Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017789.t1 | RHN47771.1 | 100 | 182 | 0 | 0 | 1 | 182 | 90 | 271 | 2.60E-72 | 281.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017789.t1 | Q9SLA2 | 90.3 | 175 | 17 | 0 | 7 | 181 | 4 | 178 | 1.0e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017789.t1 | G7KRP2 | 100.0 | 182 | 0 | 0 | 1 | 182 | 1 | 182 | 1.9e-72 | 281.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017789 | MS.gene014034 | PPI |
| MS.gene017789 | MS.gene38805 | PPI |
| MS.gene017789 | MS.gene39124 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017789.t1 | MTR_7g090330 | 100.000 | 182 | 0 | 0 | 1 | 182 | 1 | 182 | 6.65e-123 | 344 |
| MS.gene017789.t1 | MTR_4g072050 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.38e-23 | 90.1 |
| MS.gene017789.t1 | MTR_8g076150 | 36.424 | 151 | 91 | 2 | 26 | 176 | 13 | 158 | 7.66e-23 | 89.7 |
| MS.gene017789.t1 | MTR_5g021690 | 35.032 | 157 | 96 | 3 | 20 | 176 | 8 | 158 | 1.84e-22 | 89.0 |
| MS.gene017789.t1 | MTR_4g010220 | 71.930 | 57 | 11 | 1 | 1 | 57 | 1 | 52 | 1.08e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017789.t1 | AT2G25610 | 92.000 | 175 | 14 | 0 | 7 | 181 | 4 | 178 | 4.61e-111 | 314 |
| MS.gene017789.t1 | AT2G25610 | 92.000 | 175 | 14 | 0 | 7 | 181 | 53 | 227 | 7.24e-111 | 315 |
| MS.gene017789.t1 | AT4G32530 | 93.023 | 172 | 12 | 0 | 10 | 181 | 9 | 180 | 1.27e-110 | 313 |
| MS.gene017789.t1 | AT4G32530 | 79.208 | 202 | 12 | 1 | 10 | 181 | 9 | 210 | 2.18e-103 | 296 |
| MS.gene017789.t1 | AT1G19910 | 35.669 | 157 | 95 | 3 | 20 | 176 | 9 | 159 | 6.16e-23 | 90.1 |
| MS.gene017789.t1 | AT1G75630 | 35.669 | 157 | 95 | 3 | 20 | 176 | 10 | 160 | 6.45e-23 | 90.1 |
| MS.gene017789.t1 | AT4G38920 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene017789.t1 | AT4G34720 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene017789.t1 | AT2G16510 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene017789.t1 | AT4G38920 | 37.226 | 137 | 81 | 2 | 40 | 176 | 1 | 132 | 5.86e-22 | 86.7 |
| MS.gene017789.t1 | AT4G34720 | 37.226 | 137 | 81 | 2 | 40 | 176 | 5 | 136 | 8.13e-22 | 86.7 |
| MS.gene017789.t1 | AT1G75630 | 29.843 | 191 | 94 | 5 | 20 | 176 | 10 | 194 | 5.39e-16 | 72.8 |
| MS.gene017789.t1 | AT1G19910 | 31.624 | 117 | 74 | 3 | 20 | 136 | 9 | 119 | 8.25e-11 | 57.4 |
Find 33 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATAGATACTTGATTT+TGG | 0.177979 | 7.3:+18729221 | None:intergenic |
| GGTAGTGCGCTTGGCCTATT+TGG | 0.238231 | 7.3:-18728923 | MS.gene017789:CDS |
| TATCCAGCTCTAAGAGATTC+TGG | 0.324274 | 7.3:+18729200 | None:intergenic |
| GGATATGCAATCTTTGCTTC+TGG | 0.326193 | 7.3:-18729182 | MS.gene017789:CDS |
| TGTGAAGCTGTTGCTATATA+TGG | 0.352411 | 7.3:-18729287 | MS.gene017789:CDS |
| ATTCTTGTGATTGAGATCTT+TGG | 0.353130 | 7.3:-18728944 | MS.gene017789:CDS |
| GGCCTATTTGGAGTTATTGT+TGG | 0.370654 | 7.3:-18728911 | MS.gene017789:CDS |
| TTGCAGCGCATTCAAGCTCT+TGG | 0.376310 | 7.3:-18732384 | MS.gene017789:CDS |
| TTTGCTTCTGGACTTATTGT+GGG | 0.379757 | 7.3:-18729170 | MS.gene017789:CDS |
| AGGTTGTGTGTAGGCATAAT+TGG | 0.380831 | 7.3:-18729016 | MS.gene017789:CDS |
| TTCCAACAATAACTCCAAAT+AGG | 0.387180 | 7.3:+18728909 | None:intergenic |
| CTTTGCTTCTGGACTTATTG+TGG | 0.393040 | 7.3:-18729171 | MS.gene017789:CDS |
| GGCGATACCGATTGCGGAAA+AGG | 0.405375 | 7.3:+18732330 | None:intergenic |
| CTTGGGCTGCAGCACTCGTC+AGG | 0.412435 | 7.3:-18732366 | MS.gene017789:CDS |
| TCTCCGTTCTCGGCGCTGCT+TGG | 0.425603 | 7.3:-18732294 | MS.gene017789:intron |
| GCTTCGCAAATCTTGTTTGT+GGG | 0.438334 | 7.3:-18729148 | MS.gene017789:intron |
| TGCAGCGCATTCAAGCTCTT+GGG | 0.466822 | 7.3:-18732383 | MS.gene017789:CDS |
| TCTATCGGTGTCTCCGTTCT+CGG | 0.467994 | 7.3:-18732304 | MS.gene017789:CDS |
| GAGATCTTTGGTAGTGCGCT+TGG | 0.473123 | 7.3:-18728932 | MS.gene017789:CDS |
| TTTGATCGGTGCTGCTATCA+AGG | 0.480937 | 7.3:-18732161 | MS.gene017789:CDS |
| ATCGGTATCGCCGTCTCTAT+CGG | 0.483284 | 7.3:-18732319 | MS.gene017789:CDS |
| CCGATTGCGGAAAAGGTGTA+TGG | 0.489744 | 7.3:+18732337 | None:intergenic |
| GGCTTCGCAAATCTTGTTTG+TGG | 0.492697 | 7.3:-18729149 | MS.gene017789:CDS |
| GAACCAGAATCTCTTAGAGC+TGG | 0.512261 | 7.3:-18729203 | MS.gene017789:CDS |
| TGTTGTTGCAGGTTGTGTGT+AGG | 0.535435 | 7.3:-18729025 | MS.gene017789:intron |
| TGAAGGGGAATTTACATCAC+CGG | 0.569427 | 7.3:-18732190 | MS.gene017789:intron |
| ATCACCGGTAGTAGTTTGAT+CGG | 0.575017 | 7.3:-18732175 | MS.gene017789:CDS |
| TTACCAAGCAGCGCCGAGAA+CGG | 0.608209 | 7.3:+18732291 | None:intergenic |
| AGCACCGATCAAACTACTAC+CGG | 0.613839 | 7.3:+18732171 | None:intergenic |
| AACGGAGACACCGATAGAGA+CGG | 0.614106 | 7.3:+18732309 | None:intergenic |
| GTGCTGCTATCAAGGCTCCA+AGG | 0.615656 | 7.3:-18732153 | MS.gene017789:CDS |
| AGAGACGGCGATACCGATTG+CGG | 0.644220 | 7.3:+18732324 | None:intergenic |
| TTATGTCAGCTCAAGCAACA+TGG | 0.667422 | 7.3:-18728883 | MS.gene017789:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTCTTTCTTTTTT+TGG | + | chr7.3:18731391-18731410 | None:intergenic | 10.0% |
| !! | ACTAAAAAACACAAATTTAA+AGG | + | chr7.3:18729187-18729206 | None:intergenic | 15.0% |
| !! | ATGAAAATGATAAAGAAAAA+AGG | - | chr7.3:18729712-18729731 | MS.gene017789:intron | 15.0% |
| !! | TAAATATCACATAAAATACA+GGG | + | chr7.3:18731763-18731782 | None:intergenic | 15.0% |
| !! | TACAATACATTTCTTAAAAA+AGG | + | chr7.3:18730155-18730174 | None:intergenic | 15.0% |
| !! | TTATATAAAATACACAAAGA+CGG | + | chr7.3:18730003-18730022 | None:intergenic | 15.0% |
| !!! | ATGTAAATGTTTTACTTTTT+TGG | - | chr7.3:18729484-18729503 | MS.gene017789:intron | 15.0% |
| !!! | TTTTTAAGAAATGTATTGTA+GGG | - | chr7.3:18730155-18730174 | MS.gene017789:intron | 15.0% |
| !!! | TTTTTTAAGAAATGTATTGT+AGG | - | chr7.3:18730154-18730173 | MS.gene017789:intron | 15.0% |
| !! | AAATAATGAGACATCAAAAT+AGG | - | chr7.3:18729912-18729931 | MS.gene017789:intron | 20.0% |
| !! | AAGTAAAACATTTACATCAA+AGG | + | chr7.3:18729481-18729500 | None:intergenic | 20.0% |
| !! | AATACAAACTTAAACGTAAA+AGG | + | chr7.3:18731849-18731868 | None:intergenic | 20.0% |
| !! | AATCAGGAAAAAATTATTGA+GGG | - | chr7.3:18729879-18729898 | MS.gene017789:intron | 20.0% |
| !! | ACAATAAAATCTTGTATGTA+TGG | + | chr7.3:18730814-18730833 | None:intergenic | 20.0% |
| !! | ATGTTTAATGCTTAATATCA+TGG | - | chr7.3:18729378-18729397 | MS.gene017789:intron | 20.0% |
| !! | CTAAATATCACATAAAATAC+AGG | + | chr7.3:18731764-18731783 | None:intergenic | 20.0% |
| !! | TAAACAACAGATTCAAATAA+CGG | + | chr7.3:18729052-18729071 | None:intergenic | 20.0% |
| !!! | AAAATGTTTACTTTTGGATT+TGG | - | chr7.3:18730337-18730356 | MS.gene017789:intron | 20.0% |
| !!! | AAACAAGTGAAATAATTTTG+TGG | - | chr7.3:18731137-18731156 | MS.gene017789:intron | 20.0% |
| !!! | AAGAGATAATTTGATTTGAA+AGG | + | chr7.3:18729028-18729047 | None:intergenic | 20.0% |
| !!! | AAGTAGAAAATGTTTACTTT+TGG | - | chr7.3:18730331-18730350 | MS.gene017789:intron | 20.0% |
| !!! | AGAGATAATTTGATTTGAAA+GGG | + | chr7.3:18729027-18729046 | None:intergenic | 20.0% |
| !!! | TGTAAAGAATTACCTAATTT+TGG | + | chr7.3:18730941-18730960 | None:intergenic | 20.0% |
| !!! | TGTATTTTAAAAAGCTCTAT+TGG | - | chr7.3:18731540-18731559 | MS.gene017789:intron | 20.0% |
| ! | AAATGAGGAAGTTAATTACT+AGG | - | chr7.3:18729425-18729444 | MS.gene017789:intron | 25.0% |
| ! | AATAATTGAGTATGTAGAAC+AGG | + | chr7.3:18732224-18732243 | None:intergenic | 25.0% |
| ! | AGGGGAAAATTGAAAAAAAT+AGG | + | chr7.3:18729008-18729027 | None:intergenic | 25.0% |
| ! | ATCAGGAAAAAATTATTGAG+GGG | - | chr7.3:18729880-18729899 | MS.gene017789:intron | 25.0% |
| ! | ATTGCTTCAGAAAAATGTTT+AGG | - | chr7.3:18730629-18730648 | MS.gene017789:intron | 25.0% |
| ! | CAAAGTGATACTCTAATTAT+TGG | - | chr7.3:18731329-18731348 | MS.gene017789:intron | 25.0% |
| ! | GAATATTTCCGTAAATTCAT+GGG | - | chr7.3:18731289-18731308 | MS.gene017789:intron | 25.0% |
| ! | GAATCAGGAAAAAATTATTG+AGG | - | chr7.3:18729878-18729897 | MS.gene017789:intron | 25.0% |
| ! | GATACTTGTAGTAATTAAGT+CGG | - | chr7.3:18730890-18730909 | MS.gene017789:intron | 25.0% |
| ! | GCATAATTTAATGAAGTATG+TGG | + | chr7.3:18730406-18730425 | None:intergenic | 25.0% |
| ! | GCTAAACAAATGGTTAATTA+AGG | - | chr7.3:18731730-18731749 | MS.gene017789:intron | 25.0% |
| ! | GCTCATAATAAATGATCATT+TGG | - | chr7.3:18729643-18729662 | MS.gene017789:intron | 25.0% |
| ! | GGGGAAAATTGAAAAAAATA+GGG | + | chr7.3:18729007-18729026 | None:intergenic | 25.0% |
| ! | GTTACTTGTAGTAATTAAGT+CGG | - | chr7.3:18730868-18730887 | MS.gene017789:intron | 25.0% |
| ! | TGAATATTTCCGTAAATTCA+TGG | - | chr7.3:18731288-18731307 | MS.gene017789:intron | 25.0% |
| ! | TTCCAGAAACAAATTCTATT+TGG | + | chr7.3:18730965-18730984 | None:intergenic | 25.0% |
| ! | TTGTTTATGTAATGGTTGAA+GGG | - | chr7.3:18729065-18729084 | MS.gene017789:intron | 25.0% |
| !! | AACCAAATAGAATTTGTTTC+TGG | - | chr7.3:18730960-18730979 | MS.gene017789:intron | 25.0% |
| !! | AGTAAACATTTTCTACTTAG+CGG | + | chr7.3:18730329-18730348 | None:intergenic | 25.0% |
| !! | TACATACCTAATGAGATTTT+TGG | + | chr7.3:18729151-18729170 | None:intergenic | 25.0% |
| !! | TCACAATACTGTTTTATAGA+AGG | - | chr7.3:18730556-18730575 | MS.gene017789:intron | 25.0% |
| !! | TGAATCTGTTGTTTATGTAA+TGG | - | chr7.3:18729057-18729076 | MS.gene017789:intron | 25.0% |
| !! | TTATTTTCCTACAGAACAAT+TGG | + | chr7.3:18729811-18729830 | None:intergenic | 25.0% |
| !!! | ATTCTTTCTTTTTTTGGTCA+AGG | + | chr7.3:18731385-18731404 | None:intergenic | 25.0% |
| !!! | CTAGTTTCTTTTTAGTTGAA+AGG | - | chr7.3:18729402-18729421 | MS.gene017789:intron | 25.0% |
| !!! | GAGATAATTTGATTTGAAAG+GGG | + | chr7.3:18729026-18729045 | None:intergenic | 25.0% |
| !!! | GGATAATATTCACTTTTGAT+TGG | - | chr7.3:18730911-18730930 | MS.gene017789:intron | 25.0% |
| !!! | TCAATTATTTTTGTTGTTGC+AGG | - | chr7.3:18732235-18732254 | MS.gene017789:intron | 25.0% |
| !!! | TTTTTAGTTGAAAGGAAATG+AGG | - | chr7.3:18729410-18729429 | MS.gene017789:intron | 25.0% |
| AAAGGAATTGTTATAGAGCT+TGG | - | chr7.3:18729331-18729350 | MS.gene017789:intron | 30.0% | |
| AAGCGATATTACTATGTATC+TGG | - | chr7.3:18729585-18729604 | MS.gene017789:intron | 30.0% | |
| AATCACGCAGAACAAAAATT+TGG | + | chr7.3:18730717-18730736 | None:intergenic | 30.0% | |
| ACAGTTCATAGTGAAAATCT+TGG | + | chr7.3:18731627-18731646 | None:intergenic | 30.0% | |
| AGATCTCAACACATAATCTT+TGG | - | chr7.3:18731469-18731488 | MS.gene017789:intron | 30.0% | |
| ATCATTTGGTCTGATATGAA+GGG | - | chr7.3:18729657-18729676 | MS.gene017789:intron | 30.0% | |
| ATTCTTGTGATTGAGATCTT+TGG | - | chr7.3:18732327-18732346 | MS.gene017789:CDS | 30.0% | |
| ATTTAATGAAGTATGTGGCT+TGG | + | chr7.3:18730401-18730420 | None:intergenic | 30.0% | |
| GATAAATGAGAAAGACTTGT+TGG | + | chr7.3:18730435-18730454 | None:intergenic | 30.0% | |
| GGTTAATAACTAATACTACC+AGG | + | chr7.3:18730793-18730812 | None:intergenic | 30.0% | |
| GTAACATGATATATACCAAG+TGG | - | chr7.3:18731178-18731197 | MS.gene017789:intron | 30.0% | |
| GTTGTTTATGTAATGGTTGA+AGG | - | chr7.3:18729064-18729083 | MS.gene017789:intron | 30.0% | |
| TCACTGTGTAATCATACAAT+TGG | - | chr7.3:18729765-18729784 | MS.gene017789:intron | 30.0% | |
| TCACTTCCAAAAATCTCATT+AGG | - | chr7.3:18729142-18729161 | MS.gene017789:intron | 30.0% | |
| TCAGGAAAAAATTATTGAGG+GGG | - | chr7.3:18729881-18729900 | MS.gene017789:intron | 30.0% | |
| TGTTTATGTAATGGTTGAAG+GGG | - | chr7.3:18729066-18729085 | MS.gene017789:intron | 30.0% | |
| TTCCAACAATAACTCCAAAT+AGG | + | chr7.3:18732365-18732384 | None:intergenic | 30.0% | |
| TTTGATGCAAGGAAAATCAA+AGG | + | chr7.3:18731428-18731447 | None:intergenic | 30.0% | |
| ! | CAAGTGAAATAATTTTGTGG+AGG | - | chr7.3:18731140-18731159 | MS.gene017789:intron | 30.0% |
| ! | CTCGATGATAAGTTTTACAA+TGG | - | chr7.3:18729225-18729244 | MS.gene017789:CDS | 30.0% |
| ! | CTGTTGATTGAACTTAGATA+GGG | - | chr7.3:18729265-18729284 | MS.gene017789:CDS | 30.0% |
| ! | GGTTCATAGATACTTGATTT+TGG | + | chr7.3:18732053-18732072 | None:intergenic | 30.0% |
| ! | GTTTTGCTTTGATTGATGTT+TGG | - | chr7.3:18729303-18729322 | MS.gene017789:intron | 30.0% |
| ! | TCTGTTGATTGAACTTAGAT+AGG | - | chr7.3:18729264-18729283 | MS.gene017789:CDS | 30.0% |
| !! | AACCATTTGTTTAGCCTTAA+AGG | + | chr7.3:18731725-18731744 | None:intergenic | 30.0% |
| !! | AACCTTTAAGGCTAAACAAA+TGG | - | chr7.3:18731720-18731739 | MS.gene017789:intron | 30.0% |
| !! | ATGTTTACTTTTGGATTTGG+CGG | - | chr7.3:18730340-18730359 | MS.gene017789:intron | 30.0% |
| !! | TTGACTTTGACTTGACAATA+TGG | - | chr7.3:18731927-18731946 | MS.gene017789:intron | 30.0% |
| !!! | ATCTGTCATTTTTAGTGTTG+AGG | - | chr7.3:18729556-18729575 | MS.gene017789:intron | 30.0% |
| !!! | GTTACTTTTGTTGCTTTGTT+TGG | - | chr7.3:18730838-18730857 | MS.gene017789:intron | 30.0% |
| !!! | GTTTTGGTTATGTTTTACAG+AGG | - | chr7.3:18731509-18731528 | MS.gene017789:intron | 30.0% |
| !!! | TACTTTTTTGGCGACTTAAT+GGG | - | chr7.3:18729496-18729515 | MS.gene017789:intron | 30.0% |
| !!! | TTACTTTTTTGGCGACTTAA+TGG | - | chr7.3:18729495-18729514 | MS.gene017789:intron | 30.0% |
| !!! | TTTTCTGAAGCAATTGTTGA+GGG | + | chr7.3:18730623-18730642 | None:intergenic | 30.0% |
| !!! | TTTTTCTGAAGCAATTGTTG+AGG | + | chr7.3:18730624-18730643 | None:intergenic | 30.0% |
| AAAAAAGACCCAAAGGTCAA+TGG | - | chr7.3:18731018-18731037 | MS.gene017789:intron | 35.0% | |
| AAAAAATTATTGAGGGGGGT+GGG | - | chr7.3:18729886-18729905 | MS.gene017789:intron | 35.0% | |
| AAAGCATGGTAAAGTGATTG+TGG | - | chr7.3:18731445-18731464 | MS.gene017789:intron | 35.0% | |
| AAATACACAAAGACGGAACT+AGG | + | chr7.3:18729996-18730015 | None:intergenic | 35.0% | |
| AACGTGAGATTCTTACATGA+TGG | + | chr7.3:18731694-18731713 | None:intergenic | 35.0% | |
| AGAATTCTCATGGAGAATGT+AGG | - | chr7.3:18732184-18732203 | MS.gene017789:CDS | 35.0% | |
| AGCTATCAAAAAAGACCCAA+AGG | - | chr7.3:18731011-18731030 | MS.gene017789:intron | 35.0% | |
| ATTGAGTATGTAGAACAGGA+TGG | + | chr7.3:18732220-18732239 | None:intergenic | 35.0% | |
| ATTGTTGATCGAGCTCAAAA+TGG | - | chr7.3:18730214-18730233 | MS.gene017789:intron | 35.0% | |
| ATTTCCGTAAATTCATGGGT+TGG | - | chr7.3:18731293-18731312 | MS.gene017789:intron | 35.0% | |
| CAGGAAAAAATTATTGAGGG+GGG | - | chr7.3:18729882-18729901 | MS.gene017789:intron | 35.0% | |
| CATCTTCACAAGAATTCTCA+TGG | - | chr7.3:18732174-18732193 | MS.gene017789:CDS | 35.0% | |
| CTACATCAATTAAACGACAC+TGG | + | chr7.3:18730761-18730780 | None:intergenic | 35.0% | |
| GAATTCTCATGGAGAATGTA+GGG | - | chr7.3:18732185-18732204 | MS.gene017789:CDS | 35.0% | |
| GATCATTTGGTCTGATATGA+AGG | - | chr7.3:18729656-18729675 | MS.gene017789:intron | 35.0% | |
| TATCCCAACCCATGAATTTA+CGG | + | chr7.3:18731300-18731319 | None:intergenic | 35.0% | |
| TATGTAGAACAGGATGGATA+AGG | + | chr7.3:18732214-18732233 | None:intergenic | 35.0% | |
| TGATTACACAGTGAGTTTAG+TGG | + | chr7.3:18729759-18729778 | None:intergenic | 35.0% | |
| TGTGAAGCTGTTGCTATATA+TGG | - | chr7.3:18731984-18732003 | MS.gene017789:intron | 35.0% | |
| TTAGCGGTTCTCATGATAAA+AGG | + | chr7.3:18730313-18730332 | None:intergenic | 35.0% | |
| TTGATTGGCACACCAAAATT+AGG | - | chr7.3:18730926-18730945 | MS.gene017789:intron | 35.0% | |
| TTGCTTTGATTGATGTTTGG+AGG | - | chr7.3:18729306-18729325 | MS.gene017789:intron | 35.0% | |
| TTGTGAAGATGTGAATATGC+AGG | + | chr7.3:18732165-18732184 | None:intergenic | 35.0% | |
| TTTCCGTAAATTCATGGGTT+GGG | - | chr7.3:18731294-18731313 | MS.gene017789:intron | 35.0% | |
| TTTGCTTCTGGACTTATTGT+GGG | - | chr7.3:18732101-18732120 | MS.gene017789:intron | 35.0% | |
| ! | AACACATAATCTTTGGCTTC+TGG | - | chr7.3:18731476-18731495 | MS.gene017789:intron | 35.0% |
| ! | AAGAATTTTCACGAAGAGAG+AGG | + | chr7.3:18732313-18732332 | None:intergenic | 35.0% |
| ! | ATTTTCCTTGCATCAAAGCA+TGG | - | chr7.3:18731431-18731450 | MS.gene017789:intron | 35.0% |
| ! | CACGTTTTCTCAAACCTTTA+AGG | - | chr7.3:18731708-18731727 | MS.gene017789:intron | 35.0% |
| ! | TTACATTTGAGTGTTGTGAG+TGG | - | chr7.3:18731816-18731835 | MS.gene017789:intron | 35.0% |
| !! | AGATTTTTGGAAGTGATCCT+TGG | + | chr7.3:18729138-18729157 | None:intergenic | 35.0% |
| !! | GTTCTGCGTGATTTGTTTAA+AGG | - | chr7.3:18730724-18730743 | MS.gene017789:intron | 35.0% |
| !! | TATTGGTGTGTGTTTGGTTT+TGG | - | chr7.3:18731557-18731576 | MS.gene017789:intron | 35.0% |
| !! | TGTTTACTTTTGGATTTGGC+GGG | - | chr7.3:18730341-18730360 | MS.gene017789:intron | 35.0% |
| !! | TTTCTGAAGCAATTGTTGAG+GGG | + | chr7.3:18730622-18730641 | None:intergenic | 35.0% |
| !!! | GGTCTTTTTTGATAGCTTTC+TGG | + | chr7.3:18731008-18731027 | None:intergenic | 35.0% |
| !!! | TGTCATTTTTAGTGTTGAGG+AGG | - | chr7.3:18729559-18729578 | MS.gene017789:intron | 35.0% |
| AAGCTCTATTGGTGTGTGTT+TGG | - | chr7.3:18731551-18731570 | MS.gene017789:intron | 40.0% | |
| AGGTTGTGTGTAGGCATAAT+TGG | - | chr7.3:18732255-18732274 | MS.gene017789:intron | 40.0% | |
| ATCACCGGTAGTAGTTTGAT+CGG | - | chr7.3:18729096-18729115 | MS.gene017789:intron | 40.0% | |
| CTATGCATGTAACAGTGAGT+GGG | - | chr7.3:18730104-18730123 | MS.gene017789:intron | 40.0% | |
| CTTTACCATGCTTTGATGCA+AGG | + | chr7.3:18731439-18731458 | None:intergenic | 40.0% | |
| CTTTGCTTCTGGACTTATTG+TGG | - | chr7.3:18732100-18732119 | MS.gene017789:intron | 40.0% | |
| CTTTGGTCCAATTGTTCTGT+AGG | - | chr7.3:18729801-18729820 | MS.gene017789:intron | 40.0% | |
| GAAAAAATTATTGAGGGGGG+TGG | - | chr7.3:18729885-18729904 | MS.gene017789:intron | 40.0% | |
| GATTGATGTTTGGAGGAGAA+AGG | - | chr7.3:18729313-18729332 | MS.gene017789:intron | 40.0% | |
| GGATATGCAATCTTTGCTTC+TGG | - | chr7.3:18732089-18732108 | MS.gene017789:intron | 40.0% | |
| GTTCCAAATACAACCGTTTG+CGG | - | chr7.3:18731901-18731920 | MS.gene017789:intron | 40.0% | |
| TAAGCCAACCATTGACCTTT+GGG | + | chr7.3:18731029-18731048 | None:intergenic | 40.0% | |
| TCTATGCATGTAACAGTGAG+TGG | - | chr7.3:18730103-18730122 | MS.gene017789:intron | 40.0% | |
| TGAAGGGGAATTTACATCAC+CGG | - | chr7.3:18729081-18729100 | MS.gene017789:intron | 40.0% | |
| TTAAGCCAACCATTGACCTT+TGG | + | chr7.3:18731030-18731049 | None:intergenic | 40.0% | |
| TTACACAGTGAGTTTAGTGG+AGG | + | chr7.3:18729756-18729775 | None:intergenic | 40.0% | |
| TTATGTCAGCTCAAGCAACA+TGG | - | chr7.3:18732388-18732407 | MS.gene017789:CDS | 40.0% | |
| TTGATGTAGCTAACTTCACC+TGG | - | chr7.3:18730772-18730791 | MS.gene017789:intron | 40.0% | |
| ! | CCAACTACAATGCTACTTAG+CGG | + | chr7.3:18730251-18730270 | None:intergenic | 40.0% |
| ! | CGCTTTCTAATTTTGTCTGC+AGG | + | chr7.3:18732028-18732047 | None:intergenic | 40.0% |
| ! | CTAGCTCATTTGGTTTAGTG+TGG | - | chr7.3:18730478-18730497 | MS.gene017789:intron | 40.0% |
| ! | GCTTCGCAAATCTTGTTTGT+GGG | - | chr7.3:18732123-18732142 | MS.gene017789:intron | 40.0% |
| ! | GGCCTATTTGGAGTTATTGT+TGG | - | chr7.3:18732360-18732379 | MS.gene017789:CDS | 40.0% |
| ! | TTTGATAGCTTTCTGGTGTC+TGG | + | chr7.3:18731001-18731020 | None:intergenic | 40.0% |
| !! | TATCCAGCTCTAAGAGATTC+TGG | + | chr7.3:18732074-18732093 | None:intergenic | 40.0% |
| !! | TTCTGGTGTGTGTTTGGTTT+TGG | - | chr7.3:18731493-18731512 | MS.gene017789:intron | 40.0% |
| !! | TTTTTGGCGACTTAATGGGT+GGG | - | chr7.3:18729500-18729519 | MS.gene017789:intron | 40.0% |
| !!! | TTTTTTGGCGACTTAATGGG+TGG | - | chr7.3:18729499-18729518 | MS.gene017789:intron | 40.0% |
| AACCAAATGAGCTAGTGCAG+AGG | + | chr7.3:18730473-18730492 | None:intergenic | 45.0% | |
| AAGACCCAAAGGTCAATGGT+TGG | - | chr7.3:18731022-18731041 | MS.gene017789:intron | 45.0% | |
| ACCAAATGAGCTAGTGCAGA+GGG | + | chr7.3:18730472-18730491 | None:intergenic | 45.0% | |
| ACTATCACTCAGCTTCCACT+TGG | + | chr7.3:18731196-18731215 | None:intergenic | 45.0% | |
| ATGTCACTGGTACACCCAAA+TGG | + | chr7.3:18730512-18730531 | None:intergenic | 45.0% | |
| CCGCTAAGTAGCATTGTAGT+TGG | - | chr7.3:18730248-18730267 | MS.gene017789:intron | 45.0% | |
| GAACCAGAATCTCTTAGAGC+TGG | - | chr7.3:18732068-18732087 | MS.gene017789:intron | 45.0% | |
| GGTGTACCAGTGACATCAAT+CGG | - | chr7.3:18730516-18730535 | MS.gene017789:intron | 45.0% | |
| TGTTGTTGCAGGTTGTGTGT+AGG | - | chr7.3:18732246-18732265 | MS.gene017789:intron | 45.0% | |
| ! | AGTGTGGTTTGTCCTCCATT+TGG | - | chr7.3:18730494-18730513 | MS.gene017789:intron | 45.0% |
| ! | CAATGCTACTTAGCGGTAAC+TGG | + | chr7.3:18730244-18730263 | None:intergenic | 45.0% |
| ! | CCATACACCTTTTCCGCAAT+CGG | - | chr7.3:18728934-18728953 | MS.gene017789:CDS | 45.0% |
| ! | GGCTTCGCAAATCTTGTTTG+TGG | - | chr7.3:18732122-18732141 | MS.gene017789:intron | 45.0% |
| ! | GTGTGGTTTGTCCTCCATTT+GGG | - | chr7.3:18730495-18730514 | MS.gene017789:intron | 45.0% |
| ! | TCAAAGTCAAGTGCCGCAAA+CGG | + | chr7.3:18731917-18731936 | None:intergenic | 45.0% |
| ! | TGGACCAAAGTGCTTTGTTG+TGG | + | chr7.3:18729791-18729810 | None:intergenic | 45.0% |
| ! | TTGGCCACAACAAAGCACTT+TGG | - | chr7.3:18729784-18729803 | MS.gene017789:intron | 45.0% |
| ! | TTTGGCTTCTGGTGTGTGTT+TGG | - | chr7.3:18731487-18731506 | MS.gene017789:intron | 45.0% |
| !! | AGCACCGATCAAACTACTAC+CGG | + | chr7.3:18729103-18729122 | None:intergenic | 45.0% |
| !! | TTACTTTTGGATTTGGCGGG+TGG | - | chr7.3:18730344-18730363 | MS.gene017789:intron | 45.0% |
| !! | TTTGATCGGTGCTGCTATCA+AGG | - | chr7.3:18729110-18729129 | MS.gene017789:intron | 45.0% |
| AAATTATTGAGGGGGGTGGG+AGG | - | chr7.3:18729889-18729908 | MS.gene017789:intron | 50.0% | |
| AACGGAGACACCGATAGAGA+CGG | + | chr7.3:18728965-18728984 | None:intergenic | 50.0% | |
| AGACAGCCGATTGATGTCAC+TGG | + | chr7.3:18730525-18730544 | None:intergenic | 50.0% | |
| AGTGCAGAGGGAAGTTGACA+TGG | + | chr7.3:18730460-18730479 | None:intergenic | 50.0% | |
| ATCGGTATCGCCGTCTCTAT+CGG | - | chr7.3:18728952-18728971 | MS.gene017789:CDS | 50.0% | |
| GTGCCGCAAACGGTTGTATT+TGG | + | chr7.3:18731907-18731926 | None:intergenic | 50.0% | |
| TCACCACTGTGTCGTGTTAG+AGG | - | chr7.3:18729853-18729872 | MS.gene017789:intron | 50.0% | |
| TCACTGGTACACCCAAATGG+AGG | + | chr7.3:18730509-18730528 | None:intergenic | 50.0% | |
| TCCCTCTGCACTAGCTCATT+TGG | - | chr7.3:18730468-18730487 | MS.gene017789:intron | 50.0% | |
| TCTAACACGACACAGTGGTG+AGG | + | chr7.3:18729854-18729873 | None:intergenic | 50.0% | |
| TGCAGCGCATTCAAGCTCTT+GGG | - | chr7.3:18728888-18728907 | MS.gene017789:CDS | 50.0% | |
| TGCATGTAACAGTGAGTGGG+TGG | - | chr7.3:18730107-18730126 | MS.gene017789:intron | 50.0% | |
| TGGAACTATTGCTGCTGTGC+AGG | + | chr7.3:18731887-18731906 | None:intergenic | 50.0% | |
| TTGCAGCGCATTCAAGCTCT+TGG | - | chr7.3:18728887-18728906 | MS.gene017789:CDS | 50.0% | |
| ! | AAGCCTTATCCCACTCTAGG+TGG | + | chr7.3:18731085-18731104 | None:intergenic | 50.0% |
| ! | CCGATTGCGGAAAAGGTGTA+TGG | + | chr7.3:18728937-18728956 | None:intergenic | 50.0% |
| ! | GCTAAGCCTTATCCCACTCT+AGG | + | chr7.3:18731088-18731107 | None:intergenic | 50.0% |
| ! | TCTATCGGTGTCTCCGTTCT+CGG | - | chr7.3:18728967-18728986 | MS.gene017789:CDS | 50.0% |
| !! | GAGATCTTTGGTAGTGCGCT+TGG | - | chr7.3:18732339-18732358 | MS.gene017789:CDS | 50.0% |
| ACAGTGAGTGGGTGGTTGTC+TGG | - | chr7.3:18730115-18730134 | MS.gene017789:intron | 55.0% | |
| ACGCCACCTAGAGTGGGATA+AGG | - | chr7.3:18731079-18731098 | MS.gene017789:intron | 55.0% | |
| CAGTGAGTGGGTGGTTGTCT+GGG | - | chr7.3:18730116-18730135 | MS.gene017789:intron | 55.0% | |
| CCACTGTGTCGTGTTAGAGG+CGG | - | chr7.3:18729856-18729875 | MS.gene017789:intron | 55.0% | |
| GGTAGTGCGCTTGGCCTATT+TGG | - | chr7.3:18732348-18732367 | MS.gene017789:CDS | 55.0% | |
| GTCGTGTTAGAGGCGGAATC+AGG | - | chr7.3:18729863-18729882 | MS.gene017789:intron | 55.0% | |
| TATCCCACTCTAGGTGGCGT+CGG | + | chr7.3:18731079-18731098 | None:intergenic | 55.0% | |
| ! | AGAGACGGCGATACCGATTG+CGG | + | chr7.3:18728950-18728969 | None:intergenic | 55.0% |
| ! | GGCGATACCGATTGCGGAAA+AGG | + | chr7.3:18728944-18728963 | None:intergenic | 55.0% |
| ! | GTGCTGCTATCAAGGCTCCA+AGG | - | chr7.3:18729118-18729137 | MS.gene017789:intron | 55.0% |
| ! | TTACCAAGCAGCGCCGAGAA+CGG | + | chr7.3:18728983-18729002 | None:intergenic | 55.0% |
| CCGCCTCTAACACGACACAG+TGG | + | chr7.3:18729859-18729878 | None:intergenic | 60.0% | |
| TAGCCGACGCCACCTAGAGT+GGG | - | chr7.3:18731073-18731092 | MS.gene017789:intron | 60.0% | |
| CTTGGGCTGCAGCACTCGTC+AGG | - | chr7.3:18728905-18728924 | MS.gene017789:CDS | 65.0% | |
| GTAGCCGACGCCACCTAGAG+TGG | - | chr7.3:18731072-18731091 | MS.gene017789:intron | 65.0% | |
| TCTCCGTTCTCGGCGCTGCT+TGG | - | chr7.3:18728977-18728996 | MS.gene017789:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 18728868 | 18732425 | 18728868 | ID=MS.gene017789 |
| chr7.3 | mRNA | 18728868 | 18732425 | 18728868 | ID=MS.gene017789.t1;Parent=MS.gene017789 |
| chr7.3 | exon | 18732295 | 18732425 | 18732295 | ID=MS.gene017789.t1.exon1;Parent=MS.gene017789.t1 |
| chr7.3 | CDS | 18732295 | 18732425 | 18732295 | ID=cds.MS.gene017789.t1;Parent=MS.gene017789.t1 |
| chr7.3 | exon | 18732130 | 18732207 | 18732130 | ID=MS.gene017789.t1.exon2;Parent=MS.gene017789.t1 |
| chr7.3 | CDS | 18732130 | 18732207 | 18732130 | ID=cds.MS.gene017789.t1;Parent=MS.gene017789.t1 |
| chr7.3 | exon | 18729149 | 18729319 | 18729149 | ID=MS.gene017789.t1.exon3;Parent=MS.gene017789.t1 |
| chr7.3 | CDS | 18729149 | 18729319 | 18729149 | ID=cds.MS.gene017789.t1;Parent=MS.gene017789.t1 |
| chr7.3 | exon | 18728868 | 18729036 | 18728868 | ID=MS.gene017789.t1.exon4;Parent=MS.gene017789.t1 |
| chr7.3 | CDS | 18728868 | 18729036 | 18728868 | ID=cds.MS.gene017789.t1;Parent=MS.gene017789.t1 |
| Gene Sequence |
| Protein sequence |
