Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20875.t1 | XP_003591372.1 | 98.4 | 429 | 7 | 0 | 1 | 429 | 114 | 542 | 3.20E-241 | 844 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20875.t1 | Q9FZ22 | 56.5 | 430 | 170 | 8 | 1 | 416 | 101 | 527 | 1.7e-134 | 480.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20875.t1 | G7ICV2 | 98.4 | 429 | 7 | 0 | 1 | 429 | 114 | 542 | 2.3e-241 | 844.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062354 | MS.gene20875 | PPI |
| MS.gene030054 | MS.gene20875 | PPI |
| MS.gene019248 | MS.gene20875 | PPI |
| MS.gene017126 | MS.gene20875 | PPI |
| MS.gene038357 | MS.gene20875 | PPI |
| MS.gene69575 | MS.gene20875 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20875.t1 | MTR_1g086650 | 98.368 | 429 | 7 | 0 | 1 | 429 | 114 | 542 | 0.0 | 880 |
| MS.gene20875.t1 | MTR_5g061520 | 50.235 | 426 | 203 | 6 | 1 | 422 | 67 | 487 | 8.30e-144 | 419 |
| MS.gene20875.t1 | MTR_5g091660 | 49.420 | 431 | 201 | 10 | 1 | 423 | 115 | 536 | 1.77e-134 | 397 |
| MS.gene20875.t1 | MTR_3g448430 | 47.518 | 423 | 202 | 8 | 3 | 416 | 100 | 511 | 1.63e-124 | 370 |
| MS.gene20875.t1 | MTR_4g415290 | 42.891 | 422 | 228 | 7 | 1 | 416 | 75 | 489 | 4.25e-107 | 325 |
| MS.gene20875.t1 | MTR_1g040500 | 41.121 | 428 | 238 | 7 | 2 | 421 | 75 | 496 | 6.05e-106 | 325 |
| MS.gene20875.t1 | MTR_7g067380 | 43.091 | 427 | 227 | 9 | 1 | 420 | 78 | 495 | 2.45e-104 | 318 |
| MS.gene20875.t1 | MTR_8g030620 | 41.509 | 424 | 233 | 7 | 1 | 416 | 81 | 497 | 1.57e-103 | 317 |
| MS.gene20875.t1 | MTR_3g048330 | 54.255 | 282 | 119 | 4 | 144 | 420 | 1 | 277 | 1.18e-102 | 306 |
| MS.gene20875.t1 | MTR_5g080360 | 41.822 | 428 | 226 | 11 | 1 | 416 | 56 | 472 | 1.63e-101 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20875.t1 | AT1G02390 | 56.744 | 430 | 169 | 8 | 1 | 416 | 101 | 527 | 3.77e-168 | 483 |
| MS.gene20875.t1 | AT4G01950 | 54.930 | 426 | 179 | 7 | 1 | 416 | 95 | 517 | 6.91e-163 | 469 |
| MS.gene20875.t1 | AT4G01950 | 54.930 | 426 | 179 | 7 | 1 | 416 | 123 | 545 | 3.20e-162 | 468 |
| MS.gene20875.t1 | AT1G06520 | 47.897 | 428 | 204 | 10 | 3 | 416 | 162 | 584 | 4.66e-124 | 372 |
| MS.gene20875.t1 | AT3G11430 | 41.259 | 429 | 225 | 9 | 2 | 416 | 66 | 481 | 1.23e-105 | 322 |
| MS.gene20875.t1 | AT2G38110 | 42.254 | 426 | 227 | 8 | 1 | 416 | 78 | 494 | 1.00e-101 | 312 |
| MS.gene20875.t1 | AT5G06090 | 41.549 | 426 | 226 | 12 | 3 | 416 | 65 | 479 | 3.29e-100 | 308 |
| MS.gene20875.t1 | AT4G00400 | 40.553 | 434 | 237 | 10 | 1 | 423 | 76 | 499 | 8.33e-99 | 304 |
| MS.gene20875.t1 | AT1G01610 | 39.815 | 432 | 230 | 10 | 1 | 416 | 76 | 493 | 9.56e-96 | 296 |
| MS.gene20875.t1 | AT3G11325 | 39.925 | 268 | 123 | 4 | 150 | 416 | 142 | 372 | 2.29e-59 | 199 |
| MS.gene20875.t1 | AT3G11325 | 39.925 | 268 | 123 | 4 | 150 | 416 | 139 | 369 | 2.54e-59 | 199 |
Find 91 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGAAAATAAGTGATTT+TGG | 0.111061 | 1.3:+61417820 | None:intergenic |
| GACCGTGACCGTTGGATTTA+TGG | 0.139657 | 1.3:+61417617 | None:intergenic |
| ACATCTTCCAAGAAGAATTT+TGG | 0.212114 | 1.3:+61418632 | None:intergenic |
| GTAGAGAACCTTATTTATTA+AGG | 0.241243 | 1.3:-61417372 | MS.gene20875:CDS |
| AACATTGCTAAGGACTTTAA+TGG | 0.243494 | 1.3:+61417772 | None:intergenic |
| ACTTTAATGGAGTTGGTGTT+AGG | 0.279488 | 1.3:+61417785 | None:intergenic |
| AGTTCTGCCAAAATTCTTCT+TGG | 0.295056 | 1.3:-61418639 | MS.gene20875:CDS |
| ACTCCGTTATTAACATTTAG+TGG | 0.297118 | 1.3:-61417673 | MS.gene20875:CDS |
| GGGCTAAACCTTAATAAATA+AGG | 0.309796 | 1.3:+61417364 | None:intergenic |
| TCTCTACAAGTGGTCCCTTC+TGG | 0.310793 | 1.3:+61417388 | None:intergenic |
| TGGTTACTATGTTGGGTTGA+TGG | 0.314893 | 1.3:-61418468 | MS.gene20875:CDS |
| AAAGCAGAAAACTTTAGAAT+TGG | 0.326140 | 1.3:-61418668 | MS.gene20875:CDS |
| TTTCCTCGCCGATCCTTTCC+CGG | 0.335386 | 1.3:-61417233 | MS.gene20875:CDS |
| ACCGTGACCGTTGGATTTAT+GGG | 0.336351 | 1.3:+61417618 | None:intergenic |
| GCGGAGATTGGTAACACTTT+GGG | 0.373212 | 1.3:-61417109 | MS.gene20875:CDS |
| TACCAATCTCCGCTTGGATA+TGG | 0.373360 | 1.3:+61417119 | None:intergenic |
| TAGTAATTTACCTAGTGTTA+TGG | 0.391849 | 1.3:-61418558 | MS.gene20875:CDS |
| GTGGGTCTAATAAGGTTCTA+TGG | 0.412472 | 1.3:+61417578 | None:intergenic |
| TGCTGGTAGAGAGCTGAAAA+TGG | 0.415660 | 1.3:-61418495 | MS.gene20875:CDS |
| TGGTTTGTGGTTACTATGTT+GGG | 0.432444 | 1.3:-61418475 | MS.gene20875:CDS |
| CTTTAATGGAGTTGGTGTTA+GGG | 0.435089 | 1.3:+61417786 | None:intergenic |
| AAAGGCTCTTTAGATATGAT+TGG | 0.442495 | 1.3:-61418401 | MS.gene20875:CDS |
| GCTAAGGACTTTAATGGAGT+TGG | 0.443363 | 1.3:+61417778 | None:intergenic |
| ATGGTTTGTGGTTACTATGT+TGG | 0.443488 | 1.3:-61418476 | MS.gene20875:CDS |
| GAAATTGTGAAGGACGAACT+TGG | 0.444462 | 1.3:+61417188 | None:intergenic |
| AATGTAGAGTGGGTCTAATA+AGG | 0.445586 | 1.3:+61417570 | None:intergenic |
| TTGATGCTAGCTGGTAATGA+AGG | 0.447543 | 1.3:-61417049 | MS.gene20875:CDS |
| TGCAAGTGTGATTCTAATAA+CGG | 0.459105 | 1.3:+61417720 | None:intergenic |
| AACCATATCCAAGCGGAGAT+TGG | 0.459393 | 1.3:-61417121 | MS.gene20875:CDS |
| TTTAATTGGTGCTATTATCT+CGG | 0.464009 | 1.3:+61417492 | None:intergenic |
| AGCGGAGATTGGTAACACTT+TGG | 0.468303 | 1.3:-61417110 | MS.gene20875:CDS |
| AAATTCTTCTTGGAAGATGT+TGG | 0.491109 | 1.3:-61418629 | MS.gene20875:CDS |
| TGCTAGTGGTCTAAAGGCAT+TGG | 0.493274 | 1.3:-61417266 | MS.gene20875:CDS |
| GCGAGAATGCTGAGGAATGT+AGG | 0.496088 | 1.3:-61417156 | MS.gene20875:CDS |
| GATAAGTATTTGATGCTAGC+TGG | 0.498355 | 1.3:-61417058 | MS.gene20875:CDS |
| AGTAACTCAACCGTGTAAGC+CGG | 0.512367 | 1.3:+61417214 | None:intergenic |
| CACACATTTCAGAAAACAAA+GGG | 0.516657 | 1.3:+61417344 | None:intergenic |
| GTAACTCAACCGTGTAAGCC+GGG | 0.517316 | 1.3:+61417215 | None:intergenic |
| ACGTGTGTATCAACAGCAAC+TGG | 0.520127 | 1.3:+61417310 | None:intergenic |
| TTGAGTGTACTAAGCTTACA+AGG | 0.526540 | 1.3:-61417084 | MS.gene20875:CDS |
| TACAACTGCTAGTGGTCTAA+AGG | 0.529525 | 1.3:-61417272 | MS.gene20875:CDS |
| CGATCCTTTCCCGGCTTACA+CGG | 0.534252 | 1.3:-61417224 | MS.gene20875:CDS |
| GATAATAGCACCAATTAAAA+CGG | 0.535150 | 1.3:-61417488 | MS.gene20875:CDS |
| GATGTAGTTGTGTGTCCAGA+AGG | 0.535316 | 1.3:-61417403 | MS.gene20875:CDS |
| TGATGCTAGCTGGTAATGAA+GGG | 0.536177 | 1.3:-61417048 | MS.gene20875:CDS |
| CACAAGGTGACAAGAGAGGT+TGG | 0.537297 | 1.3:-61417867 | MS.gene20875:CDS |
| CGGGAATTGATGATGTGAGA+CGG | 0.539136 | 1.3:+61417647 | None:intergenic |
| TGGTCTAAAGGCATTGGACC+CGG | 0.543424 | 1.3:-61417260 | MS.gene20875:CDS |
| CAATCAAGGTGGGAAGAAAG+TGG | 0.547282 | 1.3:-61418585 | MS.gene20875:CDS |
| TAATTTACCTAGTGTTATGG+TGG | 0.550460 | 1.3:-61418555 | MS.gene20875:CDS |
| AAACAAGTTCATGAAGGGAA+AGG | 0.550915 | 1.3:-61418419 | MS.gene20875:CDS |
| AGTCCACTAAATGTTAATAA+CGG | 0.558530 | 1.3:+61417670 | None:intergenic |
| ACGGAAAGGATTATTCCGTA+TGG | 0.559562 | 1.3:+61417739 | None:intergenic |
| AGTCCTTAGCAATGTTAATG+TGG | 0.560405 | 1.3:-61417765 | MS.gene20875:CDS |
| CTTTGAAACAAGTTCATGAA+GGG | 0.561165 | 1.3:-61418424 | MS.gene20875:CDS |
| GCCCATAAATCCAACGGTCA+CGG | 0.563876 | 1.3:-61417619 | MS.gene20875:CDS |
| ATGTTAATGTGGCTTCCATA+CGG | 0.564900 | 1.3:-61417754 | MS.gene20875:CDS |
| AGAGAGCTGAAAATGGTTTG+TGG | 0.566065 | 1.3:-61418488 | MS.gene20875:CDS |
| TCACACATTTCAGAAAACAA+AGG | 0.572407 | 1.3:+61417343 | None:intergenic |
| GCTTTGAAACAAGTTCATGA+AGG | 0.575993 | 1.3:-61418425 | MS.gene20875:CDS |
| TAAATAAGGTTCTCTACAAG+TGG | 0.581152 | 1.3:+61417378 | None:intergenic |
| CGTGTAAGCCGGGAAAGGAT+CGG | 0.581422 | 1.3:+61417225 | None:intergenic |
| TTGAGGTGATCAATCAAGGT+GGG | 0.582634 | 1.3:-61418595 | MS.gene20875:CDS |
| AAATTGTGAAGGACGAACTT+GGG | 0.587318 | 1.3:+61417189 | None:intergenic |
| GTAAAGATGACCGTGACCGT+TGG | 0.597793 | 1.3:+61417609 | None:intergenic |
| TTAGGGCTAGTCTTCCATCA+TGG | 0.606968 | 1.3:+61417803 | None:intergenic |
| ATGAAAACGTTGTTACAACA+AGG | 0.607933 | 1.3:-61417427 | MS.gene20875:CDS |
| AAACTCTCCACCATAACACT+AGG | 0.610998 | 1.3:+61418548 | None:intergenic |
| AAGTGTTACCAATCTCCGCT+TGG | 0.611648 | 1.3:+61417113 | None:intergenic |
| AACGAGAATGAAATGTAGAG+TGG | 0.611767 | 1.3:+61417559 | None:intergenic |
| GAAAACGTTGTTACAACAAG+GGG | 0.612525 | 1.3:-61417425 | MS.gene20875:CDS |
| TCAACCGTGTAAGCCGGGAA+AGG | 0.614668 | 1.3:+61417220 | None:intergenic |
| ACGAGAATGAAATGTAGAGT+GGG | 0.616332 | 1.3:+61417560 | None:intergenic |
| GAAGTCTATGCTGTCTCACA+AGG | 0.616778 | 1.3:-61417883 | MS.gene20875:CDS |
| TCAGCATTCTCGCTAACGCG+TGG | 0.619138 | 1.3:+61417166 | None:intergenic |
| GTGTGATTCTAATAACGGAA+AGG | 0.623067 | 1.3:+61417725 | None:intergenic |
| GTTACACAAGAAATTAATTG+CGG | 0.625898 | 1.3:-61417539 | MS.gene20875:CDS |
| ACGCGTTAGCGAGAATGCTG+AGG | 0.629609 | 1.3:-61417164 | MS.gene20875:CDS |
| AAGCCACATTAACATTGCTA+AGG | 0.632191 | 1.3:+61417762 | None:intergenic |
| ATGTAGTTGTGTGTCCAGAA+GGG | 0.632491 | 1.3:-61417402 | MS.gene20875:CDS |
| AATCAAGGTGGGAAGAAAGT+GGG | 0.634730 | 1.3:-61418584 | MS.gene20875:CDS |
| CTAACGCGTGGAAATTGTGA+AGG | 0.640306 | 1.3:+61417178 | None:intergenic |
| GAAAATGCCCATAAATCCAA+CGG | 0.643806 | 1.3:-61417625 | MS.gene20875:CDS |
| TGAAAACGTTGTTACAACAA+GGG | 0.645168 | 1.3:-61417426 | MS.gene20875:CDS |
| GTCTCACAAGGTGACAAGAG+AGG | 0.647294 | 1.3:-61417871 | MS.gene20875:CDS |
| GATGCTAGCTGGTAATGAAG+GGG | 0.656969 | 1.3:-61417047 | MS.gene20875:CDS |
| TTTGAGGTGATCAATCAAGG+TGG | 0.663961 | 1.3:-61418596 | MS.gene20875:CDS |
| GGTTATTGTTGACTGTTGCG+TGG | 0.688629 | 1.3:+61416998 | None:intergenic |
| TGAGGAATGTAGGTTTGAAG+TGG | 0.690751 | 1.3:-61417146 | MS.gene20875:CDS |
| AAGCCGGGAAAGGATCGGCG+AGG | 0.747967 | 1.3:+61417230 | None:intergenic |
| AGTGGCGAACCATATCCAAG+CGG | 0.769808 | 1.3:-61417128 | MS.gene20875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTGTATTTTTTTTTTA+AGG | + | chr1.3:61417734-61417753 | None:intergenic | 10.0% |
| !!! | TATTGTTTAATTTATTTTCT+AGG | - | chr1.3:61417668-61417687 | MS.gene20875:CDS | 10.0% |
| !!! | AATTTCTTTTCTAGATATAT+TGG | - | chr1.3:61417766-61417785 | MS.gene20875:CDS | 15.0% |
| !!! | AATTTATTTTCTAGGTATAC+TGG | - | chr1.3:61417676-61417695 | MS.gene20875:CDS | 20.0% |
| !!! | ATAAGTTGTTTTGTTATATC+AGG | - | chr1.3:61417805-61417824 | MS.gene20875:CDS | 20.0% |
| !!! | CAACTTATTAGTTTAATTCA+AGG | + | chr1.3:61417793-61417812 | None:intergenic | 20.0% |
| ! | AATTAATAGTTGGACACAAA+TGG | + | chr1.3:61417615-61417634 | None:intergenic | 25.0% |
| ! | AGTCCACTAAATGTTAATAA+CGG | + | chr1.3:61418043-61418062 | None:intergenic | 25.0% |
| ! | GATAATAGCACCAATTAAAA+CGG | - | chr1.3:61418222-61418241 | MS.gene20875:intron | 25.0% |
| ! | GTTACACAAGAAATTAATTG+CGG | - | chr1.3:61418171-61418190 | MS.gene20875:intron | 25.0% |
| ! | TAATTATTTGAGTCGTGTTA+AGG | - | chr1.3:61417434-61417453 | MS.gene20875:CDS | 25.0% |
| ! | TAGTAATTTACCTAGTGTTA+TGG | - | chr1.3:61417152-61417171 | MS.gene20875:CDS | 25.0% |
| !! | CATGGAAAATAAGTGATTTT+GGG | + | chr1.3:61417892-61417911 | None:intergenic | 25.0% |
| !! | GTAGAGAACCTTATTTATTA+AGG | - | chr1.3:61418338-61418357 | MS.gene20875:intron | 25.0% |
| !! | TCATGGAAAATAAGTGATTT+TGG | + | chr1.3:61417893-61417912 | None:intergenic | 25.0% |
| !!! | AAAGCAGAAAACTTTAGAAT+TGG | - | chr1.3:61417042-61417061 | MS.gene20875:CDS | 25.0% |
| !!! | AAATCACTTATTTTCCATGA+TGG | - | chr1.3:61417893-61417912 | MS.gene20875:intron | 25.0% |
| !!! | TTGAAAATTGATTTTGTTGC+TGG | - | chr1.3:61417198-61417217 | MS.gene20875:CDS | 25.0% |
| !!! | TTTAATTGGTGCTATTATCT+CGG | + | chr1.3:61418221-61418240 | None:intergenic | 25.0% |
| AAAGGCTCTTTAGATATGAT+TGG | - | chr1.3:61417309-61417328 | MS.gene20875:CDS | 30.0% | |
| AAATTCTTCTTGGAAGATGT+TGG | - | chr1.3:61417081-61417100 | MS.gene20875:CDS | 30.0% | |
| AACATTGCTAAGGACTTTAA+TGG | + | chr1.3:61417941-61417960 | None:intergenic | 30.0% | |
| ACTCCGTTATTAACATTTAG+TGG | - | chr1.3:61418037-61418056 | MS.gene20875:intron | 30.0% | |
| ATGAAAACGTTGTTACAACA+AGG | - | chr1.3:61418283-61418302 | MS.gene20875:intron | 30.0% | |
| CACAAATGGTTAATGTACTA+TGG | + | chr1.3:61417601-61417620 | None:intergenic | 30.0% | |
| CACACATTTCAGAAAACAAA+GGG | + | chr1.3:61418369-61418388 | None:intergenic | 30.0% | |
| GGGCTAAACCTTAATAAATA+AGG | + | chr1.3:61418349-61418368 | None:intergenic | 30.0% | |
| GGTTAAGGAAAAATGTTTGA+CGG | + | chr1.3:61417580-61417599 | None:intergenic | 30.0% | |
| TAAATAAGGTTCTCTACAAG+TGG | + | chr1.3:61418335-61418354 | None:intergenic | 30.0% | |
| TAATTTACCTAGTGTTATGG+TGG | - | chr1.3:61417155-61417174 | MS.gene20875:CDS | 30.0% | |
| TCACACATTTCAGAAAACAA+AGG | + | chr1.3:61418370-61418389 | None:intergenic | 30.0% | |
| TGAAAACGTTGTTACAACAA+GGG | - | chr1.3:61418284-61418303 | MS.gene20875:intron | 30.0% | |
| TGCAAGTGTGATTCTAATAA+CGG | + | chr1.3:61417993-61418012 | None:intergenic | 30.0% | |
| TGGTTAATGTACTATGGTTA+AGG | + | chr1.3:61417595-61417614 | None:intergenic | 30.0% | |
| ! | ACATCTTCCAAGAAGAATTT+TGG | + | chr1.3:61417081-61417100 | None:intergenic | 30.0% |
| ! | TGAAATTTTCTCTTCTTGCA+AGG | - | chr1.3:61417362-61417381 | MS.gene20875:CDS | 30.0% |
| !! | CTTTGAAACAAGTTCATGAA+GGG | - | chr1.3:61417286-61417305 | MS.gene20875:CDS | 30.0% |
| !!! | ATGGTCATGATATGCTTTTT+TGG | - | chr1.3:61417015-61417034 | MS.gene20875:CDS | 30.0% |
| !!! | ATTTTTGAGGTGATCAATCA+AGG | - | chr1.3:61417111-61417130 | MS.gene20875:CDS | 30.0% |
| !!! | TGTTGGTTCAGAAATTTTTG+AGG | - | chr1.3:61417098-61417117 | MS.gene20875:CDS | 30.0% |
| AAACAAGTTCATGAAGGGAA+AGG | - | chr1.3:61417291-61417310 | MS.gene20875:CDS | 35.0% | |
| AAATTGTGAAGGACGAACTT+GGG | + | chr1.3:61418524-61418543 | None:intergenic | 35.0% | |
| AACGAGAATGAAATGTAGAG+TGG | + | chr1.3:61418154-61418173 | None:intergenic | 35.0% | |
| AAGCCACATTAACATTGCTA+AGG | + | chr1.3:61417951-61417970 | None:intergenic | 35.0% | |
| AATGTAGAGTGGGTCTAATA+AGG | + | chr1.3:61418143-61418162 | None:intergenic | 35.0% | |
| ACGAGAATGAAATGTAGAGT+GGG | + | chr1.3:61418153-61418172 | None:intergenic | 35.0% | |
| AGTCCTTAGCAATGTTAATG+TGG | - | chr1.3:61417945-61417964 | MS.gene20875:intron | 35.0% | |
| AGTTCTGCCAAAATTCTTCT+TGG | - | chr1.3:61417071-61417090 | MS.gene20875:CDS | 35.0% | |
| ATGTTAATGTGGCTTCCATA+CGG | - | chr1.3:61417956-61417975 | MS.gene20875:intron | 35.0% | |
| GAAAACGTTGTTACAACAAG+GGG | - | chr1.3:61418285-61418304 | MS.gene20875:intron | 35.0% | |
| GAAAATGCCCATAAATCCAA+CGG | - | chr1.3:61418085-61418104 | MS.gene20875:intron | 35.0% | |
| GATAAGTATTTGATGCTAGC+TGG | - | chr1.3:61418652-61418671 | MS.gene20875:CDS | 35.0% | |
| TTGAGTGTACTAAGCTTACA+AGG | - | chr1.3:61418626-61418645 | MS.gene20875:CDS | 35.0% | |
| ! | AACGGAGTTGAGATTTTGAA+TGG | + | chr1.3:61418025-61418044 | None:intergenic | 35.0% |
| ! | ATGGTTTGTGGTTACTATGT+TGG | - | chr1.3:61417234-61417253 | MS.gene20875:CDS | 35.0% |
| ! | GTGTGATTCTAATAACGGAA+AGG | + | chr1.3:61417988-61418007 | None:intergenic | 35.0% |
| ! | GTTGGATTTATGGGCATTTT+CGG | + | chr1.3:61418086-61418105 | None:intergenic | 35.0% |
| ! | TGGTTTGTGGTTACTATGTT+GGG | - | chr1.3:61417235-61417254 | MS.gene20875:CDS | 35.0% |
| ! | TTGGATTTATGGGCATTTTC+GGG | + | chr1.3:61418085-61418104 | None:intergenic | 35.0% |
| ! | TTTTATGGTACAACTGCTAG+TGG | - | chr1.3:61418430-61418449 | MS.gene20875:CDS | 35.0% |
| !! | ACTTTAATGGAGTTGGTGTT+AGG | + | chr1.3:61417928-61417947 | None:intergenic | 35.0% |
| !! | CTTTAATGGAGTTGGTGTTA+GGG | + | chr1.3:61417927-61417946 | None:intergenic | 35.0% |
| !! | GCTTTGAAACAAGTTCATGA+AGG | - | chr1.3:61417285-61417304 | MS.gene20875:CDS | 35.0% |
| AAACTCTCCACCATAACACT+AGG | + | chr1.3:61417165-61417184 | None:intergenic | 40.0% | |
| AATCAAGGTGGGAAGAAAGT+GGG | - | chr1.3:61417126-61417145 | MS.gene20875:CDS | 40.0% | |
| ACGGAAAGGATTATTCCGTA+TGG | + | chr1.3:61417974-61417993 | None:intergenic | 40.0% | |
| AGAGAGCTGAAAATGGTTTG+TGG | - | chr1.3:61417222-61417241 | MS.gene20875:CDS | 40.0% | |
| ATGTAGTTGTGTGTCCAGAA+GGG | - | chr1.3:61418308-61418327 | MS.gene20875:intron | 40.0% | |
| GAAATTGTGAAGGACGAACT+TGG | + | chr1.3:61418525-61418544 | None:intergenic | 40.0% | |
| GCTAAGGACTTTAATGGAGT+TGG | + | chr1.3:61417935-61417954 | None:intergenic | 40.0% | |
| GTGGGTCTAATAAGGTTCTA+TGG | + | chr1.3:61418135-61418154 | None:intergenic | 40.0% | |
| TACAACTGCTAGTGGTCTAA+AGG | - | chr1.3:61418438-61418457 | MS.gene20875:CDS | 40.0% | |
| TGAGGAATGTAGGTTTGAAG+TGG | - | chr1.3:61418564-61418583 | MS.gene20875:CDS | 40.0% | |
| TTGAGGTGATCAATCAAGGT+GGG | - | chr1.3:61417115-61417134 | MS.gene20875:CDS | 40.0% | |
| ! | AAGGGGTAGTTTTCAACAGA+AGG | - | chr1.3:61418680-61418699 | MS.gene20875:CDS | 40.0% |
| ! | ACACACGTCAGCATGTTTTA+TGG | - | chr1.3:61418415-61418434 | MS.gene20875:CDS | 40.0% |
| ! | TGATGCTAGCTGGTAATGAA+GGG | - | chr1.3:61418662-61418681 | MS.gene20875:CDS | 40.0% |
| ! | TTGATGCTAGCTGGTAATGA+AGG | - | chr1.3:61418661-61418680 | MS.gene20875:CDS | 40.0% |
| ! | TTTGAGGTGATCAATCAAGG+TGG | - | chr1.3:61417114-61417133 | MS.gene20875:CDS | 40.0% |
| !! | GACAAACGCACCGTTTTAAT+TGG | + | chr1.3:61418235-61418254 | None:intergenic | 40.0% |
| !! | TGGTTACTATGTTGGGTTGA+TGG | - | chr1.3:61417242-61417261 | MS.gene20875:CDS | 40.0% |
| AACCATATCCAAGCGGAGAT+TGG | - | chr1.3:61418589-61418608 | MS.gene20875:CDS | 45.0% | |
| AAGTGTTACCAATCTCCGCT+TGG | + | chr1.3:61418600-61418619 | None:intergenic | 45.0% | |
| ACCGTGACCGTTGGATTTAT+GGG | + | chr1.3:61418095-61418114 | None:intergenic | 45.0% | |
| ACGTGTGTATCAACAGCAAC+TGG | + | chr1.3:61418403-61418422 | None:intergenic | 45.0% | |
| AGTAACTCAACCGTGTAAGC+CGG | + | chr1.3:61418499-61418518 | None:intergenic | 45.0% | |
| CAATCAAGGTGGGAAGAAAG+TGG | - | chr1.3:61417125-61417144 | MS.gene20875:CDS | 45.0% | |
| CTAACGCGTGGAAATTGTGA+AGG | + | chr1.3:61418535-61418554 | None:intergenic | 45.0% | |
| GAAGTCTATGCTGTCTCACA+AGG | - | chr1.3:61417827-61417846 | MS.gene20875:CDS | 45.0% | |
| GATGTAGTTGTGTGTCCAGA+AGG | - | chr1.3:61418307-61418326 | MS.gene20875:intron | 45.0% | |
| TACCAATCTCCGCTTGGATA+TGG | + | chr1.3:61418594-61418613 | None:intergenic | 45.0% | |
| TGCTGGTAGAGAGCTGAAAA+TGG | - | chr1.3:61417215-61417234 | MS.gene20875:CDS | 45.0% | |
| ! | AGCGGAGATTGGTAACACTT+TGG | - | chr1.3:61418600-61418619 | MS.gene20875:CDS | 45.0% |
| ! | GATGCTAGCTGGTAATGAAG+GGG | - | chr1.3:61418663-61418682 | MS.gene20875:CDS | 45.0% |
| ! | GCGGAGATTGGTAACACTTT+GGG | - | chr1.3:61418601-61418620 | MS.gene20875:CDS | 45.0% |
| ! | TGCTAGTGGTCTAAAGGCAT+TGG | - | chr1.3:61418444-61418463 | MS.gene20875:CDS | 45.0% |
| !! | CGGGAATTGATGATGTGAGA+CGG | + | chr1.3:61418066-61418085 | None:intergenic | 45.0% |
| !! | TTAGGGCTAGTCTTCCATCA+TGG | + | chr1.3:61417910-61417929 | None:intergenic | 45.0% |
| !! | ATAAAAATTAAATTAATAGT+TGG | + | chr1.3:61417625-61417644 | None:intergenic | 5.0% |
| !! | ATTAAAATAAAATAATTGAT+TGG | + | chr1.3:61417418-61417437 | None:intergenic | 5.0% |
| AGTGGCGAACCATATCCAAG+CGG | - | chr1.3:61418582-61418601 | MS.gene20875:CDS | 50.0% | |
| CACAAGGTGACAAGAGAGGT+TGG | - | chr1.3:61417843-61417862 | MS.gene20875:CDS | 50.0% | |
| GACCGTGACCGTTGGATTTA+TGG | + | chr1.3:61418096-61418115 | None:intergenic | 50.0% | |
| GATCGGCGAGGAAAAAAACC+GGG | + | chr1.3:61418471-61418490 | None:intergenic | 50.0% | |
| GCCCATAAATCCAACGGTCA+CGG | - | chr1.3:61418091-61418110 | MS.gene20875:intron | 50.0% | |
| GCGAGAATGCTGAGGAATGT+AGG | - | chr1.3:61418554-61418573 | MS.gene20875:CDS | 50.0% | |
| GGATCGGCGAGGAAAAAAAC+CGG | + | chr1.3:61418472-61418491 | None:intergenic | 50.0% | |
| GTAAAGATGACCGTGACCGT+TGG | + | chr1.3:61418104-61418123 | None:intergenic | 50.0% | |
| GTAACTCAACCGTGTAAGCC+GGG | + | chr1.3:61418498-61418517 | None:intergenic | 50.0% | |
| GTCTCACAAGGTGACAAGAG+AGG | - | chr1.3:61417839-61417858 | MS.gene20875:CDS | 50.0% | |
| TCTCTACAAGTGGTCCCTTC+TGG | + | chr1.3:61418325-61418344 | None:intergenic | 50.0% | |
| !! | TGGTCTAAAGGCATTGGACC+CGG | - | chr1.3:61418450-61418469 | MS.gene20875:CDS | 50.0% |
| ACGCGTTAGCGAGAATGCTG+AGG | - | chr1.3:61418546-61418565 | MS.gene20875:CDS | 55.0% | |
| CGATCCTTTCCCGGCTTACA+CGG | - | chr1.3:61418486-61418505 | MS.gene20875:CDS | 55.0% | |
| CGTGTAAGCCGGGAAAGGAT+CGG | + | chr1.3:61418488-61418507 | None:intergenic | 55.0% | |
| TCAACCGTGTAAGCCGGGAA+AGG | + | chr1.3:61418493-61418512 | None:intergenic | 55.0% | |
| TCAGCATTCTCGCTAACGCG+TGG | + | chr1.3:61418547-61418566 | None:intergenic | 55.0% | |
| TTTCCTCGCCGATCCTTTCC+CGG | - | chr1.3:61418477-61418496 | MS.gene20875:CDS | 55.0% | |
| AAGCCGGGAAAGGATCGGCG+AGG | + | chr1.3:61418483-61418502 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61417000 | 61418732 | 61417000 | ID=MS.gene20875 |
| chr1.3 | mRNA | 61417000 | 61418732 | 61417000 | ID=MS.gene20875.t1;Parent=MS.gene20875 |
| chr1.3 | exon | 61418349 | 61418732 | 61418349 | ID=MS.gene20875.t1.exon1;Parent=MS.gene20875.t1 |
| chr1.3 | CDS | 61418349 | 61418732 | 61418349 | ID=cds.MS.gene20875.t1;Parent=MS.gene20875.t1 |
| chr1.3 | exon | 61417000 | 61417905 | 61417000 | ID=MS.gene20875.t1.exon2;Parent=MS.gene20875.t1 |
| chr1.3 | CDS | 61417000 | 61417905 | 61417000 | ID=cds.MS.gene20875.t1;Parent=MS.gene20875.t1 |
| Gene Sequence |
| Protein sequence |
