Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019248.t1 | KEH33585.1 | 90.7 | 396 | 37 | 0 | 1 | 396 | 116 | 511 | 4.60E-210 | 740.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019248.t1 | Q9SHJ5 | 57.4 | 408 | 163 | 6 | 1 | 397 | 178 | 585 | 3.5e-126 | 453.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019248.t1 | A0A072V5Y0 | 90.7 | 396 | 37 | 0 | 1 | 396 | 116 | 511 | 3.3e-210 | 740.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07326 | MS.gene019248 | PPI |
| MS.gene019248 | MS.gene20875 | PPI |
| MS.gene005496 | MS.gene019248 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019248.t1 | MTR_3g448430 | 90.657 | 396 | 37 | 0 | 1 | 396 | 116 | 511 | 0.0 | 748 |
| MS.gene019248.t1 | MTR_5g091660 | 70.574 | 401 | 113 | 3 | 1 | 398 | 133 | 531 | 0.0 | 580 |
| MS.gene019248.t1 | MTR_3g048330 | 82.671 | 277 | 46 | 1 | 126 | 400 | 1 | 277 | 2.58e-170 | 477 |
| MS.gene019248.t1 | MTR_7g067380 | 49.383 | 405 | 195 | 6 | 1 | 400 | 96 | 495 | 2.64e-127 | 376 |
| MS.gene019248.t1 | MTR_4g415290 | 47.901 | 405 | 202 | 5 | 1 | 400 | 93 | 493 | 2.85e-127 | 376 |
| MS.gene019248.t1 | MTR_1g086650 | 50.123 | 405 | 189 | 8 | 4 | 400 | 134 | 533 | 4.80e-127 | 377 |
| MS.gene019248.t1 | MTR_5g061520 | 47.512 | 402 | 203 | 4 | 4 | 400 | 87 | 485 | 3.20e-126 | 373 |
| MS.gene019248.t1 | MTR_1g040500 | 47.407 | 405 | 205 | 4 | 1 | 399 | 92 | 494 | 5.33e-126 | 375 |
| MS.gene019248.t1 | MTR_8g030620 | 45.161 | 403 | 212 | 6 | 1 | 397 | 99 | 498 | 9.76e-118 | 352 |
| MS.gene019248.t1 | MTR_5g080360 | 44.853 | 408 | 206 | 9 | 1 | 397 | 74 | 473 | 1.27e-112 | 338 |
| MS.gene019248.t1 | MTR_7g075930 | 47.059 | 85 | 25 | 2 | 141 | 225 | 3 | 67 | 1.10e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019248.t1 | AT1G06520 | 57.353 | 408 | 163 | 6 | 1 | 397 | 178 | 585 | 1.97e-159 | 461 |
| MS.gene019248.t1 | AT2G38110 | 48.157 | 407 | 200 | 6 | 1 | 400 | 96 | 498 | 6.86e-124 | 367 |
| MS.gene019248.t1 | AT4G01950 | 47.783 | 406 | 198 | 9 | 5 | 398 | 116 | 519 | 2.21e-121 | 362 |
| MS.gene019248.t1 | AT4G01950 | 47.783 | 406 | 198 | 9 | 5 | 398 | 144 | 547 | 1.05e-120 | 361 |
| MS.gene019248.t1 | AT1G02390 | 47.317 | 410 | 202 | 8 | 4 | 399 | 121 | 530 | 1.89e-120 | 360 |
| MS.gene019248.t1 | AT4G00400 | 44.554 | 404 | 213 | 7 | 1 | 397 | 94 | 493 | 1.21e-116 | 349 |
| MS.gene019248.t1 | AT1G01610 | 45.432 | 405 | 209 | 8 | 1 | 397 | 94 | 494 | 7.26e-115 | 345 |
| MS.gene019248.t1 | AT3G11430 | 47.525 | 404 | 199 | 10 | 1 | 396 | 83 | 481 | 3.69e-114 | 343 |
| MS.gene019248.t1 | AT5G06090 | 45.700 | 407 | 204 | 10 | 1 | 397 | 81 | 480 | 1.20e-112 | 339 |
| MS.gene019248.t1 | AT3G11325 | 42.222 | 270 | 120 | 3 | 129 | 397 | 139 | 373 | 7.39e-66 | 215 |
| MS.gene019248.t1 | AT3G11325 | 42.222 | 270 | 120 | 3 | 129 | 397 | 136 | 370 | 9.60e-66 | 214 |
Find 76 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCACTGGTTTGATTTCT+AGG | 0.153443 | 3.2:+40172989 | MS.gene019248:CDS |
| CCAGCACAAGTGAGTTCTTT+TGG | 0.209499 | 3.2:-40174227 | None:intergenic |
| CCTTAAGGCTTATGAGGTTT+TGG | 0.241485 | 3.2:+40172846 | MS.gene019248:CDS |
| CTGCCATCATGAAATATTAA+TGG | 0.272082 | 3.2:-40173588 | None:intergenic |
| CGGAATTCTTCGCTCCTATT+AGG | 0.303073 | 3.2:+40173916 | MS.gene019248:CDS |
| AAAAGAGTTGGGTGATGCTT+TGG | 0.317799 | 3.2:+40174286 | MS.gene019248:CDS |
| TCATGAAATATTAATGGCTT+TGG | 0.325007 | 3.2:-40173582 | None:intergenic |
| TCCCTACAAGTTGTTCCTTC+AGG | 0.332104 | 3.2:-40174020 | None:intergenic |
| CATGGAGAATCTTAACCTTA+AGG | 0.353285 | 3.2:+40172831 | MS.gene019248:CDS |
| CACTTGCGTGCCTAGAGTTA+TGG | 0.356221 | 3.2:+40172894 | MS.gene019248:CDS |
| GTCAAACTCATTGTCCTAAT+AGG | 0.358918 | 3.2:-40173930 | None:intergenic |
| GATAAATATATGATGTTAGC+TGG | 0.365163 | 3.2:+40174338 | MS.gene019248:CDS |
| CTTTCATTAATAACATTTAG+TGG | 0.365776 | 3.2:+40173729 | MS.gene019248:CDS |
| TCTTAACCTTAAGGCTTATG+AGG | 0.373376 | 3.2:+40172840 | MS.gene019248:CDS |
| TGTTGAACCTTCATTACAAA+TGG | 0.375878 | 3.2:+40173703 | MS.gene019248:CDS |
| GACTTCTAAAAGTGGATAAC+AGG | 0.377185 | 3.2:-40173674 | None:intergenic |
| AAAGAGTTGGGTGATGCTTT+GGG | 0.380680 | 3.2:+40174287 | MS.gene019248:CDS |
| GATATTCAGAACCAAGTAAA+GGG | 0.384394 | 3.2:+40173790 | MS.gene019248:CDS |
| CTTGGTTCTGAATATCTTTG+AGG | 0.385543 | 3.2:-40173783 | None:intergenic |
| ATGTTTATGTGGCTTCCAAT+AGG | 0.407531 | 3.2:+40173648 | MS.gene019248:CDS |
| TAGGCATGGTTTGGTTGATA+AGG | 0.411704 | 3.2:+40173008 | MS.gene019248:CDS |
| TATGGTGGAAGGGTTTCTTA+AGG | 0.415468 | 3.2:+40172912 | MS.gene019248:CDS |
| ACATAAAGCTCCCCTTTACT+TGG | 0.417631 | 3.2:-40173801 | None:intergenic |
| AAAGTGTCCATTTGTAATGA+AGG | 0.421476 | 3.2:-40173710 | None:intergenic |
| CAACTGCTAATGGATTAAAA+TGG | 0.424230 | 3.2:+40174138 | MS.gene019248:CDS |
| AGATTCTCCATGTAAAACTT+TGG | 0.427361 | 3.2:-40172820 | None:intergenic |
| GTGGATAACAGGACTCCTAT+TGG | 0.438047 | 3.2:-40173663 | None:intergenic |
| TAGTATTGAAGTACTTGAAA+AGG | 0.439082 | 3.2:+40174202 | MS.gene019248:CDS |
| TTTGATTTCTAGGCATGGTT+TGG | 0.440519 | 3.2:+40172999 | MS.gene019248:CDS |
| ATATAATTAGCCACTTCATA+AGG | 0.451647 | 3.2:-40174260 | None:intergenic |
| AGAGAGTTGATGAAGGTGTA+GGG | 0.455310 | 3.2:-40173623 | None:intergenic |
| TCCCTTGGCATAATTGAGCT+TGG | 0.456933 | 3.2:-40173552 | None:intergenic |
| GTGCTGTTAATCCCTAAATC+AGG | 0.460166 | 3.2:-40173066 | None:intergenic |
| CCAAAACCTCATAAGCCTTA+AGG | 0.464434 | 3.2:-40172846 | None:intergenic |
| TAGAGAGTTGATGAAGGTGT+AGG | 0.464698 | 3.2:-40173624 | None:intergenic |
| ACTGTTGGATGTTATTTCAC+TGG | 0.471928 | 3.2:+40172976 | MS.gene019248:CDS |
| CATTAATATTTCATGATGGC+AGG | 0.471944 | 3.2:+40173589 | MS.gene019248:CDS |
| CAACTCTCTACATGTTTATG+TGG | 0.476453 | 3.2:+40173637 | MS.gene019248:CDS |
| TGCTAATGGATTAAAATGGT+TGG | 0.478561 | 3.2:+40174142 | MS.gene019248:CDS |
| CCAAAAGAACTCACTTGTGC+TGG | 0.501281 | 3.2:+40174227 | MS.gene019248:CDS |
| ACTGGTTTGATTTCTAGGCA+TGG | 0.501346 | 3.2:+40172994 | MS.gene019248:CDS |
| GTCCTGAAGGAACAACTTGT+AGG | 0.502469 | 3.2:+40174018 | MS.gene019248:CDS |
| CTAATTACAGGAAGCTTATG+TGG | 0.503258 | 3.2:+40173512 | MS.gene019248:intron |
| CACAAGAAGACTTCTAAAAG+TGG | 0.507763 | 3.2:-40173682 | None:intergenic |
| ACATTAACATTCACAGCCAC+TGG | 0.512902 | 3.2:-40174098 | None:intergenic |
| AGATATTCAGAACCAAGTAA+AGG | 0.514285 | 3.2:+40173789 | MS.gene019248:CDS |
| AAAGAACTCACTTGTGCTGG+TGG | 0.522091 | 3.2:+40174230 | MS.gene019248:CDS |
| GTGCCTAGAGTTATGGTGGA+AGG | 0.527001 | 3.2:+40172901 | MS.gene019248:CDS |
| GAACTAAATCTTAATAGATA+AGG | 0.528244 | 3.2:-40174044 | None:intergenic |
| ATAAATATATGATGTTAGCT+GGG | 0.539552 | 3.2:+40174339 | MS.gene019248:CDS |
| TGATAAGGATAGTGCTCTCA+AGG | 0.543624 | 3.2:+40173023 | MS.gene019248:CDS |
| TCCTGAAGGAACAACTTGTA+GGG | 0.543671 | 3.2:+40174019 | MS.gene019248:CDS |
| GTCCAAGCTCAATTATGCCA+AGG | 0.561023 | 3.2:+40173550 | MS.gene019248:CDS |
| AAGCCATTAATATTTCATGA+TGG | 0.563899 | 3.2:+40173585 | MS.gene019248:CDS |
| TGCTGATGAGATTGTTCCAG+TGG | 0.567844 | 3.2:+40174082 | MS.gene019248:CDS |
| TCCAAGCTCAATTATGCCAA+GGG | 0.568698 | 3.2:+40173551 | MS.gene019248:CDS |
| TGCCTAGAGTTATGGTGGAA+GGG | 0.568974 | 3.2:+40172902 | MS.gene019248:CDS |
| ATGATGTTAGCTGGGAATGA+AGG | 0.571083 | 3.2:+40174347 | MS.gene019248:CDS |
| AGGACATGGAAATGATTGCA+AGG | 0.571708 | 3.2:+40172788 | None:intergenic |
| GGTATAGTTCTGAATGTCAA+AGG | 0.574113 | 3.2:+40173750 | MS.gene019248:CDS |
| ATGCAAAAGTTGCTAAGTGA+AGG | 0.581573 | 3.2:+40173981 | MS.gene019248:CDS |
| TGGAAAATCTCCTTATGAAG+TGG | 0.581903 | 3.2:+40174250 | MS.gene019248:CDS |
| GATTTAGTTGTGTGTCCTGA+AGG | 0.591518 | 3.2:+40174005 | MS.gene019248:CDS |
| GGACATGGAAATGATTGCAA+GGG | 0.595734 | 3.2:+40172789 | None:intergenic |
| AGTACTTCAATACTATAACT+AGG | 0.596445 | 3.2:-40174194 | None:intergenic |
| GCTACAGAGTTACACACTGT+TGG | 0.597779 | 3.2:+40172961 | MS.gene019248:CDS |
| TCAATACTATAACTAGGCCA+TGG | 0.601201 | 3.2:-40174188 | None:intergenic |
| TTGAGTGTACAAATATTACA+AGG | 0.604181 | 3.2:+40174312 | MS.gene019248:CDS |
| AACCCTTCCACCATAACTCT+AGG | 0.605896 | 3.2:-40172904 | None:intergenic |
| TTGCGTGCCTAGAGTTATGG+TGG | 0.610298 | 3.2:+40172897 | MS.gene019248:CDS |
| AGCTTTATGTTTGTACACAT+AGG | 0.633185 | 3.2:+40173814 | MS.gene019248:CDS |
| GTGTACAAATATTACAAGGA+GGG | 0.638648 | 3.2:+40174316 | MS.gene019248:CDS |
| AACATGTAGAGAGTTGATGA+AGG | 0.639833 | 3.2:-40173630 | None:intergenic |
| GTACAGCATAAGCAAAGTGT+CGG | 0.645635 | 3.2:+40173896 | MS.gene019248:CDS |
| ATATTCAGAACCAAGTAAAG+GGG | 0.663809 | 3.2:+40173791 | MS.gene019248:CDS |
| AGTGTACAAATATTACAAGG+AGG | 0.666630 | 3.2:+40174315 | MS.gene019248:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATACAAAAAGAGTT+GGG | + | chr3.2:40174275-40174294 | MS.gene019248:CDS | 15.0% |
| !! | ACTACAATATTATAATGAAT+TGG | + | chr3.2:40173423-40173442 | MS.gene019248:intron | 15.0% |
| !! | TAATTATATACAAAAAGAGT+TGG | + | chr3.2:40174274-40174293 | MS.gene019248:CDS | 15.0% |
| !! | TTATAATATTGTAGTTAGAT+AGG | - | chr3.2:40173418-40173437 | None:intergenic | 15.0% |
| !!! | AAATAGTTGATTTAAGAATA+TGG | - | chr3.2:40173314-40173333 | None:intergenic | 15.0% |
| !! | ATAAATATATGATGTTAGCT+GGG | + | chr3.2:40174339-40174358 | MS.gene019248:CDS | 20.0% |
| !! | CTTTCATTAATAACATTTAG+TGG | + | chr3.2:40173729-40173748 | MS.gene019248:CDS | 20.0% |
| !! | GAACTAAATCTTAATAGATA+AGG | - | chr3.2:40174047-40174066 | None:intergenic | 20.0% |
| !! | TAGTAGGAAAATGAAATTAA+AGG | - | chr3.2:40173452-40173471 | None:intergenic | 20.0% |
| !!! | TTATTTTATCTCTTCTTGTA+AGG | + | chr3.2:40173104-40173123 | MS.gene019248:CDS | 20.0% |
| ! | AAGCCATTAATATTTCATGA+TGG | + | chr3.2:40173585-40173604 | MS.gene019248:CDS | 25.0% |
| ! | AGTACTTCAATACTATAACT+AGG | - | chr3.2:40174197-40174216 | None:intergenic | 25.0% |
| ! | ATATAATTAGCCACTTCATA+AGG | - | chr3.2:40174263-40174282 | None:intergenic | 25.0% |
| ! | CTAAGAAATATGCTAATTAC+AGG | + | chr3.2:40173500-40173519 | MS.gene019248:intron | 25.0% |
| ! | GAAACTGAGGTAAAAAAAAA+GGG | - | chr3.2:40173273-40173292 | None:intergenic | 25.0% |
| ! | GACTTAGATATAATTGAAGA+TGG | - | chr3.2:40173481-40173500 | None:intergenic | 25.0% |
| ! | GAGATAAAAATCCTGATTTA+GGG | + | chr3.2:40173055-40173074 | MS.gene019248:CDS | 25.0% |
| ! | GATAAATATATGATGTTAGC+TGG | + | chr3.2:40174338-40174357 | MS.gene019248:CDS | 25.0% |
| ! | TAAAAAAAAAGGGTTCAAGA+GGG | - | chr3.2:40173263-40173282 | None:intergenic | 25.0% |
| ! | TCATGAAATATTAATGGCTT+TGG | - | chr3.2:40173585-40173604 | None:intergenic | 25.0% |
| ! | TGAAACTGAGGTAAAAAAAA+AGG | - | chr3.2:40173274-40173293 | None:intergenic | 25.0% |
| ! | TTGAAGATGGAATAATTAGT+AGG | - | chr3.2:40173468-40173487 | None:intergenic | 25.0% |
| ! | TTGAGTGTACAAATATTACA+AGG | + | chr3.2:40174312-40174331 | MS.gene019248:CDS | 25.0% |
| !! | AGTTTTACCAAAGTTTTACA+TGG | + | chr3.2:40172813-40172832 | MS.gene019248:CDS | 25.0% |
| !! | GTTAATGTGAGTATGTTTTA+TGG | + | chr3.2:40174113-40174132 | MS.gene019248:CDS | 25.0% |
| !! | TAGTATTGAAGTACTTGAAA+AGG | + | chr3.2:40174202-40174221 | MS.gene019248:CDS | 25.0% |
| !!! | TTCTATTTTTGATGAATCCA+TGG | + | chr3.2:40174171-40174190 | MS.gene019248:CDS | 25.0% |
| ACATTTGATCAATGAAACTG+AGG | - | chr3.2:40173286-40173305 | None:intergenic | 30.0% | |
| AGATATTCAGAACCAAGTAA+AGG | + | chr3.2:40173789-40173808 | MS.gene019248:CDS | 30.0% | |
| AGATTCTCCATGTAAAACTT+TGG | - | chr3.2:40172823-40172842 | None:intergenic | 30.0% | |
| AGTGTACAAATATTACAAGG+AGG | + | chr3.2:40174315-40174334 | MS.gene019248:CDS | 30.0% | |
| ATATTCAGAACCAAGTAAAG+GGG | + | chr3.2:40173791-40173810 | MS.gene019248:CDS | 30.0% | |
| CATTAATATTTCATGATGGC+AGG | + | chr3.2:40173589-40173608 | MS.gene019248:CDS | 30.0% | |
| CTGCCATCATGAAATATTAA+TGG | - | chr3.2:40173591-40173610 | None:intergenic | 30.0% | |
| GATATTCAGAACCAAGTAAA+GGG | + | chr3.2:40173790-40173809 | MS.gene019248:CDS | 30.0% | |
| GGAGATAAAAATCCTGATTT+AGG | + | chr3.2:40173054-40173073 | MS.gene019248:CDS | 30.0% | |
| GTAAAAAAAAAGGGTTCAAG+AGG | - | chr3.2:40173264-40173283 | None:intergenic | 30.0% | |
| GTGTACAAATATTACAAGGA+GGG | + | chr3.2:40174316-40174335 | MS.gene019248:CDS | 30.0% | |
| TGTTGAACCTTCATTACAAA+TGG | + | chr3.2:40173703-40173722 | MS.gene019248:CDS | 30.0% | |
| ! | AAAGTGTCCATTTGTAATGA+AGG | - | chr3.2:40173713-40173732 | None:intergenic | 30.0% |
| ! | AGCTTTATGTTTGTACACAT+AGG | + | chr3.2:40173814-40173833 | MS.gene019248:CDS | 30.0% |
| ! | TTGATGTGACTTTGATGATT+TGG | - | chr3.2:40173342-40173361 | None:intergenic | 30.0% |
| ! | TTTTATGGTACAACTGCTAA+TGG | + | chr3.2:40174128-40174147 | MS.gene019248:CDS | 30.0% |
| !! | ATTTCACTGGTTTGATTTCT+AGG | + | chr3.2:40172989-40173008 | MS.gene019248:CDS | 30.0% |
| !! | CAACTGCTAATGGATTAAAA+TGG | + | chr3.2:40174138-40174157 | MS.gene019248:CDS | 30.0% |
| !! | TGCTAATGGATTAAAATGGT+TGG | + | chr3.2:40174142-40174161 | MS.gene019248:CDS | 30.0% |
| AGACTCATGCTAAGAAAAAC+AGG | - | chr3.2:40173852-40173871 | None:intergenic | 35.0% | |
| ATGATGTGAGACTCCTAATT+TGG | + | chr3.2:40173229-40173248 | MS.gene019248:intron | 35.0% | |
| ATGCAAAAGTTGCTAAGTGA+AGG | + | chr3.2:40173981-40174000 | MS.gene019248:CDS | 35.0% | |
| ATGTTTATGTGGCTTCCAAT+AGG | + | chr3.2:40173648-40173667 | MS.gene019248:CDS | 35.0% | |
| CAACTCTCTACATGTTTATG+TGG | + | chr3.2:40173637-40173656 | MS.gene019248:CDS | 35.0% | |
| CATGGAGAATCTTAACCTTA+AGG | + | chr3.2:40172831-40172850 | MS.gene019248:CDS | 35.0% | |
| CTAATTACAGGAAGCTTATG+TGG | + | chr3.2:40173512-40173531 | MS.gene019248:intron | 35.0% | |
| GTCAAACTCATTGTCCTAAT+AGG | - | chr3.2:40173933-40173952 | None:intergenic | 35.0% | |
| TCAATACTATAACTAGGCCA+TGG | - | chr3.2:40174191-40174210 | None:intergenic | 35.0% | |
| TCTTAACCTTAAGGCTTATG+AGG | + | chr3.2:40172840-40172859 | MS.gene019248:CDS | 35.0% | |
| TGGAAAATCTCCTTATGAAG+TGG | + | chr3.2:40174250-40174269 | MS.gene019248:CDS | 35.0% | |
| ! | CACAAGAAGACTTCTAAAAG+TGG | - | chr3.2:40173685-40173704 | None:intergenic | 35.0% |
| ! | GACTTCTAAAAGTGGATAAC+AGG | - | chr3.2:40173677-40173696 | None:intergenic | 35.0% |
| ! | TTTGATTTCTAGGCATGGTT+TGG | + | chr3.2:40172999-40173018 | MS.gene019248:CDS | 35.0% |
| !! | AACATGTAGAGAGTTGATGA+AGG | - | chr3.2:40173633-40173652 | None:intergenic | 35.0% |
| !! | ACTGTTGGATGTTATTTCAC+TGG | + | chr3.2:40172976-40172995 | MS.gene019248:CDS | 35.0% |
| !! | CTTGGTTCTGAATATCTTTG+AGG | - | chr3.2:40173786-40173805 | None:intergenic | 35.0% |
| !! | GGTATAGTTCTGAATGTCAA+AGG | + | chr3.2:40173750-40173769 | MS.gene019248:CDS | 35.0% |
| !!! | AGTGCTCTCAAGGATTTTTT+TGG | + | chr3.2:40173033-40173052 | MS.gene019248:CDS | 35.0% |
| !!! | ATGAGGTTTTGGTTTCTGTA+GGG | + | chr3.2:40172857-40172876 | MS.gene019248:CDS | 35.0% |
| !!! | TATGAGGTTTTGGTTTCTGT+AGG | + | chr3.2:40172856-40172875 | MS.gene019248:CDS | 35.0% |
| AAAAGAGTTGGGTGATGCTT+TGG | + | chr3.2:40174286-40174305 | MS.gene019248:CDS | 40.0% | |
| AAAGAGTTGGGTGATGCTTT+GGG | + | chr3.2:40174287-40174306 | MS.gene019248:CDS | 40.0% | |
| ACATAAAGCTCCCCTTTACT+TGG | - | chr3.2:40173804-40173823 | None:intergenic | 40.0% | |
| ACATTAACATTCACAGCCAC+TGG | - | chr3.2:40174101-40174120 | None:intergenic | 40.0% | |
| ATGATGTTAGCTGGGAATGA+AGG | + | chr3.2:40174347-40174366 | MS.gene019248:CDS | 40.0% | |
| CCAAAACCTCATAAGCCTTA+AGG | - | chr3.2:40172849-40172868 | None:intergenic | 40.0% | |
| GAGGGTTTCTCATCCAAATT+AGG | - | chr3.2:40173245-40173264 | None:intergenic | 40.0% | |
| GATTTAGTTGTGTGTCCTGA+AGG | + | chr3.2:40174005-40174024 | MS.gene019248:CDS | 40.0% | |
| GTACAGCATAAGCAAAGTGT+CGG | + | chr3.2:40173896-40173915 | MS.gene019248:CDS | 40.0% | |
| TCCAAGCTCAATTATGCCAA+GGG | + | chr3.2:40173551-40173570 | MS.gene019248:CDS | 40.0% | |
| TCCTGAAGGAACAACTTGTA+GGG | + | chr3.2:40174019-40174038 | MS.gene019248:CDS | 40.0% | |
| TGATAAGGATAGTGCTCTCA+AGG | + | chr3.2:40173023-40173042 | MS.gene019248:CDS | 40.0% | |
| ! | CCTTAAGGCTTATGAGGTTT+TGG | + | chr3.2:40172846-40172865 | MS.gene019248:CDS | 40.0% |
| ! | GTGCTGTTAATCCCTAAATC+AGG | - | chr3.2:40173069-40173088 | None:intergenic | 40.0% |
| ! | TATGGTGGAAGGGTTTCTTA+AGG | + | chr3.2:40172912-40172931 | MS.gene019248:CDS | 40.0% |
| !! | ACTGGTTTGATTTCTAGGCA+TGG | + | chr3.2:40172994-40173013 | MS.gene019248:CDS | 40.0% |
| !! | AGAGAGTTGATGAAGGTGTA+GGG | - | chr3.2:40173626-40173645 | None:intergenic | 40.0% |
| !! | TAGAGAGTTGATGAAGGTGT+AGG | - | chr3.2:40173627-40173646 | None:intergenic | 40.0% |
| !! | TAGGCATGGTTTGGTTGATA+AGG | + | chr3.2:40173008-40173027 | MS.gene019248:CDS | 40.0% |
| AAAGAACTCACTTGTGCTGG+TGG | + | chr3.2:40174230-40174249 | MS.gene019248:CDS | 45.0% | |
| AACCCTTCCACCATAACTCT+AGG | - | chr3.2:40172907-40172926 | None:intergenic | 45.0% | |
| CCAAAAGAACTCACTTGTGC+TGG | + | chr3.2:40174227-40174246 | MS.gene019248:CDS | 45.0% | |
| CGGAATTCTTCGCTCCTATT+AGG | + | chr3.2:40173916-40173935 | MS.gene019248:CDS | 45.0% | |
| GCTACAGAGTTACACACTGT+TGG | + | chr3.2:40172961-40172980 | MS.gene019248:CDS | 45.0% | |
| GTCCAAGCTCAATTATGCCA+AGG | + | chr3.2:40173550-40173569 | MS.gene019248:CDS | 45.0% | |
| GTCCTGAAGGAACAACTTGT+AGG | + | chr3.2:40174018-40174037 | MS.gene019248:CDS | 45.0% | |
| GTGGATAACAGGACTCCTAT+TGG | - | chr3.2:40173666-40173685 | None:intergenic | 45.0% | |
| TCCCTACAAGTTGTTCCTTC+AGG | - | chr3.2:40174023-40174042 | None:intergenic | 45.0% | |
| TCCCTTGGCATAATTGAGCT+TGG | - | chr3.2:40173555-40173574 | None:intergenic | 45.0% | |
| TGCTGATGAGATTGTTCCAG+TGG | + | chr3.2:40174082-40174101 | MS.gene019248:CDS | 45.0% | |
| ! | CCAGCACAAGTGAGTTCTTT+TGG | - | chr3.2:40174230-40174249 | None:intergenic | 45.0% |
| ! | TGCCTAGAGTTATGGTGGAA+GGG | + | chr3.2:40172902-40172921 | MS.gene019248:CDS | 45.0% |
| !!! | GGCTTTGGATACTTTTCCCT+TGG | - | chr3.2:40173570-40173589 | None:intergenic | 45.0% |
| CACTTGCGTGCCTAGAGTTA+TGG | + | chr3.2:40172894-40172913 | MS.gene019248:CDS | 50.0% | |
| TTGCGTGCCTAGAGTTATGG+TGG | + | chr3.2:40172897-40172916 | MS.gene019248:CDS | 50.0% | |
| ! | GTGCCTAGAGTTATGGTGGA+AGG | + | chr3.2:40172901-40172920 | MS.gene019248:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 40172793 | 40174391 | 40172793 | ID=MS.gene019248 |
| chr3.2 | mRNA | 40172793 | 40174391 | 40172793 | ID=MS.gene019248.t1;Parent=MS.gene019248 |
| chr3.2 | exon | 40172793 | 40173125 | 40172793 | ID=MS.gene019248.t1.exon1;Parent=MS.gene019248.t1 |
| chr3.2 | CDS | 40172793 | 40173125 | 40172793 | ID=cds.MS.gene019248.t1;Parent=MS.gene019248.t1 |
| chr3.2 | exon | 40173522 | 40174391 | 40173522 | ID=MS.gene019248.t1.exon2;Parent=MS.gene019248.t1 |
| chr3.2 | CDS | 40173522 | 40174391 | 40173522 | ID=cds.MS.gene019248.t1;Parent=MS.gene019248.t1 |
| Gene Sequence |
| Protein sequence |
