Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018224.t1 | XP_024641605.1 | 78.1 | 758 | 104 | 5 | 1 | 701 | 1 | 753 | 0.00E+00 | 1146 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018224.t1 | Q9C7A2 | 33.3 | 108 | 70 | 2 | 539 | 646 | 412 | 517 | 3.8e-06 | 55.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018224.t1 | A0A396HG96 | 73.9 | 766 | 120 | 5 | 1 | 702 | 1 | 750 | 0.0e+00 | 1079.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene018224 | MS.gene85146 | PPI |
MS.gene85145 | MS.gene018224 | PPI |
MS.gene018224 | MS.gene36348 | PPI |
MS.gene36347 | MS.gene018224 | PPI |
MS.gene018224 | MS.gene76530 | PPI |
MS.gene018224 | MS.gene069865 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018224.t1 | MTR_5g028190 | 60.597 | 335 | 128 | 3 | 360 | 691 | 199 | 532 | 1.12e-132 | 402 |
MS.gene018224.t1 | MTR_5g028190 | 43.523 | 193 | 91 | 8 | 105 | 284 | 12 | 199 | 4.43e-32 | 131 |
MS.gene018224.t1 | MTR_5g028130 | 57.353 | 340 | 137 | 4 | 360 | 693 | 1 | 338 | 2.87e-125 | 376 |
MS.gene018224.t1 | MTR_5g028450 | 59.211 | 304 | 118 | 4 | 402 | 700 | 1 | 303 | 6.00e-105 | 322 |
MS.gene018224.t1 | MTR_6g017215 | 85.870 | 184 | 26 | 0 | 502 | 685 | 6 | 189 | 1.80e-101 | 311 |
MS.gene018224.t1 | MTR_5g028930 | 44.134 | 358 | 183 | 7 | 348 | 693 | 266 | 618 | 3.11e-83 | 276 |
MS.gene018224.t1 | MTR_5g028930 | 33.641 | 217 | 122 | 9 | 34 | 238 | 15 | 221 | 1.26e-17 | 87.4 |
MS.gene018224.t1 | MTR_5g091220 | 30.349 | 659 | 382 | 16 | 47 | 693 | 11 | 604 | 1.30e-65 | 228 |
MS.gene018224.t1 | MTR_2g438740 | 40.728 | 302 | 176 | 3 | 405 | 703 | 279 | 580 | 1.14e-63 | 222 |
MS.gene018224.t1 | MTR_3g055310 | 30.588 | 510 | 289 | 11 | 175 | 675 | 20 | 473 | 9.79e-61 | 212 |
MS.gene018224.t1 | MTR_3g055310 | 37.736 | 318 | 194 | 3 | 360 | 675 | 15 | 330 | 1.18e-60 | 207 |
MS.gene018224.t1 | MTR_3g055310 | 36.888 | 347 | 210 | 5 | 331 | 675 | 54 | 393 | 4.16e-60 | 208 |
MS.gene018224.t1 | MTR_3g055310 | 36.888 | 347 | 210 | 5 | 331 | 675 | 106 | 445 | 1.09e-59 | 208 |
MS.gene018224.t1 | MTR_3g055310 | 36.888 | 347 | 210 | 5 | 331 | 675 | 132 | 471 | 3.16e-59 | 208 |
MS.gene018224.t1 | MTR_3g055310 | 36.888 | 347 | 210 | 5 | 331 | 675 | 159 | 498 | 7.33e-59 | 207 |
MS.gene018224.t1 | MTR_5g028110 | 52.105 | 190 | 73 | 1 | 504 | 693 | 4 | 175 | 4.29e-53 | 181 |
MS.gene018224.t1 | MTR_2g438440 | 37.931 | 290 | 177 | 3 | 402 | 689 | 396 | 684 | 6.36e-52 | 192 |
MS.gene018224.t1 | MTR_2g438400 | 36.897 | 290 | 180 | 3 | 402 | 689 | 255 | 543 | 2.65e-51 | 187 |
MS.gene018224.t1 | MTR_3g452020 | 26.974 | 608 | 368 | 16 | 77 | 672 | 36 | 579 | 7.33e-51 | 187 |
MS.gene018224.t1 | MTR_3g455790 | 35.127 | 316 | 201 | 3 | 360 | 673 | 266 | 579 | 2.34e-50 | 186 |
MS.gene018224.t1 | MTR_2g438720 | 37.113 | 291 | 179 | 3 | 402 | 689 | 401 | 690 | 1.06e-49 | 186 |
MS.gene018224.t1 | MTR_2g438700 | 35.562 | 329 | 204 | 5 | 368 | 689 | 361 | 688 | 1.57e-49 | 185 |
MS.gene018224.t1 | MTR_5g028690 | 46.535 | 202 | 103 | 2 | 497 | 693 | 36 | 237 | 2.74e-49 | 173 |
MS.gene018224.t1 | MTR_2g020510 | 24.855 | 688 | 418 | 18 | 83 | 692 | 15 | 681 | 5.98e-48 | 180 |
MS.gene018224.t1 | MTR_2g438760 | 34.323 | 303 | 194 | 4 | 405 | 702 | 273 | 575 | 1.95e-46 | 174 |
MS.gene018224.t1 | MTR_2g438640 | 35.172 | 290 | 185 | 3 | 402 | 689 | 401 | 689 | 2.45e-44 | 170 |
MS.gene018224.t1 | MTR_3g452020 | 31.402 | 328 | 215 | 4 | 347 | 672 | 84 | 403 | 2.23e-43 | 162 |
MS.gene018224.t1 | MTR_2g020450 | 27.023 | 692 | 395 | 21 | 76 | 683 | 9 | 674 | 9.04e-42 | 162 |
MS.gene018224.t1 | MTR_5g085350 | 24.964 | 685 | 416 | 18 | 105 | 700 | 52 | 727 | 3.63e-41 | 160 |
MS.gene018224.t1 | MTR_2g438640 | 33.564 | 289 | 165 | 3 | 402 | 689 | 401 | 663 | 6.79e-39 | 154 |
MS.gene018224.t1 | MTR_5g085360 | 23.259 | 675 | 402 | 16 | 105 | 675 | 52 | 714 | 1.11e-38 | 153 |
MS.gene018224.t1 | MTR_3g058570 | 30.769 | 299 | 197 | 3 | 401 | 691 | 83 | 379 | 1.61e-36 | 142 |
MS.gene018224.t1 | MTR_5g028900 | 44.910 | 167 | 76 | 3 | 503 | 665 | 3 | 157 | 6.52e-35 | 130 |
MS.gene018224.t1 | MTR_2g020470 | 29.154 | 319 | 194 | 5 | 382 | 692 | 369 | 663 | 2.76e-34 | 139 |
MS.gene018224.t1 | MTR_5g085350 | 30.263 | 304 | 205 | 3 | 403 | 700 | 438 | 740 | 9.72e-34 | 138 |
MS.gene018224.t1 | MTR_5g028840 | 38.265 | 196 | 116 | 2 | 502 | 692 | 2 | 197 | 2.65e-33 | 127 |
MS.gene018224.t1 | MTR_2g017930 | 24.811 | 661 | 414 | 17 | 78 | 683 | 5 | 637 | 5.40e-33 | 135 |
MS.gene018224.t1 | MTR_5g028830 | 51.007 | 149 | 64 | 3 | 358 | 501 | 144 | 288 | 1.30e-32 | 128 |
MS.gene018224.t1 | MTR_5g085340 | 30.640 | 297 | 197 | 3 | 403 | 691 | 444 | 739 | 2.56e-32 | 134 |
MS.gene018224.t1 | MTR_3g050500 | 30.502 | 259 | 174 | 3 | 401 | 654 | 427 | 684 | 5.25e-29 | 124 |
MS.gene018224.t1 | MTR_5g028510 | 33.910 | 289 | 141 | 11 | 34 | 283 | 51 | 328 | 6.45e-28 | 115 |
MS.gene018224.t1 | MTR_3g051060 | 26.599 | 297 | 198 | 5 | 403 | 686 | 435 | 724 | 1.75e-27 | 119 |
MS.gene018224.t1 | MTR_2g438640 | 37.143 | 175 | 108 | 2 | 516 | 689 | 413 | 586 | 2.88e-27 | 117 |
MS.gene018224.t1 | MTR_6g021680 | 41.667 | 156 | 84 | 5 | 76 | 225 | 1 | 155 | 2.01e-25 | 104 |
MS.gene018224.t1 | MTR_1g113820 | 31.799 | 239 | 159 | 4 | 375 | 611 | 248 | 484 | 1.74e-23 | 105 |
MS.gene018224.t1 | MTR_5g028920 | 44.295 | 149 | 71 | 3 | 361 | 504 | 86 | 227 | 6.66e-23 | 99.0 |
MS.gene018224.t1 | MTR_1g113760 | 27.208 | 283 | 199 | 6 | 401 | 677 | 239 | 520 | 1.04e-19 | 93.6 |
MS.gene018224.t1 | MTR_2g438470 | 39.850 | 133 | 78 | 2 | 447 | 578 | 366 | 497 | 1.43e-18 | 89.7 |
MS.gene018224.t1 | MTR_1g113730 | 31.073 | 177 | 120 | 2 | 400 | 575 | 44 | 219 | 2.45e-16 | 81.6 |
MS.gene018224.t1 | MTR_2g438580 | 37.349 | 83 | 51 | 1 | 516 | 598 | 2 | 83 | 1.80e-13 | 66.6 |
MS.gene018224.t1 | MTR_6g016185 | 25.481 | 208 | 134 | 5 | 414 | 620 | 6 | 193 | 7.81e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018224.t1 | AT3G18670 | 33.005 | 609 | 354 | 14 | 92 | 687 | 68 | 635 | 8.77e-92 | 300 |
MS.gene018224.t1 | AT3G18670 | 40.525 | 343 | 199 | 5 | 348 | 687 | 240 | 580 | 2.31e-77 | 259 |
MS.gene018224.t1 | AT5G04700 | 31.579 | 589 | 344 | 13 | 110 | 689 | 116 | 654 | 1.21e-72 | 249 |
MS.gene018224.t1 | AT5G04690 | 29.868 | 606 | 362 | 16 | 92 | 689 | 94 | 644 | 3.52e-68 | 236 |
MS.gene018224.t1 | AT5G04680 | 29.836 | 610 | 364 | 15 | 110 | 689 | 103 | 678 | 4.08e-65 | 229 |
MS.gene018224.t1 | AT5G04690 | 29.770 | 608 | 346 | 19 | 92 | 689 | 94 | 630 | 1.38e-64 | 226 |
MS.gene018224.t1 | AT5G04680 | 30.326 | 521 | 307 | 10 | 181 | 689 | 50 | 526 | 7.35e-63 | 219 |
MS.gene018224.t1 | AT5G04680 | 29.236 | 602 | 349 | 14 | 110 | 689 | 103 | 649 | 8.31e-63 | 222 |
MS.gene018224.t1 | AT5G04730 | 29.923 | 518 | 301 | 12 | 183 | 689 | 121 | 587 | 4.50e-62 | 218 |
MS.gene018224.t1 | AT5G35810 | 40.484 | 289 | 161 | 5 | 402 | 679 | 35 | 323 | 2.59e-61 | 209 |
MS.gene018224.t1 | AT5G04690 | 37.725 | 334 | 201 | 5 | 358 | 689 | 282 | 610 | 1.05e-60 | 215 |
MS.gene018224.t1 | AT5G04680 | 29.070 | 602 | 336 | 15 | 110 | 689 | 103 | 635 | 7.37e-60 | 213 |
MS.gene018224.t1 | AT3G54065 | 46.512 | 172 | 86 | 2 | 488 | 653 | 8 | 179 | 9.23e-43 | 155 |
MS.gene018224.t1 | AT5G04700 | 26.933 | 401 | 236 | 12 | 110 | 503 | 116 | 466 | 9.94e-24 | 105 |
Find 119 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGACAACAATTGTTATTA+TGG | 0.098062 | 6.3:+11700950 | MS.gene018224:CDS |
TCCTTCAATAATGACGTATT+TGG | 0.133753 | 6.3:+11703796 | MS.gene018224:CDS |
CATGAAGGAGTTGGTTAAAA+TGG | 0.138035 | 6.3:+11700691 | MS.gene018224:CDS |
ACAACTTCCATGGACATATT+TGG | 0.165899 | 6.3:+11704272 | MS.gene018224:CDS |
TGCATCAATGCAGAAATATT+TGG | 0.215643 | 6.3:+11700992 | MS.gene018224:CDS |
GCCGCACCCGCAAGAGATTT+TGG | 0.225015 | 6.3:-11703752 | None:intergenic |
ACAGCGGAACTCGACTTAAT+TGG | 0.233127 | 6.3:+11702165 | MS.gene018224:CDS |
ACCTGATCGGCAAAGATCTA+TGG | 0.245206 | 6.3:+11700300 | MS.gene018224:CDS |
AAGAGAACTTCAATGGTTTA+AGG | 0.248534 | 6.3:+11704376 | MS.gene018224:CDS |
CAATGTACGCGGCCTATATA+TGG | 0.275915 | 6.3:+11702116 | MS.gene018224:CDS |
CTACACCTCGCAGCTGAATT+AGG | 0.282716 | 6.3:+11704305 | MS.gene018224:CDS |
GCGGCAGCTTTCACTGTTCC+AGG | 0.293026 | 6.3:+11705161 | MS.gene018224:CDS |
TTGACAACAATTGTTATTAT+GGG | 0.317758 | 6.3:+11700951 | MS.gene018224:CDS |
TATGAGATAGAAAGCCAAAA+AGG | 0.362259 | 6.3:+11704245 | MS.gene018224:CDS |
TTTGCCTTCAAGGTCTATGT+AGG | 0.372839 | 6.3:-11702345 | None:intergenic |
AGTCATTTCTTTGTGACCCT+TGG | 0.382494 | 6.3:-11700891 | None:intergenic |
CCTTCAATAATGACGTATTT+GGG | 0.382890 | 6.3:+11703797 | MS.gene018224:CDS |
TTGGCTTCCTTGCACATCAT+AGG | 0.386494 | 6.3:-11705002 | None:intergenic |
CCCATAGATCTTTGCCGATC+AGG | 0.387223 | 6.3:-11700301 | None:intergenic |
TTGCCCACTAAGTTATTGTT+TGG | 0.387944 | 6.3:+11705347 | MS.gene018224:CDS |
TTATCCTGATTGTTTCCTCC+TGG | 0.391280 | 6.3:-11705179 | None:intergenic |
ATCAAAGCTAATGATGATAA+AGG | 0.392310 | 6.3:+11700842 | MS.gene018224:CDS |
CAAGAGATAATTACTTGGAT+TGG | 0.400027 | 6.3:+11700258 | MS.gene018224:CDS |
CCCAAATACGTCATTATTGA+AGG | 0.416028 | 6.3:-11703797 | None:intergenic |
AGCAAGTTCTTTCACAATTG+TGG | 0.429736 | 6.3:+11705112 | MS.gene018224:CDS |
CATCATTACTATCATGTTTG+CGG | 0.429986 | 6.3:+11705142 | MS.gene018224:CDS |
GCACTTGCTCTCATGCTAAA+GGG | 0.430287 | 6.3:+11705422 | MS.gene018224:CDS |
GGAGGAAACAATCAGGATAA+AGG | 0.430710 | 6.3:+11705182 | MS.gene018224:CDS |
ATGTTACAAGCAGCCATGTA+TGG | 0.439973 | 6.3:+11704095 | MS.gene018224:CDS |
TTTGTGAAATCTTATTCCAT+TGG | 0.440587 | 6.3:+11705545 | MS.gene018224:CDS |
GAATCTCACCTGCTAGGTAA+TGG | 0.441871 | 6.3:-11703998 | None:intergenic |
TTGTGAAATCTTATTCCATT+GGG | 0.445312 | 6.3:+11705546 | MS.gene018224:CDS |
CATTGCTGACAGAGAAAGAC+TGG | 0.445383 | 6.3:+11700717 | MS.gene018224:CDS |
TCAAGTGCATATACTATTCC+AGG | 0.445424 | 6.3:+11702398 | MS.gene018224:CDS |
GCAAGTTCTTTCACAATTGT+GGG | 0.445923 | 6.3:+11705113 | MS.gene018224:CDS |
GCCAAAATCTCTTGCGGGTG+CGG | 0.447884 | 6.3:+11703751 | MS.gene018224:CDS |
AGATGCAAAGAGAACTTCAA+TGG | 0.449093 | 6.3:+11704369 | MS.gene018224:CDS |
ATATGAGCTAATCCATATAT+AGG | 0.453202 | 6.3:-11702128 | None:intergenic |
ATGAAGGAGTTGGTTAAAAT+GGG | 0.454550 | 6.3:+11700692 | MS.gene018224:CDS |
TGCACTTGCTCTCATGCTAA+AGG | 0.454625 | 6.3:+11705421 | MS.gene018224:CDS |
AATAACAGCAATAGCATCTT+CGG | 0.455208 | 6.3:+11705460 | MS.gene018224:CDS |
TTGCATCTGAAGAGCAGCAT+TGG | 0.456188 | 6.3:-11704354 | None:intergenic |
TTGATGAGATTCATAACTAA+GGG | 0.460213 | 6.3:-11702096 | None:intergenic |
TCCATGGCCCATAAAAGGTC+AGG | 0.467009 | 6.3:-11704155 | None:intergenic |
GGATCGACGTCCACGATATG+AGG | 0.469464 | 6.3:-11704333 | None:intergenic |
CTTCACGTTGCAGTTGATGC+AGG | 0.470329 | 6.3:+11700656 | MS.gene018224:CDS |
AGGTTGCCAAAATCTCTTGC+GGG | 0.470766 | 6.3:+11703746 | MS.gene018224:CDS |
TTGGTTGCAGCTAGAAGTAC+TGG | 0.474184 | 6.3:-11700872 | None:intergenic |
AAAAGTCGTCTTCGAAAGGT+TGG | 0.477865 | 6.3:+11700627 | MS.gene018224:CDS |
GATTTAGCAGCAAGCGCAAA+AGG | 0.481082 | 6.3:-11700752 | None:intergenic |
CCACCCTACATAGACCTTGA+AGG | 0.481203 | 6.3:+11702341 | MS.gene018224:CDS |
ATTGATGAGATTCATAACTA+AGG | 0.487645 | 6.3:-11702097 | None:intergenic |
TTGCCTTCAAGGTCTATGTA+GGG | 0.494676 | 6.3:-11702344 | None:intergenic |
CATGAACAGCTTATCAATGA+AGG | 0.496394 | 6.3:+11705068 | MS.gene018224:CDS |
GACCTCCTTGCTCAATATCA+TGG | 0.504377 | 6.3:-11700508 | None:intergenic |
GTGAACATAAACACTATGAT+TGG | 0.507568 | 6.3:-11705488 | None:intergenic |
TCTTACAAGAGATAATTACT+TGG | 0.523523 | 6.3:+11700253 | MS.gene018224:CDS |
GCTGTAAATATTGCATCCAC+TGG | 0.524151 | 6.3:+11700215 | MS.gene018224:CDS |
TATCAATGAAGGTCGACAAT+GGG | 0.524600 | 6.3:+11705079 | MS.gene018224:CDS |
AAGGCCAAACAATAACTTAG+TGG | 0.524891 | 6.3:-11705351 | None:intergenic |
TGACAACAATTGTTATTATG+GGG | 0.526403 | 6.3:+11700952 | MS.gene018224:CDS |
ATTATTTCCAAATATGTCCA+TGG | 0.526418 | 6.3:-11704279 | None:intergenic |
TGAGTTTATAAATTCAATGA+GGG | 0.527022 | 6.3:+11704124 | MS.gene018224:CDS |
CAGGTTGCCAAAATCTCTTG+CGG | 0.531478 | 6.3:+11703745 | MS.gene018224:CDS |
AAAATGAACCATTACCTAGC+AGG | 0.533843 | 6.3:+11703990 | MS.gene018224:CDS |
AAAAGGATTGACAACTTCCA+TGG | 0.535445 | 6.3:+11704262 | MS.gene018224:CDS |
CAGACAAGAAAATTGTGAAA+AGG | 0.535849 | 6.3:-11705370 | None:intergenic |
CCTGATCGGCAAAGATCTAT+GGG | 0.547468 | 6.3:+11700301 | MS.gene018224:CDS |
AGTACTTCTAGCTGCAACCA+AGG | 0.548273 | 6.3:+11700874 | MS.gene018224:CDS |
AGATAAAATCATGAAGGAGT+TGG | 0.549190 | 6.3:+11700682 | MS.gene018224:CDS |
AGATGAAAACCTCTGAAAAG+AGG | 0.550040 | 6.3:-11705520 | None:intergenic |
GATTCTTACATCGCGTTATG+CGG | 0.550751 | 6.3:+11705304 | MS.gene018224:CDS |
GTGTAACAGCACAAGAAGCT+TGG | 0.550774 | 6.3:+11700444 | MS.gene018224:intron |
TGTTCCAGGAGGAAACAATC+AGG | 0.550808 | 6.3:+11705175 | MS.gene018224:CDS |
GTATTTGTGTACTATCATGT+TGG | 0.555363 | 6.3:-11702073 | None:intergenic |
TTGAGTTTATAAATTCAATG+AGG | 0.557227 | 6.3:+11704123 | MS.gene018224:CDS |
TCTCAAAAGTCGTCTTCGAA+AGG | 0.559029 | 6.3:+11700623 | MS.gene018224:CDS |
CAGAATCAGAGTTACATCAA+TGG | 0.564019 | 6.3:+11704057 | MS.gene018224:CDS |
CTATGGGACGATATTGTTGA+GGG | 0.564455 | 6.3:+11700317 | MS.gene018224:CDS |
CACTTGCTCTCATGCTAAAG+GGG | 0.570722 | 6.3:+11705423 | MS.gene018224:CDS |
TCTTACATCGCGTTATGCGG+AGG | 0.571666 | 6.3:+11705307 | MS.gene018224:CDS |
ATGATACAGAAACTGTTGAA+TGG | 0.574698 | 6.3:+11700780 | MS.gene018224:CDS |
AAACTCAATAATTCCATACA+TGG | 0.578265 | 6.3:-11704108 | None:intergenic |
ATTACAATCGAATCACAAGA+TGG | 0.586281 | 6.3:+11702371 | MS.gene018224:CDS |
TCATGCTAAAGGGGTACCGA+TGG | 0.588124 | 6.3:+11705432 | MS.gene018224:CDS |
CGACGTCCACGATATGAGGA+AGG | 0.589637 | 6.3:-11704329 | None:intergenic |
GTTCCGCTGTGAAATGCGGT+AGG | 0.591679 | 6.3:-11702152 | None:intergenic |
AGGCCAAACAATAACTTAGT+GGG | 0.592143 | 6.3:-11705350 | None:intergenic |
TTACTCCATACAGGCAGTAG+AGG | 0.593018 | 6.3:+11704971 | MS.gene018224:intron |
CCTTCAAGGTCTATGTAGGG+TGG | 0.596916 | 6.3:-11702341 | None:intergenic |
TCGAGTTCCGCTGTGAAATG+CGG | 0.597338 | 6.3:-11702156 | None:intergenic |
TTGCTGTTATTATGATCCAT+CGG | 0.603265 | 6.3:-11705448 | None:intergenic |
TCTATGGGACGATATTGTTG+AGG | 0.605390 | 6.3:+11700316 | MS.gene018224:CDS |
ATCAGAGTTACATCAATGGT+CGG | 0.610144 | 6.3:+11704061 | MS.gene018224:CDS |
TACTCCATACAGGCAGTAGA+GGG | 0.612908 | 6.3:+11704972 | MS.gene018224:intron |
AGGACAAGATAAAATCATGA+AGG | 0.613442 | 6.3:+11700676 | MS.gene018224:CDS |
GTACTTCTAGCTGCAACCAA+GGG | 0.616398 | 6.3:+11700875 | MS.gene018224:CDS |
TTATCAATGAAGGTCGACAA+TGG | 0.617601 | 6.3:+11705078 | MS.gene018224:CDS |
GCAGACCATGATATTGAGCA+AGG | 0.623158 | 6.3:+11700503 | MS.gene018224:CDS |
TTCCGCTGTGAAATGCGGTA+GGG | 0.624946 | 6.3:-11702151 | None:intergenic |
TTAGGCCCTTCCTCATATCG+TGG | 0.627852 | 6.3:+11704323 | MS.gene018224:CDS |
ATGTCTTACTTGCAGCTGTG+TGG | 0.645549 | 6.3:+11702315 | MS.gene018224:intron |
GTTGAATGGATGCTAAACAA+AGG | 0.646423 | 6.3:+11700794 | MS.gene018224:CDS |
AACTTCAAGAACTATTCCAG+TGG | 0.650411 | 6.3:-11700231 | None:intergenic |
GAATGGATGCTAAACAAAGG+AGG | 0.650958 | 6.3:+11700797 | MS.gene018224:CDS |
CTTGTGAAGAATTACCTGAT+CGG | 0.651726 | 6.3:+11700287 | MS.gene018224:CDS |
GACGTCCACGATATGAGGAA+GGG | 0.656666 | 6.3:-11704328 | None:intergenic |
CTGACAGAGAAAGACTGGGA+GGG | 0.663224 | 6.3:+11700722 | MS.gene018224:CDS |
GGAACTCGACTTAATTGGTG+TGG | 0.679458 | 6.3:+11702170 | MS.gene018224:CDS |
CATTGTGCCTATGATGTGCA+AGG | 0.688131 | 6.3:+11704995 | MS.gene018224:CDS |
GCAGCTTTCACTGTTCCAGG+AGG | 0.688478 | 6.3:+11705164 | MS.gene018224:CDS |
TGACATCGAGATGTTTCATG+TGG | 0.689107 | 6.3:+11700538 | MS.gene018224:CDS |
TGATGAGATTCATAACTAAG+GGG | 0.700194 | 6.3:-11702095 | None:intergenic |
GCTGACAGAGAAAGACTGGG+AGG | 0.709933 | 6.3:+11700721 | MS.gene018224:CDS |
ATGAATCTCATCAATGTACG+CGG | 0.712607 | 6.3:+11702105 | MS.gene018224:CDS |
GACCATGATATTGAGCAAGG+AGG | 0.713183 | 6.3:+11700506 | MS.gene018224:CDS |
ATTGCTGACAGAGAAAGACT+GGG | 0.714056 | 6.3:+11700718 | MS.gene018224:CDS |
ATCCCTACCGCATTTCACAG+CGG | 0.735505 | 6.3:+11702149 | MS.gene018224:CDS |
AAGGGCCTAATTCAGCTGCG+AGG | 0.748796 | 6.3:-11704310 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAAATTTTTTCTCTTA+AGG | + | chr6.3:11702781-11702800 | MS.gene018224:intron | 10.0% |
!!! | TAATTATTTGCATTTTATAT+TGG | + | chr6.3:11702026-11702045 | MS.gene018224:intron | 10.0% |
!!! | TATTATTGTATTTTTTTTAG+AGG | - | chr6.3:11702672-11702691 | None:intergenic | 10.0% |
!!! | AAACTTTTAGAAAGATTAAT+AGG | - | chr6.3:11703242-11703261 | None:intergenic | 15.0% |
!!! | AAGATGTTCATAAATTTTTT+TGG | + | chr6.3:11704929-11704948 | MS.gene018224:intron | 15.0% |
!!! | TCTTTTGTTTAAATACTTTT+TGG | + | chr6.3:11701035-11701054 | MS.gene018224:intron | 15.0% |
!!! | TTGTTTAGTATTGAAATATT+CGG | - | chr6.3:11703632-11703651 | None:intergenic | 15.0% |
!! | AACAAATAATCTATGCAAAA+AGG | - | chr6.3:11703909-11703928 | None:intergenic | 20.0% |
!! | AATATTTCACCCAAAAATAA+AGG | - | chr6.3:11702602-11702621 | None:intergenic | 20.0% |
!! | ACAAATAATCTATGCAAAAA+GGG | - | chr6.3:11703908-11703927 | None:intergenic | 20.0% |
!! | CAAAATTAAAATTGTCTATG+TGG | - | chr6.3:11703332-11703351 | None:intergenic | 20.0% |
!! | CTACAAAACTTTACTTAAAT+AGG | + | chr6.3:11703146-11703165 | MS.gene018224:intron | 20.0% |
!! | TATTAATTATTACTCCATAC+AGG | + | chr6.3:11704962-11704981 | MS.gene018224:intron | 20.0% |
!! | TCTTTAAACATAGAAATGAA+TGG | - | chr6.3:11703008-11703027 | None:intergenic | 20.0% |
!! | TGAGTTTATAAATTCAATGA+GGG | + | chr6.3:11704124-11704143 | MS.gene018224:CDS | 20.0% |
!! | TGTAAAAAAATTACACCTTA+AGG | - | chr6.3:11702977-11702996 | None:intergenic | 20.0% |
!! | TGTATCACATATATAATGTT+AGG | - | chr6.3:11703707-11703726 | None:intergenic | 20.0% |
!! | TGTTATACATGTTGATATTA+GGG | - | chr6.3:11704868-11704887 | None:intergenic | 20.0% |
!! | TTGAGTTTATAAATTCAATG+AGG | + | chr6.3:11704123-11704142 | MS.gene018224:CDS | 20.0% |
!!! | ACCTTTATTTTTCACTAAAT+TGG | + | chr6.3:11701063-11701082 | MS.gene018224:intron | 20.0% |
!!! | AGGATGAATATTTTTTTGAA+GGG | - | chr6.3:11702652-11702671 | None:intergenic | 20.0% |
!!! | CATCAGTTTTAATGTTTATT+GGG | + | chr6.3:11705282-11705301 | MS.gene018224:CDS | 20.0% |
!!! | GAAAAAAAGATTGATAATGT+AGG | + | chr6.3:11705571-11705590 | MS.gene018224:CDS | 20.0% |
!!! | GAATTTTTATTGAGTATCAA+TGG | - | chr6.3:11702250-11702269 | None:intergenic | 20.0% |
!!! | GTTTTAGTCGTTTTTTTTTT+TGG | + | chr6.3:11704899-11704918 | MS.gene018224:intron | 20.0% |
!!! | TCATCAGTTTTAATGTTTAT+TGG | + | chr6.3:11705281-11705300 | MS.gene018224:CDS | 20.0% |
!!! | TCTATTCATCCTTTATTTTT+GGG | + | chr6.3:11702590-11702609 | MS.gene018224:intron | 20.0% |
!!! | TGTTTAGTATTGAAATATTC+GGG | - | chr6.3:11703631-11703650 | None:intergenic | 20.0% |
!!! | TTCTATTCATCCTTTATTTT+TGG | + | chr6.3:11702589-11702608 | MS.gene018224:intron | 20.0% |
!!! | TTGACAACAATTGTTATTAT+GGG | + | chr6.3:11700951-11700970 | MS.gene018224:CDS | 20.0% |
! | AAACTCAATAATTCCATACA+TGG | - | chr6.3:11704111-11704130 | None:intergenic | 25.0% |
! | ACACCATGTCAAATTAATAT+AGG | - | chr6.3:11701260-11701279 | None:intergenic | 25.0% |
! | ATATATGTGATACATCCTTT+AGG | + | chr6.3:11703713-11703732 | MS.gene018224:intron | 25.0% |
! | ATATGAGCTAATCCATATAT+AGG | - | chr6.3:11702131-11702150 | None:intergenic | 25.0% |
! | ATCAAAGCTAATGATGATAA+AGG | + | chr6.3:11700842-11700861 | MS.gene018224:CDS | 25.0% |
! | ATGAATAGAAACCTTAGAAA+TGG | - | chr6.3:11702579-11702598 | None:intergenic | 25.0% |
! | ATTATTTCCAAATATGTCCA+TGG | - | chr6.3:11704282-11704301 | None:intergenic | 25.0% |
! | ATTGATGAGATTCATAACTA+AGG | - | chr6.3:11702100-11702119 | None:intergenic | 25.0% |
! | CACCATGTCAAATTAATATA+GGG | - | chr6.3:11701259-11701278 | None:intergenic | 25.0% |
! | CCATAATATCATAGACTAAA+AGG | - | chr6.3:11701844-11701863 | None:intergenic | 25.0% |
! | GAAATCATTGGAAAATTGAA+AGG | - | chr6.3:11703945-11703964 | None:intergenic | 25.0% |
! | GCCAATTTAGTGAAAAATAA+AGG | - | chr6.3:11701067-11701086 | None:intergenic | 25.0% |
! | GTGTTATACATGTTGATATT+AGG | - | chr6.3:11704869-11704888 | None:intergenic | 25.0% |
! | TATCTTTACATGTACATACA+TGG | + | chr6.3:11701768-11701787 | MS.gene018224:intron | 25.0% |
! | TCTTACAAGAGATAATTACT+TGG | + | chr6.3:11700253-11700272 | MS.gene018224:CDS | 25.0% |
! | TTGATGAGATTCATAACTAA+GGG | - | chr6.3:11702099-11702118 | None:intergenic | 25.0% |
! | TTGTGAAATCTTATTCCATT+GGG | + | chr6.3:11705546-11705565 | MS.gene018224:CDS | 25.0% |
! | TTTGATAAGAACCATTTCTA+AGG | + | chr6.3:11702565-11702584 | MS.gene018224:intron | 25.0% |
! | TTTGTGAAATCTTATTCCAT+TGG | + | chr6.3:11705545-11705564 | MS.gene018224:CDS | 25.0% |
!! | ATAAACTTATGTTGGTCTAT+TGG | + | chr6.3:11701622-11701641 | MS.gene018224:intron | 25.0% |
!! | ATCGTCAATTATTGTGATTT+TGG | + | chr6.3:11701156-11701175 | MS.gene018224:intron | 25.0% |
!! | ATTTCATTATGTTTCTGACT+AGG | + | chr6.3:11704688-11704707 | MS.gene018224:intron | 25.0% |
!! | ATTTTACTACTATGACCTTA+AGG | + | chr6.3:11702959-11702978 | MS.gene018224:intron | 25.0% |
!! | CCTTTTAGTCTATGATATTA+TGG | + | chr6.3:11701841-11701860 | MS.gene018224:intron | 25.0% |
!! | CTTGACAACAATTGTTATTA+TGG | + | chr6.3:11700950-11700969 | MS.gene018224:CDS | 25.0% |
!! | GCATTTTTACCTAAAAAGAT+AGG | - | chr6.3:11705212-11705231 | None:intergenic | 25.0% |
!! | TAAACTTATGTTGGTCTATT+GGG | + | chr6.3:11701623-11701642 | MS.gene018224:intron | 25.0% |
!! | TACCCTATATTAATTTGACA+TGG | + | chr6.3:11701254-11701273 | MS.gene018224:intron | 25.0% |
!! | TGACAACAATTGTTATTATG+GGG | + | chr6.3:11700952-11700971 | MS.gene018224:CDS | 25.0% |
!! | TTCTTAACATCTGAAATCAT+TGG | - | chr6.3:11703957-11703976 | None:intergenic | 25.0% |
!! | TTTCACAATTTTTGCACTTA+AGG | - | chr6.3:11701888-11701907 | None:intergenic | 25.0% |
!!! | ATCATTAGCTTTGATTTTCA+TGG | - | chr6.3:11700837-11700856 | None:intergenic | 25.0% |
!!! | ATGGTCTTATGCTAAATATT+TGG | + | chr6.3:11701787-11701806 | MS.gene018224:intron | 25.0% |
!!! | ATTTTGGTGTAACTAGAAAT+AGG | + | chr6.3:11701172-11701191 | MS.gene018224:intron | 25.0% |
!!! | CACTATATTGCTATTTTTGT+TGG | + | chr6.3:11701683-11701702 | MS.gene018224:intron | 25.0% |
!!! | CCATTTTTTGATTTCCATTT+CGG | - | chr6.3:11700362-11700381 | None:intergenic | 25.0% |
!!! | GAGGATGAATATTTTTTTGA+AGG | - | chr6.3:11702653-11702672 | None:intergenic | 25.0% |
!!! | GGATGAATATTTTTTTGAAG+GGG | - | chr6.3:11702651-11702670 | None:intergenic | 25.0% |
!!! | TTTTGGTGTAACTAGAAATA+GGG | + | chr6.3:11701173-11701192 | MS.gene018224:intron | 25.0% |
AAAAGGGAGGAAAATCAATT+AGG | - | chr6.3:11703892-11703911 | None:intergenic | 30.0% | |
AAATTGTCTATGTGGATAAG+TGG | - | chr6.3:11703324-11703343 | None:intergenic | 30.0% | |
AACCTGAAAAATTGACCTAA+AGG | - | chr6.3:11703731-11703750 | None:intergenic | 30.0% | |
AAGAGAACTTCAATGGTTTA+AGG | + | chr6.3:11704376-11704395 | MS.gene018224:CDS | 30.0% | |
AATAACAGCAATAGCATCTT+CGG | + | chr6.3:11705460-11705479 | MS.gene018224:CDS | 30.0% | |
AATAATCTATGCAAAAAGGG+AGG | - | chr6.3:11703905-11703924 | None:intergenic | 30.0% | |
ACACTCAAGTACAGTTATAT+AGG | + | chr6.3:11702445-11702464 | MS.gene018224:intron | 30.0% | |
AGATAAAATCATGAAGGAGT+TGG | + | chr6.3:11700682-11700701 | MS.gene018224:CDS | 30.0% | |
AGGACAAGATAAAATCATGA+AGG | + | chr6.3:11700676-11700695 | MS.gene018224:CDS | 30.0% | |
ATATCAACAATCTCAACTTG+AGG | - | chr6.3:11701593-11701612 | None:intergenic | 30.0% | |
ATGATACAGAAACTGTTGAA+TGG | + | chr6.3:11700780-11700799 | MS.gene018224:CDS | 30.0% | |
ATTACAATCGAATCACAAGA+TGG | + | chr6.3:11702371-11702390 | MS.gene018224:CDS | 30.0% | |
ATTAGGGATAATGAAAAGAG+AGG | - | chr6.3:11704852-11704871 | None:intergenic | 30.0% | |
ATTCGGGTAATTCTTTAACA+AGG | - | chr6.3:11703615-11703634 | None:intergenic | 30.0% | |
ATTTGAATCTAAGTCAGGAA+TGG | - | chr6.3:11701331-11701350 | None:intergenic | 30.0% | |
CAAGAGATAATTACTTGGAT+TGG | + | chr6.3:11700258-11700277 | MS.gene018224:CDS | 30.0% | |
CAGACAAGAAAATTGTGAAA+AGG | - | chr6.3:11705373-11705392 | None:intergenic | 30.0% | |
CATCATTACTATCATGTTTG+CGG | + | chr6.3:11705142-11705161 | MS.gene018224:CDS | 30.0% | |
CCGAAATGGAAATCAAAAAA+TGG | + | chr6.3:11700359-11700378 | MS.gene018224:intron | 30.0% | |
CCTGTCTTGTAAAAATACAT+TGG | + | chr6.3:11701214-11701233 | MS.gene018224:intron | 30.0% | |
CCTTCAATAATGACGTATTT+GGG | + | chr6.3:11703797-11703816 | MS.gene018224:CDS | 30.0% | |
GGTAACTGTAATATCATTGA+TGG | - | chr6.3:11701823-11701842 | None:intergenic | 30.0% | |
GTATTTGTGTACTATCATGT+TGG | - | chr6.3:11702076-11702095 | None:intergenic | 30.0% | |
GTGAACATAAACACTATGAT+TGG | - | chr6.3:11705491-11705510 | None:intergenic | 30.0% | |
GTGTATAAGCAAGAAGATAT+TGG | + | chr6.3:11702275-11702294 | MS.gene018224:intron | 30.0% | |
TATGAGATAGAAAGCCAAAA+AGG | + | chr6.3:11704245-11704264 | MS.gene018224:CDS | 30.0% | |
TCACTATTTGAATCTAAGTC+AGG | - | chr6.3:11701336-11701355 | None:intergenic | 30.0% | |
TCCTTCAATAATGACGTATT+TGG | + | chr6.3:11703796-11703815 | MS.gene018224:CDS | 30.0% | |
TCTTCTTGCTTATACACTTT+AGG | - | chr6.3:11702272-11702291 | None:intergenic | 30.0% | |
TGATGAGATTCATAACTAAG+GGG | - | chr6.3:11702098-11702117 | None:intergenic | 30.0% | |
TGCATCAATGCAGAAATATT+TGG | + | chr6.3:11700992-11701011 | MS.gene018224:CDS | 30.0% | |
TGCATTTAACTGAACAACTT+GGG | + | chr6.3:11701923-11701942 | MS.gene018224:intron | 30.0% | |
TTAGGGATAATGAAAAGAGA+GGG | - | chr6.3:11704851-11704870 | None:intergenic | 30.0% | |
TTGCATTTAACTGAACAACT+TGG | + | chr6.3:11701922-11701941 | MS.gene018224:intron | 30.0% | |
! | ATCAGAACTAATTTGTGATC+GGG | - | chr6.3:11701430-11701449 | None:intergenic | 30.0% |
! | ATCCTTTAGGTCAATTTTTC+AGG | + | chr6.3:11703726-11703745 | MS.gene018224:intron | 30.0% |
! | ATGAAGGAGTTGGTTAAAAT+GGG | + | chr6.3:11700692-11700711 | MS.gene018224:CDS | 30.0% |
! | GATAAGCTGTTCATGATTTT+TGG | - | chr6.3:11705063-11705082 | None:intergenic | 30.0% |
! | GATCAGAACTAATTTGTGAT+CGG | - | chr6.3:11701431-11701450 | None:intergenic | 30.0% |
! | TGAGTTGACAACAAAAATGA+TGG | + | chr6.3:11701383-11701402 | MS.gene018224:intron | 30.0% |
! | TTGCTGTTATTATGATCCAT+CGG | - | chr6.3:11705451-11705470 | None:intergenic | 30.0% |
! | TTGTAATTCTTTTGCCTTCA+AGG | - | chr6.3:11702358-11702377 | None:intergenic | 30.0% |
! | TTTCACAATTTTCTTGTCTG+TGG | + | chr6.3:11705373-11705392 | MS.gene018224:CDS | 30.0% |
!! | ATTTTGTTTATCAGACGTGA+TGG | + | chr6.3:11700590-11700609 | MS.gene018224:CDS | 30.0% |
!! | CCAATGTATTTTTACAAGAC+AGG | - | chr6.3:11701217-11701236 | None:intergenic | 30.0% |
!! | CTTTGATTTTCATGGTTAGT+AGG | - | chr6.3:11700829-11700848 | None:intergenic | 30.0% |
!! | GTATTTTTACAAGACAGGAA+GGG | - | chr6.3:11701212-11701231 | None:intergenic | 30.0% |
!! | TATTTTTACAAGACAGGAAG+GGG | - | chr6.3:11701211-11701230 | None:intergenic | 30.0% |
!! | TGTATTTTTACAAGACAGGA+AGG | - | chr6.3:11701213-11701232 | None:intergenic | 30.0% |
!! | TTTTTGGTAAATAATTCGCG+AGG | - | chr6.3:11705047-11705066 | None:intergenic | 30.0% |
!!! | CAATCTTTTTTTCTTCCCAA+TGG | - | chr6.3:11705564-11705583 | None:intergenic | 30.0% |
!!! | TGTGGACAGATTTTTTACAA+TGG | + | chr6.3:11702188-11702207 | MS.gene018224:CDS | 30.0% |
!!! | TTCTTTTTTCTAAGACTCGA+TGG | + | chr6.3:11700918-11700937 | MS.gene018224:CDS | 30.0% |
AAAAGGATTGACAACTTCCA+TGG | + | chr6.3:11704262-11704281 | MS.gene018224:CDS | 35.0% | |
AAAATGAACCATTACCTAGC+AGG | + | chr6.3:11703990-11704009 | MS.gene018224:CDS | 35.0% | |
AAACGACTAAAACATGTCGT+TGG | - | chr6.3:11704892-11704911 | None:intergenic | 35.0% | |
AACGACTAAAACATGTCGTT+GGG | - | chr6.3:11704891-11704910 | None:intergenic | 35.0% | |
AACTTCAAGAACTATTCCAG+TGG | - | chr6.3:11700234-11700253 | None:intergenic | 35.0% | |
AAGAGTCTCGCTAATTAATG+TGG | + | chr6.3:11702479-11702498 | MS.gene018224:intron | 35.0% | |
AAGGCCAAACAATAACTTAG+TGG | - | chr6.3:11705354-11705373 | None:intergenic | 35.0% | |
AATCTTGATCTGCATTCAAC+TGG | + | chr6.3:11703473-11703492 | MS.gene018224:intron | 35.0% | |
AATGAAAAGAGAGGGTTGTT+GGG | - | chr6.3:11704843-11704862 | None:intergenic | 35.0% | |
ACAACTTCCATGGACATATT+TGG | + | chr6.3:11704272-11704291 | MS.gene018224:CDS | 35.0% | |
AGATCTCAGGAACAATCTTA+TGG | + | chr6.3:11701128-11701147 | MS.gene018224:intron | 35.0% | |
AGATGCAAAGAGAACTTCAA+TGG | + | chr6.3:11704369-11704388 | MS.gene018224:CDS | 35.0% | |
AGCAAGTTCTTTCACAATTG+TGG | + | chr6.3:11705112-11705131 | MS.gene018224:CDS | 35.0% | |
AGGCCAAACAATAACTTAGT+GGG | - | chr6.3:11705353-11705372 | None:intergenic | 35.0% | |
ATACTATTCCAGGTGTGTTT+AGG | + | chr6.3:11702408-11702427 | MS.gene018224:intron | 35.0% | |
ATCAGAGTTACATCAATGGT+CGG | + | chr6.3:11704061-11704080 | MS.gene018224:CDS | 35.0% | |
ATGAATCTCATCAATGTACG+CGG | + | chr6.3:11702105-11702124 | MS.gene018224:CDS | 35.0% | |
CAGAATCAGAGTTACATCAA+TGG | + | chr6.3:11704057-11704076 | MS.gene018224:CDS | 35.0% | |
CATGAACAGCTTATCAATGA+AGG | + | chr6.3:11705068-11705087 | MS.gene018224:CDS | 35.0% | |
CATTTAACTGAACAACTTGG+GGG | + | chr6.3:11701925-11701944 | MS.gene018224:intron | 35.0% | |
CCCAAATACGTCATTATTGA+AGG | - | chr6.3:11703800-11703819 | None:intergenic | 35.0% | |
CTTGTGAAGAATTACCTGAT+CGG | + | chr6.3:11700287-11700306 | MS.gene018224:CDS | 35.0% | |
GACCAACATAAGTTTATGAG+TGG | - | chr6.3:11701619-11701638 | None:intergenic | 35.0% | |
GATCTCAGGAACAATCTTAT+GGG | + | chr6.3:11701129-11701148 | MS.gene018224:intron | 35.0% | |
GCAAGTTCTTTCACAATTGT+GGG | + | chr6.3:11705113-11705132 | MS.gene018224:CDS | 35.0% | |
GCATTTAACTGAACAACTTG+GGG | + | chr6.3:11701924-11701943 | MS.gene018224:intron | 35.0% | |
GTCCACTCATAAACTTATGT+TGG | + | chr6.3:11701614-11701633 | MS.gene018224:intron | 35.0% | |
GTTGAATGGATGCTAAACAA+AGG | + | chr6.3:11700794-11700813 | MS.gene018224:CDS | 35.0% | |
TAATGAAAAGAGAGGGTTGT+TGG | - | chr6.3:11704844-11704863 | None:intergenic | 35.0% | |
TATCAATGAAGGTCGACAAT+GGG | + | chr6.3:11705079-11705098 | MS.gene018224:CDS | 35.0% | |
TCAAGTGCATATACTATTCC+AGG | + | chr6.3:11702398-11702417 | MS.gene018224:CDS | 35.0% | |
TCGATACAAAACATCCGAAA+TGG | + | chr6.3:11700345-11700364 | MS.gene018224:intron | 35.0% | |
TGTCATTAAACAATGCCCTA+GGG | + | chr6.3:11704598-11704617 | MS.gene018224:intron | 35.0% | |
TTATCAATGAAGGTCGACAA+TGG | + | chr6.3:11705078-11705097 | MS.gene018224:CDS | 35.0% | |
TTGCCCACTAAGTTATTGTT+TGG | + | chr6.3:11705347-11705366 | MS.gene018224:CDS | 35.0% | |
TTTCATGTGGCAGTGAAAAA+AGG | + | chr6.3:11700551-11700570 | MS.gene018224:CDS | 35.0% | |
! | AAAGGAACGCCTATCTTTTT+AGG | + | chr6.3:11705200-11705219 | MS.gene018224:CDS | 35.0% |
! | AAGCAAATCCTGACCTTTTA+TGG | + | chr6.3:11704147-11704166 | MS.gene018224:CDS | 35.0% |
! | ACAACTTGGGGGATTTTAAA+AGG | + | chr6.3:11701936-11701955 | MS.gene018224:intron | 35.0% |
! | AGATGAAAACCTCTGAAAAG+AGG | - | chr6.3:11705523-11705542 | None:intergenic | 35.0% |
! | AGCAAATCCTGACCTTTTAT+GGG | + | chr6.3:11704148-11704167 | MS.gene018224:CDS | 35.0% |
! | CATGAAGGAGTTGGTTAAAA+TGG | + | chr6.3:11700691-11700710 | MS.gene018224:CDS | 35.0% |
! | TGGAAGTTGTCAATCCTTTT+TGG | - | chr6.3:11704262-11704281 | None:intergenic | 35.0% |
!! | AATTAGTTCTGATCATGCCA+TGG | + | chr6.3:11701437-11701456 | MS.gene018224:intron | 35.0% |
!! | TGCATTTTAACCCTTCCTTT+TGG | - | chr6.3:11704634-11704653 | None:intergenic | 35.0% |
!!! | ACCTCTTTTGTTTTTGTCCA+TGG | - | chr6.3:11704174-11704193 | None:intergenic | 35.0% |
!!! | ACTTTTTTACACCGTTGGTA+TGG | + | chr6.3:11703107-11703126 | MS.gene018224:intron | 35.0% |
!!! | ATTTTAGAATCTCACCTGCT+AGG | - | chr6.3:11704007-11704026 | None:intergenic | 35.0% |
AAAAGTCGTCTTCGAAAGGT+TGG | + | chr6.3:11700627-11700646 | MS.gene018224:CDS | 40.0% | |
AAACTTGCGCATATCAATGG+CGG | + | chr6.3:11701511-11701530 | MS.gene018224:intron | 40.0% | |
AAGCGCTTTACTTCTGACTT+GGG | + | chr6.3:11704728-11704747 | MS.gene018224:intron | 40.0% | |
AAGGAAGCCAAAAATGCAGA+CGG | + | chr6.3:11705014-11705033 | MS.gene018224:CDS | 40.0% | |
AGGCTTCATGATAAACGTAC+AGG | - | chr6.3:11703869-11703888 | None:intergenic | 40.0% | |
AGGGAGGAAAATCAATTAGG+AGG | - | chr6.3:11703889-11703908 | None:intergenic | 40.0% | |
AGTCATTTCTTTGTGACCCT+TGG | - | chr6.3:11700894-11700913 | None:intergenic | 40.0% | |
ATGTTACAAGCAGCCATGTA+TGG | + | chr6.3:11704095-11704114 | MS.gene018224:CDS | 40.0% | |
ATTGCTGACAGAGAAAGACT+GGG | + | chr6.3:11700718-11700737 | MS.gene018224:CDS | 40.0% | |
CTATGGGACGATATTGTTGA+GGG | + | chr6.3:11700317-11700336 | MS.gene018224:CDS | 40.0% | |
CTTCGTTTCTTCGTCTTACT+GGG | + | chr6.3:11701740-11701759 | MS.gene018224:intron | 40.0% | |
GAATGGATGCTAAACAAAGG+AGG | + | chr6.3:11700797-11700816 | MS.gene018224:CDS | 40.0% | |
GACAAACTTGCGCATATCAA+TGG | + | chr6.3:11701508-11701527 | MS.gene018224:intron | 40.0% | |
GATTCTTACATCGCGTTATG+CGG | + | chr6.3:11705304-11705323 | MS.gene018224:CDS | 40.0% | |
GCACCAATTGGTATCAAGTT+GGG | + | chr6.3:11701465-11701484 | MS.gene018224:intron | 40.0% | |
GCAGCATATTCCAAAAGGAA+GGG | + | chr6.3:11704621-11704640 | MS.gene018224:intron | 40.0% | |
GCCATGGACAAAAACAAAAG+AGG | + | chr6.3:11704170-11704189 | MS.gene018224:CDS | 40.0% | |
GCTGTAAATATTGCATCCAC+TGG | + | chr6.3:11700215-11700234 | MS.gene018224:CDS | 40.0% | |
GGAGGAAACAATCAGGATAA+AGG | + | chr6.3:11705182-11705201 | MS.gene018224:CDS | 40.0% | |
GTCATTAAACAATGCCCTAG+GGG | + | chr6.3:11704599-11704618 | MS.gene018224:intron | 40.0% | |
TCTAAGTCAGGAATGGAAGA+TGG | - | chr6.3:11701324-11701343 | None:intergenic | 40.0% | |
TCTATGGGACGATATTGTTG+AGG | + | chr6.3:11700316-11700335 | MS.gene018224:CDS | 40.0% | |
TCTCAAAAGTCGTCTTCGAA+AGG | + | chr6.3:11700623-11700642 | MS.gene018224:CDS | 40.0% | |
TGACATCGAGATGTTTCATG+TGG | + | chr6.3:11700538-11700557 | MS.gene018224:CDS | 40.0% | |
TGTCAACTCAGCAAGAATAG+AGG | - | chr6.3:11701373-11701392 | None:intergenic | 40.0% | |
TTATCCTGATTGTTTCCTCC+TGG | - | chr6.3:11705182-11705201 | None:intergenic | 40.0% | |
TTGCCTTCAAGGTCTATGTA+GGG | - | chr6.3:11702347-11702366 | None:intergenic | 40.0% | |
TTTGCCTTCAAGGTCTATGT+AGG | - | chr6.3:11702348-11702367 | None:intergenic | 40.0% | |
! | ATTCCAGGTGTGTTTAGGAT+CGG | + | chr6.3:11702413-11702432 | MS.gene018224:intron | 40.0% |
! | CTTAAGACCGTCTGCATTTT+TGG | - | chr6.3:11705024-11705043 | None:intergenic | 40.0% |
! | GTGTCATTAAACAATGCCCT+AGG | + | chr6.3:11704597-11704616 | MS.gene018224:intron | 40.0% |
! | TTTTGTCCATGGCCCATAAA+AGG | - | chr6.3:11704163-11704182 | None:intergenic | 40.0% |
!!! | CGAGTTGGTGTTTTTGGTTA+AGG | - | chr6.3:11704779-11704798 | None:intergenic | 40.0% |
!!! | GTAGCACTTTTTTACACCGT+TGG | + | chr6.3:11703102-11703121 | MS.gene018224:intron | 40.0% |
AACCAAAAACACCAACTCGC+AGG | + | chr6.3:11704780-11704799 | MS.gene018224:intron | 45.0% | |
AAGTCAGGAATGGAAGATGG+AGG | - | chr6.3:11701321-11701340 | None:intergenic | 45.0% | |
ACAGCGGAACTCGACTTAAT+TGG | + | chr6.3:11702165-11702184 | MS.gene018224:CDS | 45.0% | |
ACCTGATCGGCAAAGATCTA+TGG | + | chr6.3:11700300-11700319 | MS.gene018224:CDS | 45.0% | |
AGGTTGCCAAAATCTCTTGC+GGG | + | chr6.3:11703746-11703765 | MS.gene018224:CDS | 45.0% | |
ATACCGATCCTAAACACACC+TGG | - | chr6.3:11702419-11702438 | None:intergenic | 45.0% | |
ATCCGCCAACATCAAAAGGT+AGG | - | chr6.3:11701562-11701581 | None:intergenic | 45.0% | |
ATGTCTTACTTGCAGCTGTG+TGG | + | chr6.3:11702315-11702334 | MS.gene018224:intron | 45.0% | |
CAAAAACATGTCCTGCGAGT+TGG | - | chr6.3:11704794-11704813 | None:intergenic | 45.0% | |
CAAGCGCTTTACTTCTGACT+TGG | + | chr6.3:11704727-11704746 | MS.gene018224:intron | 45.0% | |
CAATGTACGCGGCCTATATA+TGG | + | chr6.3:11702116-11702135 | MS.gene018224:CDS | 45.0% | |
CACTTGCTCTCATGCTAAAG+GGG | + | chr6.3:11705423-11705442 | MS.gene018224:CDS | 45.0% | |
CAGGTTGCCAAAATCTCTTG+CGG | + | chr6.3:11703745-11703764 | MS.gene018224:CDS | 45.0% | |
CATTGCTGACAGAGAAAGAC+TGG | + | chr6.3:11700717-11700736 | MS.gene018224:CDS | 45.0% | |
CATTGTGCCTATGATGTGCA+AGG | + | chr6.3:11704995-11705014 | MS.gene018224:CDS | 45.0% | |
CCACCCAACTTGATACCAAT+TGG | - | chr6.3:11701471-11701490 | None:intergenic | 45.0% | |
CCAGTAAGACGAAGAAACGA+AGG | - | chr6.3:11701742-11701761 | None:intergenic | 45.0% | |
CCTACTTTCGTCCATACCAA+CGG | - | chr6.3:11703121-11703140 | None:intergenic | 45.0% | |
CCTGATCGGCAAAGATCTAT+GGG | + | chr6.3:11700301-11700320 | MS.gene018224:CDS | 45.0% | |
CCTTCGTTTCTTCGTCTTAC+TGG | + | chr6.3:11701739-11701758 | MS.gene018224:intron | 45.0% | |
GAATCTCACCTGCTAGGTAA+TGG | - | chr6.3:11704001-11704020 | None:intergenic | 45.0% | |
GACCATGATATTGAGCAAGG+AGG | + | chr6.3:11700506-11700525 | MS.gene018224:CDS | 45.0% | |
GACCTCCTTGCTCAATATCA+TGG | - | chr6.3:11700511-11700530 | None:intergenic | 45.0% | |
GATTTAGCAGCAAGCGCAAA+AGG | - | chr6.3:11700755-11700774 | None:intergenic | 45.0% | |
GCACTTGCTCTCATGCTAAA+GGG | + | chr6.3:11705422-11705441 | MS.gene018224:CDS | 45.0% | |
GCAGACCATGATATTGAGCA+AGG | + | chr6.3:11700503-11700522 | MS.gene018224:CDS | 45.0% | |
GCTAATCCGCCAACATCAAA+AGG | - | chr6.3:11701566-11701585 | None:intergenic | 45.0% | |
GGAACTCGACTTAATTGGTG+TGG | + | chr6.3:11702170-11702189 | MS.gene018224:CDS | 45.0% | |
GGCACCAATTGGTATCAAGT+TGG | + | chr6.3:11701464-11701483 | MS.gene018224:intron | 45.0% | |
GGCAGCATATTCCAAAAGGA+AGG | + | chr6.3:11704620-11704639 | MS.gene018224:intron | 45.0% | |
GTGTAACAGCACAAGAAGCT+TGG | + | chr6.3:11700444-11700463 | MS.gene018224:intron | 45.0% | |
TACTCCATACAGGCAGTAGA+GGG | + | chr6.3:11704972-11704991 | MS.gene018224:intron | 45.0% | |
TAGGGGCAGCATATTCCAAA+AGG | + | chr6.3:11704616-11704635 | MS.gene018224:intron | 45.0% | |
TCCGCCAACATCAAAAGGTA+GGG | - | chr6.3:11701561-11701580 | None:intergenic | 45.0% | |
TGCACTTGCTCTCATGCTAA+AGG | + | chr6.3:11705421-11705440 | MS.gene018224:CDS | 45.0% | |
TGTTCCAGGAGGAAACAATC+AGG | + | chr6.3:11705175-11705194 | MS.gene018224:CDS | 45.0% | |
TTACTCCATACAGGCAGTAG+AGG | + | chr6.3:11704971-11704990 | MS.gene018224:intron | 45.0% | |
TTGCATCTGAAGAGCAGCAT+TGG | - | chr6.3:11704357-11704376 | None:intergenic | 45.0% | |
TTGGCTTCCTTGCACATCAT+AGG | - | chr6.3:11705005-11705024 | None:intergenic | 45.0% | |
! | ACCCTACCTTTTGATGTTGG+CGG | + | chr6.3:11701557-11701576 | MS.gene018224:intron | 45.0% |
! | AGTACTTCTAGCTGCAACCA+AGG | + | chr6.3:11700874-11700893 | MS.gene018224:CDS | 45.0% |
! | CAACTCGCAGGACATGTTTT+TGG | + | chr6.3:11704792-11704811 | MS.gene018224:intron | 45.0% |
! | GTACTTCTAGCTGCAACCAA+GGG | + | chr6.3:11700875-11700894 | MS.gene018224:CDS | 45.0% |
! | TGGCAGTGAAAAAAGGCATG+TGG | + | chr6.3:11700558-11700577 | MS.gene018224:CDS | 45.0% |
! | TTGGTTGCAGCTAGAAGTAC+TGG | - | chr6.3:11700875-11700894 | None:intergenic | 45.0% |
! | TTTGGAATATGCTGCCCCTA+GGG | - | chr6.3:11704616-11704635 | None:intergenic | 45.0% |
!! | CCAATTGGTATCAAGTTGGG+TGG | + | chr6.3:11701468-11701487 | MS.gene018224:intron | 45.0% |
!!! | TTTTGGAATATGCTGCCCCT+AGG | - | chr6.3:11704617-11704636 | None:intergenic | 45.0% |
!!! | TTTTTGGTTAAGGTGACGCC+TGG | - | chr6.3:11704769-11704788 | None:intergenic | 45.0% |
!! | ATATATGATAAATTAATTAA+TGG | - | chr6.3:11702884-11702903 | None:intergenic | 5.0% |
!!! | TATTATTATTTTTTTTTGAA+AGG | + | chr6.3:11703398-11703417 | MS.gene018224:intron | 5.0% |
AATGCCCTCTACTGCCTGTA+TGG | - | chr6.3:11704979-11704998 | None:intergenic | 50.0% | |
AGTAGTGTGCGTGAGATCTC+AGG | + | chr6.3:11701115-11701134 | MS.gene018224:intron | 50.0% | |
AGTTGGGTGGTCGAGATGTA+TGG | + | chr6.3:11701481-11701500 | MS.gene018224:intron | 50.0% | |
ATCCCTACCGCATTTCACAG+CGG | + | chr6.3:11702149-11702168 | MS.gene018224:CDS | 50.0% | |
CACGCTATTCAACTCTCGTG+TGG | + | chr6.3:11700392-11700411 | MS.gene018224:intron | 50.0% | |
CAGGAATGGAAGATGGAGGA+GGG | - | chr6.3:11701317-11701336 | None:intergenic | 50.0% | |
CCACCCTACATAGACCTTGA+AGG | + | chr6.3:11702341-11702360 | MS.gene018224:CDS | 50.0% | |
CCCATAGATCTTTGCCGATC+AGG | - | chr6.3:11700304-11700323 | None:intergenic | 50.0% | |
CCGTTGGTATGGACGAAAGT+AGG | + | chr6.3:11703118-11703137 | MS.gene018224:intron | 50.0% | |
CCTTCAAGGTCTATGTAGGG+TGG | - | chr6.3:11702344-11702363 | None:intergenic | 50.0% | |
CTACACCTCGCAGCTGAATT+AGG | + | chr6.3:11704305-11704324 | MS.gene018224:CDS | 50.0% | |
CTCAGCAAGAATAGAGGACG+AGG | - | chr6.3:11701367-11701386 | None:intergenic | 50.0% | |
CTGACAGAGAAAGACTGGGA+GGG | + | chr6.3:11700722-11700741 | MS.gene018224:CDS | 50.0% | |
GACGTCCACGATATGAGGAA+GGG | - | chr6.3:11704331-11704350 | None:intergenic | 50.0% | |
GATCTCACGCACACTACTCA+CGG | - | chr6.3:11701113-11701132 | None:intergenic | 50.0% | |
TCAGGAATGGAAGATGGAGG+AGG | - | chr6.3:11701318-11701337 | None:intergenic | 50.0% | |
TCCATGGCCCATAAAAGGTC+AGG | - | chr6.3:11704158-11704177 | None:intergenic | 50.0% | |
TCGAGTTCCGCTGTGAAATG+CGG | - | chr6.3:11702159-11702178 | None:intergenic | 50.0% | |
TCTTACATCGCGTTATGCGG+AGG | + | chr6.3:11705307-11705326 | MS.gene018224:CDS | 50.0% | |
TGAGAGCCAAGTCTCAATCC+TGG | + | chr6.3:11701279-11701298 | MS.gene018224:intron | 50.0% | |
TTAGGCCCTTCCTCATATCG+TGG | + | chr6.3:11704323-11704342 | MS.gene018224:CDS | 50.0% | |
TTCCGCTGTGAAATGCGGTA+GGG | - | chr6.3:11702154-11702173 | None:intergenic | 50.0% | |
TTCTGATCATGCCATGGCAG+TGG | + | chr6.3:11701443-11701462 | MS.gene018224:intron | 50.0% | |
! | AGAAGTAAAGCGCTTGTCGC+TGG | - | chr6.3:11704723-11704742 | None:intergenic | 50.0% |
! | CGGACCCTACCTTTTGATGT+TGG | + | chr6.3:11701554-11701573 | MS.gene018224:intron | 50.0% |
! | CTTCACGTTGCAGTTGATGC+AGG | + | chr6.3:11700656-11700675 | MS.gene018224:CDS | 50.0% |
! | TCCTGACCTTTTATGGGCCA+TGG | + | chr6.3:11704154-11704173 | MS.gene018224:CDS | 50.0% |
!! | TCATGCTAAAGGGGTACCGA+TGG | + | chr6.3:11705432-11705451 | MS.gene018224:CDS | 50.0% |
!!! | GTCCTGCGAGTTGGTGTTTT+TGG | - | chr6.3:11704785-11704804 | None:intergenic | 50.0% |
AAGGGCCTAATTCAGCTGCG+AGG | - | chr6.3:11704313-11704332 | None:intergenic | 55.0% | |
AGCAGGCCAGGATTGAGACT+TGG | - | chr6.3:11701288-11701307 | None:intergenic | 55.0% | |
CAAAAGGTAGGGTCCGCTTG+AGG | - | chr6.3:11701550-11701569 | None:intergenic | 55.0% | |
CGACGTCCACGATATGAGGA+AGG | - | chr6.3:11704332-11704351 | None:intergenic | 55.0% | |
CTTTCCTCAACCGCCTCAAG+CGG | + | chr6.3:11701534-11701553 | MS.gene018224:intron | 55.0% | |
GCAGCTTTCACTGTTCCAGG+AGG | + | chr6.3:11705164-11705183 | MS.gene018224:CDS | 55.0% | |
GCCAAAATCTCTTGCGGGTG+CGG | + | chr6.3:11703751-11703770 | MS.gene018224:CDS | 55.0% | |
GCTGACAGAGAAAGACTGGG+AGG | + | chr6.3:11700721-11700740 | MS.gene018224:CDS | 55.0% | |
GGATCGACGTCCACGATATG+AGG | - | chr6.3:11704336-11704355 | None:intergenic | 55.0% | |
GTTCCGCTGTGAAATGCGGT+AGG | - | chr6.3:11702155-11702174 | None:intergenic | 55.0% | |
! | ATGGAGGAGGGTGTAACAGC+AGG | - | chr6.3:11701305-11701324 | None:intergenic | 55.0% |
! | GCTCTTGCGCCTCTTTTCAG+AGG | + | chr6.3:11705511-11705530 | MS.gene018224:CDS | 55.0% |
!! | ACCAATTGGTGCCACTGCCA+TGG | - | chr6.3:11701457-11701476 | None:intergenic | 55.0% |
AAGGTAGGGTCCGCTTGAGG+CGG | - | chr6.3:11701547-11701566 | None:intergenic | 60.0% | |
GCCATGGCAGTGGCACCAAT+TGG | + | chr6.3:11701453-11701472 | MS.gene018224:intron | 60.0% | |
GCGGCAGCTTTCACTGTTCC+AGG | + | chr6.3:11705161-11705180 | MS.gene018224:CDS | 60.0% | |
TGACGCCTGGCACTGTGAAC+TGG | - | chr6.3:11704756-11704775 | None:intergenic | 60.0% | |
! | GCCGCACCCGCAAGAGATTT+TGG | - | chr6.3:11703755-11703774 | None:intergenic | 60.0% |
! | GGAGGGTGTAACAGCAGGCC+AGG | - | chr6.3:11701300-11701319 | None:intergenic | 65.0% |
GGGCGCCAGTTCACAGTGCC+AGG | + | chr6.3:11704748-11704767 | MS.gene018224:intron | 70.0% | |
GGGTCCGCTTGAGGCGGTTG+AGG | - | chr6.3:11701541-11701560 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 11700209 | 11705592 | 11700209 | ID=MS.gene018224 |
chr6.3 | mRNA | 11700209 | 11705592 | 11700209 | ID=MS.gene018224.t1;Parent=MS.gene018224 |
chr6.3 | exon | 11700209 | 11700338 | 11700209 | ID=MS.gene018224.t1.exon1;Parent=MS.gene018224.t1 |
chr6.3 | CDS | 11700209 | 11700338 | 11700209 | ID=cds.MS.gene018224.t1;Parent=MS.gene018224.t1 |
chr6.3 | exon | 11700453 | 11701013 | 11700453 | ID=MS.gene018224.t1.exon2;Parent=MS.gene018224.t1 |
chr6.3 | CDS | 11700453 | 11701013 | 11700453 | ID=cds.MS.gene018224.t1;Parent=MS.gene018224.t1 |
chr6.3 | exon | 11702054 | 11702209 | 11702054 | ID=MS.gene018224.t1.exon3;Parent=MS.gene018224.t1 |
chr6.3 | CDS | 11702054 | 11702209 | 11702054 | ID=cds.MS.gene018224.t1;Parent=MS.gene018224.t1 |
chr6.3 | exon | 11702330 | 11702419 | 11702330 | ID=MS.gene018224.t1.exon4;Parent=MS.gene018224.t1 |
chr6.3 | CDS | 11702330 | 11702419 | 11702330 | ID=cds.MS.gene018224.t1;Parent=MS.gene018224.t1 |
chr6.3 | exon | 11703735 | 11703872 | 11703735 | ID=MS.gene018224.t1.exon5;Parent=MS.gene018224.t1 |
chr6.3 | CDS | 11703735 | 11703872 | 11703735 | ID=cds.MS.gene018224.t1;Parent=MS.gene018224.t1 |
chr6.3 | exon | 11703967 | 11704397 | 11703967 | ID=MS.gene018224.t1.exon6;Parent=MS.gene018224.t1 |
chr6.3 | CDS | 11703967 | 11704397 | 11703967 | ID=cds.MS.gene018224.t1;Parent=MS.gene018224.t1 |
chr6.3 | exon | 11704984 | 11705592 | 11704984 | ID=MS.gene018224.t1.exon7;Parent=MS.gene018224.t1 |
chr6.3 | CDS | 11704984 | 11705592 | 11704984 | ID=cds.MS.gene018224.t1;Parent=MS.gene018224.t1 |
Gene Sequence |
Protein sequence |