.2:29128002-29128021 | None:intergenic | 60.0% | |
| CTGCCCAAGGGTAGGGAAGA+AGG | - | chr8.2:29129114-29129133 | None:intergenic | 60.0% | |
| GAGGGTCTCTGCCTAAGGGT+GGG | - | chr8.2:29129181-29129200 | None:intergenic | 60.0% | |
| GGGCAGGTGGCTAAACCAGA+AGG | + | chr8.2:29128943-29128962 | MS.gene017661:intron | 60.0% | |
| GGTTTAGCCACCTGCCCTCT+CGG | - | chr8.2:29128940-29128959 | None:intergenic | 60.0% | |
| TACAAGTCCGAGAGGGCAGG+TGG | + | chr8.2:29128930-29128949 | MS.gene017661:intron | 60.0% | |
| TGAGGGTCTCTGCCTAAGGG+TGG | - | chr8.2:29129182-29129201 | None:intergenic | 60.0% | |
| !! | AGTGTTGGCCCTTCCTCGGT+TGG | - | chr8.2:29129941-29129960 | None:intergenic | 60.0% |
| GAGGGTCTCTGCCCAAGGGT+AGG | - | chr8.2:29129122-29129141 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 29127948 | 29130762 | 29127948 | ID=MS.gene017661 |
| chr8.2 | mRNA | 29127948 | 29130762 | 29127948 | ID=MS.gene017661.t1;Parent=MS.gene017661 |
| chr8.2 | exon | 29127948 | 29128090 | 29127948 | ID=MS.gene017661.t1.exon1;Parent=MS.gene017661.t1 |
| chr8.2 | CDS | 29127948 | 29128090 | 29127948 | ID=cds.MS.gene017661.t1;Parent=MS.gene017661.t1 |
| chr8.2 | exon | 29128197 | 29128300 | 29128197 | ID=MS.gene017661.t1.exon2;Parent=MS.gene017661.t1 |
| chr8.2 | CDS | 29128197 | 29128300 | 29128197 | ID=cds.MS.gene017661.t1;Parent=MS.gene017661.t1 |
| chr8.2 | exon | 29129597 | 29130041 | 29129597 | ID=MS.gene017661.t1.exon3;Parent=MS.gene017661.t1 |
| chr8.2 | CDS | 29129597 | 29130041 | 29129597 | ID=cds.MS.gene017661.t1;Parent=MS.gene017661.t1 |
| chr8.2 | exon | 29130606 | 29130762 | 29130606 | ID=MS.gene017661.t1.exon4;Parent=MS.gene017661.t1 |
| chr8.2 | CDS | 29130606 | 29130762 | 29130606 | ID=cds.MS.gene017661.t1;Parent=MS.gene017661.t1 |
| Gene Sequence |
| Protein sequence |
