Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02027.t1 | XP_003594454.1 | 86.4 | 280 | 36 | 1 | 3 | 280 | 40 | 319 | 3.70E-126 | 461.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02027.t1 | O81851 | 46.0 | 250 | 123 | 4 | 37 | 280 | 60 | 303 | 6.0e-48 | 192.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02027.t1 | G7IFV4 | 86.4 | 280 | 36 | 1 | 3 | 280 | 40 | 319 | 2.7e-126 | 461.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02027 | MS.gene02785 | PPI |
MS.gene02027 | MS.gene067574 | PPI |
MS.gene02027 | MS.gene74604 | PPI |
MS.gene02027 | MS.gene56438 | PPI |
MS.gene003226 | MS.gene02027 | PPI |
MS.gene02027 | MS.gene003226 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02027.t1 | MTR_2g028830 | 97.872 | 282 | 4 | 1 | 1 | 280 | 38 | 319 | 0.0 | 576 |
MS.gene02027.t1 | MTR_4g083540 | 52.837 | 282 | 117 | 8 | 2 | 280 | 25 | 293 | 3.76e-94 | 280 |
MS.gene02027.t1 | MTR_2g069350 | 42.462 | 325 | 130 | 13 | 13 | 280 | 42 | 366 | 4.80e-68 | 215 |
MS.gene02027.t1 | MTR_5g013690 | 31.863 | 204 | 117 | 4 | 88 | 280 | 80 | 272 | 1.26e-27 | 107 |
MS.gene02027.t1 | MTR_5g013690 | 31.863 | 204 | 117 | 4 | 88 | 280 | 143 | 335 | 1.42e-27 | 109 |
MS.gene02027.t1 | MTR_3g117970 | 35.955 | 178 | 88 | 5 | 91 | 267 | 31 | 183 | 4.10e-23 | 94.0 |
MS.gene02027.t1 | MTR_1g019250 | 30.481 | 187 | 129 | 1 | 83 | 269 | 145 | 330 | 6.01e-23 | 96.7 |
MS.gene02027.t1 | MTR_4g036485 | 27.358 | 212 | 130 | 3 | 66 | 267 | 2 | 199 | 6.66e-22 | 91.3 |
MS.gene02027.t1 | MTR_4g099060 | 31.604 | 212 | 131 | 4 | 75 | 280 | 83 | 286 | 5.68e-21 | 90.5 |
MS.gene02027.t1 | MTR_4g099060 | 31.604 | 212 | 131 | 4 | 75 | 280 | 128 | 331 | 8.26e-21 | 90.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02027.t1 | AT4G19700 | 50.735 | 272 | 120 | 6 | 15 | 280 | 40 | 303 | 1.15e-76 | 236 |
MS.gene02027.t1 | AT5G45100 | 47.183 | 284 | 123 | 7 | 6 | 280 | 1 | 266 | 6.05e-75 | 230 |
MS.gene02027.t1 | AT5G45100 | 46.853 | 286 | 125 | 7 | 4 | 280 | 26 | 293 | 1.63e-74 | 229 |
MS.gene02027.t1 | AT3G12920 | 40.468 | 299 | 143 | 9 | 2 | 280 | 51 | 334 | 5.40e-62 | 199 |
MS.gene02027.t1 | AT1G79110 | 48.624 | 218 | 95 | 3 | 80 | 280 | 115 | 332 | 1.98e-54 | 179 |
MS.gene02027.t1 | AT1G79110 | 48.624 | 218 | 95 | 3 | 80 | 280 | 137 | 354 | 2.55e-54 | 180 |
MS.gene02027.t1 | AT1G79110 | 47.964 | 221 | 95 | 4 | 80 | 280 | 137 | 357 | 2.94e-52 | 174 |
MS.gene02027.t1 | AT1G45976 | 32.673 | 202 | 125 | 4 | 71 | 269 | 122 | 315 | 9.00e-29 | 112 |
MS.gene02027.t1 | AT1G60610 | 30.841 | 214 | 140 | 2 | 70 | 277 | 126 | 337 | 9.23e-26 | 104 |
MS.gene02027.t1 | AT1G60610 | 30.841 | 214 | 140 | 2 | 70 | 277 | 126 | 337 | 9.23e-26 | 104 |
MS.gene02027.t1 | AT1G60610 | 30.841 | 214 | 140 | 2 | 70 | 277 | 126 | 337 | 9.23e-26 | 104 |
MS.gene02027.t1 | AT1G60610 | 30.841 | 214 | 140 | 2 | 70 | 277 | 126 | 337 | 9.23e-26 | 104 |
MS.gene02027.t1 | AT1G60610 | 30.841 | 214 | 140 | 2 | 70 | 277 | 126 | 337 | 9.23e-26 | 104 |
MS.gene02027.t1 | AT1G10650 | 32.075 | 212 | 124 | 4 | 80 | 280 | 81 | 283 | 3.24e-24 | 99.4 |
MS.gene02027.t1 | AT1G10650 | 32.075 | 212 | 124 | 4 | 80 | 280 | 137 | 339 | 7.46e-24 | 99.4 |
MS.gene02027.t1 | AT4G35070 | 30.601 | 183 | 121 | 3 | 88 | 269 | 22 | 199 | 9.70e-22 | 90.9 |
MS.gene02027.t1 | AT4G35070 | 30.601 | 183 | 121 | 3 | 88 | 269 | 77 | 254 | 1.27e-21 | 91.7 |
MS.gene02027.t1 | AT1G32740 | 31.111 | 225 | 136 | 7 | 65 | 275 | 44 | 263 | 2.41e-20 | 88.2 |
MS.gene02027.t1 | AT1G32740 | 31.111 | 225 | 136 | 7 | 65 | 275 | 44 | 263 | 2.41e-20 | 88.2 |
MS.gene02027.t1 | AT1G32740 | 31.111 | 225 | 136 | 7 | 65 | 275 | 88 | 307 | 3.78e-20 | 88.6 |
MS.gene02027.t1 | AT1G32740 | 31.111 | 225 | 136 | 7 | 65 | 275 | 77 | 296 | 3.83e-20 | 88.6 |
MS.gene02027.t1 | AT5G47050 | 26.400 | 250 | 156 | 4 | 35 | 280 | 75 | 300 | 2.44e-19 | 86.3 |
MS.gene02027.t1 | AT4G17680 | 25.385 | 260 | 153 | 7 | 51 | 277 | 61 | 312 | 2.66e-18 | 83.6 |
MS.gene02027.t1 | AT4G17680 | 25.628 | 199 | 134 | 4 | 85 | 277 | 50 | 240 | 1.65e-17 | 80.1 |
MS.gene02027.t1 | AT4G17680 | 26.087 | 184 | 122 | 4 | 100 | 277 | 13 | 188 | 6.36e-14 | 69.3 |
MS.gene02027.t1 | AT2G12290 | 50.769 | 65 | 31 | 1 | 143 | 207 | 28 | 91 | 4.76e-12 | 62.4 |
Find 55 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAATTGTTACGTAAATAAT+TGG | 0.209804 | 2.2:+58948153 | None:intergenic |
CAAACATTGGATTGATAAAA+TGG | 0.230510 | 2.2:+58949229 | None:intergenic |
AAAGAATAGGGAAGCTAAAT+TGG | 0.250485 | 2.2:-58948255 | MS.gene02027:CDS |
CAATTATTTACGTAACAATT+TGG | 0.251798 | 2.2:-58948152 | MS.gene02027:CDS |
TTGTGTTGTTACTACCTTGT+AGG | 0.317083 | 2.2:-58947955 | MS.gene02027:CDS |
GATGAAGAGATTCAAAGAAT+AGG | 0.332254 | 2.2:-58948268 | MS.gene02027:CDS |
ATGAAGAGATTCAAAGAATA+GGG | 0.348961 | 2.2:-58948267 | MS.gene02027:CDS |
AAGTTTAAGTGCTGAAAATC+AGG | 0.355207 | 2.2:-58948212 | MS.gene02027:CDS |
GAAAGTGAGAATGGAGTTAG+AGG | 0.361074 | 2.2:-58948365 | MS.gene02027:CDS |
ATAGATTCATGCATTGTTGT+TGG | 0.375132 | 2.2:+58949256 | None:intergenic |
TAACAATTTGGAACAAGTTA+TGG | 0.392210 | 2.2:-58948140 | MS.gene02027:CDS |
GACTGTCGGTGGTGGTGGTT+TGG | 0.395247 | 2.2:-58948014 | MS.gene02027:CDS |
TGCGATCAATATCAGATTGC+TGG | 0.414409 | 2.2:+58949035 | None:intergenic |
ATGACGCTGAATCGAGTTGC+GGG | 0.417866 | 2.2:-58948075 | MS.gene02027:CDS |
TCGGTGGTGGTGGTTTGGTT+AGG | 0.423324 | 2.2:-58948009 | MS.gene02027:CDS |
AGACCACTATCAGCTCTGTT+TGG | 0.425440 | 2.2:+58949202 | None:intergenic |
GTTAGGATGTGTAAGAATTG+TGG | 0.438375 | 2.2:-58947992 | MS.gene02027:CDS |
TCATCATGCCGCTGCGGCCG+AGG | 0.450535 | 2.2:-58948098 | MS.gene02027:CDS |
TCATGCATTGTTGTTGGAAG+AGG | 0.451659 | 2.2:+58949262 | None:intergenic |
ACAGAATGAGAAAGTGAGAA+TGG | 0.452277 | 2.2:-58948374 | MS.gene02027:intron |
TAAGTGCTGAAAATCAGGTT+TGG | 0.460640 | 2.2:-58948207 | MS.gene02027:CDS |
CAAAGGCACAAATGCCTACA+AGG | 0.486790 | 2.2:+58947941 | None:intergenic |
TGTGCCTTTGCAATGTGTGC+GGG | 0.488765 | 2.2:-58947928 | MS.gene02027:CDS |
GCGGCGACTGTCGGTGGTGG+TGG | 0.490968 | 2.2:-58948019 | MS.gene02027:CDS |
TTAGGATGTGTAAGAATTGT+GGG | 0.497897 | 2.2:-58947991 | MS.gene02027:CDS |
TGCTGAAAATCAGGTTTGGA+GGG | 0.519581 | 2.2:-58948203 | MS.gene02027:CDS |
GTGTAAGAATTGTGGGGTGA+GGG | 0.520811 | 2.2:-58947984 | MS.gene02027:CDS |
GTGCTGAAAATCAGGTTTGG+AGG | 0.526743 | 2.2:-58948204 | MS.gene02027:CDS |
ACTCGATTCAGCGTCATCCT+CGG | 0.538662 | 2.2:+58948081 | None:intergenic |
TGTGTAAGAATTGTGGGGTG+AGG | 0.539846 | 2.2:-58947985 | MS.gene02027:CDS |
GAATCGAGTTGCGGGAGTAA+TGG | 0.541126 | 2.2:-58948067 | MS.gene02027:CDS |
AGCGTCATCCTCGGCCGCAG+CGG | 0.547182 | 2.2:+58948090 | None:intergenic |
AAATGTCCAGTGTGTGACTC+TGG | 0.547650 | 2.2:-58947893 | MS.gene02027:CDS |
ACCGCGGCGACTGTCGGTGG+TGG | 0.548750 | 2.2:-58948022 | MS.gene02027:CDS |
GAGTTGCGGGAGTAATGGTC+CGG | 0.554586 | 2.2:-58948062 | MS.gene02027:CDS |
TCTGTTTGGATCACAAACAT+TGG | 0.555502 | 2.2:+58949216 | None:intergenic |
TGAATTATACAATGTTCAGA+TGG | 0.557789 | 2.2:-58949296 | MS.gene02027:CDS |
GTGTCTTCACCATCGTCAGC+CGG | 0.559591 | 2.2:+58948043 | None:intergenic |
AATGAGGCAATCAAGGATGT+TGG | 0.559955 | 2.2:-58948335 | MS.gene02027:CDS |
GAAGACACCGCGGCGACTGT+CGG | 0.571935 | 2.2:-58948028 | MS.gene02027:CDS |
TTGTGCCTTTGCAATGTGTG+CGG | 0.572306 | 2.2:-58947929 | MS.gene02027:CDS |
TCCAGTGTGTGACTCTGGCA+TGG | 0.597448 | 2.2:-58947888 | MS.gene02027:CDS |
CACTGGACATTTACGAACAG+TGG | 0.609918 | 2.2:+58947904 | None:intergenic |
GACACCGCGGCGACTGTCGG+TGG | 0.614188 | 2.2:-58948025 | MS.gene02027:CDS |
AGTAATGGTCCGGCTGACGA+TGG | 0.620198 | 2.2:-58948052 | MS.gene02027:CDS |
AGTTATGGCACATGTCAATG+AGG | 0.626941 | 2.2:-58948125 | MS.gene02027:CDS |
GATCCAAACAGAGCTGATAG+TGG | 0.638226 | 2.2:-58949205 | MS.gene02027:CDS |
GATGACGCTGAATCGAGTTG+CGG | 0.639252 | 2.2:-58948076 | MS.gene02027:CDS |
GTTATGGCACATGTCAATGA+GGG | 0.650135 | 2.2:-58948124 | MS.gene02027:CDS |
TCCATGCCAGAGTCACACAC+TGG | 0.661955 | 2.2:+58947887 | None:intergenic |
TGGACCCGCACACATTGCAA+AGG | 0.662474 | 2.2:+58947924 | None:intergenic |
GGGACATCATCATGCCGCTG+CGG | 0.686145 | 2.2:-58948104 | MS.gene02027:CDS |
ACCACCACCGACAGTCGCCG+CGG | 0.694431 | 2.2:+58948021 | None:intergenic |
TAGGATGTGTAAGAATTGTG+GGG | 0.749557 | 2.2:-58947990 | MS.gene02027:CDS |
TGACGATGGTGAAGACACCG+CGG | 0.808171 | 2.2:-58948038 | MS.gene02027:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATAAATAAATTATATT+TGG | - | chr2.2:58948531-58948550 | MS.gene02027:intron | 0.0% |
!! | AAAATAAATAAATTATATTT+GGG | - | chr2.2:58948532-58948551 | MS.gene02027:intron | 0.0% |
!! | TTTAAAAATAAATAAAAAAA+CGG | + | chr2.2:58948402-58948421 | None:intergenic | 0.0% |
!!! | TTTTATTTATTTTTAAATTA+TGG | - | chr2.2:58948405-58948424 | MS.gene02027:intron | 0.0% |
!!! | TATTTTTATGATAATCAAAA+CGG | + | chr2.2:58948518-58948537 | None:intergenic | 10.0% |
!!! | TATTTTTGCTAATATTTTTA+TGG | - | chr2.2:58948677-58948696 | MS.gene02027:intron | 10.0% |
!! | ACTTTGAATGAAAATATTAA+TGG | - | chr2.2:58948345-58948364 | MS.gene02027:CDS | 15.0% |
!! | ATAAACTAATAGTCTATAAA+AGG | - | chr2.2:58948565-58948584 | MS.gene02027:intron | 15.0% |
!! | CTTTGAATGAAAATATTAAT+GGG | - | chr2.2:58948346-58948365 | MS.gene02027:CDS | 15.0% |
!! | TTTGAATGAAAATATTAATG+GGG | - | chr2.2:58948347-58948366 | MS.gene02027:CDS | 15.0% |
!!! | TTATTTTTAAATTATGGAGT+GGG | - | chr2.2:58948411-58948430 | MS.gene02027:intron | 15.0% |
!!! | TTTAAGTTTTTTTTAACATG+CGG | - | chr2.2:58948463-58948482 | MS.gene02027:intron | 15.0% |
!!! | TTTATTTTTAAATTATGGAG+TGG | - | chr2.2:58948410-58948429 | MS.gene02027:intron | 15.0% |
!! | CAAATTGTTACGTAAATAAT+TGG | + | chr2.2:58949016-58949035 | None:intergenic | 20.0% |
!! | CAATTATTTACGTAACAATT+TGG | - | chr2.2:58949014-58949033 | MS.gene02027:intron | 20.0% |
!! | TAAATTGAGTAACTGATAAA+GGG | - | chr2.2:58948306-58948325 | MS.gene02027:CDS | 20.0% |
!! | TAATTACACATAAATAGTAC+AGG | + | chr2.2:58948747-58948766 | None:intergenic | 20.0% |
!! | TTGTGTTTGAAAAAGAAAAA+AGG | - | chr2.2:58948245-58948264 | MS.gene02027:CDS | 20.0% |
!!! | GGTGTTTTATATTTTCTAAA+AGG | - | chr2.2:58948368-58948387 | MS.gene02027:CDS | 20.0% |
!!! | TATTTTTAAATTATGGAGTG+GGG | - | chr2.2:58948412-58948431 | MS.gene02027:intron | 20.0% |
! | AAAAAATTACATGATGAGCT+AGG | + | chr2.2:58948158-58948177 | None:intergenic | 25.0% |
! | AGAGATAATTAAACAAGTGA+AGG | + | chr2.2:58948184-58948203 | None:intergenic | 25.0% |
! | ATGAAGAGATTCAAAGAATA+GGG | - | chr2.2:58948899-58948918 | MS.gene02027:intron | 25.0% |
! | CAAACATTGGATTGATAAAA+TGG | + | chr2.2:58947940-58947959 | None:intergenic | 25.0% |
! | CTAAATTGAGTAACTGATAA+AGG | - | chr2.2:58948305-58948324 | MS.gene02027:CDS | 25.0% |
! | TGAATTATACAATGTTCAGA+TGG | - | chr2.2:58947870-58947889 | MS.gene02027:CDS | 25.0% |
!! | ATTACTCTATTCTTTTGATG+AGG | + | chr2.2:58948057-58948076 | None:intergenic | 25.0% |
!! | TAACAATTTGGAACAAGTTA+TGG | - | chr2.2:58949026-58949045 | MS.gene02027:CDS | 25.0% |
!!! | AAGAGATTTTTCAACTGAAT+TGG | - | chr2.2:58948020-58948039 | MS.gene02027:CDS | 25.0% |
AAAGAATAGGGAAGCTAAAT+TGG | - | chr2.2:58948911-58948930 | MS.gene02027:intron | 30.0% | |
AACAAAAAATGAGGCAATCA+AGG | - | chr2.2:58948824-58948843 | MS.gene02027:intron | 30.0% | |
AGTTAGAGGAACAAAAAATG+AGG | - | chr2.2:58948815-58948834 | MS.gene02027:intron | 30.0% | |
ATAGATTCATGCATTGTTGT+TGG | + | chr2.2:58947913-58947932 | None:intergenic | 30.0% | |
ATGCGGAGAAAACTTAAATA+GGG | - | chr2.2:58948480-58948499 | MS.gene02027:intron | 30.0% | |
GATGAAGAGATTCAAAGAAT+AGG | - | chr2.2:58948898-58948917 | MS.gene02027:intron | 30.0% | |
TTAGGATGTGTAAGAATTGT+GGG | - | chr2.2:58949175-58949194 | MS.gene02027:CDS | 30.0% | |
!! | AAGTTTAAGTGCTGAAAATC+AGG | - | chr2.2:58948954-58948973 | MS.gene02027:intron | 30.0% |
ACAGAATGAGAAAGTGAGAA+TGG | - | chr2.2:58948792-58948811 | MS.gene02027:intron | 35.0% | |
CATGCGGAGAAAACTTAAAT+AGG | - | chr2.2:58948479-58948498 | MS.gene02027:intron | 35.0% | |
GTTAGGATGTGTAAGAATTG+TGG | - | chr2.2:58949174-58949193 | MS.gene02027:CDS | 35.0% | |
TAGGATGTGTAAGAATTGTG+GGG | - | chr2.2:58949176-58949195 | MS.gene02027:CDS | 35.0% | |
TCTGTTTGGATCACAAACAT+TGG | + | chr2.2:58947953-58947972 | None:intergenic | 35.0% | |
! | ACTCTATTCTTTTGATGAGG+TGG | + | chr2.2:58948054-58948073 | None:intergenic | 35.0% |
! | TTGTGTTGTTACTACCTTGT+AGG | - | chr2.2:58949211-58949230 | MS.gene02027:CDS | 35.0% |
!! | CTTGAACGTTTTCTTTGAAG+AGG | + | chr2.2:58948003-58948022 | None:intergenic | 35.0% |
!! | TAAGTGCTGAAAATCAGGTT+TGG | - | chr2.2:58948959-58948978 | MS.gene02027:intron | 35.0% |
AATGAGGCAATCAAGGATGT+TGG | - | chr2.2:58948831-58948850 | MS.gene02027:intron | 40.0% | |
AGTTATGGCACATGTCAATG+AGG | - | chr2.2:58949041-58949060 | MS.gene02027:CDS | 40.0% | |
GAAAGTGAGAATGGAGTTAG+AGG | - | chr2.2:58948801-58948820 | MS.gene02027:intron | 40.0% | |
GTTATGGCACATGTCAATGA+GGG | - | chr2.2:58949042-58949061 | MS.gene02027:CDS | 40.0% | |
TGCGATCAATATCAGATTGC+TGG | + | chr2.2:58948134-58948153 | None:intergenic | 40.0% | |
TGCTGAAAATCAGGTTTGGA+GGG | - | chr2.2:58948963-58948982 | MS.gene02027:intron | 40.0% | |
! | TCATGCATTGTTGTTGGAAG+AGG | + | chr2.2:58947907-58947926 | None:intergenic | 40.0% |
AAATGTCCAGTGTGTGACTC+TGG | - | chr2.2:58949273-58949292 | MS.gene02027:CDS | 45.0% | |
AGACCACTATCAGCTCTGTT+TGG | + | chr2.2:58947967-58947986 | None:intergenic | 45.0% | |
CACTGGACATTTACGAACAG+TGG | + | chr2.2:58949265-58949284 | None:intergenic | 45.0% | |
GATCCAAACAGAGCTGATAG+TGG | - | chr2.2:58947961-58947980 | MS.gene02027:CDS | 45.0% | |
GTGCTGAAAATCAGGTTTGG+AGG | - | chr2.2:58948962-58948981 | MS.gene02027:intron | 45.0% | |
GTGTAAGAATTGTGGGGTGA+GGG | - | chr2.2:58949182-58949201 | MS.gene02027:CDS | 45.0% | |
TGTGTAAGAATTGTGGGGTG+AGG | - | chr2.2:58949181-58949200 | MS.gene02027:CDS | 45.0% | |
TTGTGCCTTTGCAATGTGTG+CGG | - | chr2.2:58949237-58949256 | MS.gene02027:CDS | 45.0% | |
! | CAAAGGCACAAATGCCTACA+AGG | + | chr2.2:58949228-58949247 | None:intergenic | 45.0% |
!! | AAATAAATAAATTATATTTG+GGG | - | chr2.2:58948533-58948552 | MS.gene02027:intron | 5.0% |
ACTCGATTCAGCGTCATCCT+CGG | + | chr2.2:58949088-58949107 | None:intergenic | 50.0% | |
TGTGCCTTTGCAATGTGTGC+GGG | - | chr2.2:58949238-58949257 | MS.gene02027:CDS | 50.0% | |
! | ATGACGCTGAATCGAGTTGC+GGG | - | chr2.2:58949091-58949110 | MS.gene02027:CDS | 50.0% |
! | GAATCGAGTTGCGGGAGTAA+TGG | - | chr2.2:58949099-58949118 | MS.gene02027:CDS | 50.0% |
! | GATGACGCTGAATCGAGTTG+CGG | - | chr2.2:58949090-58949109 | MS.gene02027:CDS | 50.0% |
AGTAATGGTCCGGCTGACGA+TGG | - | chr2.2:58949114-58949133 | MS.gene02027:CDS | 55.0% | |
GAGTTGCGGGAGTAATGGTC+CGG | - | chr2.2:58949104-58949123 | MS.gene02027:CDS | 55.0% | |
GTGTCTTCACCATCGTCAGC+CGG | + | chr2.2:58949126-58949145 | None:intergenic | 55.0% | |
TCCAGTGTGTGACTCTGGCA+TGG | - | chr2.2:58949278-58949297 | MS.gene02027:CDS | 55.0% | |
TCCATGCCAGAGTCACACAC+TGG | + | chr2.2:58949282-58949301 | None:intergenic | 55.0% | |
TGACGATGGTGAAGACACCG+CGG | - | chr2.2:58949128-58949147 | MS.gene02027:CDS | 55.0% | |
TGGACCCGCACACATTGCAA+AGG | + | chr2.2:58949245-58949264 | None:intergenic | 55.0% | |
!! | TCGGTGGTGGTGGTTTGGTT+AGG | - | chr2.2:58949157-58949176 | MS.gene02027:CDS | 55.0% |
GGGACATCATCATGCCGCTG+CGG | - | chr2.2:58949062-58949081 | MS.gene02027:CDS | 60.0% | |
!! | GACTGTCGGTGGTGGTGGTT+TGG | - | chr2.2:58949152-58949171 | MS.gene02027:CDS | 60.0% |
GAAGACACCGCGGCGACTGT+CGG | - | chr2.2:58949138-58949157 | MS.gene02027:CDS | 65.0% | |
ACCACCACCGACAGTCGCCG+CGG | + | chr2.2:58949148-58949167 | None:intergenic | 70.0% | |
AGCGTCATCCTCGGCCGCAG+CGG | + | chr2.2:58949079-58949098 | None:intergenic | 70.0% | |
TCATCATGCCGCTGCGGCCG+AGG | - | chr2.2:58949068-58949087 | MS.gene02027:CDS | 70.0% | |
ACCGCGGCGACTGTCGGTGG+TGG | - | chr2.2:58949144-58949163 | MS.gene02027:CDS | 75.0% | |
GACACCGCGGCGACTGTCGG+TGG | - | chr2.2:58949141-58949160 | MS.gene02027:CDS | 75.0% | |
! | GCGGCGACTGTCGGTGGTGG+TGG | - | chr2.2:58949147-58949166 | MS.gene02027:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 58947859 | 58949329 | 58947859 | ID=MS.gene02027 |
chr2.2 | mRNA | 58947859 | 58949329 | 58947859 | ID=MS.gene02027.t1;Parent=MS.gene02027 |
chr2.2 | exon | 58949021 | 58949329 | 58949021 | ID=MS.gene02027.t1.exon1;Parent=MS.gene02027.t1 |
chr2.2 | CDS | 58949021 | 58949329 | 58949021 | ID=cds.MS.gene02027.t1;Parent=MS.gene02027.t1 |
chr2.2 | exon | 58947859 | 58948392 | 58947859 | ID=MS.gene02027.t1.exon2;Parent=MS.gene02027.t1 |
chr2.2 | CDS | 58947859 | 58948392 | 58947859 | ID=cds.MS.gene02027.t1;Parent=MS.gene02027.t1 |
Gene Sequence |
Protein sequence |