AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01949

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01949.t1 MTR_2g027130 96.747 584 16 1 1 581 1 584 0.0 1096
MS.gene01949.t1 MTR_4g134110 58.319 571 213 7 11 578 2 550 0.0 546
MS.gene01949.t1 MTR_3g060660 42.832 565 311 7 8 565 11 570 3.19e-105 331
MS.gene01949.t1 MTR_3g060660 42.389 519 292 4 51 565 44 559 3.26e-92 296
MS.gene01949.t1 MTR_5g096080 38.272 567 337 7 9 565 12 575 1.24e-88 288
MS.gene01949.t1 MTR_3g007920 38.977 567 333 7 9 565 12 575 1.24e-88 288
MS.gene01949.t1 MTR_4g133450 52.038 319 141 4 262 578 6 314 2.77e-76 245
MS.gene01949.t1 MTR_3g101660 29.038 613 353 16 1 562 270 851 1.57e-31 130
MS.gene01949.t1 MTR_1g019490 26.622 601 365 17 14 563 259 834 2.30e-25 111
MS.gene01949.t1 MTR_8g070840 27.907 559 350 15 22 565 27 547 5.03e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01949.t1 AT1G12150 44.643 560 279 8 11 563 8 543 1.19e-125 380
MS.gene01949.t1 AT1G12150 44.643 560 279 8 11 563 8 543 1.19e-125 380
MS.gene01949.t1 AT5G55860 41.725 568 316 6 6 565 8 568 2.03e-85 279
MS.gene01949.t1 AT4G17210 33.865 564 314 7 10 563 12 526 7.50e-67 226
MS.gene01949.t1 AT2G26570 26.678 611 379 15 8 575 153 737 1.03e-28 122
MS.gene01949.t1 AT2G26570 26.678 611 379 15 8 575 153 737 1.03e-28 122
MS.gene01949.t1 AT4G33390 28.014 589 378 14 8 561 138 715 4.90e-24 107
MS.gene01949.t1 AT5G42880 25.628 597 361 17 6 565 115 665 4.61e-13 72.8
MS.gene01949.t1 AT1G45545 24.660 588 355 18 8 562 143 675 8.84e-13 71.6
MS.gene01949.t1 AT1G45545 24.660 588 355 18 8 562 142 674 9.89e-13 71.6

Find 81 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTTGAGGTAATAAATT+TGG 0.122498 2.2:-60059162 MS.gene01949:CDS
TTCTTCTCTTGATGCTTTCA+TGG 0.211121 2.2:+60059421 None:intergenic
CAATTCTTGAAGTGTTATAT+TGG 0.291401 2.2:+60059775 None:intergenic
TGAAACAAGTGCTGAAATTC+AGG 0.294476 2.2:-60059228 MS.gene01949:CDS
TCGAGACTTTGTGTTTCTTC+AGG 0.296287 2.2:+60059263 None:intergenic
TTGTTCTAATTCTGTCTTAA+GGG 0.320296 2.2:+60059067 None:intergenic
TGCCGCTTTGGAGGCGAAAT+TGG 0.336907 2.2:-60059528 MS.gene01949:CDS
CAATCTGTCAAGGCCGCTAT+TGG 0.337386 2.2:-60060485 MS.gene01949:CDS
TTGGAGAACTATCTCTGTTT+CGG 0.342248 2.2:+60060561 None:intergenic
GCGCTATCACAGAAAGCAAT+AGG 0.362984 2.2:-60059662 MS.gene01949:CDS
TTGGTGAAGTTCGTGTCAAC+CGG 0.365739 2.2:-60060457 MS.gene01949:CDS
CAAAGAAAAGGAAGATTCTA+TGG 0.384617 2.2:-60058958 MS.gene01949:CDS
CTTGTTCTAATTCTGTCTTA+AGG 0.396313 2.2:+60059066 None:intergenic
ACTGGAGAATCTGTCTCCTT+TGG 0.400995 2.2:+60060542 None:intergenic
TATTTCTTCAGACAAAGCTT+TGG 0.407479 2.2:+60058794 None:intergenic
TGAGAGTCATTGTCAAGAAA+TGG 0.411564 2.2:-60058919 MS.gene01949:CDS
AAGGCCGCTATTGGTTTGTT+TGG 0.418653 2.2:-60060476 MS.gene01949:CDS
GAAAGAACAAGCGGAACTTA+AGG 0.429619 2.2:-60059039 MS.gene01949:CDS
CAGCAACAGATCTGGCTTTG+AGG 0.433288 2.2:-60058467 MS.gene01949:CDS
TGGCGTCAAGAAGAACAAAA+AGG 0.451952 2.2:-60058390 MS.gene01949:CDS
AGCGCTTATTGAGCTTGATA+AGG 0.461267 2.2:-60059798 MS.gene01949:CDS
AGAAATAGATAATAAATTGA+TGG 0.464169 2.2:-60059306 MS.gene01949:CDS
AATAAAAGCAGCAACAGATC+TGG 0.466708 2.2:-60058475 MS.gene01949:CDS
TGATAGAATTATTTCTATCC+CGG 0.469818 2.2:+60060438 None:intergenic
TACCTTGTAGTTCGCCGGTT+AGG 0.471965 2.2:+60058982 None:intergenic
AGAGATGAGAATGAAAGCTC+AGG 0.473161 2.2:-60058841 MS.gene01949:CDS
GTGTGATATGCAGAATGTAT+TGG 0.475004 2.2:-60059906 MS.gene01949:intron
CGCTATCACAGAAAGCAATA+GGG 0.479520 2.2:-60059661 MS.gene01949:CDS
AAGCAATAGGGTATGAAGCT+TGG 0.480603 2.2:-60059649 MS.gene01949:CDS
TCAATCTCCCTCTCTCCCAC+TGG 0.484697 2.2:+60060524 None:intergenic
AAAGGAGACTCAGCTTCTCT+TGG 0.484746 2.2:-60059882 MS.gene01949:CDS
TATGCAGAATGTATTGGAAA+AGG 0.485982 2.2:-60059900 MS.gene01949:intron
GGCAGGAGAAGCTCAGCGTT+CGG 0.487792 2.2:-60059492 MS.gene01949:CDS
GCTCTTGCTGCAAACCTAAC+CGG 0.490559 2.2:-60058996 MS.gene01949:CDS
AGAACTAGAACATGCAAGAA+AGG 0.501099 2.2:-60059621 MS.gene01949:CDS
TTCTAGCTCTGCAGCGAGAT+CGG 0.503421 2.2:+60058339 None:intergenic
AGAAGAACAGATTAAAGTGA+TGG 0.504683 2.2:-60059372 MS.gene01949:CDS
AGATTCTCCAGTGGGAGAGA+GGG 0.507692 2.2:-60060531 MS.gene01949:CDS
TTGGCTGCATTTCAGATGGC+AGG 0.508839 2.2:-60059509 MS.gene01949:CDS
TCAGCAAAACTAGCAGTTGA+AGG 0.511221 2.2:-60058426 MS.gene01949:CDS
ACTACAAGGTAGCAAAGAAA+AGG 0.511736 2.2:-60058970 MS.gene01949:CDS
CAGATTCTCCAGTGGGAGAG+AGG 0.514331 2.2:-60060532 MS.gene01949:CDS
TGTTAATACAATCTTACCAC+TGG 0.519770 2.2:+60058653 None:intergenic
TTTGCTACCTTGTAGTTCGC+CGG 0.522771 2.2:+60058977 None:intergenic
AGAAACAACTGCAATGGCTC+AGG 0.523434 2.2:-60058568 MS.gene01949:CDS
GATGAATTTGCTGCTCTAAG+TGG 0.529272 2.2:-60058627 MS.gene01949:CDS
AAAGATCAATGAACTTTCAA+AGG 0.534366 2.2:-60059453 MS.gene01949:CDS
GGCTTTGAGGAATGCAGAGA+TGG 0.535386 2.2:-60058454 MS.gene01949:CDS
TCAAGCCAAAGAACTCGAAA+AGG 0.537588 2.2:-60059684 MS.gene01949:CDS
GCTTTGTCTGAAGAAATAGA+AGG 0.539516 2.2:-60058789 MS.gene01949:CDS
GAAGAACAGATTAAAGTGAT+GGG 0.541347 2.2:-60059371 MS.gene01949:CDS
AGAGTTTCGTGAGTCTCAGA+TGG 0.544957 2.2:-60059186 MS.gene01949:CDS
AACAACTGCAATGGCTCAGG+TGG 0.549356 2.2:-60058565 MS.gene01949:CDS
CTTACCACTGGAATCAGAAA+CGG 0.549822 2.2:+60058665 None:intergenic
GCGGCCTTGACAGATTGAAA+TGG 0.550977 2.2:+60060491 None:intergenic
GAAATTGGCTGCATTTCAGA+TGG 0.565691 2.2:-60059513 MS.gene01949:CDS
AGAATCAAAGCAATCTGCAA+TGG 0.566703 2.2:-60059729 MS.gene01949:CDS
CTGTCTTAAGGGAATCCACA+AGG 0.567845 2.2:+60059078 None:intergenic
AGCTTCACTGAGAAACCTTG+TGG 0.568186 2.2:-60059093 MS.gene01949:CDS
AACCTAACCGGCGAACTACA+AGG 0.573065 2.2:-60058984 MS.gene01949:CDS
TGGTGAAGTTCGTGTCAACC+GGG 0.573487 2.2:-60060456 MS.gene01949:CDS
AATGTGAAGATTTGATTGAG+AGG 0.600637 2.2:-60058593 MS.gene01949:CDS
GTCTCAGATGGATTCTGTTG+AGG 0.601961 2.2:-60059174 MS.gene01949:CDS
ATCTGCAATGGAAGAAAGTG+AGG 0.605339 2.2:-60059717 MS.gene01949:CDS
AGCACCATTTCAATCTGTCA+AGG 0.617899 2.2:-60060495 MS.gene01949:CDS
ACAAGCGGAACTTAAGGAGA+AGG 0.622994 2.2:-60059033 MS.gene01949:CDS
ACAAGTGAAGAAAGAACAAG+CGG 0.623018 2.2:-60059048 MS.gene01949:CDS
CAAGCAGTTATCATTCGAGA+CGG 0.628969 2.2:-60058886 MS.gene01949:CDS
GCGTTCGGCGAAATTGAACT+CGG 0.630622 2.2:-60059477 MS.gene01949:CDS
AAGGAGACAGATTCTCCAGT+GGG 0.630732 2.2:-60060539 MS.gene01949:CDS
TATCAAGAGAAGATCTTCAG+AGG 0.632667 2.2:-60060420 MS.gene01949:intron
AAACAGAGATAGTTCTCCAA+AGG 0.633433 2.2:-60060558 MS.gene01949:CDS
GAGGACAGAAACAACTGCAA+TGG 0.637220 2.2:-60058574 MS.gene01949:CDS
GTCTCCGTTTCTGATTCCAG+TGG 0.639257 2.2:-60058669 MS.gene01949:CDS
TTGAAGGTGAATTAAAGAAG+TGG 0.644395 2.2:-60058410 MS.gene01949:CDS
TAAGGAGAAGGAACAAGCAG+CGG 0.645739 2.2:-60059021 MS.gene01949:CDS
TTCACCAAACAAACCAATAG+CGG 0.647180 2.2:+60060472 None:intergenic
AGCCAATTTCGCCTCCAAAG+CGG 0.663081 2.2:+60059526 None:intergenic
TGAAGAAACACAAAGTCTCG+AGG 0.675914 2.2:-60059261 MS.gene01949:CDS
AAAGGAGACAGATTCTCCAG+TGG 0.701967 2.2:-60060540 MS.gene01949:CDS
AAGTTGTTGTCTGACGCACA+AGG 0.705883 2.2:-60058696 MS.gene01949:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATAGATAATAAATTGA+TGG - chr2.2:60059604-60059623 MS.gene01949:CDS 15.0%
!! ATTTGTAATATTAAGGATTC+CGG + chr2.2:60058597-60058616 None:intergenic 20.0%
!! CATGGTTATTTGTAATATTA+AGG + chr2.2:60058604-60058623 None:intergenic 20.0%
!! CTTAATATTACAAATAACCA+TGG - chr2.2:60058602-60058621 MS.gene01949:CDS 20.0%
!!! AAACTTTTACAAAACTTCAA+AGG - chr2.2:60059580-60059599 MS.gene01949:CDS 20.0%
! AAAGATCAATGAACTTTCAA+AGG - chr2.2:60059457-60059476 MS.gene01949:CDS 25.0%
! AGCGATTATTTGCAATATTA+AGG + chr2.2:60058535-60058554 None:intergenic 25.0%
! ATTTGCAATATTAAGGATAG+CGG + chr2.2:60058528-60058547 None:intergenic 25.0%
! TTAATATTGCAAATAATCGC+TGG - chr2.2:60058534-60058553 MS.gene01949:CDS 25.0%
! TTATTCGCAAAATTTAACCA+TGG + chr2.2:60058622-60058641 None:intergenic 25.0%
! TTCTGTTGAGGTAATAAATT+TGG - chr2.2:60059748-60059767 MS.gene01949:CDS 25.0%
! TTGTTCTAATTCTGTCTTAA+GGG + chr2.2:60059846-60059865 None:intergenic 25.0%
!! AATAGCAGTTTGTTCAAATT+CGG - chr2.2:60058842-60058861 MS.gene01949:CDS 25.0%
!! CAATTCTTGAAGTGTTATAT+TGG + chr2.2:60059138-60059157 None:intergenic 25.0%
!!! TGATAGAATTATTTCTATCC+CGG + chr2.2:60058475-60058494 None:intergenic 25.0%
AATGTGAAGATTTGATTGAG+AGG - chr2.2:60060317-60060336 MS.gene01949:intron 30.0%
ACAAAAAGGTTTGGATTTGT+CGG - chr2.2:60060534-60060553 MS.gene01949:CDS 30.0%
AGAAGAACAGATTAAAGTGA+TGG - chr2.2:60059538-60059557 MS.gene01949:CDS 30.0%
CAAAGAAAAGGAAGATTCTA+TGG - chr2.2:60059952-60059971 MS.gene01949:intron 30.0%
CTTGTTCTAATTCTGTCTTA+AGG + chr2.2:60059847-60059866 None:intergenic 30.0%
GAAGAACAGATTAAAGTGAT+GGG - chr2.2:60059539-60059558 MS.gene01949:CDS 30.0%
TACAATATAGCACTATAGCA+TGG + chr2.2:60058868-60058887 None:intergenic 30.0%
TATGCAGAATGTATTGGAAA+AGG - chr2.2:60059010-60059029 MS.gene01949:CDS 30.0%
TATTTATGAGTTATGCGTCA+AGG - chr2.2:60058970-60058989 MS.gene01949:CDS 30.0%
TATTTCTTCAGACAAAGCTT+TGG + chr2.2:60060119-60060138 None:intergenic 30.0%
TCAAGAAGAACAAAAAGGTT+TGG - chr2.2:60060525-60060544 MS.gene01949:CDS 30.0%
TGTTAATACAATCTTACCAC+TGG + chr2.2:60060260-60060279 None:intergenic 30.0%
TTGAAGGTGAATTAAAGAAG+TGG - chr2.2:60060500-60060519 MS.gene01949:CDS 30.0%
! GATTTTGTTAAGCTCTTGTT+TGG + chr2.2:60059348-60059367 None:intergenic 30.0%
!!! AACTCCTTTTTTTTTGTACC+AGG - chr2.2:60058558-60058577 MS.gene01949:CDS 30.0%
AAACAGAGATAGTTCTCCAA+AGG - chr2.2:60058352-60058371 MS.gene01949:CDS 35.0%
AATAAAAGCAGCAACAGATC+TGG - chr2.2:60060435-60060454 MS.gene01949:CDS 35.0%
ACAAGTGAAGAAAGAACAAG+CGG - chr2.2:60059862-60059881 MS.gene01949:CDS 35.0%
ACTACAAGGTAGCAAAGAAA+AGG - chr2.2:60059940-60059959 MS.gene01949:intron 35.0%
AGAACTAGAACATGCAAGAA+AGG - chr2.2:60059289-60059308 MS.gene01949:CDS 35.0%
AGAATCAAAGCAATCTGCAA+TGG - chr2.2:60059181-60059200 MS.gene01949:CDS 35.0%
AGATGAAAAAAGAGCTGTTG+AGG - chr2.2:60060186-60060205 MS.gene01949:intron 35.0%
ATCTTCAGAGGTAAACATCA+CGG - chr2.2:60058502-60058521 MS.gene01949:CDS 35.0%
GCTTCCTGGTACAAAAAAAA+AGG + chr2.2:60058565-60058584 None:intergenic 35.0%
GCTTTGTCTGAAGAAATAGA+AGG - chr2.2:60060121-60060140 MS.gene01949:intron 35.0%
GTGTGATATGCAGAATGTAT+TGG - chr2.2:60059004-60059023 MS.gene01949:CDS 35.0%
TATCAAGAGAAGATCTTCAG+AGG - chr2.2:60058490-60058509 MS.gene01949:CDS 35.0%
TATTGCACAACAATAGCGAT+TGG - chr2.2:60058886-60058905 MS.gene01949:CDS 35.0%
TGAGAGTCATTGTCAAGAAA+TGG - chr2.2:60059991-60060010 MS.gene01949:intron 35.0%
TTCACCAAACAAACCAATAG+CGG + chr2.2:60058441-60058460 None:intergenic 35.0%
TTCTTCTCTTGATGCTTTCA+TGG + chr2.2:60059492-60059511 None:intergenic 35.0%
TTGGAGAACTATCTCTGTTT+CGG + chr2.2:60058352-60058371 None:intergenic 35.0%
! TTTTGACGTCTATGCGATTA+AGG + chr2.2:60058661-60058680 None:intergenic 35.0%
!! TGAAACAAGTGCTGAAATTC+AGG - chr2.2:60059682-60059701 MS.gene01949:CDS 35.0%
AAGCAATAGGGTATGAAGCT+TGG - chr2.2:60059261-60059280 MS.gene01949:CDS 40.0%
AAGCATTCAATCTTCGAAGC+AGG + chr2.2:60058740-60058759 None:intergenic 40.0%
AGAGATGAGAATGAAAGCTC+AGG - chr2.2:60060069-60060088 MS.gene01949:intron 40.0%
AGCACCATTTCAATCTGTCA+AGG - chr2.2:60058415-60058434 MS.gene01949:CDS 40.0%
AGCATTCAATCTTCGAAGCA+GGG + chr2.2:60058739-60058758 None:intergenic 40.0%
AGCGCTTATTGAGCTTGATA+AGG - chr2.2:60059112-60059131 MS.gene01949:CDS 40.0%
ATCTGCAATGGAAGAAAGTG+AGG - chr2.2:60059193-60059212 MS.gene01949:CDS 40.0%
CAAGCAGTTATCATTCGAGA+CGG - chr2.2:60060024-60060043 MS.gene01949:intron 40.0%
CGCTATCACAGAAAGCAATA+GGG - chr2.2:60059249-60059268 MS.gene01949:CDS 40.0%
CTTACCACTGGAATCAGAAA+CGG + chr2.2:60060248-60060267 None:intergenic 40.0%
GAAAGAACAAGCGGAACTTA+AGG - chr2.2:60059871-60059890 MS.gene01949:CDS 40.0%
GAAATTGGCTGCATTTCAGA+TGG - chr2.2:60059397-60059416 MS.gene01949:CDS 40.0%
GAAGCAGGGTTATGACAAAA+TGG + chr2.2:60058725-60058744 None:intergenic 40.0%
GATTGAATGCTTGGTTCCAA+AGG - chr2.2:60058748-60058767 MS.gene01949:CDS 40.0%
TCAAGCCAAAGAACTCGAAA+AGG - chr2.2:60059226-60059245 MS.gene01949:CDS 40.0%
TCAGCAAAACTAGCAGTTGA+AGG - chr2.2:60060484-60060503 MS.gene01949:CDS 40.0%
TCGAGACTTTGTGTTTCTTC+AGG + chr2.2:60059650-60059669 None:intergenic 40.0%
TGAAGAAACACAAAGTCTCG+AGG - chr2.2:60059649-60059668 MS.gene01949:CDS 40.0%
TGACTAACTAGCTACCATCT+GGG + chr2.2:60058779-60058798 None:intergenic 40.0%
TGCTTCGAAGATTGAATGCT+TGG - chr2.2:60058739-60058758 MS.gene01949:CDS 40.0%
TGGCGTCAAGAAGAACAAAA+AGG - chr2.2:60060520-60060539 MS.gene01949:CDS 40.0%
!! ACAAGATTTTGATGCCGCTT+TGG - chr2.2:60059370-60059389 MS.gene01949:CDS 40.0%
!! GATGAATTTGCTGCTCTAAG+TGG - chr2.2:60060283-60060302 MS.gene01949:intron 40.0%
!! GGTTCAAGTTTGCGTGATTT+TGG - chr2.2:60058907-60058926 MS.gene01949:CDS 40.0%
AAAGGAGACAGATTCTCCAG+TGG - chr2.2:60058370-60058389 MS.gene01949:CDS 45.0%
AAAGGAGACTCAGCTTCTCT+TGG - chr2.2:60059028-60059047 MS.gene01949:CDS 45.0%
AAGGAGACAGATTCTCCAGT+GGG - chr2.2:60058371-60058390 MS.gene01949:CDS 45.0%
AAGTTGTTGTCTGACGCACA+AGG - chr2.2:60060214-60060233 MS.gene01949:intron 45.0%
ACAAGCGGAACTTAAGGAGA+AGG - chr2.2:60059877-60059896 MS.gene01949:CDS 45.0%
ACTGGAGAATCTGTCTCCTT+TGG + chr2.2:60058371-60058390 None:intergenic 45.0%
AGAAACAACTGCAATGGCTC+AGG - chr2.2:60060342-60060361 MS.gene01949:intron 45.0%
AGAGTTTCGTGAGTCTCAGA+TGG - chr2.2:60059724-60059743 MS.gene01949:CDS 45.0%
AGCTTCACTGAGAAACCTTG+TGG - chr2.2:60059817-60059836 MS.gene01949:CDS 45.0%
CGTCAAAAACCTTGATGTCG+CGG - chr2.2:60058673-60058692 MS.gene01949:CDS 45.0%
CTGTCTTAAGGGAATCCACA+AGG + chr2.2:60059835-60059854 None:intergenic 45.0%
GAGGACAGAAACAACTGCAA+TGG - chr2.2:60060336-60060355 MS.gene01949:intron 45.0%
GCGCTATCACAGAAAGCAAT+AGG - chr2.2:60059248-60059267 MS.gene01949:CDS 45.0%
GTGACTAACTAGCTACCATC+TGG + chr2.2:60058780-60058799 None:intergenic 45.0%
TAAGGAGAAGGAACAAGCAG+CGG - chr2.2:60059889-60059908 MS.gene01949:CDS 45.0%
TTGGTGAAGTTCGTGTCAAC+CGG - chr2.2:60058453-60058472 MS.gene01949:CDS 45.0%
TTGTACCAGGAAGCAGATCA+TGG - chr2.2:60058571-60058590 MS.gene01949:CDS 45.0%
TTTGCTACCTTGTAGTTCGC+CGG + chr2.2:60059936-60059955 None:intergenic 45.0%
! GTCTCAGATGGATTCTGTTG+AGG - chr2.2:60059736-60059755 MS.gene01949:CDS 45.0%
!! AAGGCCGCTATTGGTTTGTT+TGG - chr2.2:60058434-60058453 MS.gene01949:CDS 45.0%
!! CAGTTTTAACCGCGACATCA+AGG + chr2.2:60058685-60058704 None:intergenic 45.0%
!!! AGATTTTGATGCCGCTTTGG+AGG - chr2.2:60059373-60059392 MS.gene01949:CDS 45.0%
!!! TAGCGCCTTTTCGAGTTCTT+TGG + chr2.2:60059234-60059253 None:intergenic 45.0%
AACAACTGCAATGGCTCAGG+TGG - chr2.2:60060345-60060364 MS.gene01949:intron 50.0%
AACCTAACCGGCGAACTACA+AGG - chr2.2:60059926-60059945 MS.gene01949:intron 50.0%
AGATTCTCCAGTGGGAGAGA+GGG - chr2.2:60058379-60058398 MS.gene01949:CDS 50.0%
AGCCAATTTCGCCTCCAAAG+CGG + chr2.2:60059387-60059406 None:intergenic 50.0%
CAATCTGTCAAGGCCGCTAT+TGG - chr2.2:60058425-60058444 MS.gene01949:CDS 50.0%
GCGGCCTTGACAGATTGAAA+TGG + chr2.2:60058422-60058441 None:intergenic 50.0%
GCGTTCGGCGAAATTGAACT+CGG - chr2.2:60059433-60059452 MS.gene01949:CDS 50.0%
GCTCTTGCTGCAAACCTAAC+CGG - chr2.2:60059914-60059933 MS.gene01949:intron 50.0%
GTCTCCGTTTCTGATTCCAG+TGG - chr2.2:60060241-60060260 MS.gene01949:intron 50.0%
TACCATCTGGGTCATGCCTT+TGG + chr2.2:60058767-60058786 None:intergenic 50.0%
TGGTGAAGTTCGTGTCAACC+GGG - chr2.2:60058454-60058473 MS.gene01949:CDS 50.0%
TTGGCTGCATTTCAGATGGC+AGG - chr2.2:60059401-60059420 MS.gene01949:CDS 50.0%
! TACCTTGTAGTTCGCCGGTT+AGG + chr2.2:60059931-60059950 None:intergenic 50.0%
! TTCCAAAGGCATGACCCAGA+TGG - chr2.2:60058762-60058781 MS.gene01949:CDS 50.0%
!! CAGCAACAGATCTGGCTTTG+AGG - chr2.2:60060443-60060462 MS.gene01949:CDS 50.0%
!! GGCTTTGAGGAATGCAGAGA+TGG - chr2.2:60060456-60060475 MS.gene01949:CDS 50.0%
ACCAGGAAGCAGATCATGGC+CGG - chr2.2:60058575-60058594 MS.gene01949:CDS 55.0%
CAGATTCTCCAGTGGGAGAG+AGG - chr2.2:60058378-60058397 MS.gene01949:CDS 55.0%
TCAATCTCCCTCTCTCCCAC+TGG + chr2.2:60058389-60058408 None:intergenic 55.0%
!! TGCCGCTTTGGAGGCGAAAT+TGG - chr2.2:60059382-60059401 MS.gene01949:CDS 55.0%
GGCAGGAGAAGCTCAGCGTT+CGG - chr2.2:60059418-60059437 MS.gene01949:CDS 60.0%
TCCGGCCATGATCTGCTTCC+TGG + chr2.2:60058579-60058598 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 60058341 60060591 60058341 ID=MS.gene01949
chr2.2 mRNA 60058341 60060591 60058341 ID=MS.gene01949.t1;Parent=MS.gene01949
chr2.2 exon 60060421 60060591 60060421 ID=MS.gene01949.t1.exon1;Parent=MS.gene01949.t1
chr2.2 CDS 60060421 60060591 60060421 ID=cds.MS.gene01949.t1;Parent=MS.gene01949.t1
chr2.2 exon 60058341 60059915 60058341 ID=MS.gene01949.t1.exon2;Parent=MS.gene01949.t1
chr2.2 CDS 60058341 60059915 60058341 ID=cds.MS.gene01949.t1;Parent=MS.gene01949.t1
Gene Sequence

>MS.gene01949

ATGAGTTTCCGAAACAGAGATAGTTCTCCAAAGGAGACAGATTCTCCAGTGGGAGAGAGGGAGATTGACACAAGAGCACCATTTCAATCTGTCAAGGCCGCTATTGGTTTGTTTGGTGAAGTTCGTGTCAACCGGGATAGAAATAATTCTATCAAGAGAAGATCTTCAGAGGTAAACATCACGGCCGCTATCCTTAATATTGCAAATAATCGCTGGAAACTCCTTTTTTTTTGTACCAGGAAGCAGATCATGGCCGGAATCCTTAATATTACAAATAACCATGGTTAAATTTTGCGAATAATTGAAGTCAAATGCAGCCTTAATCGCATAGACGTCAAAAACCTTGATGTCGCGGTTAAAACTGCAGTTGCTAGTTGCAGACCATTTTGTCATAACCCTGCTTCGAAGATTGAATGCTTGGTTCCAAAGGCATGACCCAGATGGTAGCTAGTTAGTCACTTACATAATTTTAATCAGTGTTGTCAACTGAGAATCGCAGAAAATAGCAGTTTGTTCAAATTCGGCCATGCTATAGTGCTATATTGTATTGCACAACAATAGCGATTGGTTCAAGTTTGCGTGATTTTGGAATTCAGAAATTTTATCATTTTTCATTGTGTTAGTGTCATTATTTATGAGTTATGCGTCAAGGTCATTAACTTTGTGTGATATGCAGAATGTATTGGAAAAGGAGACTCAGCTTCTCTTGGCTCAAAGAGAACTGAACAAGATAAAGAAAAAGCTTGAAAGTGCTGAGAGTACAAAAGCTAAAGCGCTTATTGAGCTTGATAAGGCCAATATAACACTTCAAGAATTGACAAAGAAACTCAACACTGTGAGAGAATCAAAGCAATCTGCAATGGAAGAAAGTGAGGTTGTGAAGAATCAAGCCAAAGAACTCGAAAAGGCGCTATCACAGAAAGCAATAGGGTATGAAGCTTGGAAACAAGAACTAGAACATGCAAGAAAGGAGTACACTACAACTGTAAAAGAACTAGATGCTTCCAAACAAGAGCTTAACAAAATCAGACAAGATTTTGATGCCGCTTTGGAGGCGAAATTGGCTGCATTTCAGATGGCAGGAGAAGCTCAGCGTTCGGCGAAATTGAACTCGGAAAAGATCAATGAACTTTCAAAGGAAATTGCAACCATGAAAGCATCAAGAGAAGAACTCAAGCTTGCAACTGCACAAGCACAAGAAGAACAGATTAAAGTGATGGGAGAAAGAGAAGAAAAGTTAAACTTTTACAAAACTTCAAAGGAAGAAATAGATAATAAATTGATGGAAGTGAAGAATGAGTATGATCCTGAAGAAACACAAAGTCTCGAGGCGAAACTTGCTGAAACAAGTGCTGAAATTCAGGTTCTTCAAGAGAAGATAAAAGAGTTTCGTGAGTCTCAGATGGATTCTGTTGAGGTAATAAATTTGGAAATCAAAGAAGCAACAAAGACACTGAAAGAAATTTCTGAAGAAGAAGCTTCACTGAGAAACCTTGTGGATTCCCTTAAGACAGAATTAGAACAAGTGAAGAAAGAACAAGCGGAACTTAAGGAGAAGGAACAAGCAGCGGAAGCTCTTGCTGCAAACCTAACCGGCGAACTACAAGGTAGCAAAGAAAAGGAAGATTCTATGGAAAACAAAGAATCTAATGAGAGTCATTGTCAAGAAATGGAGTTGAAAATCAAGCAGTTATCATTCGAGACGGAAAATGCAAGAAAAGAAGAAGAAGAGATGAGAATGAAAGCTCAGGAAATGAAACAAGAAGCTGAGAATTCCAAAGCTTTGTCTGAAGAAATAGAAGGTAAACTAGAGATTTTATTTAAACAAGCTGAAGAAGCAAAAGCAGATGAAAAAAGAGCTGTTGAGGAGATGAAGTTGTTGTCTGACGCACAAGGTAGTGTCTCCGTTTCTGATTCCAGTGGTAAGATTGTATTAACAGTTGATGAATTTGCTGCTCTAAGTGGAAAAATCAATGAATGTGAAGATTTGATTGAGAGGACAGAAACAACTGCAATGGCTCAGGTGGAAGCAATCAACACAAGAAGAAATGAAGTGAACAAAAAAGTCGAAGCTAATCTTCAAGCAATCGAAGAAATAAAAGCAGCAACAGATCTGGCTTTGAGGAATGCAGAGATGGCAGACTCAGCAAAACTAGCAGTTGAAGGTGAATTAAAGAAGTGGCGTCAAGAAGAACAAAAAGGTTTGGATTTGTCGGATAACTCTTCAACACCGATCTCGCTGCAGAGCTAG
Protein sequence

>MS.gene01949.t1

MSFRNRDSSPKETDSPVGEREIDTRAPFQSVKAAIGLFGEVRVNRDRNNSIKRRSSENVLEKETQLLLAQRELNKIKKKLESAESTKAKALIELDKANITLQELTKKLNTVRESKQSAMEESEVVKNQAKELEKALSQKAIGYEAWKQELEHARKEYTTTVKELDASKQELNKIRQDFDAALEAKLAAFQMAGEAQRSAKLNSEKINELSKEIATMKASREELKLATAQAQEEQIKVMGEREEKLNFYKTSKEEIDNKLMEVKNEYDPEETQSLEAKLAETSAEIQVLQEKIKEFRESQMDSVEVINLEIKEATKTLKEISEEEASLRNLVDSLKTELEQVKKEQAELKEKEQAAEALAANLTGELQGSKEKEDSMENKESNESHCQEMELKIKQLSFETENARKEEEEMRMKAQEMKQEAENSKALSEEIEGKLEILFKQAEEAKADEKRAVEEMKLLSDAQGSVSVSDSSGKIVLTVDEFAALSGKINECEDLIERTETTAMAQVEAINTRRNEVNKKVEANLQAIEEIKAATDLALRNAEMADSAKLAVEGELKKWRQEEQKGLDLSDNSSTPISLQS