Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07326.t1 | XP_003591372.1 | 98.1 | 429 | 8 | 0 | 1 | 429 | 114 | 542 | 1.60E-240 | 841.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07326.t1 | Q9FZ22 | 56.7 | 430 | 169 | 8 | 1 | 416 | 101 | 527 | 2.6e-135 | 483.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07326.t1 | G7ICV2 | 98.1 | 429 | 8 | 0 | 1 | 429 | 114 | 542 | 1.1e-240 | 841.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07326 | MS.gene019248 | PPI |
| MS.gene07326 | MS.gene030054 | PPI |
| MS.gene07326 | MS.gene017126 | PPI |
| MS.gene07326 | MS.gene038357 | PPI |
| MS.gene07326 | MS.gene062354 | PPI |
| MS.gene07326 | MS.gene69575 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07326.t1 | MTR_1g086650 | 98.135 | 429 | 8 | 0 | 1 | 429 | 114 | 542 | 0.0 | 878 |
| MS.gene07326.t1 | MTR_5g061520 | 50.469 | 426 | 202 | 6 | 1 | 422 | 67 | 487 | 3.58e-145 | 422 |
| MS.gene07326.t1 | MTR_5g091660 | 49.184 | 429 | 205 | 8 | 1 | 423 | 115 | 536 | 4.49e-136 | 401 |
| MS.gene07326.t1 | MTR_3g448430 | 47.754 | 423 | 201 | 8 | 3 | 416 | 100 | 511 | 5.30e-126 | 374 |
| MS.gene07326.t1 | MTR_4g415290 | 43.128 | 422 | 227 | 7 | 1 | 416 | 75 | 489 | 2.83e-108 | 328 |
| MS.gene07326.t1 | MTR_1g040500 | 41.589 | 428 | 236 | 7 | 2 | 421 | 75 | 496 | 1.17e-107 | 329 |
| MS.gene07326.t1 | MTR_7g067380 | 43.326 | 427 | 226 | 9 | 1 | 420 | 78 | 495 | 1.41e-105 | 322 |
| MS.gene07326.t1 | MTR_8g030620 | 41.745 | 424 | 232 | 7 | 1 | 416 | 81 | 497 | 1.41e-103 | 317 |
| MS.gene07326.t1 | MTR_3g048330 | 54.255 | 282 | 119 | 4 | 144 | 420 | 1 | 277 | 1.00e-102 | 306 |
| MS.gene07326.t1 | MTR_5g080360 | 41.589 | 428 | 227 | 11 | 1 | 416 | 56 | 472 | 5.33e-101 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07326.t1 | AT1G02390 | 56.977 | 430 | 168 | 8 | 1 | 416 | 101 | 527 | 4.91e-169 | 485 |
| MS.gene07326.t1 | AT4G01950 | 55.164 | 426 | 178 | 7 | 1 | 416 | 95 | 517 | 1.29e-163 | 471 |
| MS.gene07326.t1 | AT4G01950 | 55.164 | 426 | 178 | 7 | 1 | 416 | 123 | 545 | 5.26e-163 | 470 |
| MS.gene07326.t1 | AT1G06520 | 47.897 | 428 | 204 | 10 | 3 | 416 | 162 | 584 | 1.47e-124 | 373 |
| MS.gene07326.t1 | AT3G11430 | 41.725 | 429 | 223 | 9 | 2 | 416 | 66 | 481 | 6.37e-107 | 325 |
| MS.gene07326.t1 | AT2G38110 | 42.488 | 426 | 226 | 8 | 1 | 416 | 78 | 494 | 1.17e-102 | 314 |
| MS.gene07326.t1 | AT5G06090 | 42.019 | 426 | 224 | 12 | 3 | 416 | 65 | 479 | 6.38e-102 | 312 |
| MS.gene07326.t1 | AT4G00400 | 40.783 | 434 | 236 | 10 | 1 | 423 | 76 | 499 | 2.75e-99 | 305 |
| MS.gene07326.t1 | AT1G01610 | 40.046 | 432 | 229 | 10 | 1 | 416 | 76 | 493 | 4.27e-96 | 297 |
| MS.gene07326.t1 | AT3G11325 | 39.925 | 268 | 123 | 4 | 150 | 416 | 142 | 372 | 2.27e-59 | 199 |
| MS.gene07326.t1 | AT3G11325 | 39.925 | 268 | 123 | 4 | 150 | 416 | 139 | 369 | 2.60e-59 | 199 |
Find 89 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGAAAATAAGTGATTT+TGG | 0.111061 | 1.4:+69112895 | None:intergenic |
| GACCGTGACCATTGGATTTA+TGG | 0.144323 | 1.4:+69112692 | None:intergenic |
| AACATTGCTAATGACTTTAA+TGG | 0.190558 | 1.4:+69112847 | None:intergenic |
| ACATCTTCCAAGAAGAATTT+TGG | 0.212114 | 1.4:+69113622 | None:intergenic |
| GTAGAGAACCTTATTTATTA+AGG | 0.241243 | 1.4:-69112447 | MS.gene07326:CDS |
| AGTTCTGCCAAAATTCTTCT+TGG | 0.295056 | 1.4:-69113629 | MS.gene07326:CDS |
| ACTTTAATGGAGTTGGTGTT+AGG | 0.295074 | 1.4:+69112860 | None:intergenic |
| ACTCCGTTATTAACATTTAG+TGG | 0.297118 | 1.4:-69112748 | MS.gene07326:CDS |
| GGGCTAAACCTTAATAAATA+AGG | 0.309796 | 1.4:+69112439 | None:intergenic |
| TCTCTACAAGTGGTCCCTTC+TGG | 0.310793 | 1.4:+69112463 | None:intergenic |
| TGGTTACTATGTTGGGTTGA+TGG | 0.314893 | 1.4:-69113458 | MS.gene07326:CDS |
| AAAGCAGAAAACTTTAGAAT+TGG | 0.326140 | 1.4:-69113658 | MS.gene07326:CDS |
| TTTCCTCGCCGATCCTTTCC+CGG | 0.335386 | 1.4:-69112308 | MS.gene07326:CDS |
| ACCGTGACCATTGGATTTAT+GGG | 0.366623 | 1.4:+69112693 | None:intergenic |
| GCGGAGATTGGTAACACTTT+GGG | 0.373212 | 1.4:-69112184 | MS.gene07326:CDS |
| TACCAATCTCCGCTTGGATA+TGG | 0.373360 | 1.4:+69112194 | None:intergenic |
| GTGGGTCTAATAAGGTTCTA+TGG | 0.412472 | 1.4:+69112653 | None:intergenic |
| TGCTGGTAGAGAGCTGAAAA+TGG | 0.415660 | 1.4:-69113485 | MS.gene07326:CDS |
| TGGTTTGTGGTTACTATGTT+GGG | 0.432444 | 1.4:-69113465 | MS.gene07326:CDS |
| TAGTAATTTACCTCGTGTTA+TGG | 0.433484 | 1.4:-69113548 | MS.gene07326:CDS |
| CTTTAATGGAGTTGGTGTTA+GGG | 0.440433 | 1.4:+69112861 | None:intergenic |
| AAAGGCTCTTTAGATATGAT+TGG | 0.442495 | 1.4:-69113391 | MS.gene07326:CDS |
| ATGGTTTGTGGTTACTATGT+TGG | 0.443488 | 1.4:-69113466 | MS.gene07326:CDS |
| GAAATTGTGAAGGACGAACT+TGG | 0.444462 | 1.4:+69112263 | None:intergenic |
| AATGTAGAGTGGGTCTAATA+AGG | 0.445586 | 1.4:+69112645 | None:intergenic |
| TTGATGCTAGCTGGTAATGA+AGG | 0.447543 | 1.4:-69112124 | MS.gene07326:CDS |
| TGCAAGTGTGATTCTAATAA+CGG | 0.459105 | 1.4:+69112795 | None:intergenic |
| AACCATATCCAAGCGGAGAT+TGG | 0.459393 | 1.4:-69112196 | MS.gene07326:CDS |
| AGCGGAGATTGGTAACACTT+TGG | 0.468303 | 1.4:-69112185 | MS.gene07326:CDS |
| GCTAATGACTTTAATGGAGT+TGG | 0.480716 | 1.4:+69112853 | None:intergenic |
| AAATTCTTCTTGGAAGATGT+TGG | 0.491109 | 1.4:-69113619 | MS.gene07326:CDS |
| TGCTAGTGGTCTAAAGGCAT+TGG | 0.493274 | 1.4:-69112341 | MS.gene07326:CDS |
| GCGAGAATGCTGAGGAATGT+AGG | 0.496088 | 1.4:-69112231 | MS.gene07326:CDS |
| GATAAGTATTTGATGCTAGC+TGG | 0.498355 | 1.4:-69112133 | MS.gene07326:CDS |
| AGTAACTCAACCGTGTAAGC+CGG | 0.512367 | 1.4:+69112289 | None:intergenic |
| CACACATTTCAGAAAACAAA+GGG | 0.516657 | 1.4:+69112419 | None:intergenic |
| GTAACTCAACCGTGTAAGCC+GGG | 0.517316 | 1.4:+69112290 | None:intergenic |
| ACGTGTGTATCAACAGCAAC+TGG | 0.520127 | 1.4:+69112385 | None:intergenic |
| TTGAGTGTACTAAGCTTACA+AGG | 0.526540 | 1.4:-69112159 | MS.gene07326:CDS |
| GATAATAGCACCAATTAAAA+CGG | 0.528624 | 1.4:-69112563 | MS.gene07326:CDS |
| TACAACTGCTAGTGGTCTAA+AGG | 0.529525 | 1.4:-69112347 | MS.gene07326:CDS |
| CGATCCTTTCCCGGCTTACA+CGG | 0.534252 | 1.4:-69112299 | MS.gene07326:CDS |
| GATGTAGTTGTGTGTCCAGA+AGG | 0.535316 | 1.4:-69112478 | MS.gene07326:CDS |
| TGATGCTAGCTGGTAATGAA+GGG | 0.536177 | 1.4:-69112123 | MS.gene07326:CDS |
| CACAAGGTGACAAGAGAGGT+TGG | 0.537297 | 1.4:-69112942 | MS.gene07326:CDS |
| AGTCATTAGCAATGTTAATG+TGG | 0.538663 | 1.4:-69112840 | MS.gene07326:CDS |
| CGGGAATTGATGATGTGAGA+CGG | 0.539136 | 1.4:+69112722 | None:intergenic |
| TGGTCTAAAGGCATTGGACC+CGG | 0.543424 | 1.4:-69112335 | MS.gene07326:CDS |
| CAATCAAGGTGGGAAGAAAG+TGG | 0.547282 | 1.4:-69113575 | MS.gene07326:CDS |
| AAACAAGTTCATGAAGGGAA+AGG | 0.550915 | 1.4:-69113409 | MS.gene07326:CDS |
| GTAAAGATGACCGTGACCAT+TGG | 0.557285 | 1.4:+69112684 | None:intergenic |
| AGTCCACTAAATGTTAATAA+CGG | 0.558530 | 1.4:+69112745 | None:intergenic |
| ACGGAAAGGATTATTCCGTA+TGG | 0.559562 | 1.4:+69112814 | None:intergenic |
| CTTTGAAACAAGTTCATGAA+GGG | 0.561165 | 1.4:-69113414 | MS.gene07326:CDS |
| GTGACAAGAGAGGTTGGAAA+AGG | 0.563053 | 1.4:-69112936 | MS.gene07326:CDS |
| ATGTTAATGTGGCTTCCATA+CGG | 0.564900 | 1.4:-69112829 | MS.gene07326:CDS |
| AGAGAGCTGAAAATGGTTTG+TGG | 0.566065 | 1.4:-69113478 | MS.gene07326:CDS |
| TCACACATTTCAGAAAACAA+AGG | 0.572407 | 1.4:+69112418 | None:intergenic |
| GCTTTGAAACAAGTTCATGA+AGG | 0.575993 | 1.4:-69113415 | MS.gene07326:CDS |
| TAAATAAGGTTCTCTACAAG+TGG | 0.581152 | 1.4:+69112453 | None:intergenic |
| CGTGTAAGCCGGGAAAGGAT+CGG | 0.581422 | 1.4:+69112300 | None:intergenic |
| TTGAGGTGATCAATCAAGGT+GGG | 0.582634 | 1.4:-69113585 | MS.gene07326:CDS |
| AAATTGTGAAGGACGAACTT+GGG | 0.587318 | 1.4:+69112264 | None:intergenic |
| GCCCATAAATCCAATGGTCA+CGG | 0.591886 | 1.4:-69112694 | MS.gene07326:CDS |
| GAAAATGCCCATAAATCCAA+TGG | 0.599428 | 1.4:-69112700 | MS.gene07326:CDS |
| AATGAGAATGAAATGTAGAG+TGG | 0.600880 | 1.4:+69112634 | None:intergenic |
| TTAGGGCTAGTCTTCCATCA+TGG | 0.606968 | 1.4:+69112878 | None:intergenic |
| ATGAAAACGTTGTTACAACA+AGG | 0.607933 | 1.4:-69112502 | MS.gene07326:CDS |
| AAGTGTTACCAATCTCCGCT+TGG | 0.611648 | 1.4:+69112188 | None:intergenic |
| GAAAACGTTGTTACAACAAG+GGG | 0.612525 | 1.4:-69112500 | MS.gene07326:CDS |
| TCAACCGTGTAAGCCGGGAA+AGG | 0.614668 | 1.4:+69112295 | None:intergenic |
| GAAGTCTATGCTGTCTCACA+AGG | 0.616778 | 1.4:-69112958 | MS.gene07326:CDS |
| ATTACACAAGAAATTAATTG+CGG | 0.617882 | 1.4:-69112614 | MS.gene07326:CDS |
| TCAGCATTCTCGCTAACGCG+TGG | 0.619138 | 1.4:+69112241 | None:intergenic |
| GTGTGATTCTAATAACGGAA+AGG | 0.623067 | 1.4:+69112800 | None:intergenic |
| ACGCGTTAGCGAGAATGCTG+AGG | 0.629609 | 1.4:-69112239 | MS.gene07326:CDS |
| ATGTAGTTGTGTGTCCAGAA+GGG | 0.632491 | 1.4:-69112477 | MS.gene07326:CDS |
| AATCAAGGTGGGAAGAAAGT+GGG | 0.634730 | 1.4:-69113574 | MS.gene07326:CDS |
| CTAACGCGTGGAAATTGTGA+AGG | 0.640306 | 1.4:+69112253 | None:intergenic |
| TGAAAACGTTGTTACAACAA+GGG | 0.645168 | 1.4:-69112501 | MS.gene07326:CDS |
| ATGAGAATGAAATGTAGAGT+GGG | 0.646114 | 1.4:+69112635 | None:intergenic |
| GTCTCACAAGGTGACAAGAG+AGG | 0.647294 | 1.4:-69112946 | MS.gene07326:CDS |
| GATGCTAGCTGGTAATGAAG+GGG | 0.656969 | 1.4:-69112122 | MS.gene07326:CDS |
| TTTGAGGTGATCAATCAAGG+TGG | 0.663961 | 1.4:-69113586 | MS.gene07326:CDS |
| GGTTATTGTTGACTGTTGCG+TGG | 0.688629 | 1.4:+69112073 | None:intergenic |
| TGAGGAATGTAGGTTTGAAG+TGG | 0.690751 | 1.4:-69112221 | MS.gene07326:CDS |
| AAACTCTCTACCATAACACG+AGG | 0.708861 | 1.4:+69113538 | None:intergenic |
| AAGCCGGGAAAGGATCGGCG+AGG | 0.747967 | 1.4:+69112305 | None:intergenic |
| AGTGGCGAACCATATCCAAG+CGG | 0.769808 | 1.4:-69112203 | MS.gene07326:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTAACTAAATAGT+TGG | + | chr1.4:69112644-69112663 | None:intergenic | 10.0% |
| !!! | AATTTATTTTCTAGATATAT+TGG | - | chr1.4:69112695-69112714 | MS.gene07326:CDS | 10.0% |
| !!! | AATTTCTTTTATAGATATAT+TGG | - | chr1.4:69112756-69112775 | MS.gene07326:CDS | 10.0% |
| !!! | TGTTGTATTATTTTAATTGA+AGG | + | chr1.4:69112722-69112741 | None:intergenic | 15.0% |
| !! | ATTACACAAGAAATTAATTG+CGG | - | chr1.4:69113161-69113180 | MS.gene07326:intron | 20.0% |
| !!! | ATAAGTTGTTTTGTTATATC+AGG | - | chr1.4:69112795-69112814 | MS.gene07326:CDS | 20.0% |
| !!! | CAACTTATTAGTTTAATTCA+AGG | + | chr1.4:69112783-69112802 | None:intergenic | 20.0% |
| ! | AACATTGCTAATGACTTTAA+TGG | + | chr1.4:69112931-69112950 | None:intergenic | 25.0% |
| ! | AGTCCACTAAATGTTAATAA+CGG | + | chr1.4:69113033-69113052 | None:intergenic | 25.0% |
| ! | CACAAATTGTTAATGTACTA+TGG | + | chr1.4:69112620-69112639 | None:intergenic | 25.0% |
| ! | GATAATAGCACCAATTAAAA+CGG | - | chr1.4:69113212-69113231 | MS.gene07326:intron | 25.0% |
| !! | CATGGAAAATAAGTGATTTT+GGG | + | chr1.4:69112882-69112901 | None:intergenic | 25.0% |
| !! | GTAGAGAACCTTATTTATTA+AGG | - | chr1.4:69113328-69113347 | MS.gene07326:intron | 25.0% |
| !! | TCATGGAAAATAAGTGATTT+TGG | + | chr1.4:69112883-69112902 | None:intergenic | 25.0% |
| !!! | AAAGCAGAAAACTTTAGAAT+TGG | - | chr1.4:69112117-69112136 | MS.gene07326:CDS | 25.0% |
| !!! | AAATCACTTATTTTCCATGA+TGG | - | chr1.4:69112883-69112902 | MS.gene07326:CDS | 25.0% |
| !!! | TTGAAAATTGATTTTGTTGC+TGG | - | chr1.4:69112273-69112292 | MS.gene07326:CDS | 25.0% |
| AAAGGCTCTTTAGATATGAT+TGG | - | chr1.4:69112384-69112403 | MS.gene07326:CDS | 30.0% | |
| AAATTCTTCTTGGAAGATGT+TGG | - | chr1.4:69112156-69112175 | MS.gene07326:CDS | 30.0% | |
| AATGAGAATGAAATGTAGAG+TGG | + | chr1.4:69113144-69113163 | None:intergenic | 30.0% | |
| ACTCCGTTATTAACATTTAG+TGG | - | chr1.4:69113027-69113046 | MS.gene07326:intron | 30.0% | |
| AGTCATTAGCAATGTTAATG+TGG | - | chr1.4:69112935-69112954 | MS.gene07326:CDS | 30.0% | |
| ATGAAAACGTTGTTACAACA+AGG | - | chr1.4:69113273-69113292 | MS.gene07326:intron | 30.0% | |
| ATGAGAATGAAATGTAGAGT+GGG | + | chr1.4:69113143-69113162 | None:intergenic | 30.0% | |
| CACACATTTCAGAAAACAAA+GGG | + | chr1.4:69113359-69113378 | None:intergenic | 30.0% | |
| GGGCTAAACCTTAATAAATA+AGG | + | chr1.4:69113339-69113358 | None:intergenic | 30.0% | |
| TAAATAAGGTTCTCTACAAG+TGG | + | chr1.4:69113325-69113344 | None:intergenic | 30.0% | |
| TAGTAATTTACCTCGTGTTA+TGG | - | chr1.4:69112227-69112246 | MS.gene07326:CDS | 30.0% | |
| TCACACATTTCAGAAAACAA+AGG | + | chr1.4:69113360-69113379 | None:intergenic | 30.0% | |
| TGAAAACGTTGTTACAACAA+GGG | - | chr1.4:69113274-69113293 | MS.gene07326:intron | 30.0% | |
| TGCAAGTGTGATTCTAATAA+CGG | + | chr1.4:69112983-69113002 | None:intergenic | 30.0% | |
| ! | ACATCTTCCAAGAAGAATTT+TGG | + | chr1.4:69112156-69112175 | None:intergenic | 30.0% |
| ! | ATTGGATTTATGGGCATTTT+CGG | + | chr1.4:69113076-69113095 | None:intergenic | 30.0% |
| ! | TGAAATTTTCTCTTCTTGCA+AGG | - | chr1.4:69112437-69112456 | MS.gene07326:CDS | 30.0% |
| !! | CTTTGAAACAAGTTCATGAA+GGG | - | chr1.4:69112361-69112380 | MS.gene07326:CDS | 30.0% |
| !!! | ATGGTCATGATATCCTTTTT+TGG | - | chr1.4:69112090-69112109 | MS.gene07326:CDS | 30.0% |
| !!! | ATTTTTGAGGTGATCAATCA+AGG | - | chr1.4:69112186-69112205 | MS.gene07326:CDS | 30.0% |
| !!! | TGTTGGTTCAGAAATTTTTG+AGG | - | chr1.4:69112173-69112192 | MS.gene07326:CDS | 30.0% |
| AAACAAGTTCATGAAGGGAA+AGG | - | chr1.4:69112366-69112385 | MS.gene07326:CDS | 35.0% | |
| AAATTGTGAAGGACGAACTT+GGG | + | chr1.4:69113514-69113533 | None:intergenic | 35.0% | |
| AATGTAGAGTGGGTCTAATA+AGG | + | chr1.4:69113133-69113152 | None:intergenic | 35.0% | |
| AGTTCTGCCAAAATTCTTCT+TGG | - | chr1.4:69112146-69112165 | MS.gene07326:CDS | 35.0% | |
| ATGTTAATGTGGCTTCCATA+CGG | - | chr1.4:69112946-69112965 | MS.gene07326:CDS | 35.0% | |
| GAAAACGTTGTTACAACAAG+GGG | - | chr1.4:69113275-69113294 | MS.gene07326:intron | 35.0% | |
| GAAAATGCCCATAAATCCAA+TGG | - | chr1.4:69113075-69113094 | MS.gene07326:intron | 35.0% | |
| GATAAGTATTTGATGCTAGC+TGG | - | chr1.4:69113642-69113661 | MS.gene07326:CDS | 35.0% | |
| GCTAATGACTTTAATGGAGT+TGG | + | chr1.4:69112925-69112944 | None:intergenic | 35.0% | |
| TTGAGTGTACTAAGCTTACA+AGG | - | chr1.4:69113616-69113635 | MS.gene07326:CDS | 35.0% | |
| TTGTTAATGTACTATGGTCG+AGG | + | chr1.4:69112614-69112633 | None:intergenic | 35.0% | |
| ! | AACGGAGTTGAGATTTTGAA+TGG | + | chr1.4:69113015-69113034 | None:intergenic | 35.0% |
| ! | ATGGTTTGTGGTTACTATGT+TGG | - | chr1.4:69112309-69112328 | MS.gene07326:CDS | 35.0% |
| ! | GTGTGATTCTAATAACGGAA+AGG | + | chr1.4:69112978-69112997 | None:intergenic | 35.0% |
| ! | TGGTTTGTGGTTACTATGTT+GGG | - | chr1.4:69112310-69112329 | MS.gene07326:CDS | 35.0% |
| ! | TTGGATTTATGGGCATTTTC+GGG | + | chr1.4:69113075-69113094 | None:intergenic | 35.0% |
| ! | TTTTATGGTACAACTGCTAG+TGG | - | chr1.4:69113420-69113439 | MS.gene07326:CDS | 35.0% |
| !! | ACTTTAATGGAGTTGGTGTT+AGG | + | chr1.4:69112918-69112937 | None:intergenic | 35.0% |
| !! | CTTTAATGGAGTTGGTGTTA+GGG | + | chr1.4:69112917-69112936 | None:intergenic | 35.0% |
| !! | GCTTTGAAACAAGTTCATGA+AGG | - | chr1.4:69112360-69112379 | MS.gene07326:CDS | 35.0% |
| !! | TTCTGCTTTGAGACCAAAAA+AGG | + | chr1.4:69112106-69112125 | None:intergenic | 35.0% |
| AAACTCTCTACCATAACACG+AGG | + | chr1.4:69112240-69112259 | None:intergenic | 40.0% | |
| AATCAAGGTGGGAAGAAAGT+GGG | - | chr1.4:69112201-69112220 | MS.gene07326:CDS | 40.0% | |
| ACCGTGACCATTGGATTTAT+GGG | + | chr1.4:69113085-69113104 | None:intergenic | 40.0% | |
| ACGGAAAGGATTATTCCGTA+TGG | + | chr1.4:69112964-69112983 | None:intergenic | 40.0% | |
| AGAGAGCTGAAAATGGTTTG+TGG | - | chr1.4:69112297-69112316 | MS.gene07326:CDS | 40.0% | |
| ATGTAGTTGTGTGTCCAGAA+GGG | - | chr1.4:69113298-69113317 | MS.gene07326:intron | 40.0% | |
| GAAATTGTGAAGGACGAACT+TGG | + | chr1.4:69113515-69113534 | None:intergenic | 40.0% | |
| GTGGGTCTAATAAGGTTCTA+TGG | + | chr1.4:69113125-69113144 | None:intergenic | 40.0% | |
| TACAACTGCTAGTGGTCTAA+AGG | - | chr1.4:69113428-69113447 | MS.gene07326:CDS | 40.0% | |
| TGAGGAATGTAGGTTTGAAG+TGG | - | chr1.4:69113554-69113573 | MS.gene07326:CDS | 40.0% | |
| TTGAGGTGATCAATCAAGGT+GGG | - | chr1.4:69112190-69112209 | MS.gene07326:CDS | 40.0% | |
| ! | AAGGGGTAGTTTTCAACAGA+AGG | - | chr1.4:69113670-69113689 | MS.gene07326:CDS | 40.0% |
| ! | ACACACGTCAGCATGTTTTA+TGG | - | chr1.4:69113405-69113424 | MS.gene07326:CDS | 40.0% |
| ! | TGATGCTAGCTGGTAATGAA+GGG | - | chr1.4:69113652-69113671 | MS.gene07326:CDS | 40.0% |
| ! | TTGATGCTAGCTGGTAATGA+AGG | - | chr1.4:69113651-69113670 | MS.gene07326:CDS | 40.0% |
| ! | TTTGAGGTGATCAATCAAGG+TGG | - | chr1.4:69112189-69112208 | MS.gene07326:CDS | 40.0% |
| !! | GACAAACGCACCGTTTTAAT+TGG | + | chr1.4:69113225-69113244 | None:intergenic | 40.0% |
| !! | TGGTTACTATGTTGGGTTGA+TGG | - | chr1.4:69112317-69112336 | MS.gene07326:CDS | 40.0% |
| AACCATATCCAAGCGGAGAT+TGG | - | chr1.4:69113579-69113598 | MS.gene07326:CDS | 45.0% | |
| AAGTGTTACCAATCTCCGCT+TGG | + | chr1.4:69113590-69113609 | None:intergenic | 45.0% | |
| ACGTGTGTATCAACAGCAAC+TGG | + | chr1.4:69113393-69113412 | None:intergenic | 45.0% | |
| AGTAACTCAACCGTGTAAGC+CGG | + | chr1.4:69113489-69113508 | None:intergenic | 45.0% | |
| CAATCAAGGTGGGAAGAAAG+TGG | - | chr1.4:69112200-69112219 | MS.gene07326:CDS | 45.0% | |
| CTAACGCGTGGAAATTGTGA+AGG | + | chr1.4:69113525-69113544 | None:intergenic | 45.0% | |
| GAAGTCTATGCTGTCTCACA+AGG | - | chr1.4:69112817-69112836 | MS.gene07326:CDS | 45.0% | |
| GACCGTGACCATTGGATTTA+TGG | + | chr1.4:69113086-69113105 | None:intergenic | 45.0% | |
| GATGTAGTTGTGTGTCCAGA+AGG | - | chr1.4:69113297-69113316 | MS.gene07326:intron | 45.0% | |
| GCCCATAAATCCAATGGTCA+CGG | - | chr1.4:69113081-69113100 | MS.gene07326:intron | 45.0% | |
| GTAAAGATGACCGTGACCAT+TGG | + | chr1.4:69113094-69113113 | None:intergenic | 45.0% | |
| GTGACAAGAGAGGTTGGAAA+AGG | - | chr1.4:69112839-69112858 | MS.gene07326:CDS | 45.0% | |
| TACCAATCTCCGCTTGGATA+TGG | + | chr1.4:69113584-69113603 | None:intergenic | 45.0% | |
| TGCTGGTAGAGAGCTGAAAA+TGG | - | chr1.4:69112290-69112309 | MS.gene07326:CDS | 45.0% | |
| ! | AGCGGAGATTGGTAACACTT+TGG | - | chr1.4:69113590-69113609 | MS.gene07326:CDS | 45.0% |
| ! | GATGCTAGCTGGTAATGAAG+GGG | - | chr1.4:69113653-69113672 | MS.gene07326:CDS | 45.0% |
| ! | GCGGAGATTGGTAACACTTT+GGG | - | chr1.4:69113591-69113610 | MS.gene07326:CDS | 45.0% |
| ! | TGCTAGTGGTCTAAAGGCAT+TGG | - | chr1.4:69113434-69113453 | MS.gene07326:CDS | 45.0% |
| !! | CGGGAATTGATGATGTGAGA+CGG | + | chr1.4:69113056-69113075 | None:intergenic | 45.0% |
| !! | TTAGGGCTAGTCTTCCATCA+TGG | + | chr1.4:69112900-69112919 | None:intergenic | 45.0% |
| AGTGGCGAACCATATCCAAG+CGG | - | chr1.4:69113572-69113591 | MS.gene07326:CDS | 50.0% | |
| CACAAGGTGACAAGAGAGGT+TGG | - | chr1.4:69112833-69112852 | MS.gene07326:CDS | 50.0% | |
| GATCGGCGAGGAAAAAAACC+GGG | + | chr1.4:69113461-69113480 | None:intergenic | 50.0% | |
| GCGAGAATGCTGAGGAATGT+AGG | - | chr1.4:69113544-69113563 | MS.gene07326:CDS | 50.0% | |
| GGATCGGCGAGGAAAAAAAC+CGG | + | chr1.4:69113462-69113481 | None:intergenic | 50.0% | |
| GTAACTCAACCGTGTAAGCC+GGG | + | chr1.4:69113488-69113507 | None:intergenic | 50.0% | |
| GTCTCACAAGGTGACAAGAG+AGG | - | chr1.4:69112829-69112848 | MS.gene07326:CDS | 50.0% | |
| TCTCTACAAGTGGTCCCTTC+TGG | + | chr1.4:69113315-69113334 | None:intergenic | 50.0% | |
| !! | TGGTCTAAAGGCATTGGACC+CGG | - | chr1.4:69113440-69113459 | MS.gene07326:CDS | 50.0% |
| ACGCGTTAGCGAGAATGCTG+AGG | - | chr1.4:69113536-69113555 | MS.gene07326:CDS | 55.0% | |
| CGATCCTTTCCCGGCTTACA+CGG | - | chr1.4:69113476-69113495 | MS.gene07326:CDS | 55.0% | |
| CGTGTAAGCCGGGAAAGGAT+CGG | + | chr1.4:69113478-69113497 | None:intergenic | 55.0% | |
| TCAACCGTGTAAGCCGGGAA+AGG | + | chr1.4:69113483-69113502 | None:intergenic | 55.0% | |
| TCAGCATTCTCGCTAACGCG+TGG | + | chr1.4:69113537-69113556 | None:intergenic | 55.0% | |
| TTTCCTCGCCGATCCTTTCC+CGG | - | chr1.4:69113467-69113486 | MS.gene07326:CDS | 55.0% | |
| AAGCCGGGAAAGGATCGGCG+AGG | + | chr1.4:69113473-69113492 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69112075 | 69113722 | 69112075 | ID=MS.gene07326 |
| chr1.4 | mRNA | 69112075 | 69113722 | 69112075 | ID=MS.gene07326.t1;Parent=MS.gene07326 |
| chr1.4 | exon | 69113339 | 69113722 | 69113339 | ID=MS.gene07326.t1.exon1;Parent=MS.gene07326.t1 |
| chr1.4 | CDS | 69113339 | 69113722 | 69113339 | ID=cds.MS.gene07326.t1;Parent=MS.gene07326.t1 |
| chr1.4 | exon | 69112075 | 69112980 | 69112075 | ID=MS.gene07326.t1.exon2;Parent=MS.gene07326.t1 |
| chr1.4 | CDS | 69112075 | 69112980 | 69112075 | ID=cds.MS.gene07326.t1;Parent=MS.gene07326.t1 |
| Gene Sequence |
| Protein sequence |
