Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39124.t1 | RHN47771.1 | 100 | 182 | 0 | 0 | 1 | 182 | 90 | 271 | 2.60E-72 | 281.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39124.t1 | Q9SLA2 | 90.3 | 175 | 17 | 0 | 7 | 181 | 4 | 178 | 1.0e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39124.t1 | G7KRP2 | 100.0 | 182 | 0 | 0 | 1 | 182 | 1 | 182 | 1.9e-72 | 281.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene39124 | 0.812399 | 4.32E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene39124 | 0.824495 | 7.83E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene39124 | 0.820739 | 5.85E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene39124 | 0.818638 | 1.77E-52 | -1.69E-46 |
| MS.gene050224 | MS.gene39124 | 0.815344 | 9.70E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene39124 | 0.848199 | 7.14E-60 | -1.69E-46 |
| MS.gene050384 | MS.gene39124 | 0.816195 | 6.27E-52 | -1.69E-46 |
| MS.gene050386 | MS.gene39124 | 0.818808 | 1.62E-52 | -1.69E-46 |
| MS.gene050414 | MS.gene39124 | 0.808097 | 3.66E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene39124 | 0.837111 | 6.30E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene39124 | 0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene39124 | 0.811535 | 6.67E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene39124 | 0.807362 | 5.24E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene39124 | 0.85389 | 1.77E-61 | -1.69E-46 |
| MS.gene050945 | MS.gene39124 | 0.801 | 1.11E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene39124 | 0.826454 | 2.69E-54 | -1.69E-46 |
| MS.gene051102 | MS.gene39124 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene39124 | 0.850758 | 1.38E-60 | -1.69E-46 |
| MS.gene051343 | MS.gene39124 | 0.861297 | 1.13E-63 | -1.69E-46 |
| MS.gene051381 | MS.gene39124 | 0.834189 | 3.46E-56 | -1.69E-46 |
| MS.gene051642 | MS.gene39124 | 0.82523 | 5.25E-54 | -1.69E-46 |
| MS.gene051724 | MS.gene39124 | 0.829286 | 5.61E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene39124 | 0.830341 | 3.10E-55 | -1.69E-46 |
| MS.gene052242 | MS.gene39124 | -0.83509 | 2.05E-56 | -1.69E-46 |
| MS.gene052307 | MS.gene39124 | 0.854783 | 9.78E-62 | -1.69E-46 |
| MS.gene052335 | MS.gene39124 | 0.820677 | 6.04E-53 | -1.69E-46 |
| MS.gene052370 | MS.gene39124 | 0.813093 | 3.05E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene39124 | 0.857678 | 1.39E-62 | -1.69E-46 |
| MS.gene052932 | MS.gene39124 | 0.803092 | 4.11E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene39124 | 0.80247 | 5.53E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene39124 | 0.801897 | 7.25E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene39124 | 0.852471 | 4.52E-61 | -1.69E-46 |
| MS.gene053564 | MS.gene39124 | 0.808556 | 2.92E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene39124 | 0.816522 | 5.29E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene39124 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene054558 | MS.gene39124 | 0.807593 | 4.69E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene39124 | 0.834288 | 3.27E-56 | -1.69E-46 |
| MS.gene056097 | MS.gene39124 | 0.861563 | 9.40E-64 | -1.69E-46 |
| MS.gene056181 | MS.gene39124 | 0.834533 | 2.84E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene39124 | 0.81803 | 2.42E-52 | -1.69E-46 |
| MS.gene056390 | MS.gene39124 | 0.803846 | 2.87E-49 | -1.69E-46 |
| MS.gene056578 | MS.gene39124 | 0.826771 | 2.26E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene39124 | 0.825373 | 4.86E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene39124 | 0.814568 | 1.44E-51 | -1.69E-46 |
| MS.gene056881 | MS.gene39124 | 0.809856 | 1.54E-50 | -1.69E-46 |
| MS.gene056992 | MS.gene39124 | 0.803076 | 4.14E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene39124 | 0.842611 | 2.33E-58 | -1.69E-46 |
| MS.gene058055 | MS.gene39124 | 0.822308 | 2.54E-53 | -1.69E-46 |
| MS.gene058638 | MS.gene39124 | 0.821161 | 4.68E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene39124 | 0.823927 | 1.06E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene39124 | 0.812613 | 3.88E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene39124 | 0.816703 | 4.82E-52 | -1.69E-46 |
| MS.gene059050 | MS.gene39124 | 0.81025 | 1.27E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene39124 | 0.814141 | 1.79E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene39124 | 0.840421 | 8.79E-58 | -1.69E-46 |
| MS.gene059965 | MS.gene39124 | 0.816398 | 5.64E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene39124 | 0.838997 | 2.06E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene39124 | 0.805303 | 1.42E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene39124 | 0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene39124 | 0.811243 | 7.72E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene39124 | 0.82472 | 6.93E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014034 | MS.gene39124 | PPI |
| MS.gene017789 | MS.gene39124 | PPI |
| MS.gene39124 | MS.gene38805 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39124.t1 | MTR_7g090330 | 100.000 | 182 | 0 | 0 | 1 | 182 | 1 | 182 | 6.65e-123 | 344 |
| MS.gene39124.t1 | MTR_4g072050 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.38e-23 | 90.1 |
| MS.gene39124.t1 | MTR_8g076150 | 36.424 | 151 | 91 | 2 | 26 | 176 | 13 | 158 | 7.66e-23 | 89.7 |
| MS.gene39124.t1 | MTR_5g021690 | 35.032 | 157 | 96 | 3 | 20 | 176 | 8 | 158 | 1.84e-22 | 89.0 |
| MS.gene39124.t1 | MTR_4g010220 | 71.930 | 57 | 11 | 1 | 1 | 57 | 1 | 52 | 1.08e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39124.t1 | AT2G25610 | 92.000 | 175 | 14 | 0 | 7 | 181 | 4 | 178 | 4.61e-111 | 314 |
| MS.gene39124.t1 | AT2G25610 | 92.000 | 175 | 14 | 0 | 7 | 181 | 53 | 227 | 7.24e-111 | 315 |
| MS.gene39124.t1 | AT4G32530 | 93.023 | 172 | 12 | 0 | 10 | 181 | 9 | 180 | 1.27e-110 | 313 |
| MS.gene39124.t1 | AT4G32530 | 79.208 | 202 | 12 | 1 | 10 | 181 | 9 | 210 | 2.18e-103 | 296 |
| MS.gene39124.t1 | AT1G19910 | 35.669 | 157 | 95 | 3 | 20 | 176 | 9 | 159 | 6.16e-23 | 90.1 |
| MS.gene39124.t1 | AT1G75630 | 35.669 | 157 | 95 | 3 | 20 | 176 | 10 | 160 | 6.45e-23 | 90.1 |
| MS.gene39124.t1 | AT4G38920 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene39124.t1 | AT4G34720 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene39124.t1 | AT2G16510 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene39124.t1 | AT4G38920 | 37.226 | 137 | 81 | 2 | 40 | 176 | 1 | 132 | 5.86e-22 | 86.7 |
| MS.gene39124.t1 | AT4G34720 | 37.226 | 137 | 81 | 2 | 40 | 176 | 5 | 136 | 8.13e-22 | 86.7 |
| MS.gene39124.t1 | AT1G75630 | 29.843 | 191 | 94 | 5 | 20 | 176 | 10 | 194 | 5.39e-16 | 72.8 |
| MS.gene39124.t1 | AT1G19910 | 31.624 | 117 | 74 | 3 | 20 | 136 | 9 | 119 | 8.25e-11 | 57.4 |
Find 33 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATAGATACTTGATTT+TGG | 0.177979 | 7.4:+18413457 | None:intergenic |
| GGTAGTGCGCTTGGCCTATT+TGG | 0.238231 | 7.4:-18413159 | MS.gene39124:CDS |
| TATCCAGCTCTAAGAGATTC+TGG | 0.324274 | 7.4:+18413436 | None:intergenic |
| GGATATGCAATCTTTGCTTC+TGG | 0.326193 | 7.4:-18413418 | MS.gene39124:CDS |
| TGTGAAGCTGTTGCTATATA+TGG | 0.352411 | 7.4:-18413523 | MS.gene39124:CDS |
| ATTCTTGTGATTGAGATCTT+TGG | 0.353130 | 7.4:-18413180 | MS.gene39124:CDS |
| GGCCTATTTGGAGTTATTGT+TGG | 0.370654 | 7.4:-18413147 | MS.gene39124:CDS |
| TTGCAGCGCATTCAAGCTCT+TGG | 0.376310 | 7.4:-18416619 | MS.gene39124:CDS |
| TTTGCTTCTGGACTTATTGT+GGG | 0.379757 | 7.4:-18413406 | MS.gene39124:CDS |
| AGGTTGTGTGTAGGCATAAT+TGG | 0.380831 | 7.4:-18413252 | MS.gene39124:CDS |
| TTCCAACAATAACTCCAAAT+AGG | 0.387180 | 7.4:+18413145 | None:intergenic |
| CTTTGCTTCTGGACTTATTG+TGG | 0.393040 | 7.4:-18413407 | MS.gene39124:CDS |
| GGCGATACCGATTGCGGAAA+AGG | 0.405375 | 7.4:+18416565 | None:intergenic |
| CTTGGGCTGCAGCACTCGTC+AGG | 0.412435 | 7.4:-18416601 | MS.gene39124:CDS |
| TCTCCGTTCTCGGCGCTGCT+TGG | 0.425603 | 7.4:-18416529 | MS.gene39124:intron |
| GCTTCGCAAATCTTGTTTGT+GGG | 0.438334 | 7.4:-18413384 | MS.gene39124:intron |
| TGCAGCGCATTCAAGCTCTT+GGG | 0.466822 | 7.4:-18416618 | MS.gene39124:CDS |
| TCTATCGGTGTCTCCGTTCT+CGG | 0.467994 | 7.4:-18416539 | MS.gene39124:CDS |
| GAGATCTTTGGTAGTGCGCT+TGG | 0.473123 | 7.4:-18413168 | MS.gene39124:CDS |
| TTTGATCGGTGCTGCTATCA+AGG | 0.480937 | 7.4:-18416396 | MS.gene39124:CDS |
| ATCGGTATCGCCGTCTCTAT+CGG | 0.483284 | 7.4:-18416554 | MS.gene39124:CDS |
| CCGATTGCGGAAAAGGTGTA+TGG | 0.489744 | 7.4:+18416572 | None:intergenic |
| GGCTTCGCAAATCTTGTTTG+TGG | 0.492697 | 7.4:-18413385 | MS.gene39124:CDS |
| GAACCAGAATCTCTTAGAGC+TGG | 0.512261 | 7.4:-18413439 | MS.gene39124:CDS |
| TGTTGTTGCAGGTTGTGTGT+AGG | 0.535435 | 7.4:-18413261 | MS.gene39124:intron |
| TGAAGGGGAATTTACATCAC+CGG | 0.569427 | 7.4:-18416425 | MS.gene39124:intron |
| ATCACCGGTAGTAGTTTGAT+CGG | 0.575017 | 7.4:-18416410 | MS.gene39124:CDS |
| TTACCAAGCAGCGCCGAGAA+CGG | 0.602925 | 7.4:+18416526 | None:intergenic |
| AGCACCGATCAAACTACTAC+CGG | 0.613839 | 7.4:+18416406 | None:intergenic |
| AACGGAGACACCGATAGAGA+CGG | 0.614106 | 7.4:+18416544 | None:intergenic |
| GTGCTGCTATCAAGGCTCCA+AGG | 0.615656 | 7.4:-18416388 | MS.gene39124:CDS |
| AGAGACGGCGATACCGATTG+CGG | 0.644220 | 7.4:+18416559 | None:intergenic |
| TTATGTCAGCTCAAGCAACA+TGG | 0.667422 | 7.4:-18413119 | MS.gene39124:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAATCTTTCTTTTTT+TGG | + | chr7.4:18415626-18415645 | None:intergenic | 10.0% |
| !! | ACTAAAAAACACAAATTTAA+AGG | + | chr7.4:18413423-18413442 | None:intergenic | 15.0% |
| !! | ATGAAAATGATAAAGAAAAA+AGG | - | chr7.4:18413948-18413967 | MS.gene39124:intron | 15.0% |
| !! | TAAATATCACATAAAATACA+GGG | + | chr7.4:18415998-18416017 | None:intergenic | 15.0% |
| !! | TACAATACATTTCTTAAAAA+AGG | + | chr7.4:18414391-18414410 | None:intergenic | 15.0% |
| !!! | ATGTAAATGTTTTACTTTTT+TGG | - | chr7.4:18413720-18413739 | MS.gene39124:intron | 15.0% |
| !!! | TTTTTAAGAAATGTATTGTA+GGG | - | chr7.4:18414391-18414410 | MS.gene39124:intron | 15.0% |
| !!! | TTTTTTAAGAAATGTATTGT+AGG | - | chr7.4:18414390-18414409 | MS.gene39124:intron | 15.0% |
| !! | AAATAATGAGACATCAAAAT+AGG | - | chr7.4:18414148-18414167 | MS.gene39124:intron | 20.0% |
| !! | AAGTAAAACATTTACATCAA+AGG | + | chr7.4:18413717-18413736 | None:intergenic | 20.0% |
| !! | AATACAAACTTAAACGTAAA+AGG | + | chr7.4:18416084-18416103 | None:intergenic | 20.0% |
| !! | AATCAGGAAAAAATTATTGA+GGG | - | chr7.4:18414115-18414134 | MS.gene39124:intron | 20.0% |
| !! | ACAATAAAATCTTGTATGTA+TGG | + | chr7.4:18415049-18415068 | None:intergenic | 20.0% |
| !! | ATGTTTAATGCTTAATATCA+TGG | - | chr7.4:18413614-18413633 | MS.gene39124:intron | 20.0% |
| !! | CTAAATATCACATAAAATAC+AGG | + | chr7.4:18415999-18416018 | None:intergenic | 20.0% |
| !! | TAAACAACAGATTCAAATAA+CGG | + | chr7.4:18413288-18413307 | None:intergenic | 20.0% |
| !! | TTATATAAAATACACAGAGA+CGG | + | chr7.4:18414239-18414258 | None:intergenic | 20.0% |
| !!! | AAAATGTTTACTTTTGGATT+TGG | - | chr7.4:18414572-18414591 | MS.gene39124:intron | 20.0% |
| !!! | AAACAAGTGAAATAATTTTG+TGG | - | chr7.4:18415372-18415391 | MS.gene39124:intron | 20.0% |
| !!! | AAGAGATAATTTGATTTGAA+AGG | + | chr7.4:18413264-18413283 | None:intergenic | 20.0% |
| !!! | AAGTAGAAAATGTTTACTTT+TGG | - | chr7.4:18414566-18414585 | MS.gene39124:intron | 20.0% |
| !!! | AGAGATAATTTGATTTGAAA+GGG | + | chr7.4:18413263-18413282 | None:intergenic | 20.0% |
| !!! | TGTAAAGAATTACCTAATTT+TGG | + | chr7.4:18415176-18415195 | None:intergenic | 20.0% |
| !!! | TGTATTTTAAAAAGCTCTAT+TGG | - | chr7.4:18415775-18415794 | MS.gene39124:intron | 20.0% |
| ! | AAATGAGGAAGTTAATTACT+AGG | - | chr7.4:18413661-18413680 | MS.gene39124:intron | 25.0% |
| ! | AATAATTGAGTATGTAGAAC+AGG | + | chr7.4:18416459-18416478 | None:intergenic | 25.0% |
| ! | AGGGGAAAATTGAAAAAAAT+AGG | + | chr7.4:18413244-18413263 | None:intergenic | 25.0% |
| ! | ATCAGGAAAAAATTATTGAG+GGG | - | chr7.4:18414116-18414135 | MS.gene39124:intron | 25.0% |
| ! | ATTGCTTCAGAAAAATGTTT+AGG | - | chr7.4:18414864-18414883 | MS.gene39124:intron | 25.0% |
| ! | CAAAGTGATACTCTAATTAT+TGG | - | chr7.4:18415564-18415583 | MS.gene39124:intron | 25.0% |
| ! | GAATATTTCCGTAAATTCAT+GGG | - | chr7.4:18415524-18415543 | MS.gene39124:intron | 25.0% |
| ! | GAATCAGGAAAAAATTATTG+AGG | - | chr7.4:18414114-18414133 | MS.gene39124:intron | 25.0% |
| ! | GATACTTGTAGTAATTAAGT+CGG | - | chr7.4:18415125-18415144 | MS.gene39124:intron | 25.0% |
| ! | GCATAATTTAATGAAGTATG+TGG | + | chr7.4:18414641-18414660 | None:intergenic | 25.0% |
| ! | GCTAAACAAATGGTTAATTA+AGG | - | chr7.4:18415965-18415984 | MS.gene39124:intron | 25.0% |
| ! | GCTCATAATAAATGATCATT+TGG | - | chr7.4:18413879-18413898 | MS.gene39124:intron | 25.0% |
| ! | GGGAAAATTGAAAAAAATAG+GGG | + | chr7.4:18413242-18413261 | None:intergenic | 25.0% |
| ! | GGGGAAAATTGAAAAAAATA+GGG | + | chr7.4:18413243-18413262 | None:intergenic | 25.0% |
| ! | GTTACTTGTAGTAATTAAGT+CGG | - | chr7.4:18415103-18415122 | MS.gene39124:intron | 25.0% |
| ! | TGAATATTTCCGTAAATTCA+TGG | - | chr7.4:18415523-18415542 | MS.gene39124:intron | 25.0% |
| ! | TTCCAGAAACAAATTCTATT+TGG | + | chr7.4:18415200-18415219 | None:intergenic | 25.0% |
| ! | TTGTTTATGTAATGGTTGAA+GGG | - | chr7.4:18413301-18413320 | MS.gene39124:intron | 25.0% |
| !! | AACCAAATAGAATTTGTTTC+TGG | - | chr7.4:18415195-18415214 | MS.gene39124:intron | 25.0% |
| !! | AGTAAACATTTTCTACTTAG+CGG | + | chr7.4:18414564-18414583 | None:intergenic | 25.0% |
| !! | TACATACCTAATGAGATTTT+TGG | + | chr7.4:18413387-18413406 | None:intergenic | 25.0% |
| !! | TCACAATACTGTTTTATAGA+AGG | - | chr7.4:18414791-18414810 | MS.gene39124:intron | 25.0% |
| !! | TGAATCTGTTGTTTATGTAA+TGG | - | chr7.4:18413293-18413312 | MS.gene39124:intron | 25.0% |
| !! | TTATTTTCCTACAGAACAAT+TGG | + | chr7.4:18414047-18414066 | None:intergenic | 25.0% |
| !!! | AATCTTTCTTTTTTTGGTCA+AGG | + | chr7.4:18415620-18415639 | None:intergenic | 25.0% |
| !!! | CTAGTTTCTTTTTAGTTGAA+AGG | - | chr7.4:18413638-18413657 | MS.gene39124:intron | 25.0% |
| !!! | GAGATAATTTGATTTGAAAG+GGG | + | chr7.4:18413262-18413281 | None:intergenic | 25.0% |
| !!! | GGATAATATTCACTTTTGAT+TGG | - | chr7.4:18415146-18415165 | MS.gene39124:intron | 25.0% |
| !!! | TCAATTATTTTTGTTGTTGC+AGG | - | chr7.4:18416470-18416489 | MS.gene39124:intron | 25.0% |
| !!! | TTTTTAGTTGAAAGGAAATG+AGG | - | chr7.4:18413646-18413665 | MS.gene39124:intron | 25.0% |
| AAAGGAATTGTTATAGAGCT+TGG | - | chr7.4:18413567-18413586 | MS.gene39124:intron | 30.0% | |
| AACTATCAAAAAAGACCCAA+AGG | - | chr7.4:18415246-18415265 | MS.gene39124:intron | 30.0% | |
| AAGCGATATTACTATGTATC+TGG | - | chr7.4:18413821-18413840 | MS.gene39124:intron | 30.0% | |
| AATCACGCAGAACAAAAATT+TGG | + | chr7.4:18414952-18414971 | None:intergenic | 30.0% | |
| ACAGTTCATAGTGAAAATCT+TGG | + | chr7.4:18415862-18415881 | None:intergenic | 30.0% | |
| AGATCTCAACACATAATCTT+TGG | - | chr7.4:18415704-18415723 | MS.gene39124:intron | 30.0% | |
| ATCATTTGGTCTGATATGAA+GGG | - | chr7.4:18413893-18413912 | MS.gene39124:intron | 30.0% | |
| ATTCTTGTGATTGAGATCTT+TGG | - | chr7.4:18416562-18416581 | MS.gene39124:CDS | 30.0% | |
| ATTTAATGAAGTATGTGGCT+TGG | + | chr7.4:18414636-18414655 | None:intergenic | 30.0% | |
| GATAAATGAGAAAGACTTGT+TGG | + | chr7.4:18414670-18414689 | None:intergenic | 30.0% | |
| GTAACATGATATATACCAAG+TGG | - | chr7.4:18415413-18415432 | MS.gene39124:intron | 30.0% | |
| GTTGTTTATGTAATGGTTGA+AGG | - | chr7.4:18413300-18413319 | MS.gene39124:intron | 30.0% | |
| TCACTGTGTAATCATACAAT+TGG | - | chr7.4:18414001-18414020 | MS.gene39124:intron | 30.0% | |
| TCACTTCCAAAAATCTCATT+AGG | - | chr7.4:18413378-18413397 | MS.gene39124:intron | 30.0% | |
| TCAGGAAAAAATTATTGAGG+GGG | - | chr7.4:18414117-18414136 | MS.gene39124:intron | 30.0% | |
| TGTTTATGTAATGGTTGAAG+GGG | - | chr7.4:18413302-18413321 | MS.gene39124:intron | 30.0% | |
| TTCCAACAATAACTCCAAAT+AGG | + | chr7.4:18416600-18416619 | None:intergenic | 30.0% | |
| TTTGATGCAAGGAAAATCAA+AGG | + | chr7.4:18415663-18415682 | None:intergenic | 30.0% | |
| ! | CAAGTGAAATAATTTTGTGG+AGG | - | chr7.4:18415375-18415394 | MS.gene39124:intron | 30.0% |
| ! | CTCGATGATAAGTTTTACAA+TGG | - | chr7.4:18413461-18413480 | MS.gene39124:CDS | 30.0% |
| ! | CTGTTGATTGAACTTAGATA+GGG | - | chr7.4:18413501-18413520 | MS.gene39124:CDS | 30.0% |
| ! | GGTTCATAGATACTTGATTT+TGG | + | chr7.4:18416288-18416307 | None:intergenic | 30.0% |
| ! | GTTTTGCTTTGATTGATGTT+TGG | - | chr7.4:18413539-18413558 | MS.gene39124:intron | 30.0% |
| ! | TCTGTTGATTGAACTTAGAT+AGG | - | chr7.4:18413500-18413519 | MS.gene39124:CDS | 30.0% |
| !! | AACCATTTGTTTAGCCTTAA+AGG | + | chr7.4:18415960-18415979 | None:intergenic | 30.0% |
| !! | AACCTTTAAGGCTAAACAAA+TGG | - | chr7.4:18415955-18415974 | MS.gene39124:intron | 30.0% |
| !! | ATGTTTACTTTTGGATTTGG+CGG | - | chr7.4:18414575-18414594 | MS.gene39124:intron | 30.0% |
| !! | TTGACTTTGACTTGACAATA+TGG | - | chr7.4:18416162-18416181 | MS.gene39124:intron | 30.0% |
| !!! | ATCTGTCATTTTTAGTGTTG+AGG | - | chr7.4:18413792-18413811 | MS.gene39124:intron | 30.0% |
| !!! | GGTCTTTTTTGATAGTTTTC+TGG | + | chr7.4:18415243-18415262 | None:intergenic | 30.0% |
| !!! | GTTACTTTTGTTGCTTTGTT+TGG | - | chr7.4:18415073-18415092 | MS.gene39124:intron | 30.0% |
| !!! | GTTTTGGTTATGTTTTACAG+AGG | - | chr7.4:18415744-18415763 | MS.gene39124:intron | 30.0% |
| !!! | TACTTTTTTGGCGACTTAAT+GGG | - | chr7.4:18413732-18413751 | MS.gene39124:intron | 30.0% |
| !!! | TTACTTTTTTGGCGACTTAA+TGG | - | chr7.4:18413731-18413750 | MS.gene39124:intron | 30.0% |
| !!! | TTTTCTGAAGCAATTGTTGA+GGG | + | chr7.4:18414858-18414877 | None:intergenic | 30.0% |
| !!! | TTTTTCTGAAGCAATTGTTG+AGG | + | chr7.4:18414859-18414878 | None:intergenic | 30.0% |
| AAAAAAGACCCAAAGGTCAA+TGG | - | chr7.4:18415253-18415272 | MS.gene39124:intron | 35.0% | |
| AAAAAATTATTGAGGGGGGT+GGG | - | chr7.4:18414122-18414141 | MS.gene39124:intron | 35.0% | |
| AAAGCATGGTAAAGTGATTG+TGG | - | chr7.4:18415680-18415699 | MS.gene39124:intron | 35.0% | |
| AACGTGAGATTCTTACATGA+TGG | + | chr7.4:18415929-18415948 | None:intergenic | 35.0% | |
| AGAATTCTCATGGAGAATGT+AGG | - | chr7.4:18416419-18416438 | MS.gene39124:CDS | 35.0% | |
| ATTGAGTATGTAGAACAGGA+TGG | + | chr7.4:18416455-18416474 | None:intergenic | 35.0% | |
| ATTGTTGATCGAGCTCAAAA+TGG | - | chr7.4:18414449-18414468 | MS.gene39124:intron | 35.0% | |
| ATTTCCGTAAATTCATGGGT+TGG | - | chr7.4:18415528-18415547 | MS.gene39124:intron | 35.0% | |
| CAGGAAAAAATTATTGAGGG+GGG | - | chr7.4:18414118-18414137 | MS.gene39124:intron | 35.0% | |
| CATCTTCACAAGAATTCTCA+TGG | - | chr7.4:18416409-18416428 | MS.gene39124:CDS | 35.0% | |
| CTACATCAATTAAACGACAC+TGG | + | chr7.4:18414996-18415015 | None:intergenic | 35.0% | |
| GAATTCTCATGGAGAATGTA+GGG | - | chr7.4:18416420-18416439 | MS.gene39124:CDS | 35.0% | |
| GATCATTTGGTCTGATATGA+AGG | - | chr7.4:18413892-18413911 | MS.gene39124:intron | 35.0% | |
| GGTTAATAACTACTACTACC+AGG | + | chr7.4:18415028-18415047 | None:intergenic | 35.0% | |
| TATCCCAACCCATGAATTTA+CGG | + | chr7.4:18415535-18415554 | None:intergenic | 35.0% | |
| TATGTAGAACAGGATGGATA+AGG | + | chr7.4:18416449-18416468 | None:intergenic | 35.0% | |
| TGATTACACAGTGAGTTTAG+TGG | + | chr7.4:18413995-18414014 | None:intergenic | 35.0% | |
| TGTGAAGCTGTTGCTATATA+TGG | - | chr7.4:18416219-18416238 | MS.gene39124:intron | 35.0% | |
| TTAGCGGTTCTCATGATAAA+AGG | + | chr7.4:18414548-18414567 | None:intergenic | 35.0% | |
| TTGATTGGCACACCAAAATT+AGG | - | chr7.4:18415161-18415180 | MS.gene39124:intron | 35.0% | |
| TTGCTTTGATTGATGTTTGG+AGG | - | chr7.4:18413542-18413561 | MS.gene39124:intron | 35.0% | |
| TTGTGAAGATGTGAATATGC+AGG | + | chr7.4:18416400-18416419 | None:intergenic | 35.0% | |
| TTTCCGTAAATTCATGGGTT+GGG | - | chr7.4:18415529-18415548 | MS.gene39124:intron | 35.0% | |
| TTTGCTTCTGGACTTATTGT+GGG | - | chr7.4:18416336-18416355 | MS.gene39124:intron | 35.0% | |
| ! | AACACATAATCTTTGGCTTC+TGG | - | chr7.4:18415711-18415730 | MS.gene39124:intron | 35.0% |
| ! | AAGAATTTTCACGAAGAGAG+AGG | + | chr7.4:18416548-18416567 | None:intergenic | 35.0% |
| ! | ATTTTCCTTGCATCAAAGCA+TGG | - | chr7.4:18415666-18415685 | MS.gene39124:intron | 35.0% |
| ! | CACGTTTTCTCAAACCTTTA+AGG | - | chr7.4:18415943-18415962 | MS.gene39124:intron | 35.0% |
| ! | TTACATTTGAGTGTTGTGAG+TGG | - | chr7.4:18416051-18416070 | MS.gene39124:intron | 35.0% |
| !! | AGATTTTTGGAAGTGATCCT+TGG | + | chr7.4:18413374-18413393 | None:intergenic | 35.0% |
| !! | GTTCTGCGTGATTTGTTTAA+AGG | - | chr7.4:18414959-18414978 | MS.gene39124:intron | 35.0% |
| !! | TATTGGTGTGTGTTTGGTTT+TGG | - | chr7.4:18415792-18415811 | MS.gene39124:intron | 35.0% |
| !! | TGTTTACTTTTGGATTTGGC+GGG | - | chr7.4:18414576-18414595 | MS.gene39124:intron | 35.0% |
| !! | TTTCTGAAGCAATTGTTGAG+GGG | + | chr7.4:18414857-18414876 | None:intergenic | 35.0% |
| !! | TTTGATAGTTTTCTGGTGTC+TGG | + | chr7.4:18415236-18415255 | None:intergenic | 35.0% |
| !!! | TGTCATTTTTAGTGTTGAGG+AGG | - | chr7.4:18413795-18413814 | MS.gene39124:intron | 35.0% |
| AAATACACAGAGACGGAACT+AGG | + | chr7.4:18414232-18414251 | None:intergenic | 40.0% | |
| AAGCTCTATTGGTGTGTGTT+TGG | - | chr7.4:18415786-18415805 | MS.gene39124:intron | 40.0% | |
| AGGTTGTGTGTAGGCATAAT+TGG | - | chr7.4:18416490-18416509 | MS.gene39124:intron | 40.0% | |
| ATCACCGGTAGTAGTTTGAT+CGG | - | chr7.4:18413332-18413351 | MS.gene39124:intron | 40.0% | |
| CTATGCATGTAACAGTGAGT+GGG | - | chr7.4:18414340-18414359 | MS.gene39124:intron | 40.0% | |
| CTTTACCATGCTTTGATGCA+AGG | + | chr7.4:18415674-18415693 | None:intergenic | 40.0% | |
| CTTTGCTTCTGGACTTATTG+TGG | - | chr7.4:18416335-18416354 | MS.gene39124:intron | 40.0% | |
| CTTTGGTCCAATTGTTCTGT+AGG | - | chr7.4:18414037-18414056 | MS.gene39124:intron | 40.0% | |
| GAAAAAATTATTGAGGGGGG+TGG | - | chr7.4:18414121-18414140 | MS.gene39124:intron | 40.0% | |
| GATTGATGTTTGGAGGAGAA+AGG | - | chr7.4:18413549-18413568 | MS.gene39124:intron | 40.0% | |
| GGATATGCAATCTTTGCTTC+TGG | - | chr7.4:18416324-18416343 | MS.gene39124:intron | 40.0% | |
| GTTCCATATACAACCGTTTG+TGG | - | chr7.4:18416136-18416155 | MS.gene39124:intron | 40.0% | |
| TAAGCCAACCATTGACCTTT+GGG | + | chr7.4:18415264-18415283 | None:intergenic | 40.0% | |
| TCAAAGTCAAGTGCCACAAA+CGG | + | chr7.4:18416152-18416171 | None:intergenic | 40.0% | |
| TCTATGCATGTAACAGTGAG+TGG | - | chr7.4:18414339-18414358 | MS.gene39124:intron | 40.0% | |
| TGAAGGGGAATTTACATCAC+CGG | - | chr7.4:18413317-18413336 | MS.gene39124:intron | 40.0% | |
| TTAAGCCAACCATTGACCTT+TGG | + | chr7.4:18415265-18415284 | None:intergenic | 40.0% | |
| TTACACAGTGAGTTTAGTGG+AGG | + | chr7.4:18413992-18414011 | None:intergenic | 40.0% | |
| TTATGTCAGCTCAAGCAACA+TGG | - | chr7.4:18416623-18416642 | MS.gene39124:CDS | 40.0% | |
| TTGATGTAGCTAACTTCACC+TGG | - | chr7.4:18415007-18415026 | MS.gene39124:intron | 40.0% | |
| ! | CCAACTACAATGCTACTTAG+CGG | + | chr7.4:18414486-18414505 | None:intergenic | 40.0% |
| ! | CGCTTTCTAATTTTGTCTGC+AGG | + | chr7.4:18416263-18416282 | None:intergenic | 40.0% |
| ! | CTAGCTCATTTGGTTTAGTG+TGG | - | chr7.4:18414713-18414732 | MS.gene39124:intron | 40.0% |
| ! | GCTTCGCAAATCTTGTTTGT+GGG | - | chr7.4:18416358-18416377 | MS.gene39124:intron | 40.0% |
| ! | GGCCTATTTGGAGTTATTGT+TGG | - | chr7.4:18416595-18416614 | MS.gene39124:CDS | 40.0% |
| !! | TATCCAGCTCTAAGAGATTC+TGG | + | chr7.4:18416309-18416328 | None:intergenic | 40.0% |
| !! | TTCTGGTGTGTGTTTGGTTT+TGG | - | chr7.4:18415728-18415747 | MS.gene39124:intron | 40.0% |
| !! | TTTTTGGCGACTTAATGGGT+GGG | - | chr7.4:18413736-18413755 | MS.gene39124:intron | 40.0% |
| !!! | TTTTTTGGCGACTTAATGGG+TGG | - | chr7.4:18413735-18413754 | MS.gene39124:intron | 40.0% |
| AACCAAATGAGCTAGTGCAG+AGG | + | chr7.4:18414708-18414727 | None:intergenic | 45.0% | |
| AAGACCCAAAGGTCAATGGT+TGG | - | chr7.4:18415257-18415276 | MS.gene39124:intron | 45.0% | |
| ACCAAATGAGCTAGTGCAGA+GGG | + | chr7.4:18414707-18414726 | None:intergenic | 45.0% | |
| ACTATCACTCAGCTTCCACT+TGG | + | chr7.4:18415431-18415450 | None:intergenic | 45.0% | |
| ATGTCACTGGTACACCCAAA+TGG | + | chr7.4:18414747-18414766 | None:intergenic | 45.0% | |
| CCGCTAAGTAGCATTGTAGT+TGG | - | chr7.4:18414483-18414502 | MS.gene39124:intron | 45.0% | |
| GAACCAGAATCTCTTAGAGC+TGG | - | chr7.4:18416303-18416322 | MS.gene39124:intron | 45.0% | |
| GGTGTACCAGTGACATCAAT+CGG | - | chr7.4:18414751-18414770 | MS.gene39124:intron | 45.0% | |
| GTGCCACAAACGGTTGTATA+TGG | + | chr7.4:18416142-18416161 | None:intergenic | 45.0% | |
| TGTTGTTGCAGGTTGTGTGT+AGG | - | chr7.4:18416481-18416500 | MS.gene39124:intron | 45.0% | |
| ! | AGTGTGGTTTGTCCTCCATT+TGG | - | chr7.4:18414729-18414748 | MS.gene39124:intron | 45.0% |
| ! | CAATGCTACTTAGCGGTAAC+TGG | + | chr7.4:18414479-18414498 | None:intergenic | 45.0% |
| ! | CCATACACCTTTTCCGCAAT+CGG | - | chr7.4:18413170-18413189 | MS.gene39124:CDS | 45.0% |
| ! | GGCTTCGCAAATCTTGTTTG+TGG | - | chr7.4:18416357-18416376 | MS.gene39124:intron | 45.0% |
| ! | GTGTGGTTTGTCCTCCATTT+GGG | - | chr7.4:18414730-18414749 | MS.gene39124:intron | 45.0% |
| ! | TGGACCAAAGTGCTTTGTTG+TGG | + | chr7.4:18414027-18414046 | None:intergenic | 45.0% |
| ! | TTGGCCACAACAAAGCACTT+TGG | - | chr7.4:18414020-18414039 | MS.gene39124:intron | 45.0% |
| ! | TTTGGCTTCTGGTGTGTGTT+TGG | - | chr7.4:18415722-18415741 | MS.gene39124:intron | 45.0% |
| !! | AGCACCGATCAAACTACTAC+CGG | + | chr7.4:18413339-18413358 | None:intergenic | 45.0% |
| !! | TTACTTTTGGATTTGGCGGG+TGG | - | chr7.4:18414579-18414598 | MS.gene39124:intron | 45.0% |
| !! | TTTGATCGGTGCTGCTATCA+AGG | - | chr7.4:18413346-18413365 | MS.gene39124:intron | 45.0% |
| AAATTATTGAGGGGGGTGGG+AGG | - | chr7.4:18414125-18414144 | MS.gene39124:intron | 50.0% | |
| AACGGAGACACCGATAGAGA+CGG | + | chr7.4:18413201-18413220 | None:intergenic | 50.0% | |
| AGACAGCCGATTGATGTCAC+TGG | + | chr7.4:18414760-18414779 | None:intergenic | 50.0% | |
| AGTGCAGAGGGAAGTTGACA+TGG | + | chr7.4:18414695-18414714 | None:intergenic | 50.0% | |
| ATCGGTATCGCCGTCTCTAT+CGG | - | chr7.4:18413188-18413207 | MS.gene39124:CDS | 50.0% | |
| TCACCACTGTGTCGTGTTAG+AGG | - | chr7.4:18414089-18414108 | MS.gene39124:intron | 50.0% | |
| TCACTGGTACACCCAAATGG+AGG | + | chr7.4:18414744-18414763 | None:intergenic | 50.0% | |
| TCCCTCTGCACTAGCTCATT+TGG | - | chr7.4:18414703-18414722 | MS.gene39124:intron | 50.0% | |
| TCTAACACGACACAGTGGTG+AGG | + | chr7.4:18414090-18414109 | None:intergenic | 50.0% | |
| TGCAGCGCATTCAAGCTCTT+GGG | - | chr7.4:18413124-18413143 | MS.gene39124:CDS | 50.0% | |
| TGCATGTAACAGTGAGTGGG+TGG | - | chr7.4:18414343-18414362 | MS.gene39124:intron | 50.0% | |
| TGGAACTATTGCTGCTGTGC+AGG | + | chr7.4:18416122-18416141 | None:intergenic | 50.0% | |
| TTGCAGCGCATTCAAGCTCT+TGG | - | chr7.4:18413123-18413142 | MS.gene39124:CDS | 50.0% | |
| ! | AAGCCTTATCCCACTCTAGG+TGG | + | chr7.4:18415320-18415339 | None:intergenic | 50.0% |
| ! | CCGATTGCGGAAAAGGTGTA+TGG | + | chr7.4:18413173-18413192 | None:intergenic | 50.0% |
| ! | GCTAAGCCTTATCCCACTCT+AGG | + | chr7.4:18415323-18415342 | None:intergenic | 50.0% |
| ! | TCTATCGGTGTCTCCGTTCT+CGG | - | chr7.4:18413203-18413222 | MS.gene39124:CDS | 50.0% |
| !! | GAGATCTTTGGTAGTGCGCT+TGG | - | chr7.4:18416574-18416593 | MS.gene39124:CDS | 50.0% |
| ACAGTGAGTGGGTGGTTGTC+TGG | - | chr7.4:18414351-18414370 | MS.gene39124:intron | 55.0% | |
| ACGCCACCTAGAGTGGGATA+AGG | - | chr7.4:18415314-18415333 | MS.gene39124:intron | 55.0% | |
| CAGTGAGTGGGTGGTTGTCT+GGG | - | chr7.4:18414352-18414371 | MS.gene39124:intron | 55.0% | |
| CCACTGTGTCGTGTTAGAGG+CGG | - | chr7.4:18414092-18414111 | MS.gene39124:intron | 55.0% | |
| GGTAGTGCGCTTGGCCTATT+TGG | - | chr7.4:18416583-18416602 | MS.gene39124:CDS | 55.0% | |
| GTCGTGTTAGAGGCGGAATC+AGG | - | chr7.4:18414099-18414118 | MS.gene39124:intron | 55.0% | |
| TATCCCACTCTAGGTGGCGT+CGG | + | chr7.4:18415314-18415333 | None:intergenic | 55.0% | |
| ! | AGAGACGGCGATACCGATTG+CGG | + | chr7.4:18413186-18413205 | None:intergenic | 55.0% |
| ! | GGCGATACCGATTGCGGAAA+AGG | + | chr7.4:18413180-18413199 | None:intergenic | 55.0% |
| ! | GTGCTGCTATCAAGGCTCCA+AGG | - | chr7.4:18413354-18413373 | MS.gene39124:intron | 55.0% |
| ! | TTACCAAGCAGCGCCGAGAA+CGG | + | chr7.4:18413219-18413238 | None:intergenic | 55.0% |
| CCGCCTCTAACACGACACAG+TGG | + | chr7.4:18414095-18414114 | None:intergenic | 60.0% | |
| TAGCCGACGCCACCTAGAGT+GGG | - | chr7.4:18415308-18415327 | MS.gene39124:intron | 60.0% | |
| CTTGGGCTGCAGCACTCGTC+AGG | - | chr7.4:18413141-18413160 | MS.gene39124:CDS | 65.0% | |
| GTAGCCGACGCCACCTAGAG+TGG | - | chr7.4:18415307-18415326 | MS.gene39124:intron | 65.0% | |
| TCTCCGTTCTCGGCGCTGCT+TGG | - | chr7.4:18413213-18413232 | MS.gene39124:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 18413104 | 18416660 | 18413104 | ID=MS.gene39124 |
| chr7.4 | mRNA | 18413104 | 18416660 | 18413104 | ID=MS.gene39124.t1;Parent=MS.gene39124 |
| chr7.4 | exon | 18416530 | 18416660 | 18416530 | ID=MS.gene39124.t1.exon1;Parent=MS.gene39124.t1 |
| chr7.4 | CDS | 18416530 | 18416660 | 18416530 | ID=cds.MS.gene39124.t1;Parent=MS.gene39124.t1 |
| chr7.4 | exon | 18416365 | 18416442 | 18416365 | ID=MS.gene39124.t1.exon2;Parent=MS.gene39124.t1 |
| chr7.4 | CDS | 18416365 | 18416442 | 18416365 | ID=cds.MS.gene39124.t1;Parent=MS.gene39124.t1 |
| chr7.4 | exon | 18413385 | 18413555 | 18413385 | ID=MS.gene39124.t1.exon3;Parent=MS.gene39124.t1 |
| chr7.4 | CDS | 18413385 | 18413555 | 18413385 | ID=cds.MS.gene39124.t1;Parent=MS.gene39124.t1 |
| chr7.4 | exon | 18413104 | 18413272 | 18413104 | ID=MS.gene39124.t1.exon4;Parent=MS.gene39124.t1 |
| chr7.4 | CDS | 18413104 | 18413272 | 18413104 | ID=cds.MS.gene39124.t1;Parent=MS.gene39124.t1 |
| Gene Sequence |
| Protein sequence |
