Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020234.t1 | XP_013443985.1 | 96.2 | 366 | 14 | 0 | 1 | 366 | 36 | 401 | 2.60E-204 | 721.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020234.t1 | Q9SJ74 | 69.9 | 369 | 106 | 4 | 1 | 366 | 38 | 404 | 1.2e-149 | 530.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020234.t1 | A0A072TKQ9 | 96.2 | 366 | 14 | 0 | 1 | 366 | 36 | 401 | 1.9e-204 | 721.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96299 | MS.gene020234 | PPI |
| MS.gene95132 | MS.gene020234 | PPI |
| MS.gene042118 | MS.gene020234 | PPI |
| MS.gene020234 | MS.gene012709 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020234.t1 | MTR_8g009880 | 96.175 | 366 | 14 | 0 | 1 | 366 | 36 | 401 | 0.0 | 731 |
| MS.gene020234.t1 | MTR_5g097620 | 85.095 | 369 | 51 | 3 | 1 | 365 | 73 | 441 | 0.0 | 639 |
| MS.gene020234.t1 | MTR_4g133620 | 34.309 | 376 | 213 | 9 | 2 | 362 | 41 | 397 | 1.04e-63 | 208 |
| MS.gene020234.t1 | MTR_2g026080 | 36.043 | 369 | 210 | 10 | 2 | 360 | 45 | 397 | 3.46e-63 | 207 |
| MS.gene020234.t1 | MTR_7g051910 | 32.527 | 372 | 226 | 6 | 1 | 365 | 40 | 393 | 1.67e-61 | 202 |
| MS.gene020234.t1 | MTR_5g093520 | 35.244 | 349 | 200 | 9 | 3 | 339 | 54 | 388 | 8.07e-59 | 196 |
| MS.gene020234.t1 | MTR_3g058510 | 30.595 | 353 | 220 | 8 | 2 | 345 | 42 | 378 | 6.94e-52 | 177 |
| MS.gene020234.t1 | MTR_8g028075 | 31.858 | 226 | 144 | 7 | 113 | 336 | 336 | 553 | 1.16e-30 | 122 |
| MS.gene020234.t1 | MTR_7g117375 | 31.399 | 293 | 166 | 13 | 34 | 317 | 92 | 358 | 2.14e-21 | 95.1 |
| MS.gene020234.t1 | MTR_2g018960 | 29.814 | 161 | 103 | 3 | 153 | 307 | 651 | 807 | 4.59e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020234.t1 | AT2G04850 | 69.919 | 369 | 106 | 4 | 1 | 366 | 38 | 404 | 0.0 | 519 |
| MS.gene020234.t1 | AT4G12980 | 34.444 | 360 | 212 | 5 | 1 | 349 | 44 | 390 | 8.73e-70 | 224 |
| MS.gene020234.t1 | AT3G25290 | 33.983 | 359 | 215 | 5 | 1 | 349 | 43 | 389 | 1.60e-69 | 223 |
| MS.gene020234.t1 | AT3G25290 | 33.983 | 359 | 215 | 5 | 1 | 349 | 43 | 389 | 1.60e-69 | 223 |
| MS.gene020234.t1 | AT5G47530 | 33.803 | 355 | 213 | 8 | 2 | 350 | 43 | 381 | 2.67e-66 | 215 |
| MS.gene020234.t1 | AT5G35735 | 33.705 | 359 | 212 | 10 | 12 | 365 | 55 | 392 | 7.54e-62 | 204 |
| MS.gene020234.t1 | AT4G17280 | 35.097 | 359 | 209 | 9 | 2 | 352 | 50 | 392 | 5.66e-61 | 201 |
| MS.gene020234.t1 | AT3G59070 | 30.532 | 357 | 214 | 12 | 21 | 361 | 72 | 410 | 5.51e-46 | 163 |
| MS.gene020234.t1 | AT3G07570 | 27.966 | 354 | 209 | 12 | 2 | 337 | 42 | 367 | 5.10e-30 | 118 |
| MS.gene020234.t1 | AT5G48750 | 29.954 | 217 | 134 | 4 | 1 | 213 | 49 | 251 | 6.03e-28 | 110 |
| MS.gene020234.t1 | AT3G61750 | 28.053 | 303 | 196 | 10 | 33 | 333 | 11 | 293 | 1.10e-26 | 108 |
| MS.gene020234.t1 | AT3G61750 | 27.103 | 321 | 212 | 10 | 15 | 333 | 70 | 370 | 3.17e-26 | 108 |
| MS.gene020234.t1 | AT5G54830 | 29.412 | 187 | 111 | 6 | 160 | 340 | 670 | 841 | 5.10e-14 | 73.9 |
Find 131 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTTTGCTTTCATTCT+TGG | 0.155320 | 8.3:-78784967 | MS.gene020234:CDS |
| ATTCCAAACAAGGTGGATTT+TGG | 0.189165 | 8.3:+78785248 | None:intergenic |
| GTTTGATTCTAGTTTGAATT+TGG | 0.197666 | 8.3:+78785275 | None:intergenic |
| GGTACTTTCATTTCACCTTC+TGG | 0.249020 | 8.3:-78785543 | MS.gene020234:CDS |
| AGACTTTAGCATTGTTGTTT+AGG | 0.279742 | 8.3:-78784837 | MS.gene020234:CDS |
| ACCTTAGAGCTAGTCTTCTT+TGG | 0.283155 | 8.3:-78785564 | MS.gene020234:CDS |
| AAACCAAAATCCACCTTGTT+TGG | 0.304424 | 8.3:-78785251 | MS.gene020234:CDS |
| GATTGGTGTTTCCATAGCTT+TGG | 0.318729 | 8.3:-78784650 | MS.gene020234:CDS |
| CACCTTCTGGATGGGTTGGA+TGG | 0.322109 | 8.3:-78785530 | MS.gene020234:CDS |
| CGATAACTGCACGTTACTTT+AGG | 0.338646 | 8.3:-78785038 | MS.gene020234:CDS |
| TCCTGTCATCTCCGATGAAA+TGG | 0.341469 | 8.3:+78785497 | None:intergenic |
| GTTTGAATTTGGCATAGATT+TGG | 0.341934 | 8.3:+78785286 | None:intergenic |
| CTGAACTTGTTCCTAGCGTT+TGG | 0.344648 | 8.3:+78784814 | None:intergenic |
| TTCGCCATTGGCATTCGCCT+TGG | 0.354937 | 8.3:-78784934 | MS.gene020234:CDS |
| GCTTTCATTCTTGGAACTGT+GGG | 0.358819 | 8.3:-78784958 | MS.gene020234:CDS |
| AATCCTACCACCACTTTGTT+GGG | 0.359563 | 8.3:-78784780 | MS.gene020234:CDS |
| TGCCAAGCTGAGTTACTGTT+TGG | 0.360154 | 8.3:-78784686 | MS.gene020234:CDS |
| ACCTTCTGGATGGGTTGGAT+GGG | 0.360379 | 8.3:-78785529 | MS.gene020234:CDS |
| TCTTCCATGGCGGCCATATA+TGG | 0.369335 | 8.3:-78785345 | MS.gene020234:CDS |
| GGCCATATATGGTGGCAAAA+AGG | 0.375935 | 8.3:-78785334 | MS.gene020234:CDS |
| TCGCCATTGGCATTCGCCTT+GGG | 0.378753 | 8.3:-78784933 | MS.gene020234:CDS |
| TTGGGACTTTCTACTCTGAT+TGG | 0.385534 | 8.3:-78784667 | MS.gene020234:CDS |
| CCTCTCTTCCATTGCCACCT+TGG | 0.387175 | 8.3:-78785169 | MS.gene020234:CDS |
| GATATTCTGTAGGAAATCTA+AGG | 0.396344 | 8.3:-78784611 | MS.gene020234:CDS |
| AAATCCTACCACCACTTTGT+TGG | 0.398807 | 8.3:-78784781 | MS.gene020234:CDS |
| GCCACCTTGGACGTGTTGTC+AGG | 0.406139 | 8.3:-78785156 | MS.gene020234:CDS |
| ACCAAAGAAGACTAGCTCTA+AGG | 0.410370 | 8.3:+78785563 | None:intergenic |
| GGGTACTCTTGTGTGGTGCT+CGG | 0.419514 | 8.3:-78784760 | MS.gene020234:CDS |
| TCCATGCTATAGAGGCTTGT+TGG | 0.422158 | 8.3:+78785607 | None:intergenic |
| TTTCAAGGGTTTGAAGTGAT+GGG | 0.426534 | 8.3:-78784724 | MS.gene020234:CDS |
| CTTTCATTTCACCTTCTGGA+TGG | 0.427020 | 8.3:-78785539 | MS.gene020234:CDS |
| GGTACTCTTGTGTGGTGCTC+GGG | 0.429304 | 8.3:-78784759 | MS.gene020234:CDS |
| ATTTCACCTTCTGGATGGGT+TGG | 0.432760 | 8.3:-78785534 | MS.gene020234:CDS |
| AATCGAGGACTTTATGTTCA+AGG | 0.432833 | 8.3:-78785228 | MS.gene020234:CDS |
| GGGTTTGTGAATGTGTTTCA+AGG | 0.433084 | 8.3:-78784739 | MS.gene020234:CDS |
| CCTTCTGGATGGGTTGGATG+GGG | 0.433473 | 8.3:-78785528 | MS.gene020234:CDS |
| AGGACTACTTGGCCTGAACT+TGG | 0.435228 | 8.3:+78785447 | None:intergenic |
| CCATGCTATAGAGGCTTGTT+GGG | 0.439886 | 8.3:+78785608 | None:intergenic |
| TAGCTTTGGAGGTGAACTCT+TGG | 0.445429 | 8.3:-78784636 | MS.gene020234:CDS |
| CGCCTTGGGCAATTGTCTCC+AGG | 0.448142 | 8.3:-78784919 | MS.gene020234:CDS |
| GGAACTGTGGGGTTCGCCAT+TGG | 0.448882 | 8.3:-78784946 | MS.gene020234:CDS |
| CCTGTCATCTCCGATGAAAT+GGG | 0.449627 | 8.3:+78785498 | None:intergenic |
| TTTCATTTCACCTTCTGGAT+GGG | 0.456584 | 8.3:-78785538 | MS.gene020234:CDS |
| GTTTCAAGGGTTTGAAGTGA+TGG | 0.464273 | 8.3:-78784725 | MS.gene020234:CDS |
| AGCTTTGGAGGTGAACTCTT+GGG | 0.465949 | 8.3:-78784635 | MS.gene020234:CDS |
| GCCAAGCTGAGTTACTGTTT+GGG | 0.467839 | 8.3:-78784685 | MS.gene020234:CDS |
| AGCTCTAAGGTGGAGTTATG+AGG | 0.469977 | 8.3:+78785576 | None:intergenic |
| CAAACGCTAGGAACAAGTTC+AGG | 0.470832 | 8.3:-78784813 | MS.gene020234:CDS |
| TATAGCCTCCACAGGAAGCT+TGG | 0.472577 | 8.3:-78784889 | MS.gene020234:CDS |
| TACTTTGAATGCCATCTCAT+GGG | 0.476629 | 8.3:-78785082 | MS.gene020234:CDS |
| GGAACAAGTTCAGGAAGTAT+TGG | 0.480063 | 8.3:-78784804 | MS.gene020234:CDS |
| GAGAGGTCAGTGGAGGTGGT+TGG | 0.482995 | 8.3:+78785186 | None:intergenic |
| CATTCACCTTATCTCTTCCA+TGG | 0.483758 | 8.3:-78785358 | MS.gene020234:CDS |
| GCTATAGAGGCTTGTTGGGT+GGG | 0.484183 | 8.3:+78785612 | None:intergenic |
| ACATTCGGGTCTATGATGTA+AGG | 0.484186 | 8.3:+78785420 | None:intergenic |
| GAATCACTCTCAGCATTGTA+AGG | 0.485398 | 8.3:+78785109 | None:intergenic |
| GGAAGAGAGGTCAGTGGAGG+TGG | 0.485795 | 8.3:+78785182 | None:intergenic |
| GAATTTGGCATAGATTTGGA+TGG | 0.486860 | 8.3:+78785290 | None:intergenic |
| TGCTTTCATTCTTGGAACTG+TGG | 0.487236 | 8.3:-78784959 | MS.gene020234:CDS |
| ATGAAGAGAGAAGGACTTGT+CGG | 0.488902 | 8.3:-78784580 | MS.gene020234:CDS |
| GCCTGAACTTGGGTCAGAAA+AGG | 0.492569 | 8.3:+78785458 | None:intergenic |
| CAGCTTGGCATAGGATCTGC+TGG | 0.493751 | 8.3:+78784699 | None:intergenic |
| TGTAAGGAAGTAGGACTACT+TGG | 0.498128 | 8.3:+78785436 | None:intergenic |
| TTCAAGGGTTTGAAGTGATG+GGG | 0.499384 | 8.3:-78784723 | MS.gene020234:CDS |
| TGGTGTTTCCATAGCTTTGG+AGG | 0.501209 | 8.3:-78784647 | MS.gene020234:CDS |
| TGGAGGCTATACTCTACTCC+TGG | 0.506212 | 8.3:+78784901 | None:intergenic |
| GGTCTATGATGTAAGGAAGT+AGG | 0.509135 | 8.3:+78785427 | None:intergenic |
| AATTTGGCATAGATTTGGAT+GGG | 0.513427 | 8.3:+78785291 | None:intergenic |
| TGCTATAGAGGCTTGTTGGG+TGG | 0.514341 | 8.3:+78785611 | None:intergenic |
| GAAGAGAAAATGAAGAGAGA+AGG | 0.521275 | 8.3:-78784589 | MS.gene020234:CDS |
| AGAGTTCACCTCCAAAGCTA+TGG | 0.533936 | 8.3:+78784639 | None:intergenic |
| CTAAAGTCTGCAAGGCTCCA+AGG | 0.539524 | 8.3:+78784851 | None:intergenic |
| GAGGTGGTTGGATGAATAGT+AGG | 0.540410 | 8.3:+78785198 | None:intergenic |
| GGTTTGTGAATGTGTTTCAA+GGG | 0.541986 | 8.3:-78784738 | MS.gene020234:CDS |
| ATCCACCTTGTTTGGAATCG+AGG | 0.543575 | 8.3:-78785243 | MS.gene020234:CDS |
| TTGTCGGAACTTCTGACAAA+GGG | 0.544921 | 8.3:-78784564 | MS.gene020234:CDS |
| GTACTTTGAATGCCATCTCA+TGG | 0.547445 | 8.3:-78785083 | MS.gene020234:CDS |
| TCCCAAACAGTAACTCAGCT+TGG | 0.549887 | 8.3:+78784684 | None:intergenic |
| CCCATTTCATCGGAGATGAC+AGG | 0.549985 | 8.3:-78785498 | MS.gene020234:CDS |
| CAACACGTCCAAGGTGGCAA+TGG | 0.551704 | 8.3:+78785161 | None:intergenic |
| ACAGTAACTCAGCTTGGCAT+AGG | 0.553331 | 8.3:+78784690 | None:intergenic |
| GTAGAAAGTCCATGCTATAG+AGG | 0.558385 | 8.3:+78785599 | None:intergenic |
| GAGTAGAGTATAGCCTCCAC+AGG | 0.561022 | 8.3:-78784897 | MS.gene020234:CDS |
| CTTTGTTGGGTACTCTTGTG+TGG | 0.563285 | 8.3:-78784767 | MS.gene020234:CDS |
| CAAGGCTCCAAGGCAAAACA+CGG | 0.566886 | 8.3:+78784861 | None:intergenic |
| TTGCCCAAGGCGAATGCCAA+TGG | 0.566998 | 8.3:+78784930 | None:intergenic |
| GCGTGGTTCTATGCTCATGC+AGG | 0.567093 | 8.3:-78784994 | MS.gene020234:CDS |
| CAACAATGCTAAAGTCTGCA+AGG | 0.567757 | 8.3:+78784843 | None:intergenic |
| GGGAATCAACCCCATTTCAT+CGG | 0.569185 | 8.3:-78785508 | MS.gene020234:CDS |
| GCCACCATATATGGCCGCCA+TGG | 0.570636 | 8.3:+78785341 | None:intergenic |
| TTTAGGCATATTCAATCACT+AGG | 0.571060 | 8.3:-78785021 | MS.gene020234:CDS |
| CGATTCCAAGCTTCCTGTGG+AGG | 0.572777 | 8.3:+78784884 | None:intergenic |
| CTTTCATTCTTGGAACTGTG+GGG | 0.574407 | 8.3:-78784957 | MS.gene020234:CDS |
| GGACTACTTGGCCTGAACTT+GGG | 0.575450 | 8.3:+78785448 | None:intergenic |
| TGGCCGCCATGGAAGAGATA+AGG | 0.578696 | 8.3:+78785352 | None:intergenic |
| AAAGTCCTCGATTCCAAACA+AGG | 0.585689 | 8.3:+78785238 | None:intergenic |
| GCTCTAAGGTGGAGTTATGA+GGG | 0.585753 | 8.3:+78785577 | None:intergenic |
| TATGTATTCTCTTTCAAGTG+TGG | 0.586082 | 8.3:+78784530 | None:intergenic |
| TGTTGTTTAGGCCAAACGCT+AGG | 0.586674 | 8.3:-78784825 | MS.gene020234:CDS |
| ACAATGCTGAGAGTGATTCA+CGG | 0.588148 | 8.3:-78785105 | MS.gene020234:CDS |
| CCCAACAAGCCTCTATAGCA+TGG | 0.588511 | 8.3:-78785608 | MS.gene020234:CDS |
| ATTTGGCATAGATTTGGATG+GGG | 0.589019 | 8.3:+78785292 | None:intergenic |
| CAAAAGAATACCCCATGAGA+TGG | 0.592702 | 8.3:+78785071 | None:intergenic |
| ACTCTTGGGTGATATTCTGT+AGG | 0.598331 | 8.3:-78784621 | MS.gene020234:CDS |
| TTTGGCATAGATTTGGATGG+GGG | 0.598707 | 8.3:+78785293 | None:intergenic |
| TCAAGGGTTTGAAGTGATGG+GGG | 0.598986 | 8.3:-78784722 | MS.gene020234:CDS |
| AAAGAAGACTAGCTCTAAGG+TGG | 0.603475 | 8.3:+78785566 | None:intergenic |
| TCAAGTGGTCGAGAGAGTAG+TGG | 0.610217 | 8.3:+78785381 | None:intergenic |
| CGGCGATTCCAAGCTTCCTG+TGG | 0.614274 | 8.3:+78784881 | None:intergenic |
| CCAAGGTGGCAATGGAAGAG+AGG | 0.618055 | 8.3:+78785169 | None:intergenic |
| CTGTCATCTCCGATGAAATG+GGG | 0.622824 | 8.3:+78785499 | None:intergenic |
| TGAACCTGACAACACGTCCA+AGG | 0.624862 | 8.3:+78785152 | None:intergenic |
| CCCCATCCAACCCATCCAGA+AGG | 0.626283 | 8.3:+78785528 | None:intergenic |
| CTTGTCGGAACTTCTGACAA+AGG | 0.629302 | 8.3:-78784565 | MS.gene020234:CDS |
| GGCAATGGAAGAGAGGTCAG+TGG | 0.631399 | 8.3:+78785176 | None:intergenic |
| ACTTCTGACAAAGGGAGTAG+TGG | 0.632759 | 8.3:-78784556 | MS.gene020234:CDS |
| CGTGCAGTTATCGCTCCCAT+CGG | 0.634360 | 8.3:+78785048 | None:intergenic |
| CACAAGAGTACCCAACAAAG+TGG | 0.636742 | 8.3:+78784770 | None:intergenic |
| ACTTTGAATGCCATCTCATG+GGG | 0.644712 | 8.3:-78785081 | MS.gene020234:CDS |
| GTACCCAACAAAGTGGTGGT+AGG | 0.645713 | 8.3:+78784777 | None:intergenic |
| TCCATGGCGGCCATATATGG+TGG | 0.646343 | 8.3:-78785342 | MS.gene020234:CDS |
| CTCCTGGAGACAATTGCCCA+AGG | 0.650171 | 8.3:+78784917 | None:intergenic |
| GAGATAAGGTGAATGTCAAG+TGG | 0.666609 | 8.3:+78785366 | None:intergenic |
| TTCAATCACTAGGTCCTGCG+TGG | 0.687681 | 8.3:-78785011 | MS.gene020234:CDS |
| AATGGAAGAGAGGTCAGTGG+AGG | 0.692402 | 8.3:+78785179 | None:intergenic |
| TCACCTTATCTCTTCCATGG+CGG | 0.701620 | 8.3:-78785355 | MS.gene020234:CDS |
| GTCCTCGATTCCAAACAAGG+TGG | 0.704268 | 8.3:+78785241 | None:intergenic |
| AAGAGTACCCAACAAAGTGG+TGG | 0.705072 | 8.3:+78784773 | None:intergenic |
| GCATGAGCATAGAACCACGC+AGG | 0.706285 | 8.3:+78784997 | None:intergenic |
| AAGGTCTGTCTGTTGACGAG+CGG | 0.717514 | 8.3:+78785128 | None:intergenic |
| ACCTGACAACACGTCCAAGG+TGG | 0.719059 | 8.3:+78785155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTGATTCTAGTTTGAATT+TGG | + | chr8.3:78784892-78784911 | None:intergenic | 25.0% |
| AATTTGGCATAGATTTGGAT+GGG | + | chr8.3:78784876-78784895 | None:intergenic | 30.0% | |
| CAATTGTTTGCTTTCATTCT+TGG | - | chr8.3:78785197-78785216 | MS.gene020234:CDS | 30.0% | |
| GATATTCTGTAGGAAATCTA+AGG | - | chr8.3:78785553-78785572 | MS.gene020234:CDS | 30.0% | |
| GTTTGAATTTGGCATAGATT+TGG | + | chr8.3:78784881-78784900 | None:intergenic | 30.0% | |
| TTTAGGCATATTCAATCACT+AGG | - | chr8.3:78785143-78785162 | MS.gene020234:CDS | 30.0% | |
| !! | AGACTTTAGCATTGTTGTTT+AGG | - | chr8.3:78785327-78785346 | MS.gene020234:CDS | 30.0% |
| !!! | ATTTTTGGAGCTTTACATTC+GGG | + | chr8.3:78784761-78784780 | None:intergenic | 30.0% |
| !!! | GATTTTTGGAGCTTTACATT+CGG | + | chr8.3:78784762-78784781 | None:intergenic | 30.0% |
| AAACCAAAATCCACCTTGTT+TGG | - | chr8.3:78784913-78784932 | MS.gene020234:CDS | 35.0% | |
| AATCGAGGACTTTATGTTCA+AGG | - | chr8.3:78784936-78784955 | MS.gene020234:CDS | 35.0% | |
| ATTTGGCATAGATTTGGATG+GGG | + | chr8.3:78784875-78784894 | None:intergenic | 35.0% | |
| GAAGAGAAAATGAAGAGAGA+AGG | - | chr8.3:78785575-78785594 | MS.gene020234:CDS | 35.0% | |
| GAATTTGGCATAGATTTGGA+TGG | + | chr8.3:78784877-78784896 | None:intergenic | 35.0% | |
| GGTTTGTGAATGTGTTTCAA+GGG | - | chr8.3:78785426-78785445 | MS.gene020234:CDS | 35.0% | |
| TACTTTGAATGCCATCTCAT+GGG | - | chr8.3:78785082-78785101 | MS.gene020234:CDS | 35.0% | |
| TTTCATTTCACCTTCTGGAT+GGG | - | chr8.3:78784626-78784645 | MS.gene020234:CDS | 35.0% | |
| ! | TTTCAAGGGTTTGAAGTGAT+GGG | - | chr8.3:78785440-78785459 | MS.gene020234:CDS | 35.0% |
| !! | ATTCCAAACAAGGTGGATTT+TGG | + | chr8.3:78784919-78784938 | None:intergenic | 35.0% |
| AAAAAGGCCACCATACACAA+CGG | - | chr8.3:78784846-78784865 | MS.gene020234:CDS | 40.0% | |
| AAAGTCCTCGATTCCAAACA+AGG | + | chr8.3:78784929-78784948 | None:intergenic | 40.0% | |
| AAATCCTACCACCACTTTGT+TGG | - | chr8.3:78785383-78785402 | MS.gene020234:CDS | 40.0% | |
| AATCCTACCACCACTTTGTT+GGG | - | chr8.3:78785384-78785403 | MS.gene020234:CDS | 40.0% | |
| ACAATGCTGAGAGTGATTCA+CGG | - | chr8.3:78785059-78785078 | MS.gene020234:CDS | 40.0% | |
| ACATTCGGGTCTATGATGTA+AGG | + | chr8.3:78784747-78784766 | None:intergenic | 40.0% | |
| ACTCTTGGGTGATATTCTGT+AGG | - | chr8.3:78785543-78785562 | MS.gene020234:CDS | 40.0% | |
| ACTTTGAATGCCATCTCATG+GGG | - | chr8.3:78785083-78785102 | MS.gene020234:CDS | 40.0% | |
| ATGAAGAGAGAAGGACTTGT+CGG | - | chr8.3:78785584-78785603 | MS.gene020234:CDS | 40.0% | |
| CAAAAGAATACCCCATGAGA+TGG | + | chr8.3:78785096-78785115 | None:intergenic | 40.0% | |
| CAACAATGCTAAAGTCTGCA+AGG | + | chr8.3:78785324-78785343 | None:intergenic | 40.0% | |
| CATTCACCTTATCTCTTCCA+TGG | - | chr8.3:78784806-78784825 | MS.gene020234:CDS | 40.0% | |
| CTTTCATTCTTGGAACTGTG+GGG | - | chr8.3:78785207-78785226 | MS.gene020234:CDS | 40.0% | |
| CTTTCATTTCACCTTCTGGA+TGG | - | chr8.3:78784625-78784644 | MS.gene020234:CDS | 40.0% | |
| GAATCACTCTCAGCATTGTA+AGG | + | chr8.3:78785058-78785077 | None:intergenic | 40.0% | |
| GAGATAAGGTGAATGTCAAG+TGG | + | chr8.3:78784801-78784820 | None:intergenic | 40.0% | |
| GCTTTCATTCTTGGAACTGT+GGG | - | chr8.3:78785206-78785225 | MS.gene020234:CDS | 40.0% | |
| GGGTTTGTGAATGTGTTTCA+AGG | - | chr8.3:78785425-78785444 | MS.gene020234:CDS | 40.0% | |
| GGTACTTTCATTTCACCTTC+TGG | - | chr8.3:78784621-78784640 | MS.gene020234:CDS | 40.0% | |
| GGTCTATGATGTAAGGAAGT+AGG | + | chr8.3:78784740-78784759 | None:intergenic | 40.0% | |
| GTACTTTGAATGCCATCTCA+TGG | - | chr8.3:78785081-78785100 | MS.gene020234:CDS | 40.0% | |
| GTAGAAAGTCCATGCTATAG+AGG | + | chr8.3:78784568-78784587 | None:intergenic | 40.0% | |
| TGCTTTCATTCTTGGAACTG+TGG | - | chr8.3:78785205-78785224 | MS.gene020234:CDS | 40.0% | |
| TGTAAGGAAGTAGGACTACT+TGG | + | chr8.3:78784731-78784750 | None:intergenic | 40.0% | |
| TTGGGACTTTCTACTCTGAT+TGG | - | chr8.3:78785497-78785516 | MS.gene020234:CDS | 40.0% | |
| TTGTCGGAACTTCTGACAAA+GGG | - | chr8.3:78785600-78785619 | MS.gene020234:CDS | 40.0% | |
| TTTGGCATAGATTTGGATGG+GGG | + | chr8.3:78784874-78784893 | None:intergenic | 40.0% | |
| ! | CGATAACTGCACGTTACTTT+AGG | - | chr8.3:78785126-78785145 | MS.gene020234:CDS | 40.0% |
| ! | GATTGGTGTTTCCATAGCTT+TGG | - | chr8.3:78785514-78785533 | MS.gene020234:CDS | 40.0% |
| ! | GGAACAAGTTCAGGAAGTAT+TGG | - | chr8.3:78785360-78785379 | MS.gene020234:CDS | 40.0% |
| ! | GTTTCAAGGGTTTGAAGTGA+TGG | - | chr8.3:78785439-78785458 | MS.gene020234:CDS | 40.0% |
| ! | TTCAAGGGTTTGAAGTGATG+GGG | - | chr8.3:78785441-78785460 | MS.gene020234:CDS | 40.0% |
| !! | AAAGAAGACTAGCTCTAAGG+TGG | + | chr8.3:78784601-78784620 | None:intergenic | 40.0% |
| !! | ACCAAAGAAGACTAGCTCTA+AGG | + | chr8.3:78784604-78784623 | None:intergenic | 40.0% |
| !! | ACCTTAGAGCTAGTCTTCTT+TGG | - | chr8.3:78784600-78784619 | MS.gene020234:CDS | 40.0% |
| !! | GAGAGAGTAGTGGAGATTTT+TGG | + | chr8.3:78784776-78784795 | None:intergenic | 40.0% |
| ACAGTAACTCAGCTTGGCAT+AGG | + | chr8.3:78785477-78785496 | None:intergenic | 45.0% | |
| ACTTCTGACAAAGGGAGTAG+TGG | - | chr8.3:78785608-78785627 | MS.gene020234:CDS | 45.0% | |
| AGAGTTCACCTCCAAAGCTA+TGG | + | chr8.3:78785528-78785547 | None:intergenic | 45.0% | |
| ATTTCACCTTCTGGATGGGT+TGG | - | chr8.3:78784630-78784649 | MS.gene020234:CDS | 45.0% | |
| CAAACGCTAGGAACAAGTTC+AGG | - | chr8.3:78785351-78785370 | MS.gene020234:CDS | 45.0% | |
| CCTGTCATCTCCGATGAAAT+GGG | + | chr8.3:78784669-78784688 | None:intergenic | 45.0% | |
| CTGTCATCTCCGATGAAATG+GGG | + | chr8.3:78784668-78784687 | None:intergenic | 45.0% | |
| CTTGTCGGAACTTCTGACAA+AGG | - | chr8.3:78785599-78785618 | MS.gene020234:CDS | 45.0% | |
| CTTTGTTGGGTACTCTTGTG+TGG | - | chr8.3:78785397-78785416 | MS.gene020234:CDS | 45.0% | |
| GAGGTGGTTGGATGAATAGT+AGG | + | chr8.3:78784969-78784988 | None:intergenic | 45.0% | |
| GCCAAGCTGAGTTACTGTTT+GGG | - | chr8.3:78785479-78785498 | MS.gene020234:CDS | 45.0% | |
| GGCCATATATGGTGGCAAAA+AGG | - | chr8.3:78784830-78784849 | MS.gene020234:CDS | 45.0% | |
| GGGAATCAACCCCATTTCAT+CGG | - | chr8.3:78784656-78784675 | MS.gene020234:CDS | 45.0% | |
| TCACCTTATCTCTTCCATGG+CGG | - | chr8.3:78784809-78784828 | MS.gene020234:CDS | 45.0% | |
| TCCATGCTATAGAGGCTTGT+TGG | + | chr8.3:78784560-78784579 | None:intergenic | 45.0% | |
| TCCCAAACAGTAACTCAGCT+TGG | + | chr8.3:78785483-78785502 | None:intergenic | 45.0% | |
| TCCTGTCATCTCCGATGAAA+TGG | + | chr8.3:78784670-78784689 | None:intergenic | 45.0% | |
| TGCCAAGCTGAGTTACTGTT+TGG | - | chr8.3:78785478-78785497 | MS.gene020234:CDS | 45.0% | |
| ! | ATCCACCTTGTTTGGAATCG+AGG | - | chr8.3:78784921-78784940 | MS.gene020234:CDS | 45.0% |
| ! | CCATGCTATAGAGGCTTGTT+GGG | + | chr8.3:78784559-78784578 | None:intergenic | 45.0% |
| ! | CTGAACTTGTTCCTAGCGTT+TGG | + | chr8.3:78785353-78785372 | None:intergenic | 45.0% |
| ! | GGCCTTTTTGCCACCATATA+TGG | + | chr8.3:78784835-78784854 | None:intergenic | 45.0% |
| ! | TCAAGGGTTTGAAGTGATGG+GGG | - | chr8.3:78785442-78785461 | MS.gene020234:CDS | 45.0% |
| ! | TGTTGTTTAGGCCAAACGCT+AGG | - | chr8.3:78785339-78785358 | MS.gene020234:CDS | 45.0% |
| !! | AAGAGTACCCAACAAAGTGG+TGG | + | chr8.3:78785394-78785413 | None:intergenic | 45.0% |
| !! | AGCTCTAAGGTGGAGTTATG+AGG | + | chr8.3:78784591-78784610 | None:intergenic | 45.0% |
| !! | AGCTTTGGAGGTGAACTCTT+GGG | - | chr8.3:78785529-78785548 | MS.gene020234:CDS | 45.0% |
| !! | ATGGGGTATTCTTTTGCCGA+TGG | - | chr8.3:78785100-78785119 | MS.gene020234:CDS | 45.0% |
| !! | CACAAGAGTACCCAACAAAG+TGG | + | chr8.3:78785397-78785416 | None:intergenic | 45.0% |
| !! | GCTCTAAGGTGGAGTTATGA+GGG | + | chr8.3:78784590-78784609 | None:intergenic | 45.0% |
| !! | TAGCTTTGGAGGTGAACTCT+TGG | - | chr8.3:78785528-78785547 | MS.gene020234:CDS | 45.0% |
| !! | TGGGGTATTCTTTTGCCGAT+GGG | - | chr8.3:78785101-78785120 | MS.gene020234:CDS | 45.0% |
| !! | TGGTGTTTCCATAGCTTTGG+AGG | - | chr8.3:78785517-78785536 | MS.gene020234:CDS | 45.0% |
| AAGGTCTGTCTGTTGACGAG+CGG | + | chr8.3:78785039-78785058 | None:intergenic | 50.0% | |
| AATGGAAGAGAGGTCAGTGG+AGG | + | chr8.3:78784988-78785007 | None:intergenic | 50.0% | |
| AGGACTACTTGGCCTGAACT+TGG | + | chr8.3:78784720-78784739 | None:intergenic | 50.0% | |
| CAAGGCTCCAAGGCAAAACA+CGG | + | chr8.3:78785306-78785325 | None:intergenic | 50.0% | |
| CCCAACAAGCCTCTATAGCA+TGG | - | chr8.3:78784556-78784575 | MS.gene020234:CDS | 50.0% | |
| CCCATTTCATCGGAGATGAC+AGG | - | chr8.3:78784666-78784685 | MS.gene020234:CDS | 50.0% | |
| CTAAAGTCTGCAAGGCTCCA+AGG | + | chr8.3:78785316-78785335 | None:intergenic | 50.0% | |
| GAGTAGAGTATAGCCTCCAC+AGG | - | chr8.3:78785267-78785286 | MS.gene020234:CDS | 50.0% | |
| GCCTGAACTTGGGTCAGAAA+AGG | + | chr8.3:78784709-78784728 | None:intergenic | 50.0% | |
| GGACTACTTGGCCTGAACTT+GGG | + | chr8.3:78784719-78784738 | None:intergenic | 50.0% | |
| GTACCCAACAAAGTGGTGGT+AGG | + | chr8.3:78785390-78785409 | None:intergenic | 50.0% | |
| GTCCTCGATTCCAAACAAGG+TGG | + | chr8.3:78784926-78784945 | None:intergenic | 50.0% | |
| TATAGCCTCCACAGGAAGCT+TGG | - | chr8.3:78785275-78785294 | MS.gene020234:CDS | 50.0% | |
| TCAAGTGGTCGAGAGAGTAG+TGG | + | chr8.3:78784786-78784805 | None:intergenic | 50.0% | |
| TCTTCCATGGCGGCCATATA+TGG | - | chr8.3:78784819-78784838 | MS.gene020234:CDS | 50.0% | |
| TGAACCTGACAACACGTCCA+AGG | + | chr8.3:78785015-78785034 | None:intergenic | 50.0% | |
| TGGAGGCTATACTCTACTCC+TGG | + | chr8.3:78785266-78785285 | None:intergenic | 50.0% | |
| TTCAATCACTAGGTCCTGCG+TGG | - | chr8.3:78785153-78785172 | MS.gene020234:CDS | 50.0% | |
| ! | GCCTTTTCTGACCCAAGTTC+AGG | - | chr8.3:78784705-78784724 | MS.gene020234:CDS | 50.0% |
| !! | ACCTTCTGGATGGGTTGGAT+GGG | - | chr8.3:78784635-78784654 | MS.gene020234:CDS | 50.0% |
| !! | GCTATAGAGGCTTGTTGGGT+GGG | + | chr8.3:78784555-78784574 | None:intergenic | 50.0% |
| !! | TGCTATAGAGGCTTGTTGGG+TGG | + | chr8.3:78784556-78784575 | None:intergenic | 50.0% |
| ACCTGACAACACGTCCAAGG+TGG | + | chr8.3:78785012-78785031 | None:intergenic | 55.0% | |
| CAACACGTCCAAGGTGGCAA+TGG | + | chr8.3:78785006-78785025 | None:intergenic | 55.0% | |
| CAGCTTGGCATAGGATCTGC+TGG | + | chr8.3:78785468-78785487 | None:intergenic | 55.0% | |
| CCAAGGTGGCAATGGAAGAG+AGG | + | chr8.3:78784998-78785017 | None:intergenic | 55.0% | |
| CCTCTCTTCCATTGCCACCT+TGG | - | chr8.3:78784995-78785014 | MS.gene020234:CDS | 55.0% | |
| CGATTCCAAGCTTCCTGTGG+AGG | + | chr8.3:78785283-78785302 | None:intergenic | 55.0% | |
| CGTGCAGTTATCGCTCCCAT+CGG | + | chr8.3:78785119-78785138 | None:intergenic | 55.0% | |
| CTCCTGGAGACAATTGCCCA+AGG | + | chr8.3:78785250-78785269 | None:intergenic | 55.0% | |
| GCATGAGCATAGAACCACGC+AGG | + | chr8.3:78785170-78785189 | None:intergenic | 55.0% | |
| GGCAATGGAAGAGAGGTCAG+TGG | + | chr8.3:78784991-78785010 | None:intergenic | 55.0% | |
| GGGTACTCTTGTGTGGTGCT+CGG | - | chr8.3:78785404-78785423 | MS.gene020234:CDS | 55.0% | |
| GGTACTCTTGTGTGGTGCTC+GGG | - | chr8.3:78785405-78785424 | MS.gene020234:CDS | 55.0% | |
| TCCATGGCGGCCATATATGG+TGG | - | chr8.3:78784822-78784841 | MS.gene020234:CDS | 55.0% | |
| TCGCCATTGGCATTCGCCTT+GGG | - | chr8.3:78785231-78785250 | MS.gene020234:CDS | 55.0% | |
| TGGCCGCCATGGAAGAGATA+AGG | + | chr8.3:78784815-78784834 | None:intergenic | 55.0% | |
| TTCGCCATTGGCATTCGCCT+TGG | - | chr8.3:78785230-78785249 | MS.gene020234:CDS | 55.0% | |
| TTGCCCAAGGCGAATGCCAA+TGG | + | chr8.3:78785237-78785256 | None:intergenic | 55.0% | |
| ! | GCGTGGTTCTATGCTCATGC+AGG | - | chr8.3:78785170-78785189 | MS.gene020234:CDS | 55.0% |
| ! | GGAATCGCCGTGTTTTGCCT+TGG | - | chr8.3:78785296-78785315 | MS.gene020234:CDS | 55.0% |
| !! | CACCTTCTGGATGGGTTGGA+TGG | - | chr8.3:78784634-78784653 | MS.gene020234:CDS | 55.0% |
| !! | CCTTCTGGATGGGTTGGATG+GGG | - | chr8.3:78784636-78784655 | MS.gene020234:CDS | 55.0% |
| CCCCATCCAACCCATCCAGA+AGG | + | chr8.3:78784639-78784658 | None:intergenic | 60.0% | |
| CGCCTTGGGCAATTGTCTCC+AGG | - | chr8.3:78785245-78785264 | MS.gene020234:CDS | 60.0% | |
| CGGCGATTCCAAGCTTCCTG+TGG | + | chr8.3:78785286-78785305 | None:intergenic | 60.0% | |
| GAGAGGTCAGTGGAGGTGGT+TGG | + | chr8.3:78784981-78785000 | None:intergenic | 60.0% | |
| GCCACCATATATGGCCGCCA+TGG | + | chr8.3:78784826-78784845 | None:intergenic | 60.0% | |
| GCCACCTTGGACGTGTTGTC+AGG | - | chr8.3:78785008-78785027 | MS.gene020234:CDS | 60.0% | |
| GGAACTGTGGGGTTCGCCAT+TGG | - | chr8.3:78785218-78785237 | MS.gene020234:CDS | 60.0% | |
| GGAAGAGAGGTCAGTGGAGG+TGG | + | chr8.3:78784985-78785004 | None:intergenic | 60.0% | |
| !! | GATGGGGGCACCGTTGTGTA+TGG | + | chr8.3:78784859-78784878 | None:intergenic | 60.0% |
| !! | GGGGGCACCGTTGTGTATGG+TGG | + | chr8.3:78784856-78784875 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 78784543 | 78785643 | 78784543 | ID=MS.gene020234 |
| chr8.3 | mRNA | 78784543 | 78785643 | 78784543 | ID=MS.gene020234.t1;Parent=MS.gene020234 |
| chr8.3 | exon | 78784543 | 78785643 | 78784543 | ID=MS.gene020234.t1.exon1;Parent=MS.gene020234.t1 |
| chr8.3 | CDS | 78784543 | 78785643 | 78784543 | ID=cds.MS.gene020234.t1;Parent=MS.gene020234.t1 |
| Gene Sequence |
| Protein sequence |
