Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020439.t1 | XP_003602901.2 | 96.6 | 963 | 33 | 0 | 1 | 963 | 1 | 963 | 0.00E+00 | 1493.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020439.t1 | P0DMS1 | 42.0 | 979 | 486 | 20 | 1 | 947 | 1 | 929 | 3.5e-172 | 607.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020439.t1 | G7J527 | 95.6 | 945 | 40 | 1 | 21 | 963 | 16 | 960 | 0.0e+00 | 1429.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020439 | MS.gene065209 | PPI |
| MS.gene020439 | MS.gene046432 | PPI |
| MS.gene020439 | MS.gene027791 | PPI |
| MS.gene020439 | MS.gene069111 | PPI |
| MS.gene020439 | MS.gene070686 | PPI |
| MS.gene020439 | MS.gene048346 | PPI |
| MS.gene020439 | MS.gene008915 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020439.t1 | MTR_3g100190 | 96.296 | 945 | 33 | 1 | 21 | 963 | 16 | 960 | 0.0 | 1842 |
| MS.gene020439.t1 | MTR_5g066340 | 56.873 | 1004 | 368 | 19 | 1 | 963 | 1 | 980 | 0.0 | 1021 |
| MS.gene020439.t1 | MTR_8g471130 | 45.009 | 551 | 266 | 13 | 1 | 526 | 1 | 539 | 9.49e-131 | 419 |
| MS.gene020439.t1 | MTR_5g032060 | 47.269 | 476 | 231 | 6 | 1 | 470 | 1 | 462 | 6.63e-124 | 405 |
| MS.gene020439.t1 | MTR_5g032060 | 34.917 | 421 | 213 | 12 | 546 | 952 | 769 | 1142 | 7.59e-61 | 226 |
| MS.gene020439.t1 | MTR_1g103160 | 32.113 | 355 | 200 | 8 | 1 | 343 | 1 | 326 | 2.91e-38 | 156 |
| MS.gene020439.t1 | MTR_1g103160 | 32.113 | 355 | 200 | 8 | 1 | 343 | 4 | 329 | 3.32e-38 | 155 |
| MS.gene020439.t1 | MTR_1g071540 | 33.069 | 378 | 178 | 13 | 10 | 340 | 15 | 364 | 5.03e-36 | 149 |
| MS.gene020439.t1 | MTR_7g095410 | 58.333 | 96 | 40 | 0 | 10 | 105 | 13 | 108 | 9.64e-32 | 135 |
| MS.gene020439.t1 | MTR_7g095410 | 58.333 | 96 | 40 | 0 | 10 | 105 | 13 | 108 | 1.03e-31 | 135 |
| MS.gene020439.t1 | MTR_5g006520 | 31.273 | 275 | 138 | 5 | 10 | 276 | 13 | 244 | 3.39e-30 | 130 |
| MS.gene020439.t1 | MTR_5g006520 | 43.662 | 142 | 69 | 2 | 10 | 151 | 13 | 143 | 6.18e-30 | 129 |
| MS.gene020439.t1 | MTR_5g075490 | 52.747 | 91 | 43 | 0 | 1 | 91 | 12 | 102 | 2.84e-26 | 115 |
| MS.gene020439.t1 | MTR_1g103160 | 30.031 | 323 | 185 | 8 | 33 | 343 | 1 | 294 | 2.09e-25 | 114 |
| MS.gene020439.t1 | MTR_7g095410 | 56.164 | 73 | 32 | 0 | 33 | 105 | 1 | 73 | 1.64e-19 | 95.5 |
| MS.gene020439.t1 | MTR_7g108070 | 50.000 | 78 | 36 | 2 | 12 | 86 | 11 | 88 | 1.73e-19 | 90.9 |
| MS.gene020439.t1 | MTR_1g088965 | 45.570 | 79 | 42 | 1 | 12 | 89 | 17 | 95 | 1.75e-17 | 87.0 |
| MS.gene020439.t1 | MTR_3g467610 | 62.069 | 58 | 22 | 0 | 33 | 90 | 15 | 72 | 4.86e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020439.t1 | AT1G58215 | 45.510 | 991 | 448 | 23 | 1 | 953 | 1 | 937 | 0.0 | 744 |
| MS.gene020439.t1 | AT1G09720 | 42.381 | 991 | 473 | 27 | 1 | 962 | 1 | 922 | 0.0 | 661 |
| MS.gene020439.t1 | AT5G10500 | 40.506 | 632 | 315 | 18 | 1 | 618 | 1 | 585 | 7.39e-124 | 397 |
| MS.gene020439.t1 | AT5G10500 | 37.615 | 218 | 132 | 2 | 734 | 950 | 627 | 841 | 1.02e-40 | 162 |
| MS.gene020439.t1 | AT2G22560 | 34.783 | 391 | 187 | 6 | 568 | 951 | 613 | 942 | 7.01e-63 | 231 |
| MS.gene020439.t1 | AT3G22790 | 34.576 | 295 | 144 | 9 | 10 | 300 | 13 | 262 | 6.96e-35 | 145 |
| MS.gene020439.t1 | AT3G22790 | 34.576 | 295 | 144 | 9 | 10 | 300 | 13 | 262 | 6.96e-35 | 145 |
| MS.gene020439.t1 | AT3G22790 | 34.576 | 295 | 144 | 9 | 10 | 300 | 13 | 262 | 6.96e-35 | 145 |
| MS.gene020439.t1 | AT4G02710 | 30.795 | 302 | 176 | 6 | 10 | 291 | 13 | 301 | 4.37e-32 | 135 |
| MS.gene020439.t1 | AT1G03080 | 33.221 | 298 | 149 | 10 | 10 | 278 | 12 | 288 | 7.15e-32 | 135 |
| MS.gene020439.t1 | AT1G03080 | 33.221 | 298 | 149 | 10 | 10 | 278 | 12 | 288 | 7.15e-32 | 135 |
| MS.gene020439.t1 | AT1G03080 | 33.221 | 298 | 149 | 10 | 10 | 278 | 12 | 288 | 7.15e-32 | 135 |
| MS.gene020439.t1 | AT4G14760 | 33.333 | 261 | 128 | 5 | 10 | 270 | 13 | 227 | 7.54e-32 | 135 |
| MS.gene020439.t1 | AT4G14760 | 33.333 | 261 | 128 | 5 | 10 | 270 | 13 | 227 | 7.54e-32 | 135 |
| MS.gene020439.t1 | AT4G14760 | 33.333 | 261 | 128 | 5 | 10 | 270 | 13 | 227 | 7.54e-32 | 135 |
| MS.gene020439.t1 | AT4G14760 | 33.333 | 261 | 128 | 5 | 10 | 270 | 13 | 227 | 7.54e-32 | 135 |
| MS.gene020439.t1 | AT2G30500 | 52.809 | 89 | 42 | 0 | 3 | 91 | 14 | 102 | 4.87e-24 | 107 |
| MS.gene020439.t1 | AT2G30500 | 52.809 | 89 | 42 | 0 | 3 | 91 | 14 | 102 | 4.87e-24 | 107 |
| MS.gene020439.t1 | AT2G30500 | 52.809 | 89 | 42 | 0 | 3 | 91 | 13 | 101 | 5.05e-24 | 107 |
| MS.gene020439.t1 | AT5G58320 | 48.913 | 92 | 47 | 0 | 3 | 94 | 14 | 105 | 1.38e-22 | 103 |
| MS.gene020439.t1 | AT5G58320 | 48.913 | 92 | 47 | 0 | 3 | 94 | 14 | 105 | 1.38e-22 | 103 |
| MS.gene020439.t1 | AT5G58320 | 48.913 | 92 | 47 | 0 | 3 | 94 | 14 | 105 | 1.50e-22 | 103 |
| MS.gene020439.t1 | AT5G58320 | 48.913 | 92 | 47 | 0 | 3 | 94 | 14 | 105 | 1.50e-22 | 103 |
| MS.gene020439.t1 | AT2G47920 | 46.809 | 94 | 47 | 2 | 12 | 104 | 10 | 101 | 5.43e-22 | 96.3 |
| MS.gene020439.t1 | AT2G47920 | 46.809 | 94 | 47 | 2 | 12 | 104 | 10 | 101 | 5.43e-22 | 96.3 |
| MS.gene020439.t1 | AT1G03470 | 53.947 | 76 | 34 | 1 | 12 | 86 | 8 | 83 | 9.85e-21 | 93.6 |
| MS.gene020439.t1 | AT1G03470 | 53.947 | 76 | 34 | 1 | 12 | 86 | 8 | 83 | 9.85e-21 | 93.6 |
| MS.gene020439.t1 | AT1G03470 | 53.947 | 76 | 34 | 1 | 12 | 86 | 8 | 83 | 9.85e-21 | 93.6 |
| MS.gene020439.t1 | AT1G03470 | 53.947 | 76 | 34 | 1 | 12 | 86 | 8 | 83 | 9.85e-21 | 93.6 |
| MS.gene020439.t1 | AT5G58320 | 48.387 | 62 | 32 | 0 | 33 | 94 | 1 | 62 | 4.99e-12 | 69.7 |
| MS.gene020439.t1 | AT4G03153 | 39.024 | 82 | 45 | 2 | 12 | 88 | 7 | 88 | 5.13e-12 | 67.0 |
Find 137 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACCTCTTTCAACTTATTT+AGG | 0.097951 | 3.3:+82622253 | None:intergenic |
| CAAGCTTCAGAAAGAAATTT+TGG | 0.145445 | 3.3:-82622475 | MS.gene020439:CDS |
| TTTAATCTTGAACATCTTTC+AGG | 0.163584 | 3.3:-82621694 | MS.gene020439:CDS |
| TTTGGGATACTTGGAGGTTT+AGG | 0.191977 | 3.3:+82622636 | None:intergenic |
| TTGAATCAGATGTTTGTAAA+TGG | 0.230787 | 3.3:-82621325 | MS.gene020439:CDS |
| GAAGTTCCAACAATCTTTAC+AGG | 0.233406 | 3.3:-82620505 | MS.gene020439:CDS |
| TCCACAAAATTTATCAGTTC+TGG | 0.242133 | 3.3:+82622864 | None:intergenic |
| TACCTCTTTCAACTTATTTA+GGG | 0.249240 | 3.3:+82622254 | None:intergenic |
| TTGGGATACTTGGAGGTTTA+GGG | 0.251548 | 3.3:+82622637 | None:intergenic |
| TCTCTCAAATGTCTAAATAT+TGG | 0.252662 | 3.3:+82620393 | None:intergenic |
| TAACGACGCACGGGCTTTAA+TGG | 0.252925 | 3.3:-82622307 | MS.gene020439:CDS |
| GGAGGTAATGGATTAGTTTC+AGG | 0.253642 | 3.3:+82622696 | None:intergenic |
| ATATATGGAAACATCTATAT+TGG | 0.275428 | 3.3:+82619910 | None:intergenic |
| CCTTTGAGGTCTTTCTTATT+CGG | 0.277996 | 3.3:-82620027 | MS.gene020439:CDS |
| TTGAGGAGAATTTAGAATTC+TGG | 0.280446 | 3.3:-82620560 | MS.gene020439:CDS |
| TGTAGGTAAGGTTGTTAGTT+TGG | 0.284837 | 3.3:-82621950 | MS.gene020439:CDS |
| TACAAATTTGAAAACCTTAG+AGG | 0.285571 | 3.3:-82622174 | MS.gene020439:CDS |
| AATGAACCTCCTTAACCTTT+TGG | 0.290447 | 3.3:+82622196 | None:intergenic |
| TAAGAACTGAATTATCATTA+TGG | 0.295675 | 3.3:-82620368 | MS.gene020439:CDS |
| CCTTTCCAAGCAAACGAATC+AGG | 0.298097 | 3.3:-82622145 | MS.gene020439:CDS |
| AGATGAGGAAGGGGAGAATT+TGG | 0.301275 | 3.3:-82621650 | MS.gene020439:CDS |
| CTTAAAATCATTGATGATAA+TGG | 0.318836 | 3.3:-82622930 | MS.gene020439:CDS |
| AATCCAACAATTCAATGTTC+AGG | 0.323293 | 3.3:-82622531 | MS.gene020439:CDS |
| GAAATTGAAGACAAAGTTAC+AGG | 0.328085 | 3.3:-82622390 | MS.gene020439:CDS |
| AAACCTGAACATTGAATTGT+TGG | 0.328621 | 3.3:+82622528 | None:intergenic |
| GAAGGTTTGAGTTATGTAAA+AGG | 0.332066 | 3.3:-82620144 | MS.gene020439:CDS |
| GTTTATCTCTTCATCCTTAG+TGG | 0.332491 | 3.3:+82620890 | None:intergenic |
| TATATGGAAACATCTATATT+GGG | 0.335531 | 3.3:+82619911 | None:intergenic |
| TCAGGACAAAACAATCAAAA+TGG | 0.336738 | 3.3:-82623441 | MS.gene020439:CDS |
| ATTCTGTAATGGACTTGTTC+AGG | 0.343736 | 3.3:+82622747 | None:intergenic |
| AAAACCTTCTTTGGGATACT+TGG | 0.346431 | 3.3:+82622627 | None:intergenic |
| TGGAAAGGAAGTTACCTCTA+AGG | 0.346905 | 3.3:+82622160 | None:intergenic |
| TTAAGTCCTGTAAAGATTGT+TGG | 0.351780 | 3.3:+82620499 | None:intergenic |
| AAATTCCGCTTCGAAATTGA+TGG | 0.356675 | 3.3:-82620588 | MS.gene020439:CDS |
| GGAAAAGCTTGAGGAAGATT+CGG | 0.356754 | 3.3:-82622019 | MS.gene020439:CDS |
| TAACAAAAGGATGAAAGAAT+TGG | 0.369828 | 3.3:-82621803 | MS.gene020439:CDS |
| TAAAGTTGAATCACTTGATC+TGG | 0.371940 | 3.3:-82621377 | MS.gene020439:CDS |
| ATCTCCCTGATTCGTTTGCT+TGG | 0.373115 | 3.3:+82622140 | None:intergenic |
| ATCCGGATTTGTTTCTGAAC+TGG | 0.375791 | 3.3:+82620848 | None:intergenic |
| TCTGTTTGGTTATTAGGGTT+AGG | 0.381092 | 3.3:+82622675 | None:intergenic |
| AATATCGATATGTCATCAAT+TGG | 0.412156 | 3.3:-82620681 | MS.gene020439:CDS |
| TTATTAGGGTTAGGAGGTAA+TGG | 0.417397 | 3.3:+82622684 | None:intergenic |
| GAAAAGCTTGAGGAAGATTC+GGG | 0.417598 | 3.3:-82622018 | MS.gene020439:CDS |
| AGAAGCATACCAAAAGGTTA+AGG | 0.421409 | 3.3:-82622205 | MS.gene020439:CDS |
| CCTCTTGAAAACGCTGTTCA+AGG | 0.426579 | 3.3:-82620792 | MS.gene020439:CDS |
| ACGCTGTTCAAGGAGATAAC+AGG | 0.426918 | 3.3:-82620782 | MS.gene020439:CDS |
| AAACTGAGAAAGAGTTTGTA+AGG | 0.428032 | 3.3:-82622446 | MS.gene020439:CDS |
| GATATGCTTGAACATGATAT+AGG | 0.429964 | 3.3:-82622063 | MS.gene020439:CDS |
| CTGTATTGTCTCTGTAGTGC+TGG | 0.432223 | 3.3:+82619958 | None:intergenic |
| GCCGCGCTAGAATGCCTTTG+AGG | 0.434029 | 3.3:-82620041 | MS.gene020439:CDS |
| AGAACACAATGAAGTATTGC+AGG | 0.435549 | 3.3:-82620343 | MS.gene020439:CDS |
| TCTTGTAAGCTACACATTGA+TGG | 0.441202 | 3.3:+82620300 | None:intergenic |
| CATCAAGCTGCAAAGTTTCA+AGG | 0.443442 | 3.3:-82620219 | MS.gene020439:CDS |
| TGAAAGAGAAAAGATTATGT+TGG | 0.446928 | 3.3:-82621296 | MS.gene020439:CDS |
| GAGGTAATGGATTAGTTTCA+GGG | 0.448765 | 3.3:+82622697 | None:intergenic |
| ACAAAGCTTAGAAGAGGATA+AGG | 0.454706 | 3.3:-82621854 | MS.gene020439:CDS |
| CATCTTCGTCTATTCTGTAA+TGG | 0.454957 | 3.3:+82622736 | None:intergenic |
| TGTGCAAGATCTAACACAAC+AGG | 0.463867 | 3.3:-82621434 | MS.gene020439:CDS |
| AACAGATATGGAGGAGATAG+TGG | 0.465013 | 3.3:-82622961 | MS.gene020439:intron |
| ACCTTCTTTGGGATACTTGG+AGG | 0.469688 | 3.3:+82622630 | None:intergenic |
| ATCACTTGATCTGGAAACTA+AGG | 0.473175 | 3.3:-82621368 | MS.gene020439:CDS |
| AAGAGAAAAGATTATGTTGG+AGG | 0.476441 | 3.3:-82621293 | MS.gene020439:CDS |
| AAGAACTATAACGATGTAAC+GGG | 0.477650 | 3.3:-82621253 | MS.gene020439:CDS |
| GGTGGTGGGTTAGCCACATC+AGG | 0.479597 | 3.3:-82623459 | MS.gene020439:CDS |
| TCAATGTTCAGGTTTGAGTA+AGG | 0.483983 | 3.3:-82622520 | MS.gene020439:CDS |
| CCTGATTCGTTTGCTTGGAA+AGG | 0.489020 | 3.3:+82622145 | None:intergenic |
| GACAAAACAATCAAAATGGC+TGG | 0.492493 | 3.3:-82623437 | MS.gene020439:CDS |
| CCAATGCATATTCATGGTGG+TGG | 0.493918 | 3.3:-82623474 | MS.gene020439:CDS |
| GAAGATCGTGCTGAAAATAT+CGG | 0.494455 | 3.3:-82621520 | MS.gene020439:CDS |
| CAGCAACCAATGCATATTCA+TGG | 0.495304 | 3.3:-82623480 | MS.gene020439:CDS |
| CGAAATTGATGGTTTGCTTG+AGG | 0.497327 | 3.3:-82620577 | MS.gene020439:CDS |
| GAAGAATGTAGTTGCCACTA+AGG | 0.498077 | 3.3:-82620904 | MS.gene020439:CDS |
| ATTCAGAAAATAGTAACAAA+AGG | 0.498532 | 3.3:-82621816 | MS.gene020439:CDS |
| TAATGCTCTATATGCTCTAA+AGG | 0.501026 | 3.3:+82622836 | None:intergenic |
| AGATGATAAGTCTAGATTGA+AGG | 0.502870 | 3.3:-82621482 | MS.gene020439:CDS |
| TTTCTAACAGTGAAAGGGAA+TGG | 0.507447 | 3.3:+82620613 | None:intergenic |
| TCTATGTTGCTATCAAGAAA+AGG | 0.508385 | 3.3:-82622594 | MS.gene020439:CDS |
| AGAATTTAGAATTCTGGTTG+AGG | 0.510468 | 3.3:-82620554 | MS.gene020439:CDS |
| TGTGAAACTAGATGAGGAAG+GGG | 0.510876 | 3.3:-82621659 | MS.gene020439:CDS |
| AAGGATGAAAGAATTGGAAG+AGG | 0.511792 | 3.3:-82621797 | MS.gene020439:CDS |
| GAGATGATCGATGAGCTTGT+AGG | 0.511931 | 3.3:-82621967 | MS.gene020439:CDS |
| ACCTCCAAGTATCCCAAAGA+AGG | 0.513746 | 3.3:-82622631 | MS.gene020439:CDS |
| AACCCTAAATAAGTTGAAAG+AGG | 0.513748 | 3.3:-82622256 | MS.gene020439:CDS |
| AGCTAGAGAAGCATACCAAA+AGG | 0.514253 | 3.3:-82622211 | MS.gene020439:CDS |
| GATCGATGAGCTTGTAGGTA+AGG | 0.515149 | 3.3:-82621962 | MS.gene020439:CDS |
| GTGGTGCGAGGACTTTCATC+CGG | 0.521655 | 3.3:+82620831 | None:intergenic |
| CTTTCCAAGCAAACGAATCA+GGG | 0.523805 | 3.3:-82622144 | MS.gene020439:CDS |
| TAAGGTTGTTAGTTTGGAAA+CGG | 0.528715 | 3.3:-82621944 | MS.gene020439:CDS |
| ACGGCAGTTACTTCTCAGAA+TGG | 0.533133 | 3.3:-82621925 | MS.gene020439:CDS |
| GTACTAGCTATATCTGAAGA+TGG | 0.534842 | 3.3:+82620744 | None:intergenic |
| GTTTGGTTATTAGGGTTAGG+AGG | 0.537743 | 3.3:+82622678 | None:intergenic |
| TACCAGTTCAGAAACAAATC+CGG | 0.541447 | 3.3:-82620850 | MS.gene020439:CDS |
| GAAGAACTATAACGATGTAA+CGG | 0.541460 | 3.3:-82621254 | MS.gene020439:CDS |
| GTTTCTAGTGAACTACAAGA+AGG | 0.543650 | 3.3:-82620162 | MS.gene020439:CDS |
| AGGCATTCTAGCGCGGCTTG+TGG | 0.544301 | 3.3:+82620047 | None:intergenic |
| TGAAGAATTGAGTCAAGCAA+TGG | 0.548068 | 3.3:-82620094 | MS.gene020439:CDS |
| AGTTACTTCTCAGAATGGAT+TGG | 0.549899 | 3.3:-82621920 | MS.gene020439:CDS |
| AAAGAGCGGAAATGTACTAC+AGG | 0.550960 | 3.3:-82622893 | MS.gene020439:CDS |
| CGCTGTTCAAGGAGATAACA+GGG | 0.554114 | 3.3:-82620781 | MS.gene020439:CDS |
| AGCAATCGTGAATGATGCTA+AGG | 0.558867 | 3.3:-82621542 | MS.gene020439:CDS |
| CATGTTGCAAGAGAGGATTA+AGG | 0.559763 | 3.3:-82622040 | MS.gene020439:CDS |
| GAAGAATTGAGTCAAGCAAT+GGG | 0.560171 | 3.3:-82620093 | MS.gene020439:CDS |
| ATATAGGCATGTTGCAAGAG+AGG | 0.570909 | 3.3:-82622047 | MS.gene020439:CDS |
| CAAATATTTAACAGATATGG+AGG | 0.572308 | 3.3:-82622970 | MS.gene020439:intron |
| ATGTGAAACTAGATGAGGAA+GGG | 0.573018 | 3.3:-82621660 | MS.gene020439:CDS |
| TATGGAGGAGATAGTGGCTG+AGG | 0.575060 | 3.3:-82622955 | MS.gene020439:CDS |
| AATGTGAAACTAGATGAGGA+AGG | 0.576478 | 3.3:-82621661 | MS.gene020439:CDS |
| CCACCACCATGAATATGCAT+TGG | 0.576750 | 3.3:+82623474 | None:intergenic |
| GAGGATTAAGGAAAAGCTTG+AGG | 0.577900 | 3.3:-82622028 | MS.gene020439:CDS |
| GAAATATGATCATCTATCAA+AGG | 0.578698 | 3.3:-82622808 | MS.gene020439:CDS |
| TTCTAATGGAAAACCAAGTG+AGG | 0.579702 | 3.3:-82621605 | MS.gene020439:CDS |
| AAATATACAAAGCTTAGAAG+AGG | 0.584471 | 3.3:-82621860 | MS.gene020439:CDS |
| AGCATACCAAAAGGTTAAGG+AGG | 0.605993 | 3.3:-82622202 | MS.gene020439:CDS |
| CCGAATAAGAAAGACCTCAA+AGG | 0.612634 | 3.3:+82620027 | None:intergenic |
| CAATGCATATTCATGGTGGT+GGG | 0.614885 | 3.3:-82623473 | MS.gene020439:CDS |
| ACTTGATCTGGAAACTAAGG+AGG | 0.615217 | 3.3:-82621365 | MS.gene020439:CDS |
| TGGCTGGAACAAAGTCTCCA+AGG | 0.616166 | 3.3:-82623421 | MS.gene020439:intron |
| TTTCTTGATAGCAACATAGA+CGG | 0.618261 | 3.3:+82622597 | None:intergenic |
| ACCTCAAAGGCATTCTAGCG+CGG | 0.618902 | 3.3:+82620040 | None:intergenic |
| ACATAGAAGAAGTGTCAGCT+CGG | 0.622596 | 3.3:-82622568 | MS.gene020439:CDS |
| AGGCGCTTCTTCGACTAGAG+TGG | 0.624160 | 3.3:+82620812 | None:intergenic |
| ACGGGCTTTAATGGCAGCCA+CGG | 0.624491 | 3.3:-82622298 | MS.gene020439:CDS |
| GAATCAAGTTGAAGAAACAA+AGG | 0.626725 | 3.3:-82620005 | MS.gene020439:CDS |
| ATATGGAAACATCTATATTG+GGG | 0.629685 | 3.3:+82619912 | None:intergenic |
| TAATTGAAGATAACGACGCA+CGG | 0.633150 | 3.3:-82622317 | MS.gene020439:CDS |
| CACCAACATGTTGAAAACAC+AGG | 0.639859 | 3.3:-82620705 | MS.gene020439:CDS |
| GGTACAATCACGATCATCTG+AGG | 0.641129 | 3.3:-82622235 | MS.gene020439:CDS |
| AATTGAAGATAACGACGCAC+GGG | 0.642654 | 3.3:-82622316 | MS.gene020439:CDS |
| TTTACATGAATTTAACGCCG+TGG | 0.662543 | 3.3:+82622281 | None:intergenic |
| AACGGGCAAGCTCAACAATG+TGG | 0.678594 | 3.3:-82621236 | MS.gene020439:CDS |
| GTTCAAGGAGATAACAGGGA+GGG | 0.679032 | 3.3:-82620777 | MS.gene020439:CDS |
| GCAAACCATCAATTTCGAAG+CGG | 0.679223 | 3.3:+82620583 | None:intergenic |
| CAACCAATGCATATTCATGG+TGG | 0.706967 | 3.3:-82623477 | MS.gene020439:CDS |
| TGACTCATTTGCTCAAAGAG+CGG | 0.707239 | 3.3:-82622907 | MS.gene020439:CDS |
| CATGAAACAAGAAATCAACA+AGG | 0.709885 | 3.3:-82620184 | MS.gene020439:CDS |
| TCTTCGACTAGAGTGGTGCG+AGG | 0.734077 | 3.3:+82620819 | None:intergenic |
| TGTTCAAGGAGATAACAGGG+AGG | 0.779882 | 3.3:-82620778 | MS.gene020439:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAATATTTAACAGATA+TGG | - | chr3.3:82620444-82620463 | MS.gene020439:CDS | 15.0% |
| !! | ACATTGTTTAGATATATAAT+TGG | - | chr3.3:82620304-82620323 | MS.gene020439:CDS | 15.0% |
| !! | AGTTAACAAATTTAACATAT+AGG | - | chr3.3:82622309-82622328 | MS.gene020439:CDS | 15.0% |
| !!! | ATGTTAAATTTGTTAACTTA+TGG | + | chr3.3:82622307-82622326 | None:intergenic | 15.0% |
| !! | ACAAAATGATTCATAATGTA+CGG | - | chr3.3:82620343-82620362 | MS.gene020439:CDS | 20.0% |
| !! | ATTCAGAAAATAGTAACAAA+AGG | - | chr3.3:82621601-82621620 | MS.gene020439:CDS | 20.0% |
| !! | TAAGAACTGAATTATCATTA+TGG | - | chr3.3:82623049-82623068 | MS.gene020439:intron | 20.0% |
| !!! | AAGAATAAAAGCTTTTCTAA+TGG | - | chr3.3:82621798-82621817 | MS.gene020439:CDS | 20.0% |
| !!! | AATTTCCCAATATTTTTCAT+AGG | + | chr3.3:82621013-82621032 | None:intergenic | 20.0% |
| !!! | ATTCGTTTTAATTTTATTGC+GGG | - | chr3.3:82620141-82620160 | MS.gene020439:CDS | 20.0% |
| !!! | CATTCGTTTTAATTTTATTG+CGG | - | chr3.3:82620140-82620159 | MS.gene020439:CDS | 20.0% |
| !!! | CTTAAAATCATTGATGATAA+TGG | - | chr3.3:82620487-82620506 | MS.gene020439:CDS | 20.0% |
| !!! | TGAAGGATAATATTGATTTT+AGG | - | chr3.3:82621952-82621971 | MS.gene020439:CDS | 20.0% |
| !!! | TGCATATCTAATTAGTTTTA+TGG | + | chr3.3:82622466-82622485 | None:intergenic | 20.0% |
| ! | AAATATACAAAGCTTAGAAG+AGG | - | chr3.3:82621557-82621576 | MS.gene020439:CDS | 25.0% |
| ! | AATATCGATATGTCATCAAT+TGG | - | chr3.3:82622736-82622755 | MS.gene020439:CDS | 25.0% |
| ! | AGCATTCCTATGAAAAATAT+TGG | - | chr3.3:82621004-82621023 | MS.gene020439:intron | 25.0% |
| ! | ATCATGTACTACTAAGAAAA+TGG | + | chr3.3:82620264-82620283 | None:intergenic | 25.0% |
| ! | ATCCATTATCATTAATTCCA+TGG | - | chr3.3:82620085-82620104 | MS.gene020439:CDS | 25.0% |
| ! | CAAATATTTAACAGATATGG+AGG | - | chr3.3:82620447-82620466 | MS.gene020439:CDS | 25.0% |
| ! | GAAATATGATCATCTATCAA+AGG | - | chr3.3:82620609-82620628 | MS.gene020439:CDS | 25.0% |
| ! | GCATTCCTATGAAAAATATT+GGG | - | chr3.3:82621005-82621024 | MS.gene020439:intron | 25.0% |
| ! | TAACAAAAGGATGAAAGAAT+TGG | - | chr3.3:82621614-82621633 | MS.gene020439:CDS | 25.0% |
| ! | TACAAATTTGAAAACCTTAG+AGG | - | chr3.3:82621243-82621262 | MS.gene020439:CDS | 25.0% |
| ! | TACCTCTTTCAACTTATTTA+GGG | + | chr3.3:82621166-82621185 | None:intergenic | 25.0% |
| ! | TCTCTCAAATGTCTAAATAT+TGG | + | chr3.3:82623027-82623046 | None:intergenic | 25.0% |
| ! | TGAAAGAGAAAAGATTATGT+TGG | - | chr3.3:82622121-82622140 | MS.gene020439:CDS | 25.0% |
| ! | TTCCATGGAATTAATGATAA+TGG | + | chr3.3:82620090-82620109 | None:intergenic | 25.0% |
| ! | TTGAATCAGATGTTTGTAAA+TGG | - | chr3.3:82622092-82622111 | MS.gene020439:CDS | 25.0% |
| ! | TTTAATCTTGAACATCTTTC+AGG | - | chr3.3:82621723-82621742 | MS.gene020439:CDS | 25.0% |
| !! | ATTTCTTTTCTAACAGTGAA+AGG | + | chr3.3:82622813-82622832 | None:intergenic | 25.0% |
| !! | CATTTGTTTAATTGATTCCA+TGG | + | chr3.3:82620105-82620124 | None:intergenic | 25.0% |
| !! | GTTTTTCTGTTTGGTTATTA+GGG | + | chr3.3:82620750-82620769 | None:intergenic | 25.0% |
| !! | TGTTTTTCTGTTTGGTTATT+AGG | + | chr3.3:82620751-82620770 | None:intergenic | 25.0% |
| !! | TTTCTTTTCTAACAGTGAAA+GGG | + | chr3.3:82622812-82622831 | None:intergenic | 25.0% |
| !!! | AATATTGATTTTAGGACTGA+AGG | - | chr3.3:82621960-82621979 | MS.gene020439:CDS | 25.0% |
| !!! | ACCATTTGAGTTGTATTTTA+CGG | - | chr3.3:82620206-82620225 | MS.gene020439:CDS | 25.0% |
| AAACCTGAACATTGAATTGT+TGG | + | chr3.3:82620892-82620911 | None:intergenic | 30.0% | |
| AAACTGAGAAAGAGTTTGTA+AGG | - | chr3.3:82620971-82620990 | MS.gene020439:intron | 30.0% | |
| AAGAACTATAACGATGTAAC+GGG | - | chr3.3:82622164-82622183 | MS.gene020439:CDS | 30.0% | |
| AAGAGAAAAGATTATGTTGG+AGG | - | chr3.3:82622124-82622143 | MS.gene020439:CDS | 30.0% | |
| AATCCAACAATTCAATGTTC+AGG | - | chr3.3:82620886-82620905 | MS.gene020439:CDS | 30.0% | |
| AGATGATAAGTCTAGATTGA+AGG | - | chr3.3:82621935-82621954 | MS.gene020439:CDS | 30.0% | |
| ATGTAGCAAAAAACATACCT+TGG | + | chr3.3:82620016-82620035 | None:intergenic | 30.0% | |
| CATGAAACAAGAAATCAACA+AGG | - | chr3.3:82623233-82623252 | MS.gene020439:intron | 30.0% | |
| CTTGTTAAAGTCAACTAAGT+AGG | - | chr3.3:82622430-82622449 | MS.gene020439:CDS | 30.0% | |
| GAAAAATGTGAAACTAGATG+AGG | - | chr3.3:82621752-82621771 | MS.gene020439:CDS | 30.0% | |
| GAAATTGAAGACAAAGTTAC+AGG | - | chr3.3:82621027-82621046 | MS.gene020439:intron | 30.0% | |
| GAAGAACTATAACGATGTAA+CGG | - | chr3.3:82622163-82622182 | MS.gene020439:CDS | 30.0% | |
| GATATGCTTGAACATGATAT+AGG | - | chr3.3:82621354-82621373 | MS.gene020439:CDS | 30.0% | |
| GTACCTCTTTCAACTTATTT+AGG | + | chr3.3:82621167-82621186 | None:intergenic | 30.0% | |
| TAAAGTTGAATCACTTGATC+TGG | - | chr3.3:82622040-82622059 | MS.gene020439:CDS | 30.0% | |
| TAATGCTCTATATGCTCTAA+AGG | + | chr3.3:82620584-82620603 | None:intergenic | 30.0% | |
| TCAGGACAAAACAATCAAAA+TGG | - | chr3.3:82619976-82619995 | MS.gene020439:CDS | 30.0% | |
| TCCACAAAATTTATCAGTTC+TGG | + | chr3.3:82620556-82620575 | None:intergenic | 30.0% | |
| TCTATGTTGCTATCAAGAAA+AGG | - | chr3.3:82620823-82620842 | MS.gene020439:CDS | 30.0% | |
| TCTCATCATATCAAATGTTC+CGG | - | chr3.3:82620178-82620197 | MS.gene020439:CDS | 30.0% | |
| TGCTACATAACATTTCATCA+TGG | - | chr3.3:82620028-82620047 | MS.gene020439:CDS | 30.0% | |
| TTAAGTCCTGTAAAGATTGT+TGG | + | chr3.3:82622921-82622940 | None:intergenic | 30.0% | |
| ! | AACCCTAAATAAGTTGAAAG+AGG | - | chr3.3:82621161-82621180 | MS.gene020439:intron | 30.0% |
| ! | ACCAGAACTGATAAATTTTG+TGG | - | chr3.3:82620552-82620571 | MS.gene020439:CDS | 30.0% |
| ! | AGAATTTAGAATTCTGGTTG+AGG | - | chr3.3:82622863-82622882 | MS.gene020439:CDS | 30.0% |
| ! | CAAGCTTCAGAAAGAAATTT+TGG | - | chr3.3:82620942-82620961 | MS.gene020439:intron | 30.0% |
| ! | CATTTTTGAATTGGCACTTA+AGG | - | chr3.3:82622223-82622242 | MS.gene020439:CDS | 30.0% |
| ! | GAAGGTTTGAGTTATGTAAA+AGG | - | chr3.3:82623273-82623292 | MS.gene020439:intron | 30.0% |
| ! | TAAGGTTGTTAGTTTGGAAA+CGG | - | chr3.3:82621473-82621492 | MS.gene020439:CDS | 30.0% |
| ! | TCGAAACAGCATTTTTGAAT+TGG | - | chr3.3:82622214-82622233 | MS.gene020439:CDS | 30.0% |
| ! | TTGAGGAGAATTTAGAATTC+TGG | - | chr3.3:82622857-82622876 | MS.gene020439:CDS | 30.0% |
| ! | TTTCTTGATAGCAACATAGA+CGG | + | chr3.3:82620823-82620842 | None:intergenic | 30.0% |
| !! | GAATCAAGTTGAAGAAACAA+AGG | - | chr3.3:82623412-82623431 | MS.gene020439:intron | 30.0% |
| !! | TGTTGCATTGTTTTTCTGTT+TGG | + | chr3.3:82620759-82620778 | None:intergenic | 30.0% |
| !! | TGTTTTTCAAAATCCTCACT+TGG | + | chr3.3:82621828-82621847 | None:intergenic | 30.0% |
| !!! | ACTTTTTTTGACGATGAATC+TGG | + | chr3.3:82623165-82623184 | None:intergenic | 30.0% |
| !!! | CCATTTGAGTTGTATTTTAC+GGG | - | chr3.3:82620207-82620226 | MS.gene020439:CDS | 30.0% |
| !!! | TGGAAAGACAAGATTTTTTG+TGG | - | chr3.3:82622756-82622775 | MS.gene020439:CDS | 30.0% |
| AAATTCCGCTTCGAAATTGA+TGG | - | chr3.3:82622829-82622848 | MS.gene020439:CDS | 35.0% | |
| AAGGATGAAAGAATTGGAAG+AGG | - | chr3.3:82621620-82621639 | MS.gene020439:CDS | 35.0% | |
| AATGTGAAACTAGATGAGGA+AGG | - | chr3.3:82621756-82621775 | MS.gene020439:CDS | 35.0% | |
| ACAAAGCTTAGAAGAGGATA+AGG | - | chr3.3:82621563-82621582 | MS.gene020439:CDS | 35.0% | |
| ACAACTCAAATGGTAAAAGC+CGG | + | chr3.3:82620200-82620219 | None:intergenic | 35.0% | |
| AGTTACTTCTCAGAATGGAT+TGG | - | chr3.3:82621497-82621516 | MS.gene020439:CDS | 35.0% | |
| ATCACTTGATCTGGAAACTA+AGG | - | chr3.3:82622049-82622068 | MS.gene020439:CDS | 35.0% | |
| ATGTGAAACTAGATGAGGAA+GGG | - | chr3.3:82621757-82621776 | MS.gene020439:CDS | 35.0% | |
| ATTATGCATATCTGCAGGTA+AGG | - | chr3.3:82622485-82622504 | MS.gene020439:CDS | 35.0% | |
| CATCTTCGTCTATTCTGTAA+TGG | + | chr3.3:82620684-82620703 | None:intergenic | 35.0% | |
| CCCGTAAAATACAACTCAAA+TGG | + | chr3.3:82620210-82620229 | None:intergenic | 35.0% | |
| CTCTCAACAAAAATGTCGAA+AGG | - | chr3.3:82621661-82621680 | MS.gene020439:CDS | 35.0% | |
| GAAGAATTGAGTCAAGCAAT+GGG | - | chr3.3:82623324-82623343 | MS.gene020439:intron | 35.0% | |
| GAAGATCGTGCTGAAAATAT+CGG | - | chr3.3:82621897-82621916 | MS.gene020439:CDS | 35.0% | |
| GAAGTTCCAACAATCTTTAC+AGG | - | chr3.3:82622912-82622931 | MS.gene020439:CDS | 35.0% | |
| GACAAAACAATCAAAATGGC+TGG | - | chr3.3:82619980-82619999 | MS.gene020439:CDS | 35.0% | |
| GACTTCGAAAAACCTTCTTT+GGG | + | chr3.3:82620801-82620820 | None:intergenic | 35.0% | |
| GTACTAGCTATATCTGAAGA+TGG | + | chr3.3:82622676-82622695 | None:intergenic | 35.0% | |
| GTTTATCTCTTCATCCTTAG+TGG | + | chr3.3:82622530-82622549 | None:intergenic | 35.0% | |
| TAATTGAAGATAACGACGCA+CGG | - | chr3.3:82621100-82621119 | MS.gene020439:intron | 35.0% | |
| TACCAGTTCAGAAACAAATC+CGG | - | chr3.3:82622567-82622586 | MS.gene020439:CDS | 35.0% | |
| TATGCATTATGCATATCTGC+AGG | - | chr3.3:82622480-82622499 | MS.gene020439:CDS | 35.0% | |
| TCTGTTTGGTTATTAGGGTT+AGG | + | chr3.3:82620745-82620764 | None:intergenic | 35.0% | |
| TCTTGTAAGCTACACATTGA+TGG | + | chr3.3:82623120-82623139 | None:intergenic | 35.0% | |
| TGAAGAATTGAGTCAAGCAA+TGG | - | chr3.3:82623323-82623342 | MS.gene020439:intron | 35.0% | |
| TGTAGGTAAGGTTGTTAGTT+TGG | - | chr3.3:82621467-82621486 | MS.gene020439:CDS | 35.0% | |
| TTATGCATATCTGCAGGTAA+GGG | - | chr3.3:82622486-82622505 | MS.gene020439:CDS | 35.0% | |
| TTATTAGGGTTAGGAGGTAA+TGG | + | chr3.3:82620736-82620755 | None:intergenic | 35.0% | |
| TTCTAATGGAAAACCAAGTG+AGG | - | chr3.3:82621812-82621831 | MS.gene020439:CDS | 35.0% | |
| TTTACATGAATTTAACGCCG+TGG | + | chr3.3:82621139-82621158 | None:intergenic | 35.0% | |
| TTTCTAACAGTGAAAGGGAA+TGG | + | chr3.3:82622807-82622826 | None:intergenic | 35.0% | |
| TTTGATATGATGAGAGACAC+AGG | + | chr3.3:82620173-82620192 | None:intergenic | 35.0% | |
| ! | AATGAACCTCCTTAACCTTT+TGG | + | chr3.3:82621224-82621243 | None:intergenic | 35.0% |
| ! | AGAAGCATACCAAAAGGTTA+AGG | - | chr3.3:82621212-82621231 | MS.gene020439:CDS | 35.0% |
| ! | ATGGACTTGTTCAGGAAAAA+CGG | + | chr3.3:82620665-82620684 | None:intergenic | 35.0% |
| ! | TCAATGTTCAGGTTTGAGTA+AGG | - | chr3.3:82620897-82620916 | MS.gene020439:CDS | 35.0% |
| ! | TTCCTGTGTTTTCAACATGT+TGG | + | chr3.3:82622717-82622736 | None:intergenic | 35.0% |
| !! | AAAACCTTCTTTGGGATACT+TGG | + | chr3.3:82620793-82620812 | None:intergenic | 35.0% |
| !! | AGAACACAATGAAGTATTGC+AGG | - | chr3.3:82623074-82623093 | MS.gene020439:intron | 35.0% |
| !! | ATTCTGTAATGGACTTGTTC+AGG | + | chr3.3:82620673-82620692 | None:intergenic | 35.0% |
| !! | CCTTTGAGGTCTTTCTTATT+CGG | - | chr3.3:82623390-82623409 | MS.gene020439:intron | 35.0% |
| !! | CTTCATGAAAGTGTGTTTTG+AGG | + | chr3.3:82621698-82621717 | None:intergenic | 35.0% |
| !! | GAGGTAATGGATTAGTTTCA+GGG | + | chr3.3:82620723-82620742 | None:intergenic | 35.0% |
| !! | GTTTCTAGTGAACTACAAGA+AGG | - | chr3.3:82623255-82623274 | MS.gene020439:intron | 35.0% |
| !! | TTGATTGTTTTGTCCTGATG+TGG | + | chr3.3:82619974-82619993 | None:intergenic | 35.0% |
| AAAGAGCGGAAATGTACTAC+AGG | - | chr3.3:82620524-82620543 | MS.gene020439:CDS | 40.0% | |
| AACAGATATGGAGGAGATAG+TGG | - | chr3.3:82620456-82620475 | MS.gene020439:CDS | 40.0% | |
| AATTGAAGATAACGACGCAC+GGG | - | chr3.3:82621101-82621120 | MS.gene020439:intron | 40.0% | |
| ACTTGATCTGGAAACTAAGG+AGG | - | chr3.3:82622052-82622071 | MS.gene020439:CDS | 40.0% | |
| AGCAATCGTGAATGATGCTA+AGG | - | chr3.3:82621875-82621894 | MS.gene020439:CDS | 40.0% | |
| AGCATACCAAAAGGTTAAGG+AGG | - | chr3.3:82621215-82621234 | MS.gene020439:CDS | 40.0% | |
| ATATAGGCATGTTGCAAGAG+AGG | - | chr3.3:82621370-82621389 | MS.gene020439:CDS | 40.0% | |
| CAACCAATGCATATTCATGG+TGG | - | chr3.3:82619940-82619959 | MS.gene020439:CDS | 40.0% | |
| CAATGCATATTCATGGTGGT+GGG | - | chr3.3:82619944-82619963 | MS.gene020439:CDS | 40.0% | |
| CACCAACATGTTGAAAACAC+AGG | - | chr3.3:82622712-82622731 | MS.gene020439:CDS | 40.0% | |
| CAGCAACCAATGCATATTCA+TGG | - | chr3.3:82619937-82619956 | MS.gene020439:CDS | 40.0% | |
| CATCAAGCTGCAAAGTTTCA+AGG | - | chr3.3:82623198-82623217 | MS.gene020439:intron | 40.0% | |
| CATGTTGCAAGAGAGGATTA+AGG | - | chr3.3:82621377-82621396 | MS.gene020439:CDS | 40.0% | |
| CCGAATAAGAAAGACCTCAA+AGG | + | chr3.3:82623393-82623412 | None:intergenic | 40.0% | |
| CTTTCCAAGCAAACGAATCA+GGG | - | chr3.3:82621273-82621292 | MS.gene020439:CDS | 40.0% | |
| GAAAAGCTTGAGGAAGATTC+GGG | - | chr3.3:82621399-82621418 | MS.gene020439:CDS | 40.0% | |
| GAAGAATGTAGTTGCCACTA+AGG | - | chr3.3:82622513-82622532 | MS.gene020439:CDS | 40.0% | |
| GAGGATTAAGGAAAAGCTTG+AGG | - | chr3.3:82621389-82621408 | MS.gene020439:CDS | 40.0% | |
| GCAAACCATCAATTTCGAAG+CGG | + | chr3.3:82622837-82622856 | None:intergenic | 40.0% | |
| GGAAAAGCTTGAGGAAGATT+CGG | - | chr3.3:82621398-82621417 | MS.gene020439:CDS | 40.0% | |
| GGACTTCGAAAAACCTTCTT+TGG | + | chr3.3:82620802-82620821 | None:intergenic | 40.0% | |
| GTTTGGTTATTAGGGTTAGG+AGG | + | chr3.3:82620742-82620761 | None:intergenic | 40.0% | |
| TGACTCATTTGCTCAAAGAG+CGG | - | chr3.3:82620510-82620529 | MS.gene020439:CDS | 40.0% | |
| TGGAAAGGAAGTTACCTCTA+AGG | + | chr3.3:82621260-82621279 | None:intergenic | 40.0% | |
| TGTGAAACTAGATGAGGAAG+GGG | - | chr3.3:82621758-82621777 | MS.gene020439:CDS | 40.0% | |
| TGTGCAAGATCTAACACAAC+AGG | - | chr3.3:82621983-82622002 | MS.gene020439:CDS | 40.0% | |
| TTGGGATACTTGGAGGTTTA+GGG | + | chr3.3:82620783-82620802 | None:intergenic | 40.0% | |
| ! | AGCTAGAGAAGCATACCAAA+AGG | - | chr3.3:82621206-82621225 | MS.gene020439:CDS | 40.0% |
| ! | TTTGGGATACTTGGAGGTTT+AGG | + | chr3.3:82620784-82620803 | None:intergenic | 40.0% |
| !! | ACATAGAAGAAGTGTCAGCT+CGG | - | chr3.3:82620849-82620868 | MS.gene020439:CDS | 40.0% |
| !! | ATCCGGATTTGTTTCTGAAC+TGG | + | chr3.3:82622572-82622591 | None:intergenic | 40.0% |
| !! | CGAAATTGATGGTTTGCTTG+AGG | - | chr3.3:82622840-82622859 | MS.gene020439:CDS | 40.0% |
| !! | GGAGGTAATGGATTAGTTTC+AGG | + | chr3.3:82620724-82620743 | None:intergenic | 40.0% |
| ACCTCCAAGTATCCCAAAGA+AGG | - | chr3.3:82620786-82620805 | MS.gene020439:CDS | 45.0% | |
| ACGCTGTTCAAGGAGATAAC+AGG | - | chr3.3:82622635-82622654 | MS.gene020439:CDS | 45.0% | |
| ACGGCAGTTACTTCTCAGAA+TGG | - | chr3.3:82621492-82621511 | MS.gene020439:CDS | 45.0% | |
| AGATGAGGAAGGGGAGAATT+TGG | - | chr3.3:82621767-82621786 | MS.gene020439:CDS | 45.0% | |
| CCAATGCATATTCATGGTGG+TGG | - | chr3.3:82619943-82619962 | MS.gene020439:CDS | 45.0% | |
| CCACCACCATGAATATGCAT+TGG | + | chr3.3:82619946-82619965 | None:intergenic | 45.0% | |
| CCTCTTGAAAACGCTGTTCA+AGG | - | chr3.3:82622625-82622644 | MS.gene020439:CDS | 45.0% | |
| CCTTTCCAAGCAAACGAATC+AGG | - | chr3.3:82621272-82621291 | MS.gene020439:CDS | 45.0% | |
| CGCTGTTCAAGGAGATAACA+GGG | - | chr3.3:82622636-82622655 | MS.gene020439:CDS | 45.0% | |
| CTGTATTGTCTCTGTAGTGC+TGG | + | chr3.3:82623462-82623481 | None:intergenic | 45.0% | |
| GAAAAACGGTGGCAATTGTG+CGG | + | chr3.3:82620651-82620670 | None:intergenic | 45.0% | |
| GAGATGATCGATGAGCTTGT+AGG | - | chr3.3:82621450-82621469 | MS.gene020439:CDS | 45.0% | |
| GATCGATGAGCTTGTAGGTA+AGG | - | chr3.3:82621455-82621474 | MS.gene020439:CDS | 45.0% | |
| GGTACAATCACGATCATCTG+AGG | - | chr3.3:82621182-82621201 | MS.gene020439:intron | 45.0% | |
| GTTCAAGGAGATAACAGGGA+GGG | - | chr3.3:82622640-82622659 | MS.gene020439:CDS | 45.0% | |
| TGTTCAAGGAGATAACAGGG+AGG | - | chr3.3:82622639-82622658 | MS.gene020439:CDS | 45.0% | |
| ! | ATCTCCCTGATTCGTTTGCT+TGG | + | chr3.3:82621280-82621299 | None:intergenic | 45.0% |
| ! | CCTGATTCGTTTGCTTGGAA+AGG | + | chr3.3:82621275-82621294 | None:intergenic | 45.0% |
| ! | GACTTGTTCAGGAAAAACGG+TGG | + | chr3.3:82620662-82620681 | None:intergenic | 45.0% |
| !! | ACCTTCTTTGGGATACTTGG+AGG | + | chr3.3:82620790-82620809 | None:intergenic | 45.0% |
| !! | CCTTGAACAGCGTTTTCAAG+AGG | + | chr3.3:82622628-82622647 | None:intergenic | 45.0% |
| AACGGGCAAGCTCAACAATG+TGG | - | chr3.3:82622181-82622200 | MS.gene020439:CDS | 50.0% | |
| TGGCTGGAACAAAGTCTCCA+AGG | - | chr3.3:82619996-82620015 | MS.gene020439:CDS | 50.0% | |
| ! | TAACGACGCACGGGCTTTAA+TGG | - | chr3.3:82621110-82621129 | MS.gene020439:intron | 50.0% |
| ! | TATGGAGGAGATAGTGGCTG+AGG | - | chr3.3:82620462-82620481 | MS.gene020439:CDS | 50.0% |
| !! | ACCTCAAAGGCATTCTAGCG+CGG | + | chr3.3:82623380-82623399 | None:intergenic | 50.0% |
| AGGCGCTTCTTCGACTAGAG+TGG | + | chr3.3:82622608-82622627 | None:intergenic | 55.0% | |
| GTGGTGCGAGGACTTTCATC+CGG | + | chr3.3:82622589-82622608 | None:intergenic | 55.0% | |
| TCTTCGACTAGAGTGGTGCG+AGG | + | chr3.3:82622601-82622620 | None:intergenic | 55.0% | |
| ! | ACGGGCTTTAATGGCAGCCA+CGG | - | chr3.3:82621119-82621138 | MS.gene020439:intron | 55.0% |
| AGGCATTCTAGCGCGGCTTG+TGG | + | chr3.3:82623373-82623392 | None:intergenic | 60.0% | |
| GCCGCGCTAGAATGCCTTTG+AGG | - | chr3.3:82623376-82623395 | MS.gene020439:intron | 60.0% | |
| !! | GGTGGTGGGTTAGCCACATC+AGG | - | chr3.3:82619958-82619977 | MS.gene020439:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 82619924 | 82623515 | 82619924 | ID=MS.gene020439 |
| chr3.3 | mRNA | 82619924 | 82623515 | 82619924 | ID=MS.gene020439.t1;Parent=MS.gene020439 |
| chr3.3 | exon | 82623422 | 82623515 | 82623422 | ID=MS.gene020439.t1.exon1;Parent=MS.gene020439.t1 |
| chr3.3 | CDS | 82623422 | 82623515 | 82623422 | ID=cds.MS.gene020439.t1;Parent=MS.gene020439.t1 |
| chr3.3 | exon | 82621195 | 82622978 | 82621195 | ID=MS.gene020439.t1.exon2;Parent=MS.gene020439.t1 |
| chr3.3 | CDS | 82621195 | 82622978 | 82621195 | ID=cds.MS.gene020439.t1;Parent=MS.gene020439.t1 |
| chr3.3 | exon | 82619924 | 82620937 | 82619924 | ID=MS.gene020439.t1.exon3;Parent=MS.gene020439.t1 |
| chr3.3 | CDS | 82619924 | 82620937 | 82619924 | ID=cds.MS.gene020439.t1;Parent=MS.gene020439.t1 |
| Gene Sequence |
| Protein sequence |
