Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019156.t1 | XP_013459616.1 | 96.3 | 241 | 9 | 0 | 1 | 241 | 1 | 241 | 5.50E-126 | 460.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019156.t1 | Q9SS37 | 56.7 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 5.3e-77 | 288.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019156.t1 | A0A072UVI7 | 96.3 | 241 | 9 | 0 | 1 | 241 | 1 | 241 | 4.0e-126 | 460.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34943 | MS.gene019156 | PPI |
| MS.gene028160 | MS.gene019156 | PPI |
| MS.gene08330 | MS.gene019156 | PPI |
| MS.gene023287 | MS.gene019156 | PPI |
| MS.gene028158 | MS.gene019156 | PPI |
| MS.gene019156 | MS.gene35007 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019156.t1 | MTR_3g449880 | 96.266 | 241 | 9 | 0 | 1 | 241 | 1 | 241 | 1.88e-171 | 472 |
| MS.gene019156.t1 | MTR_3g449880 | 95.082 | 183 | 9 | 0 | 59 | 241 | 37 | 219 | 1.68e-116 | 332 |
| MS.gene019156.t1 | MTR_5g090340 | 65.560 | 241 | 80 | 2 | 1 | 239 | 46 | 285 | 5.29e-106 | 308 |
| MS.gene019156.t1 | MTR_5g090340 | 65.560 | 241 | 80 | 2 | 1 | 239 | 49 | 288 | 5.85e-106 | 308 |
| MS.gene019156.t1 | MTR_8g099060 | 49.289 | 211 | 103 | 1 | 35 | 241 | 50 | 260 | 1.08e-69 | 214 |
| MS.gene019156.t1 | MTR_8g028450 | 47.196 | 214 | 101 | 1 | 34 | 235 | 53 | 266 | 1.32e-66 | 207 |
| MS.gene019156.t1 | MTR_1g099500 | 46.667 | 195 | 104 | 0 | 37 | 231 | 45 | 239 | 1.60e-59 | 188 |
| MS.gene019156.t1 | MTR_1g109630 | 34.975 | 203 | 122 | 3 | 43 | 241 | 10 | 206 | 1.78e-37 | 130 |
| MS.gene019156.t1 | MTR_3g062910 | 31.839 | 223 | 149 | 2 | 5 | 226 | 10 | 230 | 4.08e-33 | 120 |
| MS.gene019156.t1 | MTR_4g014700 | 35.294 | 187 | 121 | 0 | 41 | 227 | 5 | 191 | 1.05e-31 | 115 |
| MS.gene019156.t1 | MTR_1g107445 | 37.363 | 182 | 114 | 0 | 50 | 231 | 9 | 190 | 2.96e-26 | 101 |
| MS.gene019156.t1 | MTR_5g018250 | 31.073 | 177 | 122 | 0 | 55 | 231 | 29 | 205 | 5.41e-25 | 99.0 |
| MS.gene019156.t1 | MTR_6g012460 | 33.140 | 172 | 115 | 0 | 60 | 231 | 14 | 185 | 4.09e-23 | 93.2 |
| MS.gene019156.t1 | MTR_5g018080 | 33.333 | 141 | 94 | 0 | 59 | 199 | 15 | 155 | 1.04e-20 | 85.9 |
| MS.gene019156.t1 | MTR_5g018190 | 32.877 | 146 | 98 | 0 | 63 | 208 | 284 | 429 | 3.07e-20 | 89.0 |
| MS.gene019156.t1 | MTR_5g018110 | 33.099 | 142 | 95 | 0 | 62 | 203 | 344 | 485 | 1.71e-18 | 84.3 |
| MS.gene019156.t1 | MTR_5g090440 | 60.000 | 55 | 18 | 1 | 189 | 239 | 9 | 63 | 2.31e-15 | 68.9 |
| MS.gene019156.t1 | MTR_6g012460 | 35.115 | 131 | 85 | 0 | 60 | 190 | 14 | 144 | 5.13e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019156.t1 | AT3G10260 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 2.86e-103 | 300 |
| MS.gene019156.t1 | AT3G10260 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 2.86e-103 | 300 |
| MS.gene019156.t1 | AT3G10260 | 56.452 | 248 | 98 | 3 | 1 | 240 | 21 | 266 | 4.93e-103 | 300 |
| MS.gene019156.t1 | AT2G46170 | 48.756 | 201 | 103 | 0 | 31 | 231 | 40 | 240 | 8.56e-68 | 209 |
| MS.gene019156.t1 | AT1G64090 | 46.734 | 199 | 106 | 0 | 33 | 231 | 38 | 236 | 3.13e-65 | 203 |
| MS.gene019156.t1 | AT3G61560 | 46.766 | 201 | 107 | 0 | 31 | 231 | 40 | 240 | 7.42e-65 | 202 |
| MS.gene019156.t1 | AT3G61560 | 46.766 | 201 | 107 | 0 | 31 | 231 | 40 | 240 | 7.42e-65 | 202 |
| MS.gene019156.t1 | AT1G64090 | 43.256 | 215 | 106 | 1 | 33 | 231 | 38 | 252 | 3.88e-61 | 193 |
| MS.gene019156.t1 | AT4G11220 | 40.777 | 206 | 118 | 1 | 40 | 241 | 66 | 271 | 7.00e-60 | 190 |
| MS.gene019156.t1 | AT4G23630 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.13e-59 | 188 |
| MS.gene019156.t1 | AT4G23630 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.13e-59 | 188 |
| MS.gene019156.t1 | AT5G41600 | 44.560 | 193 | 107 | 0 | 40 | 232 | 49 | 241 | 5.28e-58 | 185 |
| MS.gene019156.t1 | AT3G61560 | 49.057 | 159 | 81 | 0 | 31 | 189 | 40 | 198 | 1.18e-51 | 167 |
| MS.gene019156.t1 | AT3G18260 | 38.049 | 205 | 123 | 1 | 39 | 239 | 19 | 223 | 6.50e-48 | 158 |
| MS.gene019156.t1 | AT4G01230 | 39.303 | 201 | 119 | 1 | 31 | 231 | 42 | 239 | 2.35e-47 | 157 |
| MS.gene019156.t1 | AT4G01230 | 38.308 | 201 | 119 | 2 | 31 | 231 | 42 | 237 | 5.38e-44 | 148 |
| MS.gene019156.t1 | AT2G46170 | 48.905 | 137 | 70 | 0 | 31 | 167 | 40 | 176 | 2.12e-43 | 145 |
| MS.gene019156.t1 | AT3G10915 | 29.954 | 217 | 148 | 1 | 15 | 231 | 1 | 213 | 7.16e-34 | 122 |
| MS.gene019156.t1 | AT3G10915 | 31.282 | 195 | 134 | 0 | 37 | 231 | 44 | 238 | 2.33e-33 | 121 |
| MS.gene019156.t1 | AT2G15280 | 32.258 | 186 | 126 | 0 | 47 | 232 | 2 | 187 | 3.30e-32 | 117 |
| MS.gene019156.t1 | AT3G10915 | 29.817 | 218 | 148 | 2 | 15 | 231 | 1 | 214 | 4.40e-32 | 117 |
| MS.gene019156.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 2.00e-29 | 109 |
| MS.gene019156.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 2.00e-29 | 109 |
| MS.gene019156.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 2.00e-29 | 109 |
| MS.gene019156.t1 | AT3G10915 | 27.083 | 240 | 148 | 3 | 15 | 231 | 1 | 236 | 9.83e-27 | 103 |
| MS.gene019156.t1 | AT1G68230 | 36.025 | 161 | 97 | 2 | 50 | 208 | 22 | 178 | 4.90e-26 | 101 |
| MS.gene019156.t1 | AT3G10915 | 28.090 | 178 | 128 | 0 | 54 | 231 | 4 | 181 | 1.09e-24 | 97.4 |
| MS.gene019156.t1 | AT3G10915 | 28.324 | 173 | 124 | 0 | 59 | 231 | 8 | 180 | 2.04e-24 | 96.7 |
| MS.gene019156.t1 | AT3G54120 | 31.250 | 192 | 132 | 0 | 36 | 227 | 1 | 192 | 3.93e-23 | 93.6 |
| MS.gene019156.t1 | AT3G19460 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 1.56e-22 | 92.4 |
| MS.gene019156.t1 | AT3G19460 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 1.56e-22 | 92.4 |
| MS.gene019156.t1 | AT3G19460 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 2.90e-19 | 83.6 |
| MS.gene019156.t1 | AT3G19460 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 2.90e-19 | 83.6 |
| MS.gene019156.t1 | AT1G68230 | 34.965 | 143 | 87 | 2 | 50 | 190 | 22 | 160 | 8.06e-19 | 80.9 |
| MS.gene019156.t1 | AT3G10915 | 28.571 | 154 | 106 | 1 | 15 | 168 | 1 | 150 | 3.29e-17 | 76.6 |
| MS.gene019156.t1 | AT2G23640 | 24.294 | 177 | 134 | 0 | 61 | 237 | 18 | 194 | 2.29e-14 | 70.1 |
| MS.gene019156.t1 | AT2G15280 | 27.586 | 116 | 84 | 0 | 47 | 162 | 2 | 117 | 5.83e-12 | 62.4 |
Find 41 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTGGTGCAACAATTATA+TGG | 0.199383 | 3.3:-36764781 | MS.gene019156:CDS |
| AACTTTGTGCTCAAGGTCTT+TGG | 0.269918 | 3.3:-36762422 | MS.gene019156:CDS |
| GCCTGCTTGCTCAATTTCTA+TGG | 0.286324 | 3.3:-36764697 | MS.gene019156:CDS |
| ATGTTCACAAATAACTCTTC+TGG | 0.294981 | 3.3:+36764500 | None:intergenic |
| CCGTGGGTTGAGGTTTCTTC+AGG | 0.314297 | 3.3:-36764450 | MS.gene019156:CDS |
| ATGCTTCTAGCATGTTTAAC+AGG | 0.343523 | 3.3:-36764670 | MS.gene019156:intron |
| GTGAACATTGCAACTGTAAT+CGG | 0.350430 | 3.3:-36764485 | MS.gene019156:CDS |
| CAACCTTGTCGACACATTAT+CGG | 0.356122 | 3.3:-36765080 | MS.gene019156:CDS |
| TCCAGGTTGTCGTAAGTTTG+TGG | 0.393138 | 3.3:-36763358 | MS.gene019156:intron |
| AACTGGTGCAACAATTATAT+GGG | 0.403050 | 3.3:-36764780 | MS.gene019156:CDS |
| CCAGGTTGTCGTAAGTTTGT+GGG | 0.407558 | 3.3:-36763357 | MS.gene019156:intron |
| TGTGGGCTGGTTCAGTGATC+GGG | 0.419844 | 3.3:-36763340 | MS.gene019156:CDS |
| TGATTTGTCTTCCTCAAAGA+AGG | 0.421270 | 3.3:+36765039 | None:intergenic |
| TGTTCACAAATAACTCTTCT+GGG | 0.437588 | 3.3:+36764501 | None:intergenic |
| TTGTGGGCTGGTTCAGTGAT+CGG | 0.439695 | 3.3:-36763341 | MS.gene019156:CDS |
| TTATATGGGTGCTATTTGAA+TGG | 0.444221 | 3.3:-36764766 | MS.gene019156:CDS |
| TCATACCTTTCATAGAGAAC+TGG | 0.464929 | 3.3:+36762458 | None:intergenic |
| CTTCAGGATGTTTCTTGTGA+AGG | 0.474877 | 3.3:-36764434 | MS.gene019156:CDS |
| AACTATAGAAAGCTGGATGC+TGG | 0.477192 | 3.3:-36762386 | MS.gene019156:CDS |
| TCCGAGATCAACAGACTGTT+CGG | 0.480198 | 3.3:-36765004 | MS.gene019156:CDS |
| CTGGTTCAGTGATCGGGAGT+TGG | 0.488082 | 3.3:-36763334 | MS.gene019156:CDS |
| ACAAAATAACTATAGAAAGC+TGG | 0.495354 | 3.3:-36762393 | MS.gene019156:CDS |
| TCCGAACAGTCTGTTGATCT+CGG | 0.515369 | 3.3:+36765003 | None:intergenic |
| GTTGTCGTAAGTTTGTGGGC+TGG | 0.521608 | 3.3:-36763353 | MS.gene019156:CDS |
| ACCATAGAAATTGAGCAAGC+AGG | 0.524128 | 3.3:+36764696 | None:intergenic |
| CACTTCCAGTTCTCTATGAA+AGG | 0.525840 | 3.3:-36762463 | MS.gene019156:CDS |
| TGCAACTGTAATCGGAAATG+AGG | 0.543462 | 3.3:-36764477 | MS.gene019156:CDS |
| AGTTGACAACTTTGTGCTCA+AGG | 0.544627 | 3.3:-36762429 | MS.gene019156:CDS |
| ATGAGGTTAACCGTGGGTTG+AGG | 0.554577 | 3.3:-36764460 | MS.gene019156:CDS |
| GAGCAAGCAGGCCAAGAACC+AGG | 0.554947 | 3.3:+36764708 | None:intergenic |
| AGTTCTCTATGAAAGGTATG+AGG | 0.559341 | 3.3:-36762456 | MS.gene019156:CDS |
| TGTCGACAAGGTTGTGAAGG+AGG | 0.569674 | 3.3:+36765089 | None:intergenic |
| CCTCCTAAAAGATGGTGCAC+AGG | 0.570522 | 3.3:+36764971 | None:intergenic |
| CTGGATGCTGGTGTGCTCAA+AGG | 0.572299 | 3.3:-36762374 | MS.gene019156:CDS |
| ATGTGTCGACAAGGTTGTGA+AGG | 0.609913 | 3.3:+36765086 | None:intergenic |
| GCAACACGAGGTACTTGAGA+TGG | 0.628239 | 3.3:+36764527 | None:intergenic |
| ATCGGAAATGAGGTTAACCG+TGG | 0.634795 | 3.3:-36764467 | MS.gene019156:CDS |
| CCTGAAGAAACCTCAACCCA+CGG | 0.663353 | 3.3:+36764450 | None:intergenic |
| TCGGAAATGAGGTTAACCGT+GGG | 0.683014 | 3.3:-36764466 | MS.gene019156:CDS |
| TGTCCGATAATGTGTCGACA+AGG | 0.693508 | 3.3:+36765077 | None:intergenic |
| TCTTCTGGGACAGCAACACG+AGG | 0.706178 | 3.3:+36764515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTACATTGAATTAAATT+GGG | + | chr3.3:36762538-36762557 | None:intergenic | 15.0% |
| !! | TTCTAAATCACATTTATAAT+TGG | - | chr3.3:36763711-36763730 | MS.gene019156:intron | 15.0% |
| !!! | TTCTTTTATGCTTTAAAATA+AGG | + | chr3.3:36763500-36763519 | None:intergenic | 15.0% |
| !!! | TTTCAGTTTTAATTACAAAA+TGG | + | chr3.3:36764642-36764661 | None:intergenic | 15.0% |
| !! | AGCTGAATACATAAAAATAT+GGG | + | chr3.3:36764699-36764718 | None:intergenic | 20.0% |
| !! | AGTATAAAAAATCTTTACAC+CGG | + | chr3.3:36763636-36763655 | None:intergenic | 20.0% |
| !! | CATCTTACATTGAATTAAAT+TGG | + | chr3.3:36762539-36762558 | None:intergenic | 20.0% |
| !! | TAGCTGAATACATAAAAATA+TGG | + | chr3.3:36764700-36764719 | None:intergenic | 20.0% |
| !! | TTCAACATTCTATTTGTATT+GGG | + | chr3.3:36763750-36763769 | None:intergenic | 20.0% |
| !! | TTCTTAAAAAGACATGATTT+CGG | - | chr3.3:36764297-36764316 | MS.gene019156:intron | 20.0% |
| !! | TTTCAACATTCTATTTGTAT+TGG | + | chr3.3:36763751-36763770 | None:intergenic | 20.0% |
| !!! | ATTTAATTTATATACATCGC+CGG | - | chr3.3:36763614-36763633 | MS.gene019156:intron | 20.0% |
| !!! | TTCTCTTGTTTTAATTTATG+TGG | - | chr3.3:36762843-36762862 | MS.gene019156:intron | 20.0% |
| ! | AATTGATTAAAAAGCAAGCA+CGG | + | chr3.3:36763169-36763188 | None:intergenic | 25.0% |
| ! | ACAAAATAACTATAGAAAGC+TGG | - | chr3.3:36765068-36765087 | MS.gene019156:CDS | 25.0% |
| ! | ACATGTTATTGATATTGTCA+TGG | - | chr3.3:36763231-36763250 | MS.gene019156:intron | 25.0% |
| ! | ATTACATGTGCAAATATTTG+GGG | + | chr3.3:36764246-36764265 | None:intergenic | 25.0% |
| ! | CTGCAAGTTTGAAAAATATA+GGG | - | chr3.3:36764542-36764561 | MS.gene019156:intron | 25.0% |
| ! | GATTACATGTGCAAATATTT+GGG | + | chr3.3:36764247-36764266 | None:intergenic | 25.0% |
| ! | GTATAACATGAATAATCATC+CGG | + | chr3.3:36764929-36764948 | None:intergenic | 25.0% |
| ! | GTTGAAAACTTCAAAAGAAA+AGG | + | chr3.3:36763192-36763211 | None:intergenic | 25.0% |
| ! | TAAAATAAGGAAAAGTGACA+AGG | + | chr3.3:36763487-36763506 | None:intergenic | 25.0% |
| ! | TAAAGCATAAAAGAAGTTGT+AGG | - | chr3.3:36763505-36763524 | MS.gene019156:intron | 25.0% |
| ! | TCTAAATTATGAACAAATGC+TGG | - | chr3.3:36764864-36764883 | MS.gene019156:intron | 25.0% |
| ! | TCTGCAAGTTTGAAAAATAT+AGG | - | chr3.3:36764541-36764560 | MS.gene019156:intron | 25.0% |
| ! | TGATTACATGTGCAAATATT+TGG | + | chr3.3:36764248-36764267 | None:intergenic | 25.0% |
| !! | GAAACAAATATTTTGTCGAA+AGG | - | chr3.3:36764958-36764977 | MS.gene019156:intron | 25.0% |
| !! | TATAACTCAACATGTTTTCA+GGG | + | chr3.3:36764724-36764743 | None:intergenic | 25.0% |
| !!! | ACTTTGTTTTTCTTCAAATG+TGG | - | chr3.3:36764344-36764363 | MS.gene019156:intron | 25.0% |
| !!! | ATGTCTTTTTAAGAAATGTG+GGG | + | chr3.3:36764292-36764311 | None:intergenic | 25.0% |
| !!! | ATTTCTGCTAGTTTTTTAAC+TGG | - | chr3.3:36762664-36762683 | MS.gene019156:intron | 25.0% |
| !!! | CATGTCTTTTTAAGAAATGT+GGG | + | chr3.3:36764293-36764312 | None:intergenic | 25.0% |
| !!! | TCAAAGAAGGATGATTTTTT+GGG | + | chr3.3:36762412-36762431 | None:intergenic | 25.0% |
| !!! | TCATGTCTTTTTAAGAAATG+TGG | + | chr3.3:36764294-36764313 | None:intergenic | 25.0% |
| !!! | TTTTTGACTGTCATCTATAT+TGG | - | chr3.3:36764156-36764175 | MS.gene019156:intron | 25.0% |
| AAATCCCTTAGTAAATAACC+TGG | + | chr3.3:36763598-36763617 | None:intergenic | 30.0% | |
| AACTGGTGCAACAATTATAT+GGG | - | chr3.3:36762681-36762700 | MS.gene019156:intron | 30.0% | |
| ACAATGCACATGTTTGATTA+AGG | + | chr3.3:36763143-36763162 | None:intergenic | 30.0% | |
| ATATTGAAAGATGGGATAGT+TGG | + | chr3.3:36763464-36763483 | None:intergenic | 30.0% | |
| ATCATAACATCATACTGCAT+AGG | - | chr3.3:36763344-36763363 | MS.gene019156:CDS | 30.0% | |
| ATGTTCACAAATAACTCTTC+TGG | + | chr3.3:36762964-36762983 | None:intergenic | 30.0% | |
| ATTTGCACATGTAATCAAGA+GGG | - | chr3.3:36764251-36764270 | MS.gene019156:intron | 30.0% | |
| CAAAAAATCATCCTTCTTTG+AGG | - | chr3.3:36762411-36762430 | MS.gene019156:CDS | 30.0% | |
| CTACCATATCAACTAAGAAA+AGG | + | chr3.3:36763272-36763291 | None:intergenic | 30.0% | |
| CTGAAAACATGTTGAGTTAT+AGG | - | chr3.3:36764723-36764742 | MS.gene019156:CDS | 30.0% | |
| GCTAATAAATTGACACTTTG+CGG | + | chr3.3:36764038-36764057 | None:intergenic | 30.0% | |
| TAACTGGTGCAACAATTATA+TGG | - | chr3.3:36762680-36762699 | MS.gene019156:intron | 30.0% | |
| TATTGAAAGATGGGATAGTT+GGG | + | chr3.3:36763463-36763482 | None:intergenic | 30.0% | |
| TATTTGCACATGTAATCAAG+AGG | - | chr3.3:36764250-36764269 | MS.gene019156:intron | 30.0% | |
| TCAAAAGATGAAAAGAAAGC+TGG | + | chr3.3:36764187-36764206 | None:intergenic | 30.0% | |
| TGACAAGGATATTGAAAGAT+GGG | + | chr3.3:36763472-36763491 | None:intergenic | 30.0% | |
| TGCTATAATATCAAGTGTCA+AGG | - | chr3.3:36763930-36763949 | MS.gene019156:intron | 30.0% | |
| TGTTCACAAATAACTCTTCT+GGG | + | chr3.3:36762963-36762982 | None:intergenic | 30.0% | |
| TGTTTGATTAAGGTTAACTC+TGG | + | chr3.3:36763133-36763152 | None:intergenic | 30.0% | |
| ! | ATGTCACTTAATTCTTCATG+TGG | - | chr3.3:36763774-36763793 | MS.gene019156:intron | 30.0% |
| ! | CTATAACTCAACATGTTTTC+AGG | + | chr3.3:36764725-36764744 | None:intergenic | 30.0% |
| ! | GCTTTCTTTTCATCTTTTGA+TGG | - | chr3.3:36764187-36764206 | MS.gene019156:intron | 30.0% |
| ! | TCAATTTGCTTCCTGTTAAA+AGG | + | chr3.3:36764608-36764627 | None:intergenic | 30.0% |
| ! | TTTTCTGCTGTGATTTTATC+AGG | + | chr3.3:36762352-36762371 | None:intergenic | 30.0% |
| !! | CTTTTCTTAGTTGATATGGT+AGG | - | chr3.3:36763270-36763289 | MS.gene019156:intron | 30.0% |
| !! | TATTTTTCAAACTTGCAGAC+CGG | + | chr3.3:36764540-36764559 | None:intergenic | 30.0% |
| !! | TGACCTTTTCTTAGTTGATA+TGG | - | chr3.3:36763266-36763285 | MS.gene019156:intron | 30.0% |
| !! | TGTCTTTTTAAGAAATGTGG+GGG | + | chr3.3:36764291-36764310 | None:intergenic | 30.0% |
| !! | TTATATGGGTGCTATTTGAA+TGG | - | chr3.3:36762695-36762714 | MS.gene019156:intron | 30.0% |
| !!! | CTCAAAGAAGGATGATTTTT+TGG | + | chr3.3:36762413-36762432 | None:intergenic | 30.0% |
| AAAAACTGGCATAAGAAAGC+TGG | + | chr3.3:36764568-36764587 | None:intergenic | 35.0% | |
| ATATGGGTCTCTTTACTTTG+AGG | + | chr3.3:36764683-36764702 | None:intergenic | 35.0% | |
| ATGCTTCTAGCATGTTTAAC+AGG | - | chr3.3:36762791-36762810 | MS.gene019156:intron | 35.0% | |
| CAGGAAACAGATTGAAAAAC+TGG | + | chr3.3:36764582-36764601 | None:intergenic | 35.0% | |
| CAGGAAGCAAATTGAAAACA+AGG | - | chr3.3:36764613-36764632 | MS.gene019156:intron | 35.0% | |
| CATAAAAGAAGTTGTAGGCA+TGG | - | chr3.3:36763510-36763529 | MS.gene019156:intron | 35.0% | |
| CATATGACAGTGACATAATG+AGG | + | chr3.3:36763999-36764018 | None:intergenic | 35.0% | |
| CATGAATAATCATCCGGAAA+AGG | + | chr3.3:36764923-36764942 | None:intergenic | 35.0% | |
| GGTTAACTCTGGATGATAAA+TGG | + | chr3.3:36763122-36763141 | None:intergenic | 35.0% | |
| GTGAACATTGCAACTGTAAT+CGG | - | chr3.3:36762976-36762995 | MS.gene019156:intron | 35.0% | |
| GTGACAAGGATATTGAAAGA+TGG | + | chr3.3:36763473-36763492 | None:intergenic | 35.0% | |
| TCATACCTTTCATAGAGAAC+TGG | + | chr3.3:36765006-36765025 | None:intergenic | 35.0% | |
| TCGTCCAGGTTATTTACTAA+GGG | - | chr3.3:36763591-36763610 | MS.gene019156:intron | 35.0% | |
| TTCGTCCAGGTTATTTACTA+AGG | - | chr3.3:36763590-36763609 | MS.gene019156:intron | 35.0% | |
| TTTAGGAGGTGGAAAATGTA+CGG | - | chr3.3:36762504-36762523 | MS.gene019156:intron | 35.0% | |
| ! | AGTTCTCTATGAAAGGTATG+AGG | - | chr3.3:36765005-36765024 | MS.gene019156:CDS | 35.0% |
| ! | ATTTTCCACCTCCTAAAAGA+TGG | + | chr3.3:36762501-36762520 | None:intergenic | 35.0% |
| ! | GTTTCCTGTTTCCTTTTAAC+AGG | - | chr3.3:36764594-36764613 | MS.gene019156:intron | 35.0% |
| ! | TGATTTGTCTTCCTCAAAGA+AGG | + | chr3.3:36762425-36762444 | None:intergenic | 35.0% |
| ! | TTCTCTACTATGTTTTGTCC+TGG | - | chr3.3:36762735-36762754 | MS.gene019156:intron | 35.0% |
| !! | TATGGCTCTAGTTCATGAAA+TGG | - | chr3.3:36764443-36764462 | MS.gene019156:CDS | 35.0% |
| !! | TCTGAAGTACTTTTGCAAGT+GGG | - | chr3.3:36764370-36764389 | MS.gene019156:intron | 35.0% |
| !! | TTTTTAAGAAATGTGGGGGT+GGG | + | chr3.3:36764287-36764306 | None:intergenic | 35.0% |
| !!! | CAGTGTTGTTTTTCCTTTTC+CGG | - | chr3.3:36764907-36764926 | MS.gene019156:intron | 35.0% |
| !!! | TTCTGAAGTACTTTTGCAAG+TGG | - | chr3.3:36764369-36764388 | MS.gene019156:intron | 35.0% |
| AACTATAGAAAGCTGGATGC+TGG | - | chr3.3:36765075-36765094 | MS.gene019156:CDS | 40.0% | |
| AACTTTGTGCTCAAGGTCTT+TGG | - | chr3.3:36765039-36765058 | MS.gene019156:CDS | 40.0% | |
| AAGATGGGATAGTTGGGTTT+CGG | + | chr3.3:36763457-36763476 | None:intergenic | 40.0% | |
| ACCATAGAAATTGAGCAAGC+AGG | + | chr3.3:36762768-36762787 | None:intergenic | 40.0% | |
| AGTTGACAACTTTGTGCTCA+AGG | - | chr3.3:36765032-36765051 | MS.gene019156:CDS | 40.0% | |
| ATACTGCTAGTGCTAGGTAT+GGG | + | chr3.3:36764424-36764443 | None:intergenic | 40.0% | |
| ATGAGGTCTGCTAATACACT+AGG | - | chr3.3:36763904-36763923 | MS.gene019156:intron | 40.0% | |
| ATGGGGAAGCAACCTTAATA+GGG | + | chr3.3:36764406-36764425 | None:intergenic | 40.0% | |
| CAACCTTGTCGACACATTAT+CGG | - | chr3.3:36762381-36762400 | MS.gene019156:CDS | 40.0% | |
| CACTTCCAGTTCTCTATGAA+AGG | - | chr3.3:36764998-36765017 | MS.gene019156:CDS | 40.0% | |
| CCTATTCACAAAAACACGCT+CGG | - | chr3.3:36764796-36764815 | MS.gene019156:CDS | 40.0% | |
| CTTACCTAGAGCCCTAAAAA+GGG | - | chr3.3:36764503-36764522 | MS.gene019156:CDS | 40.0% | |
| CTTCAGGATGTTTCTTGTGA+AGG | - | chr3.3:36763027-36763046 | MS.gene019156:intron | 40.0% | |
| GCTTCCTGTTAAAAGGAAAC+AGG | + | chr3.3:36764601-36764620 | None:intergenic | 40.0% | |
| GGAAGATTTCCTCCCTATTA+AGG | - | chr3.3:36764391-36764410 | MS.gene019156:intron | 40.0% | |
| GGATGTCAGCAGAATCAATA+TGG | + | chr3.3:36763376-36763395 | None:intergenic | 40.0% | |
| GTAGGCATGGTGTATGTAAA+TGG | - | chr3.3:36763523-36763542 | MS.gene019156:intron | 40.0% | |
| TACCTAGCACTAGCAGTATA+TGG | - | chr3.3:36764425-36764444 | MS.gene019156:CDS | 40.0% | |
| TATACTGCTAGTGCTAGGTA+TGG | + | chr3.3:36764425-36764444 | None:intergenic | 40.0% | |
| TATGGGGAAGCAACCTTAAT+AGG | + | chr3.3:36764407-36764426 | None:intergenic | 40.0% | |
| TCGCAAAGATGATTCTGTGA+TGG | + | chr3.3:36763397-36763416 | None:intergenic | 40.0% | |
| TCTATGCCTCCACATAAGTT+GGG | + | chr3.3:36763854-36763873 | None:intergenic | 40.0% | |
| TGAAAGTTGAAACACTCTCC+AGG | - | chr3.3:36764086-36764105 | MS.gene019156:intron | 40.0% | |
| TGATTAAAAAGCAAGCACGG+AGG | + | chr3.3:36763166-36763185 | None:intergenic | 40.0% | |
| TGCAACTGTAATCGGAAATG+AGG | - | chr3.3:36762984-36763003 | MS.gene019156:intron | 40.0% | |
| ! | AAACCTGTGCACCATCTTTT+AGG | - | chr3.3:36762487-36762506 | MS.gene019156:intron | 40.0% |
| ! | CTTCATGTGGTTGACTTTGT+CGG | - | chr3.3:36763787-36763806 | MS.gene019156:intron | 40.0% |
| ! | CTTGAATAAAGTGTTCGTCC+AGG | - | chr3.3:36763577-36763596 | MS.gene019156:intron | 40.0% |
| ! | TTCGGAAGTACACATCTAGA+TGG | - | chr3.3:36764315-36764334 | MS.gene019156:intron | 40.0% |
| !! | CTATGTTTTGTCCTGGTTCT+TGG | - | chr3.3:36762742-36762761 | MS.gene019156:intron | 40.0% |
| !! | CTTTTTAAGAAATGTGGGGG+TGG | + | chr3.3:36764288-36764307 | None:intergenic | 40.0% |
| !! | GGCTTTAAATGCTATAGCTG+CGG | - | chr3.3:36762615-36762634 | MS.gene019156:intron | 40.0% |
| AGCCATATACTGCTAGTGCT+AGG | + | chr3.3:36764430-36764449 | None:intergenic | 45.0% | |
| ATATACGACCACAACCCTCA+GGG | + | chr3.3:36764476-36764495 | None:intergenic | 45.0% | |
| ATCGGAAATGAGGTTAACCG+TGG | - | chr3.3:36762994-36763013 | MS.gene019156:intron | 45.0% | |
| CCAGGTTGTCGTAAGTTTGT+GGG | - | chr3.3:36764104-36764123 | MS.gene019156:intron | 45.0% | |
| CTCTATGCCTCCACATAAGT+TGG | + | chr3.3:36763855-36763874 | None:intergenic | 45.0% | |
| GCCTGCTTGCTCAATTTCTA+TGG | - | chr3.3:36762764-36762783 | MS.gene019156:intron | 45.0% | |
| GCTTACCTAGAGCCCTAAAA+AGG | - | chr3.3:36764502-36764521 | MS.gene019156:CDS | 45.0% | |
| TACTGCTAGTGCTAGGTATG+GGG | + | chr3.3:36764423-36764442 | None:intergenic | 45.0% | |
| TATATACGACCACAACCCTC+AGG | + | chr3.3:36764477-36764496 | None:intergenic | 45.0% | |
| TCCAGGTTGTCGTAAGTTTG+TGG | - | chr3.3:36764103-36764122 | MS.gene019156:intron | 45.0% | |
| TCCGAACAGTCTGTTGATCT+CGG | + | chr3.3:36762461-36762480 | None:intergenic | 45.0% | |
| TCCGAGATCAACAGACTGTT+CGG | - | chr3.3:36762457-36762476 | MS.gene019156:CDS | 45.0% | |
| TCGGAAATGAGGTTAACCGT+GGG | - | chr3.3:36762995-36763014 | MS.gene019156:intron | 45.0% | |
| TGTTGACCTCTGTTCAGATG+AGG | - | chr3.3:36763887-36763906 | MS.gene019156:intron | 45.0% | |
| ! | ATGTGTCGACAAGGTTGTGA+AGG | + | chr3.3:36762378-36762397 | None:intergenic | 45.0% |
| ! | TAGCTGCGGATGTTTTGCTA+TGG | - | chr3.3:36762629-36762648 | MS.gene019156:intron | 45.0% |
| ! | TGTCCGATAATGTGTCGACA+AGG | + | chr3.3:36762387-36762406 | None:intergenic | 45.0% |
| !! | CCGAGCGTGTTTTTGTGAAT+AGG | + | chr3.3:36764799-36764818 | None:intergenic | 45.0% |
| !!! | AATAAATTTTTTTAATGATT+TGG | + | chr3.3:36763677-36763696 | None:intergenic | 5.0% |
| !!! | TTTCTTTTTATTTTATTTTT+TGG | - | chr3.3:36762594-36762613 | MS.gene019156:intron | 5.0% |
| AGAGGTCAACACACCAGAGT+TGG | + | chr3.3:36763878-36763897 | None:intergenic | 50.0% | |
| AGCAGACCTCATCTGAACAG+AGG | + | chr3.3:36763896-36763915 | None:intergenic | 50.0% | |
| CCCACAAACTTACGACAACC+TGG | + | chr3.3:36764107-36764126 | None:intergenic | 50.0% | |
| CCTCCTAAAAGATGGTGCAC+AGG | + | chr3.3:36762493-36762512 | None:intergenic | 50.0% | |
| CCTGAAGAAACCTCAACCCA+CGG | + | chr3.3:36763014-36763033 | None:intergenic | 50.0% | |
| GGGAAGCAACCTTAATAGGG+AGG | + | chr3.3:36764403-36764422 | None:intergenic | 50.0% | |
| GTTGTCGTAAGTTTGTGGGC+TGG | - | chr3.3:36764108-36764127 | MS.gene019156:intron | 50.0% | |
| TATACGACCACAACCCTCAG+GGG | + | chr3.3:36764475-36764494 | None:intergenic | 50.0% | |
| TGTCGACAAGGTTGTGAAGG+AGG | + | chr3.3:36762375-36762394 | None:intergenic | 50.0% | |
| ! | ATGAGGTTAACCGTGGGTTG+AGG | - | chr3.3:36763001-36763020 | MS.gene019156:intron | 50.0% |
| ! | CCTGTGCACCATCTTTTAGG+AGG | - | chr3.3:36762490-36762509 | MS.gene019156:intron | 50.0% |
| ! | GCAACACGAGGTACTTGAGA+TGG | + | chr3.3:36762937-36762956 | None:intergenic | 50.0% |
| ! | TGCTCGTGGCTCCCTTTTTA+GGG | + | chr3.3:36764517-36764536 | None:intergenic | 50.0% |
| !! | CTGCGGATGTTTTGCTATGG+AGG | - | chr3.3:36762632-36762651 | MS.gene019156:intron | 50.0% |
| !! | GTGCACCATCTTTTAGGAGG+TGG | - | chr3.3:36762493-36762512 | MS.gene019156:intron | 50.0% |
| !! | TTGTGGGCTGGTTCAGTGAT+CGG | - | chr3.3:36764120-36764139 | MS.gene019156:intron | 50.0% |
| AAAAAGGGAGCCACGAGCAC+CGG | - | chr3.3:36764518-36764537 | MS.gene019156:CDS | 55.0% | |
| ACTAAATCCCACGAGCCAGC+TGG | - | chr3.3:36763823-36763842 | MS.gene019156:intron | 55.0% | |
| ATACGACCACAACCCTCAGG+GGG | + | chr3.3:36764474-36764493 | None:intergenic | 55.0% | |
| CTAAATCCCACGAGCCAGCT+GGG | - | chr3.3:36763824-36763843 | MS.gene019156:intron | 55.0% | |
| CTGGATGCTGGTGTGCTCAA+AGG | - | chr3.3:36765087-36765106 | MS.gene019156:CDS | 55.0% | |
| CTGGTTCAGTGATCGGGAGT+TGG | - | chr3.3:36764127-36764146 | MS.gene019156:intron | 55.0% | |
| GAAATGGCCTTTCCCCCTGA+GGG | - | chr3.3:36764459-36764478 | MS.gene019156:CDS | 55.0% | |
| TGAAATGGCCTTTCCCCCTG+AGG | - | chr3.3:36764458-36764477 | MS.gene019156:CDS | 55.0% | |
| ! | CCGTGGGTTGAGGTTTCTTC+AGG | - | chr3.3:36763011-36763030 | MS.gene019156:intron | 55.0% |
| ! | GTGCTCGTGGCTCCCTTTTT+AGG | + | chr3.3:36764518-36764537 | None:intergenic | 55.0% |
| ! | TGGAGGCATAGAGCCAACTC+TGG | - | chr3.3:36763862-36763881 | MS.gene019156:intron | 55.0% |
| !! | TCTTCTGGGACAGCAACACG+AGG | + | chr3.3:36762949-36762968 | None:intergenic | 55.0% |
| !! | TGTGGGCTGGTTCAGTGATC+GGG | - | chr3.3:36764121-36764140 | MS.gene019156:intron | 55.0% |
| !!! | GGCTCCCTTTTTAGGGCTCT+AGG | + | chr3.3:36764510-36764529 | None:intergenic | 55.0% |
| AACTTGCAGACCGGTGCTCG+TGG | + | chr3.3:36764531-36764550 | None:intergenic | 60.0% | |
| ACCACAACCCTCAGGGGGAA+AGG | + | chr3.3:36764469-36764488 | None:intergenic | 60.0% | |
| GAGCAAGCAGGCCAAGAACC+AGG | + | chr3.3:36762756-36762775 | None:intergenic | 60.0% | |
| ! | ATAAGTTGGGCCAGCCCAGC+TGG | + | chr3.3:36763841-36763860 | None:intergenic | 60.0% |
| ! | GGCTGGCCCAACTTATGTGG+AGG | - | chr3.3:36763845-36763864 | MS.gene019156:intron | 60.0% |
| !! | CTGGGCTGGCCCAACTTATG+TGG | - | chr3.3:36763842-36763861 | MS.gene019156:intron | 60.0% |
| GCCTTTCCCCCTGAGGGTTG+TGG | - | chr3.3:36764465-36764484 | MS.gene019156:CDS | 65.0% | |
| ATCCCACGAGCCAGCTGGGC+TGG | - | chr3.3:36763828-36763847 | MS.gene019156:intron | 70.0% | |
| !! | GGCCAGCCCAGCTGGCTCGT+GGG | + | chr3.3:36763833-36763852 | None:intergenic | 75.0% |
| !!! | GGGCCAGCCCAGCTGGCTCG+TGG | + | chr3.3:36763834-36763853 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 36762346 | 36765137 | 36762346 | ID=MS.gene019156 |
| chr3.3 | mRNA | 36762346 | 36765137 | 36762346 | ID=MS.gene019156.t1;Parent=MS.gene019156 |
| chr3.3 | exon | 36764963 | 36765137 | 36764963 | ID=MS.gene019156.t1.exon1;Parent=MS.gene019156.t1 |
| chr3.3 | CDS | 36764963 | 36765137 | 36764963 | ID=cds.MS.gene019156.t1;Parent=MS.gene019156.t1 |
| chr3.3 | exon | 36764671 | 36764851 | 36764671 | ID=MS.gene019156.t1.exon2;Parent=MS.gene019156.t1 |
| chr3.3 | CDS | 36764671 | 36764851 | 36764671 | ID=cds.MS.gene019156.t1;Parent=MS.gene019156.t1 |
| chr3.3 | exon | 36764412 | 36764553 | 36764412 | ID=MS.gene019156.t1.exon3;Parent=MS.gene019156.t1 |
| chr3.3 | CDS | 36764412 | 36764553 | 36764412 | ID=cds.MS.gene019156.t1;Parent=MS.gene019156.t1 |
| chr3.3 | exon | 36763306 | 36763375 | 36763306 | ID=MS.gene019156.t1.exon4;Parent=MS.gene019156.t1 |
| chr3.3 | CDS | 36763306 | 36763375 | 36763306 | ID=cds.MS.gene019156.t1;Parent=MS.gene019156.t1 |
| chr3.3 | exon | 36762346 | 36762503 | 36762346 | ID=MS.gene019156.t1.exon5;Parent=MS.gene019156.t1 |
| chr3.3 | CDS | 36762346 | 36762503 | 36762346 | ID=cds.MS.gene019156.t1;Parent=MS.gene019156.t1 |
| Gene Sequence |
| Protein sequence |
