Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012709.t1 | XP_003610567.1 | 97.2 | 399 | 11 | 0 | 1 | 399 | 1 | 399 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012709.t1 | Q8VYH6 | 51.0 | 390 | 174 | 7 | 2 | 385 | 11 | 389 | 1.6e-102 | 374.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012709.t1 | G7JLR1 | 97.2 | 399 | 11 | 0 | 1 | 399 | 1 | 399 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020907 | MS.gene012709 | PPI |
| MS.gene45410 | MS.gene012709 | PPI |
| MS.gene012709 | MS.gene38189 | PPI |
| MS.gene38073 | MS.gene012709 | PPI |
| MS.gene39320 | MS.gene012709 | PPI |
| MS.gene81207 | MS.gene012709 | PPI |
| MS.gene020234 | MS.gene012709 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012709.t1 | MTR_4g133620 | 97.243 | 399 | 11 | 0 | 1 | 399 | 1 | 399 | 0.0 | 804 |
| MS.gene012709.t1 | MTR_2g026080 | 70.321 | 374 | 107 | 3 | 25 | 396 | 29 | 400 | 0.0 | 532 |
| MS.gene012709.t1 | MTR_7g051910 | 42.448 | 384 | 196 | 8 | 15 | 389 | 15 | 382 | 6.41e-97 | 295 |
| MS.gene012709.t1 | MTR_3g058510 | 41.713 | 362 | 196 | 8 | 25 | 381 | 26 | 377 | 9.67e-87 | 268 |
| MS.gene012709.t1 | MTR_8g009880 | 32.117 | 411 | 238 | 10 | 6 | 397 | 9 | 397 | 1.99e-65 | 214 |
| MS.gene012709.t1 | MTR_5g097620 | 34.204 | 383 | 227 | 8 | 25 | 392 | 60 | 432 | 4.12e-65 | 214 |
| MS.gene012709.t1 | MTR_5g093520 | 32.817 | 387 | 227 | 11 | 6 | 372 | 13 | 386 | 6.13e-59 | 197 |
| MS.gene012709.t1 | MTR_8g028075 | 37.766 | 188 | 104 | 5 | 188 | 371 | 375 | 553 | 8.84e-31 | 124 |
| MS.gene012709.t1 | MTR_7g098270 | 34.921 | 189 | 95 | 3 | 4 | 192 | 7 | 167 | 9.51e-28 | 110 |
| MS.gene012709.t1 | MTR_8g011650 | 34.021 | 194 | 121 | 5 | 1 | 194 | 8 | 194 | 2.31e-25 | 103 |
| MS.gene012709.t1 | MTR_7g117375 | 27.632 | 304 | 195 | 9 | 87 | 384 | 101 | 385 | 3.84e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012709.t1 | AT5G47530 | 53.281 | 381 | 162 | 7 | 14 | 388 | 16 | 386 | 2.97e-136 | 395 |
| MS.gene012709.t1 | AT4G17280 | 50.254 | 394 | 175 | 7 | 1 | 386 | 10 | 390 | 1.47e-130 | 381 |
| MS.gene012709.t1 | AT5G35735 | 46.766 | 402 | 191 | 8 | 5 | 395 | 9 | 398 | 1.47e-116 | 345 |
| MS.gene012709.t1 | AT3G25290 | 43.733 | 375 | 191 | 8 | 15 | 378 | 18 | 383 | 1.35e-103 | 312 |
| MS.gene012709.t1 | AT3G25290 | 43.733 | 375 | 191 | 8 | 15 | 378 | 18 | 383 | 1.35e-103 | 312 |
| MS.gene012709.t1 | AT4G12980 | 43.511 | 393 | 200 | 8 | 2 | 382 | 6 | 388 | 5.99e-99 | 300 |
| MS.gene012709.t1 | AT3G59070 | 40.633 | 379 | 199 | 11 | 3 | 367 | 6 | 372 | 6.16e-83 | 261 |
| MS.gene012709.t1 | AT2G04850 | 35.789 | 380 | 219 | 9 | 29 | 392 | 27 | 397 | 5.65e-69 | 223 |
| MS.gene012709.t1 | AT5G48750 | 42.979 | 235 | 124 | 5 | 17 | 247 | 26 | 254 | 8.39e-57 | 187 |
| MS.gene012709.t1 | AT3G07570 | 29.444 | 360 | 193 | 13 | 4 | 335 | 9 | 335 | 9.75e-30 | 118 |
| MS.gene012709.t1 | AT3G61750 | 34.946 | 186 | 113 | 4 | 167 | 352 | 100 | 277 | 9.43e-29 | 114 |
| MS.gene012709.t1 | AT3G61750 | 34.946 | 186 | 113 | 4 | 167 | 352 | 177 | 354 | 2.54e-28 | 115 |
| MS.gene012709.t1 | AT3G07390 | 33.679 | 193 | 117 | 6 | 9 | 199 | 36 | 219 | 3.03e-23 | 98.6 |
| MS.gene012709.t1 | AT3G07390 | 38.182 | 110 | 63 | 3 | 15 | 123 | 40 | 145 | 7.41e-16 | 75.1 |
| MS.gene012709.t1 | AT5G54830 | 26.842 | 190 | 118 | 7 | 160 | 342 | 648 | 823 | 3.10e-11 | 65.9 |
Find 103 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGTTATCCTGTTTC+TGG | 0.137764 | 8.1:+1180266 | MS.gene012709:CDS |
| CATGCTTACATTGGTATTAT+TGG | 0.155934 | 8.1:+1181486 | MS.gene012709:CDS |
| GAAGTCTTGGATCTTGTTTC+TGG | 0.179617 | 8.1:+1180449 | MS.gene012709:CDS |
| GCCTACATAGTTGGATTATC+TGG | 0.214774 | 8.1:+1181195 | MS.gene012709:CDS |
| CATTGGTATTATTGGTGCTT+TGG | 0.218211 | 8.1:+1181494 | MS.gene012709:CDS |
| CCAAGACTTCCTTAGAGTTT+TGG | 0.257990 | 8.1:-1180436 | None:intergenic |
| GTTTGTAATGCTAATGCTTA+TGG | 0.273236 | 8.1:-1181403 | None:intergenic |
| ATGTTTGAAGTATATGCTTT+TGG | 0.274313 | 8.1:-1180212 | None:intergenic |
| ATTGGTATTATTGGTGCTTT+GGG | 0.280623 | 8.1:+1181495 | MS.gene012709:CDS |
| GAACAATAGCAAGTGCTCTA+TGG | 0.301053 | 8.1:-1181272 | None:intergenic |
| TCCAAATGGAACAACCTCTT+TGG | 0.315874 | 8.1:+1180343 | MS.gene012709:CDS |
| AAGACTTCAGATGGTGTTAA+TGG | 0.319234 | 8.1:+1181585 | MS.gene012709:CDS |
| CTGGAATAACTGCAACAAAT+AGG | 0.325023 | 8.1:+1180096 | MS.gene012709:CDS |
| TATACTTACTATGGCTTAAA+GGG | 0.330924 | 8.1:-1181631 | None:intergenic |
| CTTTGTTGTTTGAGAATGTT+TGG | 0.332596 | 8.1:-1179977 | None:intergenic |
| ATAGTTGGATTATCTGGTTT+TGG | 0.338557 | 8.1:+1181201 | MS.gene012709:CDS |
| CTCAACTTATGGTCTTTGTT+TGG | 0.344950 | 8.1:-1181339 | None:intergenic |
| TCCAGTAAAATCTCAACTTA+TGG | 0.345086 | 8.1:-1181350 | None:intergenic |
| CAACAAATAGGTGGGTTGCT+TGG | 0.346817 | 8.1:+1180108 | MS.gene012709:CDS |
| AAGGGTGCTGCTTGGATTGA+TGG | 0.347392 | 8.1:-1180132 | None:intergenic |
| ACCAAAGAGGTTGTTCCATT+TGG | 0.348727 | 8.1:-1180344 | None:intergenic |
| GCTTGTGCTCCGATCATGGC+TGG | 0.356922 | 8.1:-1180158 | None:intergenic |
| TAGGGGATCGTTACAAGAAC+TGG | 0.360418 | 8.1:+1181460 | MS.gene012709:CDS |
| ACCAATCCCACTTGCAGCTT+GGG | 0.378912 | 8.1:-1180477 | None:intergenic |
| AACAAATAGGTGGGTTGCTT+GGG | 0.381341 | 8.1:+1180109 | MS.gene012709:CDS |
| CAAGTCTCTGCCTACATAGT+TGG | 0.397780 | 8.1:+1181186 | MS.gene012709:CDS |
| AATATCTACCACCACGTTGT+AGG | 0.399297 | 8.1:+1181372 | MS.gene012709:CDS |
| TTTCAAAGGGTTTGAAGCAT+TGG | 0.401125 | 8.1:+1181428 | MS.gene012709:CDS |
| TGGTTCATGTATGGCAAGAT+GGG | 0.403428 | 8.1:+1180363 | MS.gene012709:CDS |
| TTGGTTCATGTATGGCAAGA+TGG | 0.409548 | 8.1:+1180362 | MS.gene012709:CDS |
| ATCTTCTCACCAAAACTCTA+AGG | 0.410472 | 8.1:+1180427 | MS.gene012709:CDS |
| TTCAAAGGGTTTGAAGCATT+GGG | 0.410583 | 8.1:+1181429 | MS.gene012709:CDS |
| CAACCTCTTTGGTTCATGTA+TGG | 0.419802 | 8.1:+1180354 | MS.gene012709:CDS |
| AGTTCTAAATGCAATAAGTT+GGG | 0.423172 | 8.1:+1181071 | MS.gene012709:CDS |
| TTTGGGCTTCCACTGGCTTG+TGG | 0.428919 | 8.1:-1180194 | None:intergenic |
| TGCTATTGTTCTTGTAACCT+TGG | 0.433426 | 8.1:+1181284 | MS.gene012709:CDS |
| ACCAGAAACAGGATAACTAA+TGG | 0.433626 | 8.1:-1180267 | None:intergenic |
| CCAAAACTCTAAGGAAGTCT+TGG | 0.434557 | 8.1:+1180436 | MS.gene012709:CDS |
| CAAAGCTTGTGCTCCGATCA+TGG | 0.437700 | 8.1:-1180162 | None:intergenic |
| TGGGGAATCTTGATGCCAAC+AGG | 0.450699 | 8.1:+1181090 | MS.gene012709:CDS |
| GCTGGGTCAAGGGTGCTGCT+TGG | 0.458703 | 8.1:-1180140 | None:intergenic |
| TGGTATTATTGGTGCTTTGG+GGG | 0.460113 | 8.1:+1181497 | MS.gene012709:CDS |
| GTGGCAGACAAACCAGAAAC+AGG | 0.463187 | 8.1:-1180278 | None:intergenic |
| GCTACTTTGACCCTTCCAAA+TGG | 0.468426 | 8.1:+1180329 | MS.gene012709:CDS |
| CATGATCGGAGCACAAGCTT+TGG | 0.470343 | 8.1:+1180163 | MS.gene012709:CDS |
| TCCCAAGCTGCAAGTGGGAT+TGG | 0.471818 | 8.1:+1180476 | MS.gene012709:CDS |
| AACCAATCCCACTTGCAGCT+TGG | 0.473554 | 8.1:-1180478 | None:intergenic |
| GATGGTGTTAATGGAGCAAA+TGG | 0.483049 | 8.1:+1181594 | MS.gene012709:CDS |
| ATATCTACCACCACGTTGTA+GGG | 0.487362 | 8.1:+1181373 | MS.gene012709:CDS |
| TCCGATCATGGCTGGGTCAA+GGG | 0.488469 | 8.1:-1180150 | None:intergenic |
| AACAATAGCAAGTGCTCTAT+GGG | 0.489652 | 8.1:-1181271 | None:intergenic |
| CTCCGATCATGGCTGGGTCA+AGG | 0.489759 | 8.1:-1180151 | None:intergenic |
| GGTATTATTGGTGCTTTGGG+GGG | 0.491041 | 8.1:+1181498 | MS.gene012709:CDS |
| TCAAATCCGCAGACCCTGCT+TGG | 0.493088 | 8.1:+1181142 | MS.gene012709:CDS |
| ACCCTTGACCCAGCCATGAT+CGG | 0.495736 | 8.1:+1180149 | MS.gene012709:CDS |
| AAGAGGTTGTTCCATTTGGA+AGG | 0.497441 | 8.1:-1180340 | None:intergenic |
| GATCGGAGCACAAGCTTTGG+TGG | 0.497818 | 8.1:+1180166 | MS.gene012709:CDS |
| GAGTTCTAAATGCAATAAGT+TGG | 0.504686 | 8.1:+1181070 | MS.gene012709:CDS |
| AGTAATAGCAAGGTATTTGA+AGG | 0.512011 | 8.1:+1181116 | MS.gene012709:CDS |
| TTGGTATTATTGGTGCTTTG+GGG | 0.518620 | 8.1:+1181496 | MS.gene012709:CDS |
| ATGTGAAGATAGAACCAAGC+AGG | 0.523540 | 8.1:-1181156 | None:intergenic |
| TTTGGTACTGGTCTCAAACT+CGG | 0.532870 | 8.1:+1181219 | MS.gene012709:CDS |
| TTTGGAAGCTTACACGTGGA+TGG | 0.533911 | 8.1:+1181533 | MS.gene012709:CDS |
| AGTTAACCTCGTACCTCCAC+TGG | 0.539955 | 8.1:+1180027 | MS.gene012709:CDS |
| TCCACGTGTAAGCTTCCAAA+AGG | 0.545026 | 8.1:-1181530 | None:intergenic |
| CTTGTGCTCCGATCATGGCT+GGG | 0.548227 | 8.1:-1180157 | None:intergenic |
| GAATAACTGCAACAAATAGG+TGG | 0.552346 | 8.1:+1180099 | MS.gene012709:CDS |
| CTTGCTATTACTGCTCCTGT+TGG | 0.560569 | 8.1:-1181105 | None:intergenic |
| GATTCATGGCTATGTTCTTG+AGG | 0.562296 | 8.1:-1180407 | None:intergenic |
| AACTGGAAGCATGCTTACAT+TGG | 0.570819 | 8.1:+1181477 | MS.gene012709:CDS |
| GGTTCATGTATGGCAAGATG+GGG | 0.572736 | 8.1:+1180364 | MS.gene012709:CDS |
| ACCAGATAATCCAACTATGT+AGG | 0.573850 | 8.1:-1181196 | None:intergenic |
| GTTCTAAATGCAATAAGTTG+GGG | 0.579470 | 8.1:+1181072 | MS.gene012709:CDS |
| AGAGGTTGTTCCATTTGGAA+GGG | 0.580852 | 8.1:-1180339 | None:intergenic |
| GCAGAGAACAAGACTTCAGA+TGG | 0.581792 | 8.1:+1181576 | MS.gene012709:CDS |
| CAAACTCGGTAGTGATTCAG+AGG | 0.584270 | 8.1:+1181233 | MS.gene012709:CDS |
| ACATGATTGGGTTTGAGCTG+AGG | 0.587718 | 8.1:-1179949 | None:intergenic |
| CATCATGTTGAGGCTTACGT+TGG | 0.594673 | 8.1:+1179893 | None:intergenic |
| AATCCCACTTGCAGCTTGGG+AGG | 0.599310 | 8.1:-1180474 | None:intergenic |
| GGTACCTCCCAAGCTGCAAG+TGG | 0.604136 | 8.1:+1180470 | MS.gene012709:CDS |
| GTGGCTATTCCACAAGCCAG+TGG | 0.609291 | 8.1:+1180185 | MS.gene012709:CDS |
| AATAACTGCAACAAATAGGT+GGG | 0.611835 | 8.1:+1180100 | MS.gene012709:CDS |
| TTGTTTCATCGTATGACCAG+TGG | 0.615698 | 8.1:-1180043 | None:intergenic |
| ACAAGCACACGGTTGCAAGA+AGG | 0.618408 | 8.1:+1180242 | MS.gene012709:CDS |
| GACATAGCATACATACACAC+TGG | 0.619673 | 8.1:+1180077 | MS.gene012709:CDS |
| GTTAATGGAGCAAATGGCTA+TGG | 0.624982 | 8.1:+1181600 | MS.gene012709:CDS |
| AAACACTTGAAGAGTTGCCA+AGG | 0.625483 | 8.1:-1181301 | None:intergenic |
| TTGCCATACATGAACCAAAG+AGG | 0.632447 | 8.1:-1180357 | None:intergenic |
| CAACAGGAGCAGTAATAGCA+AGG | 0.639419 | 8.1:+1181106 | MS.gene012709:CDS |
| TTTCATCGTATGACCAGTGG+AGG | 0.641448 | 8.1:-1180040 | None:intergenic |
| TGTGAAGATAGAACCAAGCA+GGG | 0.656540 | 8.1:-1181155 | None:intergenic |
| ATAGAACCAAGCAGGGTCTG+CGG | 0.662307 | 8.1:-1181148 | None:intergenic |
| AACCTCATTATTCTGATACG+TGG | 0.667735 | 8.1:-1180297 | None:intergenic |
| GTACCTCCCAAGCTGCAAGT+GGG | 0.668450 | 8.1:+1180471 | MS.gene012709:CDS |
| TGGAGGTACGAGGTTAACTG+TGG | 0.671548 | 8.1:-1180023 | None:intergenic |
| TGGTCATACGATGAAACAAG+TGG | 0.675142 | 8.1:+1180047 | MS.gene012709:CDS |
| TGCCACGTATCAGAATAATG+AGG | 0.677711 | 8.1:+1180295 | MS.gene012709:CDS |
| ACATTGTAGACACAAGCACA+CGG | 0.692248 | 8.1:+1180231 | MS.gene012709:CDS |
| TATGCTACTCAAAACACACA+AGG | 0.702224 | 8.1:-1179916 | None:intergenic |
| GTATGACCAGTGGAGGTACG+AGG | 0.705546 | 8.1:-1180033 | None:intergenic |
| AAACTCGGTAGTGATTCAGA+GGG | 0.706199 | 8.1:+1181234 | MS.gene012709:CDS |
| TAACATACCCTACAACGTGG+TGG | 0.753877 | 8.1:-1181380 | None:intergenic |
| TGGTAACATACCCTACAACG+TGG | 0.797593 | 8.1:-1181383 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTAAATAAAGTTCT+AGG | - | chr8.1:1180791-1180810 | None:intergenic | 10.0% |
| !! | AAATATTTATAATGATCCAA+CGG | - | chr8.1:1180587-1180606 | None:intergenic | 15.0% |
| !! | CACGACATAATTTATAAAAT+TGG | - | chr8.1:1180967-1180986 | None:intergenic | 20.0% |
| !! | GTGTTAGTACTTTATAATTA+GGG | + | chr8.1:1180984-1181003 | MS.gene012709:intron | 20.0% |
| ! | AACAGGATAATACAATCATA+TGG | - | chr8.1:1180839-1180858 | None:intergenic | 25.0% |
| ! | ACTCTCTATTATCAAGAATT+TGG | - | chr8.1:1180712-1180731 | None:intergenic | 25.0% |
| ! | CGTGTTAGTACTTTATAATT+AGG | + | chr8.1:1180983-1181002 | MS.gene012709:intron | 25.0% |
| ! | TATGATTGTATTATCCTGTT+TGG | + | chr8.1:1180839-1180858 | MS.gene012709:intron | 25.0% |
| !! | ATTCTTAATTTTCAGACACA+TGG | + | chr8.1:1181048-1181067 | MS.gene012709:intron | 25.0% |
| !! | TGTAAGTTCATACTGTTTTA+AGG | + | chr8.1:1180520-1180539 | MS.gene012709:intron | 25.0% |
| !!! | AGTTCTAAATGCAATAAGTT+GGG | + | chr8.1:1181071-1181090 | MS.gene012709:CDS | 25.0% |
| !!! | ATGTTTGAAGTATATGCTTT+TGG | - | chr8.1:1180215-1180234 | None:intergenic | 25.0% |
| !!! | ATGTTTGGTTTTTACATGAT+TGG | - | chr8.1:1179965-1179984 | None:intergenic | 25.0% |
| !!! | TGTTTGAAGTATATGCTTTT+GGG | - | chr8.1:1180214-1180233 | None:intergenic | 25.0% |
| !!! | TGTTTGGTTTTTACATGATT+GGG | - | chr8.1:1179964-1179983 | None:intergenic | 25.0% |
| AATAACTGCAACAAATAGGT+GGG | + | chr8.1:1180100-1180119 | MS.gene012709:CDS | 30.0% | |
| ATCATTATGTGTTTCGATTG+TGG | + | chr8.1:1180732-1180751 | MS.gene012709:intron | 30.0% | |
| CATGCTTACATTGGTATTAT+TGG | + | chr8.1:1181486-1181505 | MS.gene012709:CDS | 30.0% | |
| GTTTGTAATGCTAATGCTTA+TGG | - | chr8.1:1181406-1181425 | None:intergenic | 30.0% | |
| TCCAGTAAAATCTCAACTTA+TGG | - | chr8.1:1181353-1181372 | None:intergenic | 30.0% | |
| TGGTCATAATGTAATTGCAT+AGG | + | chr8.1:1180752-1180771 | MS.gene012709:intron | 30.0% | |
| ! | ACACCTCAAATTTAAAGTGT+CGG | - | chr8.1:1180878-1180897 | None:intergenic | 30.0% |
| ! | AGCATTACAAACGTTTTCAA+AGG | + | chr8.1:1181414-1181433 | MS.gene012709:CDS | 30.0% |
| ! | AGTAATAGCAAGGTATTTGA+AGG | + | chr8.1:1181116-1181135 | MS.gene012709:CDS | 30.0% |
| ! | ATTGGTATTATTGGTGCTTT+GGG | + | chr8.1:1181495-1181514 | MS.gene012709:CDS | 30.0% |
| ! | GAATTTTTACACAAAACCGT+TGG | + | chr8.1:1180568-1180587 | MS.gene012709:intron | 30.0% |
| ! | GCATTACAAACGTTTTCAAA+GGG | + | chr8.1:1181415-1181434 | MS.gene012709:CDS | 30.0% |
| ! | GTTCTAAATGCAATAAGTTG+GGG | + | chr8.1:1181072-1181091 | MS.gene012709:CDS | 30.0% |
| !! | AAAGTTCTAGGATTGTGATA+TGG | - | chr8.1:1180779-1180798 | None:intergenic | 30.0% |
| !! | ACCATAAGTTGAGATTTTAC+TGG | + | chr8.1:1181349-1181368 | MS.gene012709:CDS | 30.0% |
| !! | ATAGTTGGATTATCTGGTTT+TGG | + | chr8.1:1181201-1181220 | MS.gene012709:CDS | 30.0% |
| !! | CTTTGTTGTTTGAGAATGTT+TGG | - | chr8.1:1179980-1179999 | None:intergenic | 30.0% |
| !! | GAGTTCTAAATGCAATAAGT+TGG | + | chr8.1:1181070-1181089 | MS.gene012709:CDS | 30.0% |
| !!! | AAGTGTTTGCTCTATTTTTG+AGG | + | chr8.1:1181316-1181335 | MS.gene012709:CDS | 30.0% |
| AACAATAGCAAGTGCTCTAT+GGG | - | chr8.1:1181274-1181293 | None:intergenic | 35.0% | |
| AACCTCATTATTCTGATACG+TGG | - | chr8.1:1180300-1180319 | None:intergenic | 35.0% | |
| ACACCGACACTTTAAATTTG+AGG | + | chr8.1:1180872-1180891 | MS.gene012709:intron | 35.0% | |
| ACCAGAAACAGGATAACTAA+TGG | - | chr8.1:1180270-1180289 | None:intergenic | 35.0% | |
| ACCAGATAATCCAACTATGT+AGG | - | chr8.1:1181199-1181218 | None:intergenic | 35.0% | |
| ATCTTCTCACCAAAACTCTA+AGG | + | chr8.1:1180427-1180446 | MS.gene012709:CDS | 35.0% | |
| CAACTTGGTACTTACATATG+TGG | + | chr8.1:1180938-1180957 | MS.gene012709:intron | 35.0% | |
| CACATATGTAAGTACCAAGT+TGG | - | chr8.1:1180940-1180959 | None:intergenic | 35.0% | |
| CTCAACTTATGGTCTTTGTT+TGG | - | chr8.1:1181342-1181361 | None:intergenic | 35.0% | |
| CTGGAATAACTGCAACAAAT+AGG | + | chr8.1:1180096-1180115 | MS.gene012709:CDS | 35.0% | |
| GAATAACTGCAACAAATAGG+TGG | + | chr8.1:1180099-1180118 | MS.gene012709:CDS | 35.0% | |
| TATGCTACTCAAAACACACA+AGG | - | chr8.1:1179919-1179938 | None:intergenic | 35.0% | |
| TCCATTAGTTATCCTGTTTC+TGG | + | chr8.1:1180266-1180285 | MS.gene012709:CDS | 35.0% | |
| TGCTATTGTTCTTGTAACCT+TGG | + | chr8.1:1181284-1181303 | MS.gene012709:CDS | 35.0% | |
| ! | AAGACTTCAGATGGTGTTAA+TGG | + | chr8.1:1181585-1181604 | MS.gene012709:CDS | 35.0% |
| ! | CATTGGTATTATTGGTGCTT+TGG | + | chr8.1:1181494-1181513 | MS.gene012709:CDS | 35.0% |
| ! | TTCAAAGGGTTTGAAGCATT+GGG | + | chr8.1:1181429-1181448 | MS.gene012709:CDS | 35.0% |
| ! | TTGGTATTATTGGTGCTTTG+GGG | + | chr8.1:1181496-1181515 | MS.gene012709:CDS | 35.0% |
| ! | TTTCAAAGGGTTTGAAGCAT+TGG | + | chr8.1:1181428-1181447 | MS.gene012709:CDS | 35.0% |
| !! | AGTTTTGGTGAGAAGATTCA+TGG | - | chr8.1:1180424-1180443 | None:intergenic | 35.0% |
| !!! | AAGCATTGGGAGATTTTGTA+GGG | + | chr8.1:1181442-1181461 | MS.gene012709:CDS | 35.0% |
| AAACACTTGAAGAGTTGCCA+AGG | - | chr8.1:1181304-1181323 | None:intergenic | 40.0% | |
| AAACTCGGTAGTGATTCAGA+GGG | + | chr8.1:1181234-1181253 | MS.gene012709:CDS | 40.0% | |
| AAGAGGTTGTTCCATTTGGA+AGG | - | chr8.1:1180343-1180362 | None:intergenic | 40.0% | |
| AATATCTACCACCACGTTGT+AGG | + | chr8.1:1181372-1181391 | MS.gene012709:CDS | 40.0% | |
| ACATTGTAGACACAAGCACA+CGG | + | chr8.1:1180231-1180250 | MS.gene012709:CDS | 40.0% | |
| ACCAAAGAGGTTGTTCCATT+TGG | - | chr8.1:1180347-1180366 | None:intergenic | 40.0% | |
| AGAGGTTGTTCCATTTGGAA+GGG | - | chr8.1:1180342-1180361 | None:intergenic | 40.0% | |
| ATATCTACCACCACGTTGTA+GGG | + | chr8.1:1181373-1181392 | MS.gene012709:CDS | 40.0% | |
| ATGTGAAGATAGAACCAAGC+AGG | - | chr8.1:1181159-1181178 | None:intergenic | 40.0% | |
| GAACAATAGCAAGTGCTCTA+TGG | - | chr8.1:1181275-1181294 | None:intergenic | 40.0% | |
| GACATAGCATACATACACAC+TGG | + | chr8.1:1180077-1180096 | MS.gene012709:CDS | 40.0% | |
| GATTCATGGCTATGTTCTTG+AGG | - | chr8.1:1180410-1180429 | None:intergenic | 40.0% | |
| GCCTACATAGTTGGATTATC+TGG | + | chr8.1:1181195-1181214 | MS.gene012709:CDS | 40.0% | |
| GTTAATGGAGCAAATGGCTA+TGG | + | chr8.1:1181600-1181619 | MS.gene012709:CDS | 40.0% | |
| TCCAAATGGAACAACCTCTT+TGG | + | chr8.1:1180343-1180362 | MS.gene012709:CDS | 40.0% | |
| TGCCACGTATCAGAATAATG+AGG | + | chr8.1:1180295-1180314 | MS.gene012709:CDS | 40.0% | |
| TGGTCATACGATGAAACAAG+TGG | + | chr8.1:1180047-1180066 | MS.gene012709:CDS | 40.0% | |
| TGGTTCATGTATGGCAAGAT+GGG | + | chr8.1:1180363-1180382 | MS.gene012709:CDS | 40.0% | |
| TGTGAAGATAGAACCAAGCA+GGG | - | chr8.1:1181158-1181177 | None:intergenic | 40.0% | |
| TTGCCATACATGAACCAAAG+AGG | - | chr8.1:1180360-1180379 | None:intergenic | 40.0% | |
| TTGGTTCATGTATGGCAAGA+TGG | + | chr8.1:1180362-1180381 | MS.gene012709:CDS | 40.0% | |
| TTGTTTCATCGTATGACCAG+TGG | - | chr8.1:1180046-1180065 | None:intergenic | 40.0% | |
| ! | AACTGGAAGCATGCTTACAT+TGG | + | chr8.1:1181477-1181496 | MS.gene012709:CDS | 40.0% |
| ! | AGGGACGATTCTTGTTTGAT+TGG | + | chr8.1:1181003-1181022 | MS.gene012709:intron | 40.0% |
| ! | CAACCTCTTTGGTTCATGTA+TGG | + | chr8.1:1180354-1180373 | MS.gene012709:CDS | 40.0% |
| ! | CCAAAACTCTAAGGAAGTCT+TGG | + | chr8.1:1180436-1180455 | MS.gene012709:CDS | 40.0% |
| ! | CCAAGACTTCCTTAGAGTTT+TGG | - | chr8.1:1180439-1180458 | None:intergenic | 40.0% |
| ! | GAAGTCTTGGATCTTGTTTC+TGG | + | chr8.1:1180449-1180468 | MS.gene012709:CDS | 40.0% |
| ! | GATGGTGTTAATGGAGCAAA+TGG | + | chr8.1:1181594-1181613 | MS.gene012709:CDS | 40.0% |
| ! | TGGTATTATTGGTGCTTTGG+GGG | + | chr8.1:1181497-1181516 | MS.gene012709:CDS | 40.0% |
| !! | AACAAATAGGTGGGTTGCTT+GGG | + | chr8.1:1180109-1180128 | MS.gene012709:CDS | 40.0% |
| !! | AGCATTGGGAGATTTTGTAG+GGG | + | chr8.1:1181443-1181462 | MS.gene012709:CDS | 40.0% |
| !! | TGTAAGTACCAAGTTGGTGT+TGG | - | chr8.1:1180934-1180953 | None:intergenic | 40.0% |
| !! | TTTGGTACTGGTCTCAAACT+CGG | + | chr8.1:1181219-1181238 | MS.gene012709:CDS | 40.0% |
| !!! | GAAGCATTGGGAGATTTTGT+AGG | + | chr8.1:1181441-1181460 | MS.gene012709:CDS | 40.0% |
| !!! | GGATTATCTGGTTTTGGTAC+TGG | + | chr8.1:1181207-1181226 | MS.gene012709:CDS | 40.0% |
| ACATGATTGGGTTTGAGCTG+AGG | - | chr8.1:1179952-1179971 | None:intergenic | 45.0% | |
| CAAACTCGGTAGTGATTCAG+AGG | + | chr8.1:1181233-1181252 | MS.gene012709:CDS | 45.0% | |
| CAACAGGAGCAGTAATAGCA+AGG | + | chr8.1:1181106-1181125 | MS.gene012709:CDS | 45.0% | |
| CAAGTCTCTGCCTACATAGT+TGG | + | chr8.1:1181186-1181205 | MS.gene012709:CDS | 45.0% | |
| GCAGAGAACAAGACTTCAGA+TGG | + | chr8.1:1181576-1181595 | MS.gene012709:CDS | 45.0% | |
| GGTTCATGTATGGCAAGATG+GGG | + | chr8.1:1180364-1180383 | MS.gene012709:CDS | 45.0% | |
| GTGTCGCATAGATACCAAAC+AGG | - | chr8.1:1180856-1180875 | None:intergenic | 45.0% | |
| TAACATACCCTACAACGTGG+TGG | - | chr8.1:1181383-1181402 | None:intergenic | 45.0% | |
| TAGGGGATCGTTACAAGAAC+TGG | + | chr8.1:1181460-1181479 | MS.gene012709:CDS | 45.0% | |
| TCCACGTGTAAGCTTCCAAA+AGG | - | chr8.1:1181533-1181552 | None:intergenic | 45.0% | |
| TGGTAACATACCCTACAACG+TGG | - | chr8.1:1181386-1181405 | None:intergenic | 45.0% | |
| TTTCATCGTATGACCAGTGG+AGG | - | chr8.1:1180043-1180062 | None:intergenic | 45.0% | |
| TTTGGAAGCTTACACGTGGA+TGG | + | chr8.1:1181533-1181552 | MS.gene012709:CDS | 45.0% | |
| ! | ATATGCTTTTGGGCTTCCAC+TGG | - | chr8.1:1180204-1180223 | None:intergenic | 45.0% |
| ! | GCTACTTTGACCCTTCCAAA+TGG | + | chr8.1:1180329-1180348 | MS.gene012709:CDS | 45.0% |
| ! | GGTATTATTGGTGCTTTGGG+GGG | + | chr8.1:1181498-1181517 | MS.gene012709:CDS | 45.0% |
| !! | AGTACCAAGTTGGTGTTGGT+CGG | - | chr8.1:1180930-1180949 | None:intergenic | 45.0% |
| !! | CAACAAATAGGTGGGTTGCT+TGG | + | chr8.1:1180108-1180127 | MS.gene012709:CDS | 45.0% |
| !! | CTTGCTATTACTGCTCCTGT+TGG | - | chr8.1:1181108-1181127 | None:intergenic | 45.0% |
| !! | TCCTTTTGGAAGCTTACACG+TGG | + | chr8.1:1181529-1181548 | MS.gene012709:CDS | 45.0% |
| AACCAATCCCACTTGCAGCT+TGG | - | chr8.1:1180481-1180500 | None:intergenic | 50.0% | |
| ACAAGCACACGGTTGCAAGA+AGG | + | chr8.1:1180242-1180261 | MS.gene012709:CDS | 50.0% | |
| ACCAATCCCACTTGCAGCTT+GGG | - | chr8.1:1180480-1180499 | None:intergenic | 50.0% | |
| AGTTAACCTCGTACCTCCAC+TGG | + | chr8.1:1180027-1180046 | MS.gene012709:CDS | 50.0% | |
| ATAGAACCAAGCAGGGTCTG+CGG | - | chr8.1:1181151-1181170 | None:intergenic | 50.0% | |
| CAAAGCTTGTGCTCCGATCA+TGG | - | chr8.1:1180165-1180184 | None:intergenic | 50.0% | |
| CATGATCGGAGCACAAGCTT+TGG | + | chr8.1:1180163-1180182 | MS.gene012709:CDS | 50.0% | |
| CGGACTACACTAACACGTGT+TGG | - | chr8.1:1180910-1180929 | None:intergenic | 50.0% | |
| GTGGCAGACAAACCAGAAAC+AGG | - | chr8.1:1180281-1180300 | None:intergenic | 50.0% | |
| TAGTCCGACCAACACCAACT+TGG | + | chr8.1:1180923-1180942 | MS.gene012709:intron | 50.0% | |
| TGGGGAATCTTGATGCCAAC+AGG | + | chr8.1:1181090-1181109 | MS.gene012709:CDS | 50.0% | |
| ! | TGGAGGTACGAGGTTAACTG+TGG | - | chr8.1:1180026-1180045 | None:intergenic | 50.0% |
| !! | AAGGGTGCTGCTTGGATTGA+TGG | - | chr8.1:1180135-1180154 | None:intergenic | 50.0% |
| AATCCCACTTGCAGCTTGGG+AGG | - | chr8.1:1180477-1180496 | None:intergenic | 55.0% | |
| ACCCTTGACCCAGCCATGAT+CGG | + | chr8.1:1180149-1180168 | MS.gene012709:CDS | 55.0% | |
| CTTGTGCTCCGATCATGGCT+GGG | - | chr8.1:1180160-1180179 | None:intergenic | 55.0% | |
| GTACCTCCCAAGCTGCAAGT+GGG | + | chr8.1:1180471-1180490 | MS.gene012709:CDS | 55.0% | |
| GTGGCTATTCCACAAGCCAG+TGG | + | chr8.1:1180185-1180204 | MS.gene012709:CDS | 55.0% | |
| TCAAATCCGCAGACCCTGCT+TGG | + | chr8.1:1181142-1181161 | MS.gene012709:CDS | 55.0% | |
| TCCCAAGCTGCAAGTGGGAT+TGG | + | chr8.1:1180476-1180495 | MS.gene012709:CDS | 55.0% | |
| TCCGATCATGGCTGGGTCAA+GGG | - | chr8.1:1180153-1180172 | None:intergenic | 55.0% | |
| ! | GATCGGAGCACAAGCTTTGG+TGG | + | chr8.1:1180166-1180185 | MS.gene012709:CDS | 55.0% |
| ! | GTATGACCAGTGGAGGTACG+AGG | - | chr8.1:1180036-1180055 | None:intergenic | 55.0% |
| !! | TTTGGGCTTCCACTGGCTTG+TGG | - | chr8.1:1180197-1180216 | None:intergenic | 55.0% |
| CTCCGATCATGGCTGGGTCA+AGG | - | chr8.1:1180154-1180173 | None:intergenic | 60.0% | |
| GCTTGTGCTCCGATCATGGC+TGG | - | chr8.1:1180161-1180180 | None:intergenic | 60.0% | |
| GGTACCTCCCAAGCTGCAAG+TGG | + | chr8.1:1180470-1180489 | MS.gene012709:CDS | 60.0% | |
| !!! | GGGGGGCATTGCTGTCCTTT+TGG | + | chr8.1:1181515-1181534 | MS.gene012709:CDS | 60.0% |
| !! | GCTGGGTCAAGGGTGCTGCT+TGG | - | chr8.1:1180143-1180162 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 1179897 | 1181638 | 1179897 | ID=MS.gene012709 |
| chr8.1 | mRNA | 1179897 | 1181638 | 1179897 | ID=MS.gene012709.t1;Parent=MS.gene012709 |
| chr8.1 | exon | 1179897 | 1180520 | 1179897 | ID=MS.gene012709.t1.exon1;Parent=MS.gene012709.t1 |
| chr8.1 | CDS | 1179897 | 1180520 | 1179897 | ID=cds.MS.gene012709.t1;Parent=MS.gene012709.t1 |
| chr8.1 | exon | 1181063 | 1181638 | 1181063 | ID=MS.gene012709.t1.exon2;Parent=MS.gene012709.t1 |
| chr8.1 | CDS | 1181063 | 1181638 | 1181063 | ID=cds.MS.gene012709.t1;Parent=MS.gene012709.t1 |
| Gene Sequence |
| Protein sequence |
