AlfalfaGEDB | MS.gene96299

M. sativa cultivar XinJiangDaYe / MS.gene96299

KEGG: -
GO: -
PFAM: PF03188.19 PF04526.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96299.t1	XP_003610567.1	97.2	399	11	0	1	399	1	399	3.70E-220	773.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96299.t1	Q8VYH6	51.0	390	174	7	2	385	11	389	1.6e-102	374.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96299.t1	G7JLR1	97.2	399	11	0	1	399	1	399	2.7e-220	773.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene96299	-0.835203	1.92E-56	-1.69E-46
MS.gene049222	MS.gene96299	-0.816866	4.43E-52	-1.69E-46
MS.gene049259	MS.gene96299	0.801926	7.15E-49	-1.69E-46
MS.gene049265	MS.gene96299	0.801811	7.55E-49	-1.69E-46
MS.gene049281	MS.gene96299	0.814173	1.76E-51	-1.69E-46
MS.gene049285	MS.gene96299	-0.809527	1.81E-50	-1.69E-46
MS.gene04932	MS.gene96299	0.818973	1.48E-52	-1.69E-46
MS.gene049320	MS.gene96299	-0.825468	4.61E-54	-1.69E-46
MS.gene049402	MS.gene96299	0.821163	4.67E-53	-1.69E-46
MS.gene049549	MS.gene96299	0.810754	9.85E-51	-1.69E-46

Showing 1 to 10 of 181 entries

Previous1 2 3 4 5…19Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene020907	MS.gene96299	PPI
MS.gene38073	MS.gene96299	PPI
MS.gene39320	MS.gene96299	PPI
MS.gene45410	MS.gene96299	PPI
MS.gene81207	MS.gene96299	PPI
MS.gene96299	MS.gene38189	PPI
MS.gene96299	MS.gene020234	PPI

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96299.t1	MTR_4g133620	97.243	399	11	0	1	399	1	399	0.0	804
MS.gene96299.t1	MTR_2g026080	70.321	374	107	3	25	396	29	400	0.0	532
MS.gene96299.t1	MTR_7g051910	42.448	384	196	8	15	389	15	382	6.41e-97	295
MS.gene96299.t1	MTR_3g058510	41.713	362	196	8	25	381	26	377	9.67e-87	268
MS.gene96299.t1	MTR_8g009880	32.117	411	238	10	6	397	9	397	1.99e-65	214
MS.gene96299.t1	MTR_5g097620	34.204	383	227	8	25	392	60	432	4.12e-65	214
MS.gene96299.t1	MTR_5g093520	32.817	387	227	11	6	372	13	386	6.13e-59	197
MS.gene96299.t1	MTR_8g028075	37.766	188	104	5	188	371	375	553	8.84e-31	124
MS.gene96299.t1	MTR_7g098270	34.921	189	95	3	4	192	7	167	9.51e-28	110
MS.gene96299.t1	MTR_8g011650	34.021	194	121	5	1	194	8	194	2.31e-25	103

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96299.t1	AT5G47530	53.281	381	162	7	14	388	16	386	2.97e-136	395
MS.gene96299.t1	AT4G17280	50.254	394	175	7	1	386	10	390	1.47e-130	381
MS.gene96299.t1	AT5G35735	46.766	402	191	8	5	395	9	398	1.47e-116	345
MS.gene96299.t1	AT3G25290	43.733	375	191	8	15	378	18	383	1.35e-103	312
MS.gene96299.t1	AT3G25290	43.733	375	191	8	15	378	18	383	1.35e-103	312
MS.gene96299.t1	AT4G12980	43.511	393	200	8	2	382	6	388	5.99e-99	300
MS.gene96299.t1	AT3G59070	40.633	379	199	11	3	367	6	372	6.16e-83	261
MS.gene96299.t1	AT2G04850	35.789	380	219	9	29	392	27	397	5.65e-69	223
MS.gene96299.t1	AT5G48750	42.979	235	124	5	17	247	26	254	8.39e-57	187
MS.gene96299.t1	AT3G07570	29.444	360	193	13	4	335	9	335	9.75e-30	118

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 103 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTTGAAGAGTTGCCA+AGG	0.625483	8.4:-1216852	None:intergenic
AAACTCGGTAGTGATTCAGA+GGG	0.706199	8.4:+1216785	MS.gene96299:CDS
AACAAATAGGTGGGTTGCTT+GGG	0.381341	8.4:+1215660	MS.gene96299:CDS
AACAATAGCAAGTGCTCTAT+GGG	0.489652	8.4:-1216822	None:intergenic
AACCAATCCCACTTGCAGCT+TGG	0.473554	8.4:-1216029	None:intergenic
AACCTCATTATTCTGATACG+TGG	0.667735	8.4:-1215848	None:intergenic
AACTGGAAGCATGCTTACAT+TGG	0.570819	8.4:+1217028	MS.gene96299:CDS
AAGACTTCAGATGGTGTTAA+TGG	0.319234	8.4:+1217136	MS.gene96299:CDS
AAGAGGTTGTTCCATTTGGA+AGG	0.497441	8.4:-1215891	None:intergenic
AAGGGTGCTGCTTGGATTGA+TGG	0.347392	8.4:-1215683	None:intergenic

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAACTGCAACAAATAGGT+GGG	+	chr8.4:1215651-1215670	MS.gene96299:CDS	30.0%
ATCATTATGTGTTTCGATTG+TGG	+	chr8.4:1216283-1216302	MS.gene96299:intron	30.0%
CATGCTTACATTGGTATTAT+TGG	+	chr8.4:1217037-1217056	MS.gene96299:CDS	30.0%
GTTTGTAATGCTAATGCTTA+TGG	-	chr8.4:1216957-1216976	None:intergenic	30.0%
TCCAGTAAAATCTCAACTTA+TGG	-	chr8.4:1216904-1216923	None:intergenic	30.0%
TGGTCATAATGTAATTGCAT+AGG	+	chr8.4:1216303-1216322	MS.gene96299:intron	30.0%
AACAATAGCAAGTGCTCTAT+GGG	-	chr8.4:1216825-1216844	None:intergenic	35.0%
AACCTCATTATTCTGATACG+TGG	-	chr8.4:1215851-1215870	None:intergenic	35.0%
ACACCGACACTTTAAATTTG+AGG	+	chr8.4:1216423-1216442	MS.gene96299:intron	35.0%
ACCAGAAACAGGATAACTAA+TGG	-	chr8.4:1215821-1215840	None:intergenic	35.0%

Showing 1 to 10 of 140 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	1215448	1217189	1215448	ID=MS.gene96299
chr8.4	mRNA	1215448	1217189	1215448	ID=MS.gene96299.t1;Parent=MS.gene96299
chr8.4	exon	1215448	1216071	1215448	ID=MS.gene96299.t1.exon1;Parent=MS.gene96299.t1
chr8.4	CDS	1215448	1216071	1215448	ID=cds.MS.gene96299.t1;Parent=MS.gene96299.t1
chr8.4	exon	1216614	1217189	1216614	ID=MS.gene96299.t1.exon2;Parent=MS.gene96299.t1
chr8.4	CDS	1216614	1217189	1216614	ID=cds.MS.gene96299.t1;Parent=MS.gene96299.t1

Gene Sequence

>MS.gene96299

ATGTTGAGGCTTACGTTGGCCTTGTGTGTTTTGAGTAGCATAATTTTGACATCCTCAGCTCAAACCCAATCATGTAAAAACCAAACATTCTCAAACAACAAAGCATTCACAACATGTCGTGATCTTCCACAGTTAACCTCGTACCTCCACTGGTCATACGATGAAACAAGTGGCAAATTAGACATAGCATACATACACACTGGAATAACTGCAACAAATAGGTGGGTTGCTTGGGCCATCAATCCAAGCAGCACCCTTGACCCAGCCATGATCGGAGCACAAGCTTTGGTGGCTATTCCACAAGCCAGTGGAAGCCCAAAAGCATATACTTCAAACATTGTAGACACAAGCACACGGTTGCAAGAAGGATCCATTAGTTATCCTGTTTCTGGTTTGTCTGCCACGTATCAGAATAATGAGGTTACTATTTTTGCTACTTTGACCCTTCCAAATGGAACAACCTCTTTGGTTCATGTATGGCAAGATGGGGTTCTCTCTTCTGATACTACTCCTCAAGAACATAGCCATGAATCTTCTCACCAAAACTCTAAGGAAGTCTTGGATCTTGTTTCTGGTACCTCCCAAGCTGCAAGTGGGATTGGTTCGCGTCAAAGAAGAAGAAATGTAAGTTCATACTGTTTTAAGGATTTAATTTATAAGCACTTGCATAAGAATTTTTACACAAAACCGTTGGATCATTATAAATATTTGACTTTAATCAAATCTTTGTTAAATTCATACAAAAAATAGTGTTTCTTATTGTTGATATAGATACTTATGTCGAAACTAATATCATGTTTTCATACTCACATCCAAATTCTTGATAATAGAGAGTATCATTATGTGTTTCGATTGTGGTCATAATGTAATTGCATAGGACCATATCACAATCCTAGAACTTTATTTAAAAAATTACTTATCTAAATCTTAATTTTCACTCCATATGATTGTATTATCCTGTTTGGTATCTATGCGACACCGACACTTTAAATTTGAGGTGTGTTCAGCATCCAACACGTGTTAGTGTAGTCCGACCAACACCAACTTGGTACTTACATATGTGGCTTCCAATTTTATAAATTATGTCGTGTTAGTACTTTATAATTAGGGACGATTCTTGTTTGATTGGTATTTGATTTTAAATGATTGTTATTCTTAATTTTCAGACACATGGAGTTCTAAATGCAATAAGTTGGGGAATCTTGATGCCAACAGGAGCAGTAATAGCAAGGTATTTGAAGGTGTTCAAATCCGCAGACCCTGCTTGGTTCTATCTTCACATAACTTGTCAAGTCTCTGCCTACATAGTTGGATTATCTGGTTTTGGTACTGGTCTCAAACTCGGTAGTGATTCAGAGGGTATTACATACGACACCCATAGAGCACTTGCTATTGTTCTTGTAACCTTGGCAACTCTTCAAGTGTTTGCTCTATTTTTGAGGCCAAACAAAGACCATAAGTTGAGATTTTACTGGAATATCTACCACCACGTTGTAGGGTATGTTACCATAAGCATTAGCATTACAAACGTTTTCAAAGGGTTTGAAGCATTGGGAGATTTTGTAGGGGATCGTTACAAGAACTGGAAGCATGCTTACATTGGTATTATTGGTGCTTTGGGGGGCATTGCTGTCCTTTTGGAAGCTTACACGTGGATGGTGTGCATGAAGAGAAAGAAAGCAGAGAACAAGACTTCAGATGGTGTTAATGGAGCAAATGGCTATGGTTCTTCTACCCTTTAA

Protein sequence

>MS.gene96299.t1

MLRLTLALCVLSSIILTSSAQTQSCKNQTFSNNKAFTTCRDLPQLTSYLHWSYDETSGKLDIAYIHTGITATNRWVAWAINPSSTLDPAMIGAQALVAIPQASGSPKAYTSNIVDTSTRLQEGSISYPVSGLSATYQNNEVTIFATLTLPNGTTSLVHVWQDGVLSSDTTPQEHSHESSHQNSKEVLDLVSGTSQAASGIGSRQRRRNTHGVLNAISWGILMPTGAVIARYLKVFKSADPAWFYLHITCQVSAYIVGLSGFGTGLKLGSDSEGITYDTHRALAIVLVTLATLQVFALFLRPNKDHKLRFYWNIYHHVVGYVTISISITNVFKGFEALGDFVGDRYKNWKHAYIGIIGALGGIAVLLEAYTWMVCMKRKKAENKTSDGVNGANGYGSSTL