Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042118.t1 | XP_003610567.1 | 97.2 | 399 | 11 | 0 | 1 | 399 | 1 | 399 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042118.t1 | Q8VYH6 | 51.0 | 390 | 174 | 7 | 2 | 385 | 11 | 389 | 1.6e-102 | 374.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042118.t1 | G7JLR1 | 97.2 | 399 | 11 | 0 | 1 | 399 | 1 | 399 | 2.7e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38073 | MS.gene042118 | PPI |
| MS.gene042118 | MS.gene45410 | PPI |
| MS.gene042118 | MS.gene020907 | PPI |
| MS.gene042118 | MS.gene81207 | PPI |
| MS.gene042118 | MS.gene38189 | PPI |
| MS.gene042118 | MS.gene020234 | PPI |
| MS.gene042118 | MS.gene39320 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042118.t1 | MTR_4g133620 | 97.243 | 399 | 11 | 0 | 1 | 399 | 1 | 399 | 0.0 | 804 |
| MS.gene042118.t1 | MTR_2g026080 | 70.321 | 374 | 107 | 3 | 25 | 396 | 29 | 400 | 0.0 | 532 |
| MS.gene042118.t1 | MTR_7g051910 | 42.448 | 384 | 196 | 8 | 15 | 389 | 15 | 382 | 6.41e-97 | 295 |
| MS.gene042118.t1 | MTR_3g058510 | 41.713 | 362 | 196 | 8 | 25 | 381 | 26 | 377 | 9.67e-87 | 268 |
| MS.gene042118.t1 | MTR_8g009880 | 32.117 | 411 | 238 | 10 | 6 | 397 | 9 | 397 | 1.99e-65 | 214 |
| MS.gene042118.t1 | MTR_5g097620 | 34.204 | 383 | 227 | 8 | 25 | 392 | 60 | 432 | 4.12e-65 | 214 |
| MS.gene042118.t1 | MTR_5g093520 | 32.817 | 387 | 227 | 11 | 6 | 372 | 13 | 386 | 6.13e-59 | 197 |
| MS.gene042118.t1 | MTR_8g028075 | 37.766 | 188 | 104 | 5 | 188 | 371 | 375 | 553 | 8.84e-31 | 124 |
| MS.gene042118.t1 | MTR_7g098270 | 34.921 | 189 | 95 | 3 | 4 | 192 | 7 | 167 | 9.51e-28 | 110 |
| MS.gene042118.t1 | MTR_8g011650 | 34.021 | 194 | 121 | 5 | 1 | 194 | 8 | 194 | 2.31e-25 | 103 |
| MS.gene042118.t1 | MTR_7g117375 | 27.632 | 304 | 195 | 9 | 87 | 384 | 101 | 385 | 3.84e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042118.t1 | AT5G47530 | 53.281 | 381 | 162 | 7 | 14 | 388 | 16 | 386 | 2.97e-136 | 395 |
| MS.gene042118.t1 | AT4G17280 | 50.254 | 394 | 175 | 7 | 1 | 386 | 10 | 390 | 1.47e-130 | 381 |
| MS.gene042118.t1 | AT5G35735 | 46.766 | 402 | 191 | 8 | 5 | 395 | 9 | 398 | 1.47e-116 | 345 |
| MS.gene042118.t1 | AT3G25290 | 43.733 | 375 | 191 | 8 | 15 | 378 | 18 | 383 | 1.35e-103 | 312 |
| MS.gene042118.t1 | AT3G25290 | 43.733 | 375 | 191 | 8 | 15 | 378 | 18 | 383 | 1.35e-103 | 312 |
| MS.gene042118.t1 | AT4G12980 | 43.511 | 393 | 200 | 8 | 2 | 382 | 6 | 388 | 5.99e-99 | 300 |
| MS.gene042118.t1 | AT3G59070 | 40.633 | 379 | 199 | 11 | 3 | 367 | 6 | 372 | 6.16e-83 | 261 |
| MS.gene042118.t1 | AT2G04850 | 35.789 | 380 | 219 | 9 | 29 | 392 | 27 | 397 | 5.65e-69 | 223 |
| MS.gene042118.t1 | AT5G48750 | 42.979 | 235 | 124 | 5 | 17 | 247 | 26 | 254 | 8.39e-57 | 187 |
| MS.gene042118.t1 | AT3G07570 | 29.444 | 360 | 193 | 13 | 4 | 335 | 9 | 335 | 9.75e-30 | 118 |
| MS.gene042118.t1 | AT3G61750 | 34.946 | 186 | 113 | 4 | 167 | 352 | 100 | 277 | 9.43e-29 | 114 |
| MS.gene042118.t1 | AT3G61750 | 34.946 | 186 | 113 | 4 | 167 | 352 | 177 | 354 | 2.54e-28 | 115 |
| MS.gene042118.t1 | AT3G07390 | 33.679 | 193 | 117 | 6 | 9 | 199 | 36 | 219 | 3.03e-23 | 98.6 |
| MS.gene042118.t1 | AT3G07390 | 38.182 | 110 | 63 | 3 | 15 | 123 | 40 | 145 | 7.41e-16 | 75.1 |
| MS.gene042118.t1 | AT5G54830 | 26.842 | 190 | 118 | 7 | 160 | 342 | 648 | 823 | 3.10e-11 | 65.9 |
Find 103 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGTTATCCTGTTTC+TGG | 0.137764 | 8.3:+977046 | MS.gene042118:CDS |
| CATGCTTACATTGGTATTAT+TGG | 0.155934 | 8.3:+978266 | MS.gene042118:CDS |
| GAAGTCTTGGATCTTGTTTC+TGG | 0.179617 | 8.3:+977229 | MS.gene042118:CDS |
| GCCTACATAGTTGGATTATC+TGG | 0.214774 | 8.3:+977975 | MS.gene042118:CDS |
| CATTGGTATTATTGGTGCTT+TGG | 0.218211 | 8.3:+978274 | MS.gene042118:CDS |
| CCAAGACTTCCTTAGAGTTT+TGG | 0.257990 | 8.3:-977216 | None:intergenic |
| GTTTGTAATGCTAATGCTTA+TGG | 0.273236 | 8.3:-978183 | None:intergenic |
| ATGTTTGAAGTATATGCTTT+TGG | 0.274313 | 8.3:-976992 | None:intergenic |
| ATTGGTATTATTGGTGCTTT+GGG | 0.280623 | 8.3:+978275 | MS.gene042118:CDS |
| GAACAATAGCAAGTGCTCTA+TGG | 0.301053 | 8.3:-978052 | None:intergenic |
| TCCAAATGGAACAACCTCTT+TGG | 0.315874 | 8.3:+977123 | MS.gene042118:CDS |
| AAGACTTCAGATGGTGTTAA+TGG | 0.319234 | 8.3:+978365 | MS.gene042118:CDS |
| CTGGAATAACTGCAACAAAT+AGG | 0.325023 | 8.3:+976876 | MS.gene042118:CDS |
| TATACTTACTATGGCTTAAA+GGG | 0.330924 | 8.3:-978411 | None:intergenic |
| CTTTGTTGTTTGAGAATGTT+TGG | 0.332596 | 8.3:-976757 | None:intergenic |
| ATAGTTGGATTATCTGGTTT+TGG | 0.338557 | 8.3:+977981 | MS.gene042118:CDS |
| CTCAACTTATGGTCTTTGTT+TGG | 0.344950 | 8.3:-978119 | None:intergenic |
| TCCAGTAAAATCTCAACTTA+TGG | 0.345086 | 8.3:-978130 | None:intergenic |
| CAACAAATAGGTGGGTTGCT+TGG | 0.346817 | 8.3:+976888 | MS.gene042118:CDS |
| AAGGGTGCTGCTTGGATTGA+TGG | 0.347392 | 8.3:-976912 | None:intergenic |
| ACCAAAGAGGTTGTTCCATT+TGG | 0.348727 | 8.3:-977124 | None:intergenic |
| GCTTGTGCTCCGATCATGGC+TGG | 0.356922 | 8.3:-976938 | None:intergenic |
| TAGGGGATCGTTACAAGAAC+TGG | 0.360418 | 8.3:+978240 | MS.gene042118:CDS |
| ACCAATCCCACTTGCAGCTT+GGG | 0.378912 | 8.3:-977257 | None:intergenic |
| AACAAATAGGTGGGTTGCTT+GGG | 0.381341 | 8.3:+976889 | MS.gene042118:CDS |
| CAAGTCTCTGCCTACATAGT+TGG | 0.397780 | 8.3:+977966 | MS.gene042118:CDS |
| AATATCTACCACCACGTTGT+AGG | 0.399297 | 8.3:+978152 | MS.gene042118:CDS |
| TTTCAAAGGGTTTGAAGCAT+TGG | 0.401125 | 8.3:+978208 | MS.gene042118:CDS |
| TGGTTCATGTATGGCAAGAT+GGG | 0.403428 | 8.3:+977143 | MS.gene042118:CDS |
| TTGGTTCATGTATGGCAAGA+TGG | 0.409548 | 8.3:+977142 | MS.gene042118:CDS |
| ATCTTCTCACCAAAACTCTA+AGG | 0.410472 | 8.3:+977207 | MS.gene042118:CDS |
| TTCAAAGGGTTTGAAGCATT+GGG | 0.410583 | 8.3:+978209 | MS.gene042118:CDS |
| CAACCTCTTTGGTTCATGTA+TGG | 0.419802 | 8.3:+977134 | MS.gene042118:CDS |
| AGTTCTAAATGCAATAAGTT+GGG | 0.423172 | 8.3:+977851 | MS.gene042118:CDS |
| TTTGGGCTTCCACTGGCTTG+TGG | 0.428919 | 8.3:-976974 | None:intergenic |
| TGCTATTGTTCTTGTAACCT+TGG | 0.433426 | 8.3:+978064 | MS.gene042118:CDS |
| ACCAGAAACAGGATAACTAA+TGG | 0.433626 | 8.3:-977047 | None:intergenic |
| CCAAAACTCTAAGGAAGTCT+TGG | 0.434557 | 8.3:+977216 | MS.gene042118:CDS |
| CAAAGCTTGTGCTCCGATCA+TGG | 0.437700 | 8.3:-976942 | None:intergenic |
| TGGGGAATCTTGATGCCAAC+AGG | 0.450699 | 8.3:+977870 | MS.gene042118:CDS |
| GCTGGGTCAAGGGTGCTGCT+TGG | 0.458703 | 8.3:-976920 | None:intergenic |
| TGGTATTATTGGTGCTTTGG+GGG | 0.460113 | 8.3:+978277 | MS.gene042118:CDS |
| GTGGCAGACAAACCAGAAAC+AGG | 0.463187 | 8.3:-977058 | None:intergenic |
| GCTACTTTGACCCTTCCAAA+TGG | 0.468426 | 8.3:+977109 | MS.gene042118:CDS |
| CATGATCGGAGCACAAGCTT+TGG | 0.470343 | 8.3:+976943 | MS.gene042118:CDS |
| TCCCAAGCTGCAAGTGGGAT+TGG | 0.471818 | 8.3:+977256 | MS.gene042118:CDS |
| AACCAATCCCACTTGCAGCT+TGG | 0.473554 | 8.3:-977258 | None:intergenic |
| GATGGTGTTAATGGAGCAAA+TGG | 0.483049 | 8.3:+978374 | MS.gene042118:CDS |
| ATATCTACCACCACGTTGTA+GGG | 0.487362 | 8.3:+978153 | MS.gene042118:CDS |
| TCCGATCATGGCTGGGTCAA+GGG | 0.488469 | 8.3:-976930 | None:intergenic |
| AACAATAGCAAGTGCTCTAT+GGG | 0.489652 | 8.3:-978051 | None:intergenic |
| CTCCGATCATGGCTGGGTCA+AGG | 0.489759 | 8.3:-976931 | None:intergenic |
| GGTATTATTGGTGCTTTGGG+GGG | 0.491041 | 8.3:+978278 | MS.gene042118:CDS |
| TCAAATCCGCAGACCCTGCT+TGG | 0.493088 | 8.3:+977922 | MS.gene042118:CDS |
| ACCCTTGACCCAGCCATGAT+CGG | 0.495736 | 8.3:+976929 | MS.gene042118:CDS |
| AAGAGGTTGTTCCATTTGGA+AGG | 0.497441 | 8.3:-977120 | None:intergenic |
| GATCGGAGCACAAGCTTTGG+TGG | 0.497818 | 8.3:+976946 | MS.gene042118:CDS |
| GAGTTCTAAATGCAATAAGT+TGG | 0.504686 | 8.3:+977850 | MS.gene042118:CDS |
| AGTAATAGCAAGGTATTTGA+AGG | 0.512011 | 8.3:+977896 | MS.gene042118:CDS |
| TTGGTATTATTGGTGCTTTG+GGG | 0.518620 | 8.3:+978276 | MS.gene042118:CDS |
| ATGTGAAGATAGAACCAAGC+AGG | 0.523540 | 8.3:-977936 | None:intergenic |
| TTTGGTACTGGTCTCAAACT+CGG | 0.532870 | 8.3:+977999 | MS.gene042118:CDS |
| TTTGGAAGCTTACACGTGGA+TGG | 0.533911 | 8.3:+978313 | MS.gene042118:CDS |
| AGTTAACCTCGTACCTCCAC+TGG | 0.539955 | 8.3:+976807 | MS.gene042118:CDS |
| TCCACGTGTAAGCTTCCAAA+AGG | 0.545026 | 8.3:-978310 | None:intergenic |
| CTTGTGCTCCGATCATGGCT+GGG | 0.548227 | 8.3:-976937 | None:intergenic |
| GAATAACTGCAACAAATAGG+TGG | 0.552346 | 8.3:+976879 | MS.gene042118:CDS |
| CTTGCTATTACTGCTCCTGT+TGG | 0.560569 | 8.3:-977885 | None:intergenic |
| GATTCATGGCTATGTTCTTG+AGG | 0.562296 | 8.3:-977187 | None:intergenic |
| AACTGGAAGCATGCTTACAT+TGG | 0.570819 | 8.3:+978257 | MS.gene042118:CDS |
| GGTTCATGTATGGCAAGATG+GGG | 0.572736 | 8.3:+977144 | MS.gene042118:CDS |
| ACCAGATAATCCAACTATGT+AGG | 0.573850 | 8.3:-977976 | None:intergenic |
| GTTCTAAATGCAATAAGTTG+GGG | 0.579470 | 8.3:+977852 | MS.gene042118:CDS |
| AGAGGTTGTTCCATTTGGAA+GGG | 0.580852 | 8.3:-977119 | None:intergenic |
| GCAGAGAACAAGACTTCAGA+TGG | 0.581792 | 8.3:+978356 | MS.gene042118:CDS |
| CAAACTCGGTAGTGATTCAG+AGG | 0.584270 | 8.3:+978013 | MS.gene042118:CDS |
| ACATGATTGGGTTTGAGCTG+AGG | 0.587718 | 8.3:-976729 | None:intergenic |
| CATCATGTTGAGGCTTACGT+TGG | 0.594673 | 8.3:+976673 | None:intergenic |
| AATCCCACTTGCAGCTTGGG+AGG | 0.599310 | 8.3:-977254 | None:intergenic |
| GGTACCTCCCAAGCTGCAAG+TGG | 0.604136 | 8.3:+977250 | MS.gene042118:CDS |
| GTGGCTATTCCACAAGCCAG+TGG | 0.609291 | 8.3:+976965 | MS.gene042118:CDS |
| AATAACTGCAACAAATAGGT+GGG | 0.611835 | 8.3:+976880 | MS.gene042118:CDS |
| TTGTTTCATCGTATGACCAG+TGG | 0.615698 | 8.3:-976823 | None:intergenic |
| ACAAGCACACGGTTGCAAGA+AGG | 0.618408 | 8.3:+977022 | MS.gene042118:CDS |
| GACATAGCATACATACACAC+TGG | 0.619673 | 8.3:+976857 | MS.gene042118:CDS |
| GTTAATGGAGCAAATGGCTA+TGG | 0.624982 | 8.3:+978380 | MS.gene042118:CDS |
| AAACACTTGAAGAGTTGCCA+AGG | 0.625483 | 8.3:-978081 | None:intergenic |
| TTGCCATACATGAACCAAAG+AGG | 0.632447 | 8.3:-977137 | None:intergenic |
| CAACAGGAGCAGTAATAGCA+AGG | 0.639419 | 8.3:+977886 | MS.gene042118:CDS |
| TTTCATCGTATGACCAGTGG+AGG | 0.641448 | 8.3:-976820 | None:intergenic |
| TGTGAAGATAGAACCAAGCA+GGG | 0.656540 | 8.3:-977935 | None:intergenic |
| ATAGAACCAAGCAGGGTCTG+CGG | 0.662307 | 8.3:-977928 | None:intergenic |
| AACCTCATTATTCTGATACG+TGG | 0.667735 | 8.3:-977077 | None:intergenic |
| GTACCTCCCAAGCTGCAAGT+GGG | 0.668450 | 8.3:+977251 | MS.gene042118:CDS |
| TGGAGGTACGAGGTTAACTG+TGG | 0.671548 | 8.3:-976803 | None:intergenic |
| TGGTCATACGATGAAACAAG+TGG | 0.675142 | 8.3:+976827 | MS.gene042118:CDS |
| TGCCACGTATCAGAATAATG+AGG | 0.677711 | 8.3:+977075 | MS.gene042118:CDS |
| ACATTGTAGACACAAGCACA+CGG | 0.692248 | 8.3:+977011 | MS.gene042118:CDS |
| TATGCTACTCAAAACACACA+AGG | 0.702224 | 8.3:-976696 | None:intergenic |
| GTATGACCAGTGGAGGTACG+AGG | 0.705546 | 8.3:-976813 | None:intergenic |
| AAACTCGGTAGTGATTCAGA+GGG | 0.706199 | 8.3:+978014 | MS.gene042118:CDS |
| TAACATACCCTACAACGTGG+TGG | 0.753877 | 8.3:-978160 | None:intergenic |
| TGGTAACATACCCTACAACG+TGG | 0.797593 | 8.3:-978163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTAAATAAAGTTCT+AGG | - | chr8.3:977571-977590 | None:intergenic | 10.0% |
| !! | AAATATTTATAATGATCCAA+CGG | - | chr8.3:977367-977386 | None:intergenic | 15.0% |
| !! | CACGACATAATTTATAAAAT+TGG | - | chr8.3:977747-977766 | None:intergenic | 20.0% |
| !! | GTGTTAGTACTTTATAATTA+GGG | + | chr8.3:977764-977783 | MS.gene042118:intron | 20.0% |
| ! | AACAGGATAATACAATCATA+TGG | - | chr8.3:977619-977638 | None:intergenic | 25.0% |
| ! | ACTCTCTATTATCAAGAATT+TGG | - | chr8.3:977492-977511 | None:intergenic | 25.0% |
| ! | CGTGTTAGTACTTTATAATT+AGG | + | chr8.3:977763-977782 | MS.gene042118:intron | 25.0% |
| ! | TATGATTGTATTATCCTGTT+TGG | + | chr8.3:977619-977638 | MS.gene042118:intron | 25.0% |
| !! | ATTCTTAATTTTCAGACACA+TGG | + | chr8.3:977828-977847 | MS.gene042118:intron | 25.0% |
| !! | TGTAAGTTCATACTGTTTTA+AGG | + | chr8.3:977300-977319 | MS.gene042118:intron | 25.0% |
| !!! | AGTTCTAAATGCAATAAGTT+GGG | + | chr8.3:977851-977870 | MS.gene042118:CDS | 25.0% |
| !!! | ATGTTTGAAGTATATGCTTT+TGG | - | chr8.3:976995-977014 | None:intergenic | 25.0% |
| !!! | ATGTTTGGTTTTTACATGAT+TGG | - | chr8.3:976745-976764 | None:intergenic | 25.0% |
| !!! | TGTTTGAAGTATATGCTTTT+GGG | - | chr8.3:976994-977013 | None:intergenic | 25.0% |
| !!! | TGTTTGGTTTTTACATGATT+GGG | - | chr8.3:976744-976763 | None:intergenic | 25.0% |
| AATAACTGCAACAAATAGGT+GGG | + | chr8.3:976880-976899 | MS.gene042118:CDS | 30.0% | |
| ATCATTATGTGTTTCGATTG+TGG | + | chr8.3:977512-977531 | MS.gene042118:intron | 30.0% | |
| CATGCTTACATTGGTATTAT+TGG | + | chr8.3:978266-978285 | MS.gene042118:CDS | 30.0% | |
| GTTTGTAATGCTAATGCTTA+TGG | - | chr8.3:978186-978205 | None:intergenic | 30.0% | |
| TCCAGTAAAATCTCAACTTA+TGG | - | chr8.3:978133-978152 | None:intergenic | 30.0% | |
| TGGTCATAATGTAATTGCAT+AGG | + | chr8.3:977532-977551 | MS.gene042118:intron | 30.0% | |
| ! | ACACCTCAAATTTAAAGTGT+CGG | - | chr8.3:977658-977677 | None:intergenic | 30.0% |
| ! | AGCATTACAAACGTTTTCAA+AGG | + | chr8.3:978194-978213 | MS.gene042118:CDS | 30.0% |
| ! | AGTAATAGCAAGGTATTTGA+AGG | + | chr8.3:977896-977915 | MS.gene042118:CDS | 30.0% |
| ! | ATTGGTATTATTGGTGCTTT+GGG | + | chr8.3:978275-978294 | MS.gene042118:CDS | 30.0% |
| ! | GAATTTTTACACAAAACCGT+TGG | + | chr8.3:977348-977367 | MS.gene042118:intron | 30.0% |
| ! | GCATTACAAACGTTTTCAAA+GGG | + | chr8.3:978195-978214 | MS.gene042118:CDS | 30.0% |
| ! | GTTCTAAATGCAATAAGTTG+GGG | + | chr8.3:977852-977871 | MS.gene042118:CDS | 30.0% |
| !! | AAAGTTCTAGGATTGTGATA+TGG | - | chr8.3:977559-977578 | None:intergenic | 30.0% |
| !! | ACCATAAGTTGAGATTTTAC+TGG | + | chr8.3:978129-978148 | MS.gene042118:CDS | 30.0% |
| !! | ATAGTTGGATTATCTGGTTT+TGG | + | chr8.3:977981-978000 | MS.gene042118:CDS | 30.0% |
| !! | CTTTGTTGTTTGAGAATGTT+TGG | - | chr8.3:976760-976779 | None:intergenic | 30.0% |
| !! | GAGTTCTAAATGCAATAAGT+TGG | + | chr8.3:977850-977869 | MS.gene042118:CDS | 30.0% |
| !!! | AAGTGTTTGCTCTATTTTTG+AGG | + | chr8.3:978096-978115 | MS.gene042118:CDS | 30.0% |
| AACAATAGCAAGTGCTCTAT+GGG | - | chr8.3:978054-978073 | None:intergenic | 35.0% | |
| AACCTCATTATTCTGATACG+TGG | - | chr8.3:977080-977099 | None:intergenic | 35.0% | |
| ACACCGACACTTTAAATTTG+AGG | + | chr8.3:977652-977671 | MS.gene042118:intron | 35.0% | |
| ACCAGAAACAGGATAACTAA+TGG | - | chr8.3:977050-977069 | None:intergenic | 35.0% | |
| ACCAGATAATCCAACTATGT+AGG | - | chr8.3:977979-977998 | None:intergenic | 35.0% | |
| ATCTTCTCACCAAAACTCTA+AGG | + | chr8.3:977207-977226 | MS.gene042118:CDS | 35.0% | |
| CAACTTGGTACTTACATATG+TGG | + | chr8.3:977718-977737 | MS.gene042118:intron | 35.0% | |
| CACATATGTAAGTACCAAGT+TGG | - | chr8.3:977720-977739 | None:intergenic | 35.0% | |
| CTCAACTTATGGTCTTTGTT+TGG | - | chr8.3:978122-978141 | None:intergenic | 35.0% | |
| CTGGAATAACTGCAACAAAT+AGG | + | chr8.3:976876-976895 | MS.gene042118:CDS | 35.0% | |
| GAATAACTGCAACAAATAGG+TGG | + | chr8.3:976879-976898 | MS.gene042118:CDS | 35.0% | |
| TATGCTACTCAAAACACACA+AGG | - | chr8.3:976699-976718 | None:intergenic | 35.0% | |
| TCCATTAGTTATCCTGTTTC+TGG | + | chr8.3:977046-977065 | MS.gene042118:CDS | 35.0% | |
| TGCTATTGTTCTTGTAACCT+TGG | + | chr8.3:978064-978083 | MS.gene042118:CDS | 35.0% | |
| ! | AAGACTTCAGATGGTGTTAA+TGG | + | chr8.3:978365-978384 | MS.gene042118:CDS | 35.0% |
| ! | CATTGGTATTATTGGTGCTT+TGG | + | chr8.3:978274-978293 | MS.gene042118:CDS | 35.0% |
| ! | TTCAAAGGGTTTGAAGCATT+GGG | + | chr8.3:978209-978228 | MS.gene042118:CDS | 35.0% |
| ! | TTGGTATTATTGGTGCTTTG+GGG | + | chr8.3:978276-978295 | MS.gene042118:CDS | 35.0% |
| ! | TTTCAAAGGGTTTGAAGCAT+TGG | + | chr8.3:978208-978227 | MS.gene042118:CDS | 35.0% |
| !! | AGTTTTGGTGAGAAGATTCA+TGG | - | chr8.3:977204-977223 | None:intergenic | 35.0% |
| !!! | AAGCATTGGGAGATTTTGTA+GGG | + | chr8.3:978222-978241 | MS.gene042118:CDS | 35.0% |
| AAACACTTGAAGAGTTGCCA+AGG | - | chr8.3:978084-978103 | None:intergenic | 40.0% | |
| AAACTCGGTAGTGATTCAGA+GGG | + | chr8.3:978014-978033 | MS.gene042118:CDS | 40.0% | |
| AAGAGGTTGTTCCATTTGGA+AGG | - | chr8.3:977123-977142 | None:intergenic | 40.0% | |
| AATATCTACCACCACGTTGT+AGG | + | chr8.3:978152-978171 | MS.gene042118:CDS | 40.0% | |
| ACATTGTAGACACAAGCACA+CGG | + | chr8.3:977011-977030 | MS.gene042118:CDS | 40.0% | |
| ACCAAAGAGGTTGTTCCATT+TGG | - | chr8.3:977127-977146 | None:intergenic | 40.0% | |
| AGAGGTTGTTCCATTTGGAA+GGG | - | chr8.3:977122-977141 | None:intergenic | 40.0% | |
| ATATCTACCACCACGTTGTA+GGG | + | chr8.3:978153-978172 | MS.gene042118:CDS | 40.0% | |
| ATGTGAAGATAGAACCAAGC+AGG | - | chr8.3:977939-977958 | None:intergenic | 40.0% | |
| GAACAATAGCAAGTGCTCTA+TGG | - | chr8.3:978055-978074 | None:intergenic | 40.0% | |
| GACATAGCATACATACACAC+TGG | + | chr8.3:976857-976876 | MS.gene042118:CDS | 40.0% | |
| GATTCATGGCTATGTTCTTG+AGG | - | chr8.3:977190-977209 | None:intergenic | 40.0% | |
| GCCTACATAGTTGGATTATC+TGG | + | chr8.3:977975-977994 | MS.gene042118:CDS | 40.0% | |
| GTTAATGGAGCAAATGGCTA+TGG | + | chr8.3:978380-978399 | MS.gene042118:CDS | 40.0% | |
| TCCAAATGGAACAACCTCTT+TGG | + | chr8.3:977123-977142 | MS.gene042118:CDS | 40.0% | |
| TGCCACGTATCAGAATAATG+AGG | + | chr8.3:977075-977094 | MS.gene042118:CDS | 40.0% | |
| TGGTCATACGATGAAACAAG+TGG | + | chr8.3:976827-976846 | MS.gene042118:CDS | 40.0% | |
| TGGTTCATGTATGGCAAGAT+GGG | + | chr8.3:977143-977162 | MS.gene042118:CDS | 40.0% | |
| TGTGAAGATAGAACCAAGCA+GGG | - | chr8.3:977938-977957 | None:intergenic | 40.0% | |
| TTGCCATACATGAACCAAAG+AGG | - | chr8.3:977140-977159 | None:intergenic | 40.0% | |
| TTGGTTCATGTATGGCAAGA+TGG | + | chr8.3:977142-977161 | MS.gene042118:CDS | 40.0% | |
| TTGTTTCATCGTATGACCAG+TGG | - | chr8.3:976826-976845 | None:intergenic | 40.0% | |
| ! | AACTGGAAGCATGCTTACAT+TGG | + | chr8.3:978257-978276 | MS.gene042118:CDS | 40.0% |
| ! | AGGGACGATTCTTGTTTGAT+TGG | + | chr8.3:977783-977802 | MS.gene042118:intron | 40.0% |
| ! | CAACCTCTTTGGTTCATGTA+TGG | + | chr8.3:977134-977153 | MS.gene042118:CDS | 40.0% |
| ! | CCAAAACTCTAAGGAAGTCT+TGG | + | chr8.3:977216-977235 | MS.gene042118:CDS | 40.0% |
| ! | CCAAGACTTCCTTAGAGTTT+TGG | - | chr8.3:977219-977238 | None:intergenic | 40.0% |
| ! | GAAGTCTTGGATCTTGTTTC+TGG | + | chr8.3:977229-977248 | MS.gene042118:CDS | 40.0% |
| ! | GATGGTGTTAATGGAGCAAA+TGG | + | chr8.3:978374-978393 | MS.gene042118:CDS | 40.0% |
| ! | TGGTATTATTGGTGCTTTGG+GGG | + | chr8.3:978277-978296 | MS.gene042118:CDS | 40.0% |
| !! | AACAAATAGGTGGGTTGCTT+GGG | + | chr8.3:976889-976908 | MS.gene042118:CDS | 40.0% |
| !! | AGCATTGGGAGATTTTGTAG+GGG | + | chr8.3:978223-978242 | MS.gene042118:CDS | 40.0% |
| !! | TGTAAGTACCAAGTTGGTGT+TGG | - | chr8.3:977714-977733 | None:intergenic | 40.0% |
| !! | TTTGGTACTGGTCTCAAACT+CGG | + | chr8.3:977999-978018 | MS.gene042118:CDS | 40.0% |
| !!! | GAAGCATTGGGAGATTTTGT+AGG | + | chr8.3:978221-978240 | MS.gene042118:CDS | 40.0% |
| !!! | GGATTATCTGGTTTTGGTAC+TGG | + | chr8.3:977987-978006 | MS.gene042118:CDS | 40.0% |
| ACATGATTGGGTTTGAGCTG+AGG | - | chr8.3:976732-976751 | None:intergenic | 45.0% | |
| CAAACTCGGTAGTGATTCAG+AGG | + | chr8.3:978013-978032 | MS.gene042118:CDS | 45.0% | |
| CAACAGGAGCAGTAATAGCA+AGG | + | chr8.3:977886-977905 | MS.gene042118:CDS | 45.0% | |
| CAAGTCTCTGCCTACATAGT+TGG | + | chr8.3:977966-977985 | MS.gene042118:CDS | 45.0% | |
| GCAGAGAACAAGACTTCAGA+TGG | + | chr8.3:978356-978375 | MS.gene042118:CDS | 45.0% | |
| GGTTCATGTATGGCAAGATG+GGG | + | chr8.3:977144-977163 | MS.gene042118:CDS | 45.0% | |
| GTGTCGCATAGATACCAAAC+AGG | - | chr8.3:977636-977655 | None:intergenic | 45.0% | |
| TAACATACCCTACAACGTGG+TGG | - | chr8.3:978163-978182 | None:intergenic | 45.0% | |
| TAGGGGATCGTTACAAGAAC+TGG | + | chr8.3:978240-978259 | MS.gene042118:CDS | 45.0% | |
| TCCACGTGTAAGCTTCCAAA+AGG | - | chr8.3:978313-978332 | None:intergenic | 45.0% | |
| TGGTAACATACCCTACAACG+TGG | - | chr8.3:978166-978185 | None:intergenic | 45.0% | |
| TTTCATCGTATGACCAGTGG+AGG | - | chr8.3:976823-976842 | None:intergenic | 45.0% | |
| TTTGGAAGCTTACACGTGGA+TGG | + | chr8.3:978313-978332 | MS.gene042118:CDS | 45.0% | |
| ! | ATATGCTTTTGGGCTTCCAC+TGG | - | chr8.3:976984-977003 | None:intergenic | 45.0% |
| ! | GCTACTTTGACCCTTCCAAA+TGG | + | chr8.3:977109-977128 | MS.gene042118:CDS | 45.0% |
| ! | GGTATTATTGGTGCTTTGGG+GGG | + | chr8.3:978278-978297 | MS.gene042118:CDS | 45.0% |
| !! | AGTACCAAGTTGGTGTTGGT+CGG | - | chr8.3:977710-977729 | None:intergenic | 45.0% |
| !! | CAACAAATAGGTGGGTTGCT+TGG | + | chr8.3:976888-976907 | MS.gene042118:CDS | 45.0% |
| !! | CTTGCTATTACTGCTCCTGT+TGG | - | chr8.3:977888-977907 | None:intergenic | 45.0% |
| !! | TCCTTTTGGAAGCTTACACG+TGG | + | chr8.3:978309-978328 | MS.gene042118:CDS | 45.0% |
| AACCAATCCCACTTGCAGCT+TGG | - | chr8.3:977261-977280 | None:intergenic | 50.0% | |
| ACAAGCACACGGTTGCAAGA+AGG | + | chr8.3:977022-977041 | MS.gene042118:CDS | 50.0% | |
| ACCAATCCCACTTGCAGCTT+GGG | - | chr8.3:977260-977279 | None:intergenic | 50.0% | |
| AGTTAACCTCGTACCTCCAC+TGG | + | chr8.3:976807-976826 | MS.gene042118:CDS | 50.0% | |
| ATAGAACCAAGCAGGGTCTG+CGG | - | chr8.3:977931-977950 | None:intergenic | 50.0% | |
| CAAAGCTTGTGCTCCGATCA+TGG | - | chr8.3:976945-976964 | None:intergenic | 50.0% | |
| CATGATCGGAGCACAAGCTT+TGG | + | chr8.3:976943-976962 | MS.gene042118:CDS | 50.0% | |
| CGGACTACACTAACACGTGT+TGG | - | chr8.3:977690-977709 | None:intergenic | 50.0% | |
| GTGGCAGACAAACCAGAAAC+AGG | - | chr8.3:977061-977080 | None:intergenic | 50.0% | |
| TAGTCCGACCAACACCAACT+TGG | + | chr8.3:977703-977722 | MS.gene042118:intron | 50.0% | |
| TGGGGAATCTTGATGCCAAC+AGG | + | chr8.3:977870-977889 | MS.gene042118:CDS | 50.0% | |
| ! | TGGAGGTACGAGGTTAACTG+TGG | - | chr8.3:976806-976825 | None:intergenic | 50.0% |
| !! | AAGGGTGCTGCTTGGATTGA+TGG | - | chr8.3:976915-976934 | None:intergenic | 50.0% |
| AATCCCACTTGCAGCTTGGG+AGG | - | chr8.3:977257-977276 | None:intergenic | 55.0% | |
| ACCCTTGACCCAGCCATGAT+CGG | + | chr8.3:976929-976948 | MS.gene042118:CDS | 55.0% | |
| CTTGTGCTCCGATCATGGCT+GGG | - | chr8.3:976940-976959 | None:intergenic | 55.0% | |
| GTACCTCCCAAGCTGCAAGT+GGG | + | chr8.3:977251-977270 | MS.gene042118:CDS | 55.0% | |
| GTGGCTATTCCACAAGCCAG+TGG | + | chr8.3:976965-976984 | MS.gene042118:CDS | 55.0% | |
| TCAAATCCGCAGACCCTGCT+TGG | + | chr8.3:977922-977941 | MS.gene042118:CDS | 55.0% | |
| TCCCAAGCTGCAAGTGGGAT+TGG | + | chr8.3:977256-977275 | MS.gene042118:CDS | 55.0% | |
| TCCGATCATGGCTGGGTCAA+GGG | - | chr8.3:976933-976952 | None:intergenic | 55.0% | |
| ! | GATCGGAGCACAAGCTTTGG+TGG | + | chr8.3:976946-976965 | MS.gene042118:CDS | 55.0% |
| ! | GTATGACCAGTGGAGGTACG+AGG | - | chr8.3:976816-976835 | None:intergenic | 55.0% |
| !! | TTTGGGCTTCCACTGGCTTG+TGG | - | chr8.3:976977-976996 | None:intergenic | 55.0% |
| CTCCGATCATGGCTGGGTCA+AGG | - | chr8.3:976934-976953 | None:intergenic | 60.0% | |
| GCTTGTGCTCCGATCATGGC+TGG | - | chr8.3:976941-976960 | None:intergenic | 60.0% | |
| GGTACCTCCCAAGCTGCAAG+TGG | + | chr8.3:977250-977269 | MS.gene042118:CDS | 60.0% | |
| !!! | GGGGGGCATTGCTGTCCTTT+TGG | + | chr8.3:978295-978314 | MS.gene042118:CDS | 60.0% |
| !! | GCTGGGTCAAGGGTGCTGCT+TGG | - | chr8.3:976923-976942 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 976677 | 978418 | 976677 | ID=MS.gene042118 |
| chr8.3 | mRNA | 976677 | 978418 | 976677 | ID=MS.gene042118.t1;Parent=MS.gene042118 |
| chr8.3 | exon | 976677 | 977300 | 976677 | ID=MS.gene042118.t1.exon1;Parent=MS.gene042118.t1 |
| chr8.3 | CDS | 976677 | 977300 | 976677 | ID=cds.MS.gene042118.t1;Parent=MS.gene042118.t1 |
| chr8.3 | exon | 977843 | 978418 | 977843 | ID=MS.gene042118.t1.exon2;Parent=MS.gene042118.t1 |
| chr8.3 | CDS | 977843 | 978418 | 977843 | ID=cds.MS.gene042118.t1;Parent=MS.gene042118.t1 |
| Gene Sequence |
| Protein sequence |
