Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38805.t1 | RHN47771.1 | 100 | 182 | 0 | 0 | 1 | 182 | 90 | 271 | 2.60E-72 | 281.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38805.t1 | Q9SLA2 | 90.3 | 175 | 17 | 0 | 7 | 181 | 4 | 178 | 1.0e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38805.t1 | G7KRP2 | 100.0 | 182 | 0 | 0 | 1 | 182 | 1 | 182 | 1.9e-72 | 281.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017789 | MS.gene38805 | PPI |
| MS.gene014034 | MS.gene38805 | PPI |
| MS.gene39124 | MS.gene38805 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38805.t1 | MTR_7g090330 | 100.000 | 182 | 0 | 0 | 1 | 182 | 1 | 182 | 6.65e-123 | 344 |
| MS.gene38805.t1 | MTR_4g072050 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.38e-23 | 90.1 |
| MS.gene38805.t1 | MTR_8g076150 | 36.424 | 151 | 91 | 2 | 26 | 176 | 13 | 158 | 7.66e-23 | 89.7 |
| MS.gene38805.t1 | MTR_5g021690 | 35.032 | 157 | 96 | 3 | 20 | 176 | 8 | 158 | 1.84e-22 | 89.0 |
| MS.gene38805.t1 | MTR_4g010220 | 71.930 | 57 | 11 | 1 | 1 | 57 | 1 | 52 | 1.08e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38805.t1 | AT2G25610 | 92.000 | 175 | 14 | 0 | 7 | 181 | 4 | 178 | 4.61e-111 | 314 |
| MS.gene38805.t1 | AT2G25610 | 92.000 | 175 | 14 | 0 | 7 | 181 | 53 | 227 | 7.24e-111 | 315 |
| MS.gene38805.t1 | AT4G32530 | 93.023 | 172 | 12 | 0 | 10 | 181 | 9 | 180 | 1.27e-110 | 313 |
| MS.gene38805.t1 | AT4G32530 | 79.208 | 202 | 12 | 1 | 10 | 181 | 9 | 210 | 2.18e-103 | 296 |
| MS.gene38805.t1 | AT1G19910 | 35.669 | 157 | 95 | 3 | 20 | 176 | 9 | 159 | 6.16e-23 | 90.1 |
| MS.gene38805.t1 | AT1G75630 | 35.669 | 157 | 95 | 3 | 20 | 176 | 10 | 160 | 6.45e-23 | 90.1 |
| MS.gene38805.t1 | AT4G38920 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene38805.t1 | AT4G34720 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene38805.t1 | AT2G16510 | 35.669 | 157 | 95 | 3 | 20 | 176 | 8 | 158 | 6.69e-23 | 90.1 |
| MS.gene38805.t1 | AT4G38920 | 37.226 | 137 | 81 | 2 | 40 | 176 | 1 | 132 | 5.86e-22 | 86.7 |
| MS.gene38805.t1 | AT4G34720 | 37.226 | 137 | 81 | 2 | 40 | 176 | 5 | 136 | 8.13e-22 | 86.7 |
| MS.gene38805.t1 | AT1G75630 | 29.843 | 191 | 94 | 5 | 20 | 176 | 10 | 194 | 5.39e-16 | 72.8 |
| MS.gene38805.t1 | AT1G19910 | 31.624 | 117 | 74 | 3 | 20 | 136 | 9 | 119 | 8.25e-11 | 57.4 |
Find 33 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATAGATACTTGATTT+TGG | 0.177979 | 7.1:+16887386 | None:intergenic |
| GGTAGTGCGCTTGGCCTATT+TGG | 0.238231 | 7.1:-16887088 | MS.gene38805:CDS |
| TATCCAGCTCTAAGAGATTC+TGG | 0.324274 | 7.1:+16887365 | None:intergenic |
| GGATATGCAATCTTTGCTTC+TGG | 0.326193 | 7.1:-16887347 | MS.gene38805:CDS |
| ATTCTTGTGATTGAGATCTT+TGG | 0.353130 | 7.1:-16887109 | MS.gene38805:CDS |
| GGCCTATTTGGAGTTATTGT+TGG | 0.370654 | 7.1:-16887076 | MS.gene38805:CDS |
| TTGCAGCGCATTCAAGCTCT+TGG | 0.376310 | 7.1:-16890457 | MS.gene38805:CDS |
| TTTGCTTCTGGACTTATTGT+GGG | 0.379757 | 7.1:-16887335 | MS.gene38805:CDS |
| AGGTTGTGTGTAGGCATAAT+TGG | 0.380831 | 7.1:-16887181 | MS.gene38805:CDS |
| TTCCAACAATAACTCCAAAT+AGG | 0.387180 | 7.1:+16887074 | None:intergenic |
| CTTTGCTTCTGGACTTATTG+TGG | 0.393040 | 7.1:-16887336 | MS.gene38805:CDS |
| TGTGAAGCTGTCGCTATATA+TGG | 0.402926 | 7.1:-16887452 | MS.gene38805:CDS |
| GGCGATACCGATTGCGGAAA+AGG | 0.405375 | 7.1:+16890403 | None:intergenic |
| CTTGGGCTGCAGCACTCGTC+AGG | 0.412435 | 7.1:-16890439 | MS.gene38805:CDS |
| TCTCCGTTCTCGGCGCTGCT+TGG | 0.425603 | 7.1:-16890367 | MS.gene38805:intron |
| GCTTCGCAAATCTTGTTTGT+GGG | 0.438334 | 7.1:-16887313 | MS.gene38805:intron |
| TGCAGCGCATTCAAGCTCTT+GGG | 0.466822 | 7.1:-16890456 | MS.gene38805:CDS |
| TCTATCGGTGTCTCCGTTCT+CGG | 0.467994 | 7.1:-16890377 | MS.gene38805:CDS |
| GAGATCTTTGGTAGTGCGCT+TGG | 0.473123 | 7.1:-16887097 | MS.gene38805:CDS |
| TTTGATCGGTGCTGCTATCA+AGG | 0.480937 | 7.1:-16890233 | MS.gene38805:CDS |
| ATCGGTATCGCCGTCTCTAT+CGG | 0.483284 | 7.1:-16890392 | MS.gene38805:CDS |
| CCGATTGCGGAAAAGGTGTA+TGG | 0.489744 | 7.1:+16890410 | None:intergenic |
| GGCTTCGCAAATCTTGTTTG+TGG | 0.492697 | 7.1:-16887314 | MS.gene38805:CDS |
| GAACCAGAATCTCTTAGAGC+TGG | 0.512261 | 7.1:-16887368 | MS.gene38805:CDS |
| TGTTGTTGCAGGTTGTGTGT+AGG | 0.535435 | 7.1:-16887190 | MS.gene38805:intron |
| TGAAGGGGAATTTACATCAC+CGG | 0.569427 | 7.1:-16890262 | MS.gene38805:intron |
| ATCACCGGTAGTAGTTTGAT+CGG | 0.575017 | 7.1:-16890247 | MS.gene38805:CDS |
| TTACCAAGCAGCGCCGAGAA+CGG | 0.602925 | 7.1:+16890364 | None:intergenic |
| AGCACCGATCAAACTACTAC+CGG | 0.613839 | 7.1:+16890243 | None:intergenic |
| AACGGAGACACCGATAGAGA+CGG | 0.614106 | 7.1:+16890382 | None:intergenic |
| GTGCTGCTATCAAGGCTCCA+AGG | 0.615656 | 7.1:-16890225 | MS.gene38805:CDS |
| AGAGACGGCGATACCGATTG+CGG | 0.644220 | 7.1:+16890397 | None:intergenic |
| TTATGTCAGCTCAAGCAACA+TGG | 0.667422 | 7.1:-16887048 | MS.gene38805:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATTCTTTCTTTTTT+TGG | + | chr7.1:16889532-16889551 | None:intergenic | 10.0% |
| !!! | ATGTAAATATTTTACTTTTT+TGG | - | chr7.1:16887650-16887669 | MS.gene38805:intron | 10.0% |
| !! | AATCAGAAAAAAATTATTGA+GGG | - | chr7.1:16888045-16888064 | MS.gene38805:intron | 15.0% |
| !! | ACTAAAAAACACAAATTTAA+AGG | + | chr7.1:16887353-16887372 | None:intergenic | 15.0% |
| !! | ATGAAAATGATAAAGAAAAA+AGG | - | chr7.1:16887878-16887897 | MS.gene38805:intron | 15.0% |
| !! | TAAATATCACATAAAATACA+GGG | + | chr7.1:16889836-16889855 | None:intergenic | 15.0% |
| !! | TACAATACATTTCTTAAAAA+AGG | + | chr7.1:16888321-16888340 | None:intergenic | 15.0% |
| !!! | TGTAAAAAATTACCTAATTT+TGG | + | chr7.1:16889082-16889101 | None:intergenic | 15.0% |
| !!! | TTTTTAAGAAATGTATTGTA+GGG | - | chr7.1:16888321-16888340 | MS.gene38805:intron | 15.0% |
| !!! | TTTTTTAAGAAATGTATTGT+AGG | - | chr7.1:16888320-16888339 | MS.gene38805:intron | 15.0% |
| !! | AAATAATGAGACATCAAAAT+AGG | - | chr7.1:16888078-16888097 | MS.gene38805:intron | 20.0% |
| !! | AATACAAACTTAAACGTAAA+AGG | + | chr7.1:16889922-16889941 | None:intergenic | 20.0% |
| !! | ATCAGAAAAAAATTATTGAG+GGG | - | chr7.1:16888046-16888065 | MS.gene38805:intron | 20.0% |
| !! | ATGTTTAATGCTTAATATCA+TGG | - | chr7.1:16887544-16887563 | MS.gene38805:intron | 20.0% |
| !! | CTAAATATCACATAAAATAC+AGG | + | chr7.1:16889837-16889856 | None:intergenic | 20.0% |
| !! | GAATCAGAAAAAAATTATTG+AGG | - | chr7.1:16888044-16888063 | MS.gene38805:intron | 20.0% |
| !! | TAAACAACAGATTCAAATAA+CGG | + | chr7.1:16887218-16887237 | None:intergenic | 20.0% |
| !!! | AAAATGTTTACTTTTGGATT+TGG | - | chr7.1:16888502-16888521 | MS.gene38805:intron | 20.0% |
| !!! | AAGAGATAATTTGATTTGAA+AGG | + | chr7.1:16887194-16887213 | None:intergenic | 20.0% |
| !!! | AAGTAGAAAATGTTTACTTT+TGG | - | chr7.1:16888496-16888515 | MS.gene38805:intron | 20.0% |
| !!! | AGAGATAATTTGATTTGAAA+GGG | + | chr7.1:16887193-16887212 | None:intergenic | 20.0% |
| ! | AAAACATGGTAAAATGATTG+TGG | - | chr7.1:16889586-16889605 | MS.gene38805:intron | 25.0% |
| ! | AAACAAGTGAAATAATTTCG+TGG | - | chr7.1:16889278-16889297 | MS.gene38805:intron | 25.0% |
| ! | AAATGAGGAAGTTAATTACT+AGG | - | chr7.1:16887591-16887610 | MS.gene38805:intron | 25.0% |
| ! | AATAATTGAGTATGTAGAAC+AGG | + | chr7.1:16890297-16890316 | None:intergenic | 25.0% |
| ! | ATTGCTTCAGAAAAATGTTT+AGG | - | chr7.1:16888794-16888813 | MS.gene38805:intron | 25.0% |
| ! | CAAAGTGATACTCTAATTAT+TGG | - | chr7.1:16889470-16889489 | MS.gene38805:intron | 25.0% |
| ! | GAATATTTCCGTAAATTCAT+GGG | - | chr7.1:16889430-16889449 | MS.gene38805:intron | 25.0% |
| ! | GATTAATAACTAATACTACC+AGG | + | chr7.1:16888956-16888975 | None:intergenic | 25.0% |
| ! | GCATAATTTAATGAAGTATG+TGG | + | chr7.1:16888571-16888590 | None:intergenic | 25.0% |
| ! | GCTAAACAAATGGTTAATTA+AGG | - | chr7.1:16889803-16889822 | MS.gene38805:intron | 25.0% |
| ! | GCTCATAATAAATGATCATT+TGG | - | chr7.1:16887809-16887828 | MS.gene38805:intron | 25.0% |
| ! | GGGAAAATTGAAAAAAATAG+GGG | + | chr7.1:16887171-16887190 | None:intergenic | 25.0% |
| ! | GGGGAAAATTGAAAAAAATA+GGG | + | chr7.1:16887172-16887191 | None:intergenic | 25.0% |
| ! | GTAACATGATATATAACAAG+TGG | - | chr7.1:16889319-16889338 | MS.gene38805:intron | 25.0% |
| ! | GTTACTTGTAGTAATTAAGT+CGG | - | chr7.1:16889031-16889050 | MS.gene38805:intron | 25.0% |
| ! | TCAGAAAAAAATTATTGAGG+GGG | - | chr7.1:16888047-16888066 | MS.gene38805:intron | 25.0% |
| ! | TGAATATTTCCGTAAATTCA+TGG | - | chr7.1:16889429-16889448 | MS.gene38805:intron | 25.0% |
| ! | TTCCAGAAACAAATTCTATT+TGG | + | chr7.1:16889106-16889125 | None:intergenic | 25.0% |
| ! | TTGTTTATGTAATGGTTGAA+GGG | - | chr7.1:16887231-16887250 | MS.gene38805:intron | 25.0% |
| !! | AACCAAATAGAATTTGTTTC+TGG | - | chr7.1:16889101-16889120 | MS.gene38805:intron | 25.0% |
| !! | AGTAAACATTTTCTACTTAG+CGG | + | chr7.1:16888494-16888513 | None:intergenic | 25.0% |
| !! | TACATACCTAATGAGATTTT+TGG | + | chr7.1:16887317-16887336 | None:intergenic | 25.0% |
| !! | TCACAATACTGTTTTATAGA+AGG | - | chr7.1:16888721-16888740 | MS.gene38805:intron | 25.0% |
| !! | TGAATCTGTTGTTTATGTAA+TGG | - | chr7.1:16887223-16887242 | MS.gene38805:intron | 25.0% |
| !! | TTATTTTCCTACAGAACAAT+TGG | + | chr7.1:16887977-16887996 | None:intergenic | 25.0% |
| !!! | AGATAATTTGATTTGAAAGG+GGG | + | chr7.1:16887191-16887210 | None:intergenic | 25.0% |
| !!! | ATTCTTTCTTTTTTTGGTCA+AGG | + | chr7.1:16889526-16889545 | None:intergenic | 25.0% |
| !!! | CTAGTTTCTTTTTAGTTGAA+AGG | - | chr7.1:16887568-16887587 | MS.gene38805:intron | 25.0% |
| !!! | GAGATAATTTGATTTGAAAG+GGG | + | chr7.1:16887192-16887211 | None:intergenic | 25.0% |
| !!! | GGATAATATTCACTTTTGAT+TGG | - | chr7.1:16889052-16889071 | MS.gene38805:intron | 25.0% |
| !!! | TCAATTATTTTTGTTGTTGC+AGG | - | chr7.1:16890308-16890327 | MS.gene38805:intron | 25.0% |
| !!! | TTTTTAGTTGAAAGGAAATG+AGG | - | chr7.1:16887576-16887595 | MS.gene38805:intron | 25.0% |
| AAAGGAATTGTTATAGAGCT+TGG | - | chr7.1:16887497-16887516 | MS.gene38805:intron | 30.0% | |
| AACTATCAAAAAAGACCCAA+AGG | - | chr7.1:16889152-16889171 | MS.gene38805:intron | 30.0% | |
| AAGCGATATTACTATGTATC+TGG | - | chr7.1:16887751-16887770 | MS.gene38805:intron | 30.0% | |
| AATCACGCAGAACAAAAATT+TGG | + | chr7.1:16888880-16888899 | None:intergenic | 30.0% | |
| AATGTGAGATTCTTACATGA+TGG | + | chr7.1:16889767-16889786 | None:intergenic | 30.0% | |
| ACAGTTCATAGAGAAAATCT+TGG | + | chr7.1:16889704-16889723 | None:intergenic | 30.0% | |
| ATCATTTGGTCTGATATGAA+GGG | - | chr7.1:16887823-16887842 | MS.gene38805:intron | 30.0% | |
| ATTCTTGTGATTGAGATCTT+TGG | - | chr7.1:16890400-16890419 | MS.gene38805:CDS | 30.0% | |
| ATTTAATGAAGTATGTGGCT+TGG | + | chr7.1:16888566-16888585 | None:intergenic | 30.0% | |
| CAGAAAAAAATTATTGAGGG+GGG | - | chr7.1:16888048-16888067 | MS.gene38805:intron | 30.0% | |
| GATAAATGAGAAAGACTTGT+TGG | + | chr7.1:16888600-16888619 | None:intergenic | 30.0% | |
| GGGGGAAAATTGAAAAAAAT+AGG | + | chr7.1:16887173-16887192 | None:intergenic | 30.0% | |
| GTTGTTTATGTAATGGTTGA+AGG | - | chr7.1:16887230-16887249 | MS.gene38805:intron | 30.0% | |
| TCACTGTGTAATCATACAAT+TGG | - | chr7.1:16887931-16887950 | MS.gene38805:intron | 30.0% | |
| TCACTTCCAAAAATCTCATT+AGG | - | chr7.1:16887308-16887327 | MS.gene38805:intron | 30.0% | |
| TGTTTATGTAATGGTTGAAG+GGG | - | chr7.1:16887232-16887251 | MS.gene38805:intron | 30.0% | |
| TTATATAAACGACACAGAGA+CGG | + | chr7.1:16888169-16888188 | None:intergenic | 30.0% | |
| TTCCAACAATAACTCCAAAT+AGG | + | chr7.1:16890438-16890457 | None:intergenic | 30.0% | |
| TTTGATGCAAGGAAAATCAA+AGG | + | chr7.1:16889569-16889588 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTGCATCAAAACA+TGG | - | chr7.1:16889572-16889591 | MS.gene38805:intron | 30.0% |
| ! | CACATTTTCTCAAACCTTTA+AGG | - | chr7.1:16889781-16889800 | MS.gene38805:intron | 30.0% |
| ! | CTCGATGATAAGTTTTACAA+TGG | - | chr7.1:16887391-16887410 | MS.gene38805:CDS | 30.0% |
| ! | CTGTTGATTGAACTTAGATA+GGG | - | chr7.1:16887431-16887450 | MS.gene38805:CDS | 30.0% |
| ! | GGTTCATAGATACTTGATTT+TGG | + | chr7.1:16890126-16890145 | None:intergenic | 30.0% |
| ! | TCTGTTGATTGAACTTAGAT+AGG | - | chr7.1:16887430-16887449 | MS.gene38805:CDS | 30.0% |
| !! | AACCATTTGTTTAGCCTTAA+AGG | + | chr7.1:16889798-16889817 | None:intergenic | 30.0% |
| !! | AACCTTTAAGGCTAAACAAA+TGG | - | chr7.1:16889793-16889812 | MS.gene38805:intron | 30.0% |
| !! | ATGTTTACTTTTGGATTTGG+CGG | - | chr7.1:16888505-16888524 | MS.gene38805:intron | 30.0% |
| !! | TTGAGTTTGACTTGACAATA+TGG | - | chr7.1:16890000-16890019 | MS.gene38805:intron | 30.0% |
| !!! | ATCTGTCATTTTTAGTGTTG+AGG | - | chr7.1:16887722-16887741 | MS.gene38805:intron | 30.0% |
| !!! | GGTCTTTTTTGATAGTTTTC+TGG | + | chr7.1:16889149-16889168 | None:intergenic | 30.0% |
| !!! | GTTACTTTTGTTGCTTTGTT+TGG | - | chr7.1:16889001-16889020 | MS.gene38805:intron | 30.0% |
| !!! | GTTTTGGTTATGTTTTACAG+AGG | - | chr7.1:16889650-16889669 | MS.gene38805:intron | 30.0% |
| !!! | TACTTTTTTGGCGACTTAAT+GGG | - | chr7.1:16887662-16887681 | MS.gene38805:intron | 30.0% |
| !!! | TTACTTTTTTGGCGACTTAA+TGG | - | chr7.1:16887661-16887680 | MS.gene38805:intron | 30.0% |
| !!! | TTTTACCATGTTTTGATGCA+AGG | + | chr7.1:16889580-16889599 | None:intergenic | 30.0% |
| !!! | TTTTCTGAAGCAATTGTTGA+GGG | + | chr7.1:16888788-16888807 | None:intergenic | 30.0% |
| !!! | TTTTTCTGAAGCAATTGTTG+AGG | + | chr7.1:16888789-16888808 | None:intergenic | 30.0% |
| AAAAAAATTATTGAGGGGGG+TGG | - | chr7.1:16888051-16888070 | MS.gene38805:intron | 35.0% | |
| AAAAAAGACCCAAAGGTCAA+TGG | - | chr7.1:16889159-16889178 | MS.gene38805:intron | 35.0% | |
| AAAAAATTATTGAGGGGGGT+GGG | - | chr7.1:16888052-16888071 | MS.gene38805:intron | 35.0% | |
| AGAATTCTCATGGAGAATGT+AGG | - | chr7.1:16890257-16890276 | MS.gene38805:CDS | 35.0% | |
| AGAGCTCAACACATAATCTT+TGG | - | chr7.1:16889610-16889629 | MS.gene38805:intron | 35.0% | |
| ATTGAGTATGTAGAACAGGA+TGG | + | chr7.1:16890293-16890312 | None:intergenic | 35.0% | |
| ATTGTTGATCGAGCTCAAAA+TGG | - | chr7.1:16888379-16888398 | MS.gene38805:intron | 35.0% | |
| ATTTCCGTAAATTCATGGGT+CGG | - | chr7.1:16889434-16889453 | MS.gene38805:intron | 35.0% | |
| CAAGTGAAATAATTTCGTGG+AGG | - | chr7.1:16889281-16889300 | MS.gene38805:intron | 35.0% | |
| CATCTTCACAAGAATTCTCA+TGG | - | chr7.1:16890247-16890266 | MS.gene38805:CDS | 35.0% | |
| CTACATCAATTAAACGACAC+TGG | + | chr7.1:16888924-16888943 | None:intergenic | 35.0% | |
| GAATTCTCATGGAGAATGTA+GGG | - | chr7.1:16890258-16890277 | MS.gene38805:CDS | 35.0% | |
| GATCATTTGGTCTGATATGA+AGG | - | chr7.1:16887822-16887841 | MS.gene38805:intron | 35.0% | |
| TATGTAGAACAGGATGGATA+AGG | + | chr7.1:16890287-16890306 | None:intergenic | 35.0% | |
| TGATTACACAGTGAGTTTAG+TGG | + | chr7.1:16887925-16887944 | None:intergenic | 35.0% | |
| TTAGCGGTTCTCATGATAAA+AGG | + | chr7.1:16888478-16888497 | None:intergenic | 35.0% | |
| TTGATTGGCACACCAAAATT+AGG | - | chr7.1:16889067-16889086 | MS.gene38805:intron | 35.0% | |
| TTGTGAAGATGTGAATATGC+AGG | + | chr7.1:16890238-16890257 | None:intergenic | 35.0% | |
| TTTGCTTCTGGACTTATTGT+GGG | - | chr7.1:16890174-16890193 | MS.gene38805:intron | 35.0% | |
| ! | AACACATAATCTTTGGCTTC+TGG | - | chr7.1:16889617-16889636 | MS.gene38805:intron | 35.0% |
| ! | AAGAATTTTCACGAAGAGAG+AGG | + | chr7.1:16890386-16890405 | None:intergenic | 35.0% |
| ! | GTTTTGCTTCGATTGATGTT+TGG | - | chr7.1:16887469-16887488 | MS.gene38805:intron | 35.0% |
| ! | TTACATTTGAGTGTTGTGAG+TGG | - | chr7.1:16889889-16889908 | MS.gene38805:intron | 35.0% |
| !! | AGATTTTTGGAAGTGATCCT+TGG | + | chr7.1:16887304-16887323 | None:intergenic | 35.0% |
| !! | GTTCTGCGTGATTTGTTTAA+AGG | - | chr7.1:16888887-16888906 | MS.gene38805:intron | 35.0% |
| !! | TGTTTACTTTTGGATTTGGC+GGG | - | chr7.1:16888506-16888525 | MS.gene38805:intron | 35.0% |
| !! | TTTCTGAAGCAATTGTTGAG+GGG | + | chr7.1:16888787-16888806 | None:intergenic | 35.0% |
| !! | TTTGATAGTTTTCTGGTGTC+TGG | + | chr7.1:16889142-16889161 | None:intergenic | 35.0% |
| !!! | TGTCATTTTTAGTGTTGAGG+AGG | - | chr7.1:16887725-16887744 | MS.gene38805:intron | 35.0% |
| AGGTTGTGTGTAGGCATAAT+TGG | - | chr7.1:16890328-16890347 | MS.gene38805:intron | 40.0% | |
| ATCACCGGTAGTAGTTTGAT+CGG | - | chr7.1:16887262-16887281 | MS.gene38805:intron | 40.0% | |
| CTATGCATGTAACAGTGAGT+GGG | - | chr7.1:16888270-16888289 | MS.gene38805:intron | 40.0% | |
| CTTTGCTTCTGGACTTATTG+TGG | - | chr7.1:16890173-16890192 | MS.gene38805:intron | 40.0% | |
| CTTTGGTCCAATTGTTCTGT+AGG | - | chr7.1:16887967-16887986 | MS.gene38805:intron | 40.0% | |
| GATTGATGTTTGGAGGAGAA+AGG | - | chr7.1:16887479-16887498 | MS.gene38805:intron | 40.0% | |
| GGATATGCAATCTTTGCTTC+TGG | - | chr7.1:16890162-16890181 | MS.gene38805:intron | 40.0% | |
| GTTCCAAATACAACCGTTTG+TGG | - | chr7.1:16889974-16889993 | MS.gene38805:intron | 40.0% | |
| TAAGCCAACCATTGACCTTT+GGG | + | chr7.1:16889170-16889189 | None:intergenic | 40.0% | |
| TATCCCGACCCATGAATTTA+CGG | + | chr7.1:16889441-16889460 | None:intergenic | 40.0% | |
| TCAAACTCAAGTGCCACAAA+CGG | + | chr7.1:16889990-16890009 | None:intergenic | 40.0% | |
| TGAAGGGGAATTTACATCAC+CGG | - | chr7.1:16887247-16887266 | MS.gene38805:intron | 40.0% | |
| TGTGAAGCTGTCGCTATATA+TGG | - | chr7.1:16890057-16890076 | MS.gene38805:intron | 40.0% | |
| TTAAGCCAACCATTGACCTT+TGG | + | chr7.1:16889171-16889190 | None:intergenic | 40.0% | |
| TTACACAGTGAGTTTAGTGG+AGG | + | chr7.1:16887922-16887941 | None:intergenic | 40.0% | |
| TTATGTCAGCTCAAGCAACA+TGG | - | chr7.1:16890461-16890480 | MS.gene38805:CDS | 40.0% | |
| TTGATGTAGCTAACTTCACC+TGG | - | chr7.1:16888935-16888954 | MS.gene38805:intron | 40.0% | |
| TTGCTTCGATTGATGTTTGG+AGG | - | chr7.1:16887472-16887491 | MS.gene38805:intron | 40.0% | |
| TTTCCGTAAATTCATGGGTC+GGG | - | chr7.1:16889435-16889454 | MS.gene38805:intron | 40.0% | |
| ! | CCAACTACAATGCTACTTAG+CGG | + | chr7.1:16888416-16888435 | None:intergenic | 40.0% |
| ! | CGCTTTCTAATTTTGTCTGC+AGG | + | chr7.1:16890101-16890120 | None:intergenic | 40.0% |
| ! | CTAGCTCATTTGGTTTAGTG+TGG | - | chr7.1:16888643-16888662 | MS.gene38805:intron | 40.0% |
| ! | GCTTCGCAAATCTTGTTTGT+GGG | - | chr7.1:16890196-16890215 | MS.gene38805:intron | 40.0% |
| ! | GGCCTATTTGGAGTTATTGT+TGG | - | chr7.1:16890433-16890452 | MS.gene38805:CDS | 40.0% |
| !! | TATCCAGCTCTAAGAGATTC+TGG | + | chr7.1:16890147-16890166 | None:intergenic | 40.0% |
| !! | TTCTGGTGTGTGTTTGGTTT+TGG | - | chr7.1:16889634-16889653 | MS.gene38805:intron | 40.0% |
| !! | TTTTTGGCGACTTAATGGGT+GGG | - | chr7.1:16887666-16887685 | MS.gene38805:intron | 40.0% |
| !!! | TTTTTTGGCGACTTAATGGG+TGG | - | chr7.1:16887665-16887684 | MS.gene38805:intron | 40.0% |
| AACCAAATGAGCTAGTGCAG+AGG | + | chr7.1:16888638-16888657 | None:intergenic | 45.0% | |
| AAGACCCAAAGGTCAATGGT+TGG | - | chr7.1:16889163-16889182 | MS.gene38805:intron | 45.0% | |
| ACCAAATGAGCTAGTGCAGA+GGG | + | chr7.1:16888637-16888656 | None:intergenic | 45.0% | |
| ATGTCACTGGTACACCCAAA+TGG | + | chr7.1:16888677-16888696 | None:intergenic | 45.0% | |
| CCACTCACTGTTACATGCAT+AGG | + | chr7.1:16888272-16888291 | None:intergenic | 45.0% | |
| CCGCTAAGTAGCATTGTAGT+TGG | - | chr7.1:16888413-16888432 | MS.gene38805:intron | 45.0% | |
| CCTATGCATGTAACAGTGAG+TGG | - | chr7.1:16888269-16888288 | MS.gene38805:intron | 45.0% | |
| GAACCAGAATCTCTTAGAGC+TGG | - | chr7.1:16890141-16890160 | MS.gene38805:intron | 45.0% | |
| GGTGTACCAGTGACATCAAT+CGG | - | chr7.1:16888681-16888700 | MS.gene38805:intron | 45.0% | |
| GTGCCACAAACGGTTGTATT+TGG | + | chr7.1:16889980-16889999 | None:intergenic | 45.0% | |
| TCACCACTGTGTTGTGTTAG+AGG | - | chr7.1:16888019-16888038 | MS.gene38805:intron | 45.0% | |
| TCTAACACAACACAGTGGTG+AGG | + | chr7.1:16888020-16888039 | None:intergenic | 45.0% | |
| TGTTGTTGCAGGTTGTGTGT+AGG | - | chr7.1:16890319-16890338 | MS.gene38805:intron | 45.0% | |
| ! | AGTGTGGTTTGTCCTCCATT+TGG | - | chr7.1:16888659-16888678 | MS.gene38805:intron | 45.0% |
| ! | CAATGCTACTTAGCGGTAAC+TGG | + | chr7.1:16888409-16888428 | None:intergenic | 45.0% |
| ! | CCATACACCTTTTCCGCAAT+CGG | - | chr7.1:16887099-16887118 | MS.gene38805:CDS | 45.0% |
| ! | GGCTTCGCAAATCTTGTTTG+TGG | - | chr7.1:16890195-16890214 | MS.gene38805:intron | 45.0% |
| ! | GTGTGGTTTGTCCTCCATTT+GGG | - | chr7.1:16888660-16888679 | MS.gene38805:intron | 45.0% |
| ! | TGGACCAAAGTGCTTTGTTG+TGG | + | chr7.1:16887957-16887976 | None:intergenic | 45.0% |
| ! | TTGGCCACAACAAAGCACTT+TGG | - | chr7.1:16887950-16887969 | MS.gene38805:intron | 45.0% |
| ! | TTTGGCTTCTGGTGTGTGTT+TGG | - | chr7.1:16889628-16889647 | MS.gene38805:intron | 45.0% |
| !! | AGCACCGATCAAACTACTAC+CGG | + | chr7.1:16887269-16887288 | None:intergenic | 45.0% |
| !! | TTACTTTTGGATTTGGCGGG+TGG | - | chr7.1:16888509-16888528 | MS.gene38805:intron | 45.0% |
| !! | TTTGATCGGTGCTGCTATCA+AGG | - | chr7.1:16887276-16887295 | MS.gene38805:intron | 45.0% |
| AAATTATTGAGGGGGGTGGG+AGG | - | chr7.1:16888055-16888074 | MS.gene38805:intron | 50.0% | |
| AACGACACAGAGACGGAACT+AGG | + | chr7.1:16888162-16888181 | None:intergenic | 50.0% | |
| AACGGAGACACCGATAGAGA+CGG | + | chr7.1:16887130-16887149 | None:intergenic | 50.0% | |
| AGACAGCCGATTGATGTCAC+TGG | + | chr7.1:16888690-16888709 | None:intergenic | 50.0% | |
| AGTGCAGAGGGAAGTTGACA+TGG | + | chr7.1:16888625-16888644 | None:intergenic | 50.0% | |
| ATCGGTATCGCCGTCTCTAT+CGG | - | chr7.1:16887117-16887136 | MS.gene38805:CDS | 50.0% | |
| CCACTGTGTTGTGTTAGAGG+CGG | - | chr7.1:16888022-16888041 | MS.gene38805:intron | 50.0% | |
| TCACTGGTACACCCAAATGG+AGG | + | chr7.1:16888674-16888693 | None:intergenic | 50.0% | |
| TCCCTCTGCACTAGCTCATT+TGG | - | chr7.1:16888633-16888652 | MS.gene38805:intron | 50.0% | |
| TGCAGCGCATTCAAGCTCTT+GGG | - | chr7.1:16887053-16887072 | MS.gene38805:CDS | 50.0% | |
| TGCATGTAACAGTGAGTGGG+TGG | - | chr7.1:16888273-16888292 | MS.gene38805:intron | 50.0% | |
| TGGAACTATTGCTGCTGTGC+AGG | + | chr7.1:16889960-16889979 | None:intergenic | 50.0% | |
| TTGCAGCGCATTCAAGCTCT+TGG | - | chr7.1:16887052-16887071 | MS.gene38805:CDS | 50.0% | |
| ! | AAGCCTTATCCCACTCTAGG+TGG | + | chr7.1:16889226-16889245 | None:intergenic | 50.0% |
| ! | CCGATTGCGGAAAAGGTGTA+TGG | + | chr7.1:16887102-16887121 | None:intergenic | 50.0% |
| ! | GCTAAGCCTTATCCCACTCT+AGG | + | chr7.1:16889229-16889248 | None:intergenic | 50.0% |
| ! | TCTATCGGTGTCTCCGTTCT+CGG | - | chr7.1:16887132-16887151 | MS.gene38805:CDS | 50.0% |
| !! | GAGATCTTTGGTAGTGCGCT+TGG | - | chr7.1:16890412-16890431 | MS.gene38805:CDS | 50.0% |
| ACAGTGAGTGGGTGGTTGTC+TGG | - | chr7.1:16888281-16888300 | MS.gene38805:intron | 55.0% | |
| ACGCCACCTAGAGTGGGATA+AGG | - | chr7.1:16889220-16889239 | MS.gene38805:intron | 55.0% | |
| CAGTGAGTGGGTGGTTGTCT+GGG | - | chr7.1:16888282-16888301 | MS.gene38805:intron | 55.0% | |
| CCGCCTCTAACACAACACAG+TGG | + | chr7.1:16888025-16888044 | None:intergenic | 55.0% | |
| GGTAGTGCGCTTGGCCTATT+TGG | - | chr7.1:16890421-16890440 | MS.gene38805:CDS | 55.0% | |
| TATCCCACTCTAGGTGGCGT+CGG | + | chr7.1:16889220-16889239 | None:intergenic | 55.0% | |
| ! | AGAGACGGCGATACCGATTG+CGG | + | chr7.1:16887115-16887134 | None:intergenic | 55.0% |
| ! | GGCGATACCGATTGCGGAAA+AGG | + | chr7.1:16887109-16887128 | None:intergenic | 55.0% |
| ! | GTGCTGCTATCAAGGCTCCA+AGG | - | chr7.1:16887284-16887303 | MS.gene38805:intron | 55.0% |
| ! | TTACCAAGCAGCGCCGAGAA+CGG | + | chr7.1:16887148-16887167 | None:intergenic | 55.0% |
| TAGCCGACGCCACCTAGAGT+GGG | - | chr7.1:16889214-16889233 | MS.gene38805:intron | 60.0% | |
| CTTGGGCTGCAGCACTCGTC+AGG | - | chr7.1:16887070-16887089 | MS.gene38805:CDS | 65.0% | |
| GTAGCCGACGCCACCTAGAG+TGG | - | chr7.1:16889213-16889232 | MS.gene38805:intron | 65.0% | |
| TCTCCGTTCTCGGCGCTGCT+TGG | - | chr7.1:16887142-16887161 | MS.gene38805:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 16887033 | 16890498 | 16887033 | ID=MS.gene38805 |
| chr7.1 | mRNA | 16887033 | 16890498 | 16887033 | ID=MS.gene38805.t1;Parent=MS.gene38805 |
| chr7.1 | exon | 16890368 | 16890498 | 16890368 | ID=MS.gene38805.t1.exon1;Parent=MS.gene38805.t1 |
| chr7.1 | CDS | 16890368 | 16890498 | 16890368 | ID=cds.MS.gene38805.t1;Parent=MS.gene38805.t1 |
| chr7.1 | exon | 16890202 | 16890279 | 16890202 | ID=MS.gene38805.t1.exon2;Parent=MS.gene38805.t1 |
| chr7.1 | CDS | 16890202 | 16890279 | 16890202 | ID=cds.MS.gene38805.t1;Parent=MS.gene38805.t1 |
| chr7.1 | exon | 16887314 | 16887484 | 16887314 | ID=MS.gene38805.t1.exon3;Parent=MS.gene38805.t1 |
| chr7.1 | CDS | 16887314 | 16887484 | 16887314 | ID=cds.MS.gene38805.t1;Parent=MS.gene38805.t1 |
| chr7.1 | exon | 16887033 | 16887201 | 16887033 | ID=MS.gene38805.t1.exon4;Parent=MS.gene38805.t1 |
| chr7.1 | CDS | 16887033 | 16887201 | 16887033 | ID=cds.MS.gene38805.t1;Parent=MS.gene38805.t1 |
| Gene Sequence |
| Protein sequence |
