Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005496.t1 | XP_003591372.1 | 98.1 | 429 | 8 | 0 | 1 | 429 | 114 | 542 | 2.70E-240 | 840.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005496.t1 | Q9FZ22 | 56.5 | 430 | 170 | 8 | 1 | 416 | 101 | 527 | 9.9e-135 | 481.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005496.t1 | G7ICV2 | 98.1 | 429 | 8 | 0 | 1 | 429 | 114 | 542 | 1.9e-240 | 840.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005496 | MS.gene017126 | PPI |
| MS.gene005496 | MS.gene030054 | PPI |
| MS.gene005496 | MS.gene038357 | PPI |
| MS.gene005496 | MS.gene062354 | PPI |
| MS.gene005496 | MS.gene69575 | PPI |
| MS.gene005496 | MS.gene019248 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005496.t1 | MTR_1g086650 | 98.135 | 429 | 8 | 0 | 1 | 429 | 114 | 542 | 0.0 | 876 |
| MS.gene005496.t1 | MTR_5g061520 | 50.235 | 426 | 203 | 5 | 1 | 422 | 67 | 487 | 2.10e-145 | 423 |
| MS.gene005496.t1 | MTR_5g091660 | 48.956 | 431 | 203 | 8 | 1 | 423 | 115 | 536 | 1.66e-134 | 397 |
| MS.gene005496.t1 | MTR_3g448430 | 47.991 | 423 | 200 | 8 | 3 | 416 | 100 | 511 | 2.06e-125 | 373 |
| MS.gene005496.t1 | MTR_4g415290 | 42.891 | 422 | 228 | 7 | 1 | 416 | 75 | 489 | 2.64e-107 | 326 |
| MS.gene005496.t1 | MTR_1g040500 | 41.898 | 432 | 229 | 10 | 2 | 421 | 75 | 496 | 7.26e-107 | 327 |
| MS.gene005496.t1 | MTR_7g067380 | 43.560 | 427 | 225 | 9 | 1 | 420 | 78 | 495 | 1.78e-105 | 321 |
| MS.gene005496.t1 | MTR_3g048330 | 54.610 | 282 | 118 | 4 | 144 | 420 | 1 | 277 | 3.03e-103 | 308 |
| MS.gene005496.t1 | MTR_8g030620 | 41.274 | 424 | 234 | 7 | 1 | 416 | 81 | 497 | 1.51e-102 | 314 |
| MS.gene005496.t1 | MTR_5g080360 | 41.647 | 425 | 231 | 11 | 1 | 416 | 56 | 472 | 8.65e-101 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005496.t1 | AT1G02390 | 56.744 | 430 | 169 | 8 | 1 | 416 | 101 | 527 | 6.36e-168 | 482 |
| MS.gene005496.t1 | AT4G01950 | 55.164 | 426 | 178 | 7 | 1 | 416 | 95 | 517 | 3.57e-164 | 472 |
| MS.gene005496.t1 | AT4G01950 | 55.164 | 426 | 178 | 7 | 1 | 416 | 123 | 545 | 1.44e-163 | 471 |
| MS.gene005496.t1 | AT1G06520 | 47.775 | 427 | 206 | 9 | 3 | 416 | 162 | 584 | 4.92e-124 | 372 |
| MS.gene005496.t1 | AT3G11430 | 41.259 | 429 | 225 | 9 | 2 | 416 | 66 | 481 | 5.70e-106 | 323 |
| MS.gene005496.t1 | AT2G38110 | 42.488 | 426 | 226 | 8 | 1 | 416 | 78 | 494 | 1.11e-102 | 314 |
| MS.gene005496.t1 | AT5G06090 | 41.589 | 428 | 225 | 13 | 2 | 416 | 64 | 479 | 1.06e-100 | 309 |
| MS.gene005496.t1 | AT4G00400 | 40.323 | 434 | 238 | 10 | 1 | 423 | 76 | 499 | 4.14e-98 | 303 |
| MS.gene005496.t1 | AT1G01610 | 40.046 | 432 | 229 | 10 | 1 | 416 | 76 | 493 | 3.40e-95 | 295 |
| MS.gene005496.t1 | AT3G11325 | 39.925 | 268 | 123 | 4 | 150 | 416 | 142 | 372 | 2.27e-59 | 199 |
| MS.gene005496.t1 | AT3G11325 | 39.925 | 268 | 123 | 4 | 150 | 416 | 139 | 369 | 2.34e-59 | 199 |
Find 91 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGAAAATAAGTGATTT+TGG | 0.111061 | 1.1:+64334904 | None:intergenic |
| GACCGTGACCATTGGATTTA+TGG | 0.144323 | 1.1:+64334701 | None:intergenic |
| ACATCTTCCAAGAAGAATTT+TGG | 0.212114 | 1.1:+64335658 | None:intergenic |
| GTAGAGAACCTTATTTATTA+AGG | 0.241243 | 1.1:-64334456 | MS.gene005496:CDS |
| AACATTGCTAAGGACTTTAA+TGG | 0.243494 | 1.1:+64334856 | None:intergenic |
| ACTTTAATGGAGTTGGTGTT+AGG | 0.279488 | 1.1:+64334869 | None:intergenic |
| AGTTCTGCCAAAATTCTTCT+TGG | 0.295056 | 1.1:-64335665 | MS.gene005496:CDS |
| ACTCCGTTATTAACATTTAG+TGG | 0.297118 | 1.1:-64334757 | MS.gene005496:CDS |
| GGGCTAAACCTTAATAAATA+AGG | 0.309796 | 1.1:+64334448 | None:intergenic |
| TCTCTACAAGTGGTCCCTTC+TGG | 0.310793 | 1.1:+64334472 | None:intergenic |
| TGGTTACTATGTTGGGTTGA+TGG | 0.314893 | 1.1:-64335494 | MS.gene005496:CDS |
| AAAGCAGAAAACTTTAGAAT+TGG | 0.326140 | 1.1:-64335694 | MS.gene005496:CDS |
| TTTCCTCGCCGATCCTTTCC+CGG | 0.335386 | 1.1:-64334317 | MS.gene005496:CDS |
| ACCGTGACCATTGGATTTAT+GGG | 0.366623 | 1.1:+64334702 | None:intergenic |
| GCGGAGATTGGTAACACTTT+GGG | 0.373212 | 1.1:-64334193 | MS.gene005496:CDS |
| TACCAATCTCCGCTTGGATA+TGG | 0.373360 | 1.1:+64334203 | None:intergenic |
| TAGTAATTTACCTCGTGTTA+TGG | 0.390567 | 1.1:-64335584 | MS.gene005496:CDS |
| GAAAATGGGGTTGAATATAA+TGG | 0.396766 | 1.1:-64335740 | None:intergenic |
| GTGGGTCTAATAAGGTTCTA+TGG | 0.412472 | 1.1:+64334662 | None:intergenic |
| TGCTGGTAGAGAGCTGAAAA+TGG | 0.415660 | 1.1:-64335521 | MS.gene005496:CDS |
| TGGTTTGTGGTTACTATGTT+GGG | 0.432444 | 1.1:-64335501 | MS.gene005496:CDS |
| CTTTAATGGAGTTGGTGTTA+GGG | 0.435089 | 1.1:+64334870 | None:intergenic |
| AAAGGCTCTTTAGATATGAT+TGG | 0.442495 | 1.1:-64335427 | MS.gene005496:CDS |
| GCTAAGGACTTTAATGGAGT+TGG | 0.443363 | 1.1:+64334862 | None:intergenic |
| ATGGTTTGTGGTTACTATGT+TGG | 0.443488 | 1.1:-64335502 | MS.gene005496:CDS |
| GAAATTGTGAAGGACGAACT+TGG | 0.444462 | 1.1:+64334272 | None:intergenic |
| AATGTAGAGTGGGTCTAATA+AGG | 0.445586 | 1.1:+64334654 | None:intergenic |
| TTGATGCTAGCTGGTAATGA+AGG | 0.447543 | 1.1:-64334133 | MS.gene005496:CDS |
| TGCAAGTGTGATTCTAATAA+CGG | 0.459105 | 1.1:+64334804 | None:intergenic |
| AACCATATCCAAGCGGAGAT+TGG | 0.459393 | 1.1:-64334205 | MS.gene005496:CDS |
| AGCGGAGATTGGTAACACTT+TGG | 0.468303 | 1.1:-64334194 | MS.gene005496:CDS |
| AAATTCTTCTTGGAAGATGT+TGG | 0.491109 | 1.1:-64335655 | MS.gene005496:CDS |
| TGCTAGTGGTCTAAAGGCAT+TGG | 0.493274 | 1.1:-64334350 | MS.gene005496:CDS |
| GCGAGAATGCTGAGGAATGT+AGG | 0.496088 | 1.1:-64334240 | MS.gene005496:CDS |
| GATAAGTATTTGATGCTAGC+TGG | 0.498355 | 1.1:-64334142 | MS.gene005496:CDS |
| AGTAACTCAACCGTGTAAGC+CGG | 0.512367 | 1.1:+64334298 | None:intergenic |
| CACACATTTCAGAAAACAAA+GGG | 0.516657 | 1.1:+64334428 | None:intergenic |
| GTAACTCAACCGTGTAAGCC+GGG | 0.517316 | 1.1:+64334299 | None:intergenic |
| ACGTGTGTATCAACAGCAAC+TGG | 0.520127 | 1.1:+64334394 | None:intergenic |
| AATAATAGCACCAATTAAAA+CGG | 0.524973 | 1.1:-64334572 | MS.gene005496:CDS |
| TTGAGTGTACTAAGCTTACA+AGG | 0.526540 | 1.1:-64334168 | MS.gene005496:CDS |
| TACAACTGCTAGTGGTCTAA+AGG | 0.529525 | 1.1:-64334356 | MS.gene005496:CDS |
| CGATCCTTTCCCGGCTTACA+CGG | 0.534252 | 1.1:-64334308 | MS.gene005496:CDS |
| GATGTAGTTGTGTGTCCAGA+AGG | 0.535316 | 1.1:-64334487 | MS.gene005496:CDS |
| TGATGCTAGCTGGTAATGAA+GGG | 0.536177 | 1.1:-64334132 | MS.gene005496:CDS |
| CACAAGGTGACAAGAGAGGT+TGG | 0.537297 | 1.1:-64334951 | MS.gene005496:CDS |
| CGGGAATTGATGATGTGAGA+CGG | 0.539136 | 1.1:+64334731 | None:intergenic |
| TGGTCTAAAGGCATTGGACC+CGG | 0.543424 | 1.1:-64334344 | MS.gene005496:CDS |
| GCTTTGAAACAAGTTCATGA+AGG | 0.545053 | 1.1:-64335451 | MS.gene005496:CDS |
| CAATCAAGGTGGGAAGAAAG+TGG | 0.547282 | 1.1:-64335611 | MS.gene005496:CDS |
| AAACAAGTTCATGAAGGGAA+AGG | 0.550915 | 1.1:-64335445 | MS.gene005496:CDS |
| GTAAAGATGACCGTGACCAT+TGG | 0.557285 | 1.1:+64334693 | None:intergenic |
| AGTCCACTAAATGTTAATAA+CGG | 0.558530 | 1.1:+64334754 | None:intergenic |
| ACGGAAAGGATTATTCCGTA+TGG | 0.559562 | 1.1:+64334823 | None:intergenic |
| AGTCCTTAGCAATGTTAATG+TGG | 0.560405 | 1.1:-64334849 | MS.gene005496:CDS |
| CTTTGAAACAAGTTCATGAA+GGG | 0.561165 | 1.1:-64335450 | MS.gene005496:CDS |
| TAATTTACCTCGTGTTATGG+TGG | 0.564495 | 1.1:-64335581 | MS.gene005496:CDS |
| ATGTTAATGTGGCTTCCATA+CGG | 0.564900 | 1.1:-64334838 | MS.gene005496:CDS |
| AGAGAGCTGAAAATGGTTTG+TGG | 0.566065 | 1.1:-64335514 | MS.gene005496:CDS |
| TCACACATTTCAGAAAACAA+AGG | 0.572407 | 1.1:+64334427 | None:intergenic |
| TAAATAAGGTTCTCTACAAG+TGG | 0.581152 | 1.1:+64334462 | None:intergenic |
| CGTGTAAGCCGGGAAAGGAT+CGG | 0.581422 | 1.1:+64334309 | None:intergenic |
| TTGAGGTGATCAATCAAGGT+GGG | 0.582634 | 1.1:-64335621 | MS.gene005496:CDS |
| AAATTGTGAAGGACGAACTT+GGG | 0.587318 | 1.1:+64334273 | None:intergenic |
| GCCCATAAATCCAATGGTCA+CGG | 0.591886 | 1.1:-64334703 | MS.gene005496:CDS |
| GAAAATGCCCATAAATCCAA+TGG | 0.599428 | 1.1:-64334709 | MS.gene005496:CDS |
| AATGAGAATGAAATGTAGAG+TGG | 0.600880 | 1.1:+64334643 | None:intergenic |
| TTAGGGCTAGTCTTCCATCA+TGG | 0.606968 | 1.1:+64334887 | None:intergenic |
| ATGAAAACGTTGTTACAACA+AGG | 0.607933 | 1.1:-64334511 | MS.gene005496:CDS |
| AAGTGTTACCAATCTCCGCT+TGG | 0.611648 | 1.1:+64334197 | None:intergenic |
| GAAAACGTTGTTACAACAAG+GGG | 0.612525 | 1.1:-64334509 | MS.gene005496:CDS |
| TCAACCGTGTAAGCCGGGAA+AGG | 0.614668 | 1.1:+64334304 | None:intergenic |
| GAAGTCTATGCTGTCTCACA+AGG | 0.616778 | 1.1:-64334967 | MS.gene005496:CDS |
| ATTACACAAGAAATTAATTG+CGG | 0.617882 | 1.1:-64334623 | MS.gene005496:CDS |
| TCAGCATTCTCGCTAACGCG+TGG | 0.619138 | 1.1:+64334250 | None:intergenic |
| GTGTGATTCTAATAACGGAA+AGG | 0.623067 | 1.1:+64334809 | None:intergenic |
| ACGCGTTAGCGAGAATGCTG+AGG | 0.629609 | 1.1:-64334248 | MS.gene005496:CDS |
| AAGCCACATTAACATTGCTA+AGG | 0.632191 | 1.1:+64334846 | None:intergenic |
| ATGTAGTTGTGTGTCCAGAA+GGG | 0.632491 | 1.1:-64334486 | MS.gene005496:CDS |
| AATCAAGGTGGGAAGAAAGT+GGG | 0.634730 | 1.1:-64335610 | MS.gene005496:CDS |
| CTAACGCGTGGAAATTGTGA+AGG | 0.640306 | 1.1:+64334262 | None:intergenic |
| TGAAAACGTTGTTACAACAA+GGG | 0.645168 | 1.1:-64334510 | MS.gene005496:CDS |
| ATGAGAATGAAATGTAGAGT+GGG | 0.646114 | 1.1:+64334644 | None:intergenic |
| GTCTCACAAGGTGACAAGAG+AGG | 0.647294 | 1.1:-64334955 | MS.gene005496:CDS |
| GATGCTAGCTGGTAATGAAG+GGG | 0.656969 | 1.1:-64334131 | MS.gene005496:CDS |
| TTTGAGGTGATCAATCAAGG+TGG | 0.663961 | 1.1:-64335622 | MS.gene005496:CDS |
| GGTTATTGTTGACTGTTGCG+TGG | 0.688629 | 1.1:+64334082 | None:intergenic |
| TGAGGAATGTAGGTTTGAAG+TGG | 0.690751 | 1.1:-64334230 | MS.gene005496:CDS |
| AAACTCTCCACCATAACACG+AGG | 0.727837 | 1.1:+64335574 | None:intergenic |
| AAGCCGGGAAAGGATCGGCG+AGG | 0.747967 | 1.1:+64334314 | None:intergenic |
| AGTGGCGAACCATATCCAAG+CGG | 0.769808 | 1.1:-64334212 | MS.gene005496:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTTCTAGATATAT+TGG | - | chr1.1:64334732-64334751 | MS.gene005496:CDS | 10.0% |
| !!! | AATTTCTTTTATAGATATAT+TGG | - | chr1.1:64334792-64334811 | MS.gene005496:CDS | 10.0% |
| !!! | TTTAAAATTAACTAAATAGT+TGG | + | chr1.1:64334687-64334706 | None:intergenic | 10.0% |
| !! | TTGTTGTATTATTTAATTGA+AGG | + | chr1.1:64334759-64334778 | None:intergenic | 15.0% |
| !! | AATAATAGCACCAATTAAAA+CGG | - | chr1.1:64335248-64335267 | MS.gene005496:intron | 20.0% |
| !! | ATTACACAAGAAATTAATTG+CGG | - | chr1.1:64335197-64335216 | MS.gene005496:intron | 20.0% |
| !!! | ATAAGTTGTTTTGTTATATC+AGG | - | chr1.1:64334831-64334850 | MS.gene005496:CDS | 20.0% |
| !!! | CAACTTATTAGTTTAATTCA+AGG | + | chr1.1:64334819-64334838 | None:intergenic | 20.0% |
| ! | AGTCCACTAAATGTTAATAA+CGG | + | chr1.1:64335069-64335088 | None:intergenic | 25.0% |
| ! | CACAAATAGTTAATGTACTA+TGG | + | chr1.1:64334663-64334682 | None:intergenic | 25.0% |
| !! | CATGGAAAATAAGTGATTTT+GGG | + | chr1.1:64334918-64334937 | None:intergenic | 25.0% |
| !! | GTAGAGAACCTTATTTATTA+AGG | - | chr1.1:64335364-64335383 | MS.gene005496:intron | 25.0% |
| !! | TCATGGAAAATAAGTGATTT+TGG | + | chr1.1:64334919-64334938 | None:intergenic | 25.0% |
| !!! | AAAGCAGAAAACTTTAGAAT+TGG | - | chr1.1:64334126-64334145 | MS.gene005496:CDS | 25.0% |
| !!! | AAATCACTTATTTTCCATGA+TGG | - | chr1.1:64334919-64334938 | MS.gene005496:CDS | 25.0% |
| !!! | TTGAAAATTGATTTTGTTGC+TGG | - | chr1.1:64334282-64334301 | MS.gene005496:CDS | 25.0% |
| AAAGGCTCTTTAGATATGAT+TGG | - | chr1.1:64334393-64334412 | MS.gene005496:CDS | 30.0% | |
| AAATTCTTCTTGGAAGATGT+TGG | - | chr1.1:64334165-64334184 | MS.gene005496:CDS | 30.0% | |
| AACATTGCTAAGGACTTTAA+TGG | + | chr1.1:64334967-64334986 | None:intergenic | 30.0% | |
| AATGAGAATGAAATGTAGAG+TGG | + | chr1.1:64335180-64335199 | None:intergenic | 30.0% | |
| ACTCCGTTATTAACATTTAG+TGG | - | chr1.1:64335063-64335082 | MS.gene005496:intron | 30.0% | |
| ATGAAAACGTTGTTACAACA+AGG | - | chr1.1:64335309-64335328 | MS.gene005496:intron | 30.0% | |
| ATGAGAATGAAATGTAGAGT+GGG | + | chr1.1:64335179-64335198 | None:intergenic | 30.0% | |
| CACACATTTCAGAAAACAAA+GGG | + | chr1.1:64335395-64335414 | None:intergenic | 30.0% | |
| GGGCTAAACCTTAATAAATA+AGG | + | chr1.1:64335375-64335394 | None:intergenic | 30.0% | |
| TAAATAAGGTTCTCTACAAG+TGG | + | chr1.1:64335361-64335380 | None:intergenic | 30.0% | |
| TAGTAATTTACCTCGTGTTA+TGG | - | chr1.1:64334236-64334255 | MS.gene005496:CDS | 30.0% | |
| TCACACATTTCAGAAAACAA+AGG | + | chr1.1:64335396-64335415 | None:intergenic | 30.0% | |
| TGAAAACGTTGTTACAACAA+GGG | - | chr1.1:64335310-64335329 | MS.gene005496:intron | 30.0% | |
| TGCAAGTGTGATTCTAATAA+CGG | + | chr1.1:64335019-64335038 | None:intergenic | 30.0% | |
| ! | ACATCTTCCAAGAAGAATTT+TGG | + | chr1.1:64334165-64334184 | None:intergenic | 30.0% |
| ! | ATTGGATTTATGGGCATTTT+CGG | + | chr1.1:64335112-64335131 | None:intergenic | 30.0% |
| ! | TGAAATTTTCTCTTCTTGCA+AGG | - | chr1.1:64334446-64334465 | MS.gene005496:CDS | 30.0% |
| !! | CTTTGAAACAAGTTCATGAA+GGG | - | chr1.1:64334370-64334389 | MS.gene005496:CDS | 30.0% |
| !!! | ATGGTCATGATATGCTTTTT+TGG | - | chr1.1:64334099-64334118 | MS.gene005496:CDS | 30.0% |
| !!! | ATTTTTGAGGTGATCAATCA+AGG | - | chr1.1:64334195-64334214 | MS.gene005496:CDS | 30.0% |
| !!! | TGTTGGTTCAGAAATTTTTG+AGG | - | chr1.1:64334182-64334201 | MS.gene005496:CDS | 30.0% |
| AAACAAGTTCATGAAGGGAA+AGG | - | chr1.1:64334375-64334394 | MS.gene005496:CDS | 35.0% | |
| AAATTGTGAAGGACGAACTT+GGG | + | chr1.1:64335550-64335569 | None:intergenic | 35.0% | |
| AAGCCACATTAACATTGCTA+AGG | + | chr1.1:64334977-64334996 | None:intergenic | 35.0% | |
| AATGTAGAGTGGGTCTAATA+AGG | + | chr1.1:64335169-64335188 | None:intergenic | 35.0% | |
| AGTCCTTAGCAATGTTAATG+TGG | - | chr1.1:64334971-64334990 | MS.gene005496:intron | 35.0% | |
| AGTTCTGCCAAAATTCTTCT+TGG | - | chr1.1:64334155-64334174 | MS.gene005496:CDS | 35.0% | |
| ATGTTAATGTGGCTTCCATA+CGG | - | chr1.1:64334982-64335001 | MS.gene005496:intron | 35.0% | |
| GAAAACGTTGTTACAACAAG+GGG | - | chr1.1:64335311-64335330 | MS.gene005496:intron | 35.0% | |
| GAAAATGCCCATAAATCCAA+TGG | - | chr1.1:64335111-64335130 | MS.gene005496:intron | 35.0% | |
| GATAAGTATTTGATGCTAGC+TGG | - | chr1.1:64335678-64335697 | MS.gene005496:CDS | 35.0% | |
| TAATTTACCTCGTGTTATGG+TGG | - | chr1.1:64334239-64334258 | MS.gene005496:CDS | 35.0% | |
| TAGTTAATGTACTATGGTCG+AGG | + | chr1.1:64334657-64334676 | None:intergenic | 35.0% | |
| TTGAGTGTACTAAGCTTACA+AGG | - | chr1.1:64335652-64335671 | MS.gene005496:CDS | 35.0% | |
| ! | AACGGAGTTGAGATTTTGAA+TGG | + | chr1.1:64335051-64335070 | None:intergenic | 35.0% |
| ! | ATGGTTTGTGGTTACTATGT+TGG | - | chr1.1:64334318-64334337 | MS.gene005496:CDS | 35.0% |
| ! | GTGTGATTCTAATAACGGAA+AGG | + | chr1.1:64335014-64335033 | None:intergenic | 35.0% |
| ! | TGGTTTGTGGTTACTATGTT+GGG | - | chr1.1:64334319-64334338 | MS.gene005496:CDS | 35.0% |
| ! | TTGGATTTATGGGCATTTTC+GGG | + | chr1.1:64335111-64335130 | None:intergenic | 35.0% |
| ! | TTTTATGGTACAACTGCTAG+TGG | - | chr1.1:64335456-64335475 | MS.gene005496:CDS | 35.0% |
| !! | ACTTTAATGGAGTTGGTGTT+AGG | + | chr1.1:64334954-64334973 | None:intergenic | 35.0% |
| !! | CTTTAATGGAGTTGGTGTTA+GGG | + | chr1.1:64334953-64334972 | None:intergenic | 35.0% |
| !! | GCTTTGAAACAAGTTCATGA+AGG | - | chr1.1:64334369-64334388 | MS.gene005496:CDS | 35.0% |
| AATCAAGGTGGGAAGAAAGT+GGG | - | chr1.1:64334210-64334229 | MS.gene005496:CDS | 40.0% | |
| ACCGTGACCATTGGATTTAT+GGG | + | chr1.1:64335121-64335140 | None:intergenic | 40.0% | |
| ACGGAAAGGATTATTCCGTA+TGG | + | chr1.1:64335000-64335019 | None:intergenic | 40.0% | |
| AGAGAGCTGAAAATGGTTTG+TGG | - | chr1.1:64334306-64334325 | MS.gene005496:CDS | 40.0% | |
| ATGTAGTTGTGTGTCCAGAA+GGG | - | chr1.1:64335334-64335353 | MS.gene005496:intron | 40.0% | |
| GAAATTGTGAAGGACGAACT+TGG | + | chr1.1:64335551-64335570 | None:intergenic | 40.0% | |
| GCTAAGGACTTTAATGGAGT+TGG | + | chr1.1:64334961-64334980 | None:intergenic | 40.0% | |
| GGTCGAGGAAAAATGTTTGA+CGG | + | chr1.1:64334642-64334661 | None:intergenic | 40.0% | |
| GTGGGTCTAATAAGGTTCTA+TGG | + | chr1.1:64335161-64335180 | None:intergenic | 40.0% | |
| TACAACTGCTAGTGGTCTAA+AGG | - | chr1.1:64335464-64335483 | MS.gene005496:CDS | 40.0% | |
| TGAGGAATGTAGGTTTGAAG+TGG | - | chr1.1:64335590-64335609 | MS.gene005496:CDS | 40.0% | |
| TTGAGGTGATCAATCAAGGT+GGG | - | chr1.1:64334199-64334218 | MS.gene005496:CDS | 40.0% | |
| ! | AAGGGGTAGTTTTCAACAGA+AGG | - | chr1.1:64335706-64335725 | MS.gene005496:CDS | 40.0% |
| ! | ACACACGTCAGCATGTTTTA+TGG | - | chr1.1:64335441-64335460 | MS.gene005496:CDS | 40.0% |
| ! | TGATGCTAGCTGGTAATGAA+GGG | - | chr1.1:64335688-64335707 | MS.gene005496:CDS | 40.0% |
| ! | TTGATGCTAGCTGGTAATGA+AGG | - | chr1.1:64335687-64335706 | MS.gene005496:CDS | 40.0% |
| ! | TTTGAGGTGATCAATCAAGG+TGG | - | chr1.1:64334198-64334217 | MS.gene005496:CDS | 40.0% |
| !! | GACAAACGCACCGTTTTAAT+TGG | + | chr1.1:64335261-64335280 | None:intergenic | 40.0% |
| !! | TGGTTACTATGTTGGGTTGA+TGG | - | chr1.1:64334326-64334345 | MS.gene005496:CDS | 40.0% |
| AAACTCTCCACCATAACACG+AGG | + | chr1.1:64334249-64334268 | None:intergenic | 45.0% | |
| AACCATATCCAAGCGGAGAT+TGG | - | chr1.1:64335615-64335634 | MS.gene005496:CDS | 45.0% | |
| AAGTGTTACCAATCTCCGCT+TGG | + | chr1.1:64335626-64335645 | None:intergenic | 45.0% | |
| ACGTGTGTATCAACAGCAAC+TGG | + | chr1.1:64335429-64335448 | None:intergenic | 45.0% | |
| AGTAACTCAACCGTGTAAGC+CGG | + | chr1.1:64335525-64335544 | None:intergenic | 45.0% | |
| CAATCAAGGTGGGAAGAAAG+TGG | - | chr1.1:64334209-64334228 | MS.gene005496:CDS | 45.0% | |
| CTAACGCGTGGAAATTGTGA+AGG | + | chr1.1:64335561-64335580 | None:intergenic | 45.0% | |
| GAAGTCTATGCTGTCTCACA+AGG | - | chr1.1:64334853-64334872 | MS.gene005496:CDS | 45.0% | |
| GACCGTGACCATTGGATTTA+TGG | + | chr1.1:64335122-64335141 | None:intergenic | 45.0% | |
| GATGTAGTTGTGTGTCCAGA+AGG | - | chr1.1:64335333-64335352 | MS.gene005496:intron | 45.0% | |
| GCCCATAAATCCAATGGTCA+CGG | - | chr1.1:64335117-64335136 | MS.gene005496:intron | 45.0% | |
| GTAAAGATGACCGTGACCAT+TGG | + | chr1.1:64335130-64335149 | None:intergenic | 45.0% | |
| TACCAATCTCCGCTTGGATA+TGG | + | chr1.1:64335620-64335639 | None:intergenic | 45.0% | |
| TGCTGGTAGAGAGCTGAAAA+TGG | - | chr1.1:64334299-64334318 | MS.gene005496:CDS | 45.0% | |
| ! | AGCGGAGATTGGTAACACTT+TGG | - | chr1.1:64335626-64335645 | MS.gene005496:CDS | 45.0% |
| ! | GATGCTAGCTGGTAATGAAG+GGG | - | chr1.1:64335689-64335708 | MS.gene005496:CDS | 45.0% |
| ! | GCGGAGATTGGTAACACTTT+GGG | - | chr1.1:64335627-64335646 | MS.gene005496:CDS | 45.0% |
| ! | TGCTAGTGGTCTAAAGGCAT+TGG | - | chr1.1:64335470-64335489 | MS.gene005496:CDS | 45.0% |
| !! | CGGGAATTGATGATGTGAGA+CGG | + | chr1.1:64335092-64335111 | None:intergenic | 45.0% |
| !! | TTAGGGCTAGTCTTCCATCA+TGG | + | chr1.1:64334936-64334955 | None:intergenic | 45.0% |
| AGTGGCGAACCATATCCAAG+CGG | - | chr1.1:64335608-64335627 | MS.gene005496:CDS | 50.0% | |
| CACAAGGTGACAAGAGAGGT+TGG | - | chr1.1:64334869-64334888 | MS.gene005496:CDS | 50.0% | |
| GATCGGCGAGGAAAAAAACC+GGG | + | chr1.1:64335497-64335516 | None:intergenic | 50.0% | |
| GCGAGAATGCTGAGGAATGT+AGG | - | chr1.1:64335580-64335599 | MS.gene005496:CDS | 50.0% | |
| GGATCGGCGAGGAAAAAAAC+CGG | + | chr1.1:64335498-64335517 | None:intergenic | 50.0% | |
| GTAACTCAACCGTGTAAGCC+GGG | + | chr1.1:64335524-64335543 | None:intergenic | 50.0% | |
| GTCTCACAAGGTGACAAGAG+AGG | - | chr1.1:64334865-64334884 | MS.gene005496:CDS | 50.0% | |
| TCTCTACAAGTGGTCCCTTC+TGG | + | chr1.1:64335351-64335370 | None:intergenic | 50.0% | |
| !! | TGGTCTAAAGGCATTGGACC+CGG | - | chr1.1:64335476-64335495 | MS.gene005496:CDS | 50.0% |
| ACGCGTTAGCGAGAATGCTG+AGG | - | chr1.1:64335572-64335591 | MS.gene005496:CDS | 55.0% | |
| CGATCCTTTCCCGGCTTACA+CGG | - | chr1.1:64335512-64335531 | MS.gene005496:CDS | 55.0% | |
| CGTGTAAGCCGGGAAAGGAT+CGG | + | chr1.1:64335514-64335533 | None:intergenic | 55.0% | |
| TCAACCGTGTAAGCCGGGAA+AGG | + | chr1.1:64335519-64335538 | None:intergenic | 55.0% | |
| TCAGCATTCTCGCTAACGCG+TGG | + | chr1.1:64335573-64335592 | None:intergenic | 55.0% | |
| TTTCCTCGCCGATCCTTTCC+CGG | - | chr1.1:64335503-64335522 | MS.gene005496:CDS | 55.0% | |
| AAGCCGGGAAAGGATCGGCG+AGG | + | chr1.1:64335509-64335528 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 64334084 | 64335758 | 64334084 | ID=MS.gene005496 |
| chr1.1 | mRNA | 64334084 | 64335758 | 64334084 | ID=MS.gene005496.t1;Parent=MS.gene005496 |
| chr1.1 | exon | 64335375 | 64335758 | 64335375 | ID=MS.gene005496.t1.exon1;Parent=MS.gene005496.t1 |
| chr1.1 | CDS | 64335375 | 64335758 | 64335375 | ID=cds.MS.gene005496.t1;Parent=MS.gene005496.t1 |
| chr1.1 | exon | 64334084 | 64334989 | 64334084 | ID=MS.gene005496.t1.exon2;Parent=MS.gene005496.t1 |
| chr1.1 | CDS | 64334084 | 64334989 | 64334084 | ID=cds.MS.gene005496.t1;Parent=MS.gene005496.t1 |
| Gene Sequence |
| Protein sequence |
