Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020466.t1 | XP_003602855.1 | 87.5 | 104 | 13 | 0 | 1 | 104 | 17 | 120 | 8.20E-47 | 196.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020466.t1 | Q41001 | 71.7 | 106 | 29 | 1 | 1 | 106 | 18 | 122 | 3.5e-38 | 159.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020466.t1 | G7J4J7 | 86.7 | 105 | 14 | 0 | 1 | 105 | 17 | 121 | 5.9e-47 | 196.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020466 | MS.gene47150 | PPI |
| MS.gene020466 | MS.gene55509 | PPI |
| MS.gene020466 | MS.gene074086 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020466.t1 | MTR_3g099680 | 86.916 | 107 | 14 | 0 | 1 | 107 | 17 | 123 | 3.37e-66 | 202 |
| MS.gene020466.t1 | MTR_3g099980 | 85.981 | 107 | 15 | 0 | 1 | 107 | 17 | 123 | 5.28e-65 | 199 |
| MS.gene020466.t1 | MTR_3g099570 | 65.169 | 178 | 48 | 7 | 1 | 174 | 17 | 184 | 3.49e-61 | 187 |
| MS.gene020466.t1 | MTR_3g099580 | 65.169 | 178 | 50 | 5 | 1 | 174 | 17 | 186 | 2.61e-57 | 178 |
| MS.gene020466.t1 | MTR_3g099540 | 60.345 | 116 | 44 | 2 | 1 | 116 | 18 | 131 | 6.24e-39 | 129 |
| MS.gene020466.t1 | MTR_8g007020 | 44.886 | 176 | 83 | 5 | 1 | 169 | 14 | 182 | 3.39e-33 | 116 |
| MS.gene020466.t1 | MTR_8g007035 | 56.566 | 99 | 41 | 2 | 12 | 109 | 26 | 123 | 1.83e-30 | 110 |
| MS.gene020466.t1 | MTR_4g114870 | 46.610 | 118 | 58 | 2 | 8 | 121 | 27 | 143 | 1.34e-27 | 106 |
| MS.gene020466.t1 | MTR_4g114870 | 47.525 | 101 | 48 | 2 | 10 | 106 | 191 | 290 | 2.53e-25 | 100 |
| MS.gene020466.t1 | MTR_5g006040 | 36.310 | 168 | 96 | 6 | 5 | 170 | 21 | 179 | 3.29e-27 | 101 |
| MS.gene020466.t1 | MTR_1g090190 | 34.356 | 163 | 102 | 4 | 8 | 169 | 21 | 179 | 3.82e-27 | 100 |
| MS.gene020466.t1 | MTR_7g086140 | 42.718 | 103 | 59 | 0 | 7 | 109 | 23 | 125 | 2.26e-23 | 90.9 |
| MS.gene020466.t1 | MTR_7g086190 | 42.718 | 103 | 59 | 0 | 7 | 109 | 23 | 125 | 2.26e-23 | 90.9 |
| MS.gene020466.t1 | MTR_7g086160 | 41.748 | 103 | 60 | 0 | 7 | 109 | 24 | 126 | 2.53e-22 | 88.2 |
| MS.gene020466.t1 | MTR_1g105130 | 42.268 | 97 | 56 | 0 | 10 | 106 | 25 | 121 | 4.36e-22 | 87.4 |
| MS.gene020466.t1 | MTR_1g105120 | 42.268 | 97 | 56 | 0 | 10 | 106 | 25 | 121 | 4.36e-22 | 87.4 |
| MS.gene020466.t1 | MTR_8g099220 | 42.718 | 103 | 55 | 2 | 8 | 107 | 27 | 128 | 8.27e-22 | 85.9 |
| MS.gene020466.t1 | MTR_6g080660 | 46.154 | 104 | 54 | 2 | 7 | 110 | 25 | 126 | 1.05e-21 | 87.8 |
| MS.gene020466.t1 | MTR_1g104800 | 40.000 | 100 | 57 | 2 | 9 | 106 | 24 | 122 | 2.11e-21 | 86.3 |
| MS.gene020466.t1 | MTR_2g088990 | 39.259 | 135 | 72 | 5 | 7 | 139 | 22 | 148 | 3.56e-21 | 86.7 |
| MS.gene020466.t1 | MTR_7g086220 | 40.000 | 100 | 60 | 0 | 10 | 109 | 25 | 124 | 6.36e-21 | 84.3 |
| MS.gene020466.t1 | MTR_1g112700 | 38.318 | 107 | 64 | 2 | 8 | 113 | 31 | 136 | 6.49e-21 | 85.1 |
| MS.gene020466.t1 | MTR_6g083240 | 37.226 | 137 | 77 | 4 | 12 | 142 | 29 | 162 | 1.13e-20 | 84.3 |
| MS.gene020466.t1 | MTR_0334s0010 | 41.121 | 107 | 58 | 3 | 5 | 108 | 23 | 127 | 3.53e-19 | 80.9 |
| MS.gene020466.t1 | MTR_4g067200 | 38.793 | 116 | 64 | 4 | 1 | 110 | 19 | 133 | 3.08e-18 | 77.8 |
| MS.gene020466.t1 | MTR_4g066110 | 38.793 | 116 | 64 | 4 | 1 | 110 | 19 | 133 | 3.08e-18 | 77.8 |
| MS.gene020466.t1 | MTR_2g025580 | 36.296 | 135 | 80 | 4 | 1 | 130 | 18 | 151 | 2.20e-17 | 75.5 |
| MS.gene020466.t1 | MTR_6g023760 | 40.404 | 99 | 58 | 1 | 8 | 106 | 24 | 121 | 2.87e-17 | 75.5 |
| MS.gene020466.t1 | MTR_3g089035 | 43.158 | 95 | 50 | 3 | 10 | 104 | 33 | 123 | 4.24e-17 | 73.6 |
| MS.gene020466.t1 | MTR_2g083250 | 43.269 | 104 | 52 | 3 | 11 | 108 | 27 | 129 | 8.23e-17 | 75.9 |
| MS.gene020466.t1 | MTR_4g114830 | 39.560 | 91 | 49 | 2 | 11 | 95 | 30 | 120 | 1.27e-16 | 73.2 |
| MS.gene020466.t1 | MTR_7g086090 | 40.206 | 97 | 57 | 1 | 11 | 107 | 27 | 122 | 3.94e-16 | 73.6 |
| MS.gene020466.t1 | MTR_1g090420 | 28.750 | 160 | 90 | 5 | 7 | 147 | 25 | 179 | 6.01e-16 | 72.8 |
| MS.gene020466.t1 | MTR_2g043730 | 40.625 | 96 | 53 | 3 | 10 | 105 | 32 | 123 | 8.34e-16 | 70.1 |
| MS.gene020466.t1 | MTR_7g086280 | 38.776 | 98 | 59 | 1 | 10 | 107 | 26 | 122 | 1.15e-15 | 71.2 |
| MS.gene020466.t1 | MTR_7g086230 | 38.776 | 98 | 59 | 1 | 10 | 107 | 26 | 122 | 1.21e-15 | 71.2 |
| MS.gene020466.t1 | MTR_6g013420 | 36.000 | 125 | 69 | 4 | 8 | 123 | 36 | 158 | 1.25e-15 | 71.2 |
| MS.gene020466.t1 | MTR_8g463180 | 33.051 | 118 | 73 | 3 | 5 | 117 | 19 | 135 | 1.34e-15 | 73.2 |
| MS.gene020466.t1 | MTR_4g081100 | 38.889 | 90 | 51 | 1 | 11 | 96 | 33 | 122 | 1.43e-15 | 71.6 |
| MS.gene020466.t1 | MTR_2g101300 | 36.000 | 125 | 70 | 4 | 12 | 131 | 29 | 148 | 2.07e-15 | 70.9 |
| MS.gene020466.t1 | MTR_7g086100 | 39.583 | 96 | 57 | 1 | 11 | 106 | 27 | 121 | 8.80e-15 | 69.7 |
| MS.gene020466.t1 | MTR_4g007250 | 36.538 | 104 | 64 | 2 | 4 | 107 | 23 | 124 | 8.93e-15 | 68.6 |
| MS.gene020466.t1 | MTR_6g013200 | 35.294 | 119 | 71 | 4 | 11 | 127 | 36 | 150 | 1.02e-14 | 68.6 |
| MS.gene020466.t1 | MTR_8g088830 | 40.909 | 88 | 48 | 3 | 12 | 98 | 30 | 114 | 1.23e-14 | 67.0 |
| MS.gene020466.t1 | MTR_2g043790 | 40.625 | 96 | 53 | 3 | 10 | 105 | 7 | 98 | 1.38e-14 | 66.2 |
| MS.gene020466.t1 | MTR_8g086360 | 29.268 | 164 | 111 | 4 | 12 | 173 | 26 | 186 | 2.00e-14 | 68.2 |
| MS.gene020466.t1 | MTR_8g089110 | 37.500 | 96 | 56 | 3 | 10 | 105 | 28 | 119 | 1.89e-13 | 63.9 |
| MS.gene020466.t1 | MTR_3g089005 | 36.538 | 104 | 62 | 3 | 1 | 104 | 24 | 123 | 1.98e-13 | 63.9 |
| MS.gene020466.t1 | MTR_4g130780 | 34.783 | 92 | 59 | 1 | 24 | 115 | 48 | 138 | 2.53e-13 | 65.1 |
| MS.gene020466.t1 | MTR_4g130800 | 35.514 | 107 | 63 | 3 | 5 | 106 | 24 | 129 | 4.50e-13 | 65.9 |
| MS.gene020466.t1 | MTR_7g086200 | 34.821 | 112 | 57 | 2 | 10 | 121 | 4 | 99 | 6.38e-13 | 62.8 |
| MS.gene020466.t1 | MTR_4g077787 | 30.882 | 136 | 79 | 4 | 12 | 135 | 34 | 166 | 6.72e-13 | 63.9 |
| MS.gene020466.t1 | MTR_8g094990 | 33.929 | 112 | 70 | 2 | 12 | 120 | 27 | 137 | 6.92e-13 | 65.1 |
| MS.gene020466.t1 | MTR_4g130800 | 40.244 | 82 | 48 | 1 | 25 | 106 | 48 | 128 | 9.00e-13 | 64.7 |
| MS.gene020466.t1 | MTR_4g124280 | 32.967 | 91 | 57 | 1 | 12 | 98 | 27 | 117 | 5.05e-12 | 62.4 |
| MS.gene020466.t1 | MTR_6g022170 | 37.000 | 100 | 55 | 4 | 12 | 106 | 36 | 132 | 5.96e-12 | 60.8 |
| MS.gene020466.t1 | MTR_2g090575 | 35.955 | 89 | 55 | 1 | 12 | 98 | 27 | 115 | 8.89e-12 | 62.8 |
| MS.gene020466.t1 | MTR_2g090580 | 25.000 | 172 | 119 | 3 | 12 | 173 | 29 | 200 | 1.07e-11 | 60.8 |
| MS.gene020466.t1 | MTR_6g013170 | 30.872 | 149 | 93 | 5 | 9 | 156 | 30 | 169 | 1.14e-11 | 60.5 |
| MS.gene020466.t1 | MTR_4g111640 | 28.931 | 159 | 95 | 5 | 12 | 164 | 34 | 180 | 1.34e-11 | 60.5 |
| MS.gene020466.t1 | MTR_3g105930 | 28.667 | 150 | 86 | 6 | 25 | 169 | 47 | 180 | 3.57e-11 | 59.3 |
| MS.gene020466.t1 | MTR_4g078410 | 25.974 | 154 | 111 | 2 | 12 | 163 | 27 | 179 | 4.22e-11 | 59.3 |
| MS.gene020466.t1 | MTR_1g014120 | 34.066 | 91 | 59 | 1 | 25 | 115 | 45 | 134 | 5.16e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020466.t1 | AT1G72230 | 54.386 | 114 | 44 | 3 | 18 | 131 | 31 | 136 | 2.68e-34 | 119 |
| MS.gene020466.t1 | AT1G22480 | 55.670 | 97 | 41 | 2 | 16 | 112 | 25 | 119 | 1.57e-27 | 102 |
| MS.gene020466.t1 | AT5G07475 | 33.533 | 167 | 100 | 4 | 8 | 171 | 28 | 186 | 5.31e-26 | 98.6 |
| MS.gene020466.t1 | AT2G32300 | 40.909 | 132 | 71 | 3 | 5 | 131 | 21 | 150 | 1.57e-25 | 99.0 |
| MS.gene020466.t1 | AT2G32300 | 40.909 | 132 | 71 | 3 | 5 | 131 | 51 | 180 | 3.44e-25 | 98.6 |
| MS.gene020466.t1 | AT2G31050 | 45.299 | 117 | 60 | 3 | 7 | 122 | 26 | 139 | 1.38e-24 | 95.1 |
| MS.gene020466.t1 | AT3G17675 | 40.566 | 106 | 62 | 1 | 1 | 106 | 23 | 127 | 1.52e-23 | 90.5 |
| MS.gene020466.t1 | AT2G26720 | 40.351 | 114 | 66 | 2 | 7 | 119 | 26 | 138 | 2.47e-23 | 92.0 |
| MS.gene020466.t1 | AT5G26330 | 41.284 | 109 | 61 | 2 | 5 | 110 | 19 | 127 | 5.91e-23 | 90.5 |
| MS.gene020466.t1 | AT3G60270 | 47.959 | 98 | 49 | 2 | 12 | 109 | 28 | 123 | 3.69e-21 | 85.9 |
| MS.gene020466.t1 | AT3G27200 | 41.837 | 98 | 54 | 3 | 10 | 106 | 26 | 121 | 6.37e-19 | 79.7 |
| MS.gene020466.t1 | AT5G20230 | 36.471 | 170 | 97 | 4 | 12 | 173 | 27 | 193 | 1.70e-18 | 79.0 |
| MS.gene020466.t1 | AT2G44790 | 36.905 | 168 | 91 | 4 | 18 | 173 | 36 | 200 | 9.69e-17 | 74.7 |
| MS.gene020466.t1 | AT3G60280 | 42.857 | 98 | 54 | 2 | 12 | 109 | 26 | 121 | 8.59e-16 | 72.4 |
| MS.gene020466.t1 | AT1G64640 | 35.772 | 123 | 74 | 3 | 8 | 127 | 31 | 151 | 1.34e-14 | 68.6 |
| MS.gene020466.t1 | AT4G28365 | 29.480 | 173 | 111 | 4 | 5 | 169 | 24 | 193 | 5.57e-14 | 67.0 |
| MS.gene020466.t1 | AT2G25060 | 38.542 | 96 | 55 | 2 | 24 | 116 | 50 | 144 | 1.44e-13 | 65.9 |
| MS.gene020466.t1 | AT5G53870 | 30.909 | 110 | 74 | 1 | 12 | 119 | 32 | 141 | 2.20e-13 | 67.4 |
| MS.gene020466.t1 | AT5G53870 | 30.909 | 110 | 74 | 1 | 12 | 119 | 32 | 141 | 2.79e-13 | 67.0 |
| MS.gene020466.t1 | AT5G15350 | 33.333 | 132 | 79 | 5 | 1 | 127 | 17 | 144 | 3.13e-13 | 64.7 |
| MS.gene020466.t1 | AT2G02850 | 38.384 | 99 | 57 | 3 | 6 | 104 | 32 | 126 | 3.89e-13 | 63.5 |
| MS.gene020466.t1 | AT3G01070 | 33.333 | 117 | 77 | 1 | 12 | 127 | 29 | 145 | 1.92e-12 | 62.4 |
| MS.gene020466.t1 | AT4G27520 | 34.021 | 97 | 61 | 2 | 12 | 106 | 33 | 128 | 2.80e-12 | 63.9 |
| MS.gene020466.t1 | AT3G20570 | 30.380 | 158 | 99 | 3 | 12 | 159 | 32 | 188 | 5.85e-12 | 61.6 |
| MS.gene020466.t1 | AT4G31840 | 30.693 | 101 | 70 | 0 | 24 | 124 | 46 | 146 | 6.11e-12 | 61.2 |
| MS.gene020466.t1 | AT4G30590 | 32.520 | 123 | 77 | 4 | 9 | 126 | 27 | 148 | 7.94e-11 | 58.5 |
Find 40 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACTCTCTGTTAAGGTTA+AGG | 0.366793 | 3.3:+82258470 | MS.gene020466:CDS |
| AGTAGCAATGGTGGTGGTGG+AGG | 0.384189 | 3.3:-82258583 | None:intergenic |
| CCTTCAGCAACGCCATCATC+AGG | 0.386865 | 3.3:+82258513 | MS.gene020466:CDS |
| CACGTTGTTGGAGATGCTTT+AGG | 0.407015 | 3.3:+82258106 | MS.gene020466:CDS |
| CACTATGGCATTGCCGACTC+AGG | 0.423120 | 3.3:+82258075 | None:intergenic |
| CAGGGAACTGTCCACGTTGT+TGG | 0.443481 | 3.3:+82258094 | MS.gene020466:CDS |
| AGGAGTAGCAATGGTGGTGG+TGG | 0.467297 | 3.3:-82258586 | None:intergenic |
| GGTGCAATAGTAATTGTGTT+GGG | 0.490620 | 3.3:-82258561 | None:intergenic |
| GGGAAAGGTTCACCTTCTAA+TGG | 0.496016 | 3.3:+82258534 | MS.gene020466:CDS |
| AGTGACAAAACCTTTGTAGT+TGG | 0.507345 | 3.3:+82258163 | MS.gene020466:CDS |
| TGCTGAAGGAGCAGCAGAAG+CGG | 0.511020 | 3.3:-82258499 | None:intergenic |
| TGGCATGAAACTCTCTGTTA+AGG | 0.526108 | 3.3:+82258464 | MS.gene020466:CDS |
| CCTGATGATGGCGTTGCTGA+AGG | 0.526802 | 3.3:-82258513 | None:intergenic |
| ACTAGTCTCTCATCAATCGT+TGG | 0.529399 | 3.3:+82258630 | MS.gene020466:CDS |
| GTTCCTGTACATTGCATAAG+TGG | 0.532733 | 3.3:+82258441 | MS.gene020466:CDS |
| ACAGTGTTCAATTATGAAGC+TGG | 0.533391 | 3.3:+82258285 | MS.gene020466:intron |
| GGTGAACCTTTCCCTGATGA+TGG | 0.542469 | 3.3:-82258525 | None:intergenic |
| TTTGTAGTTGGTGACAGTCT+CGG | 0.547696 | 3.3:+82258175 | MS.gene020466:CDS |
| CCACCACTTATGCAATGTAC+AGG | 0.547760 | 3.3:-82258444 | None:intergenic |
| GTAGCAATGGTGGTGGTGGA+GGG | 0.552207 | 3.3:-82258582 | None:intergenic |
| GTGCAATAGTAATTGTGTTG+GGG | 0.560714 | 3.3:-82258560 | None:intergenic |
| TGATTCTGATTATACAACAT+GGG | 0.577703 | 3.3:+82258138 | MS.gene020466:CDS |
| TTGTTGGAGATGCTTTAGGT+TGG | 0.594901 | 3.3:+82258110 | MS.gene020466:CDS |
| TTGATTCTGATTATACAACA+TGG | 0.604668 | 3.3:+82258137 | MS.gene020466:CDS |
| GGGTGCAATAGTAATTGTGT+TGG | 0.604930 | 3.3:-82258562 | None:intergenic |
| TTGCACGGTAGGAGTAGCAA+TGG | 0.607518 | 3.3:-82258595 | None:intergenic |
| ACTATGGCATTGCCGACTCA+GGG | 0.610566 | 3.3:+82258076 | None:intergenic |
| CACGGTAGGAGTAGCAATGG+TGG | 0.625032 | 3.3:-82258592 | None:intergenic |
| GCAACGCCATCATCAGGGAA+AGG | 0.630930 | 3.3:+82258519 | MS.gene020466:CDS |
| CAGTGTTCAATTATGAAGCT+GGG | 0.634180 | 3.3:+82258286 | MS.gene020466:intron |
| GGTAGGAGTAGCAATGGTGG+TGG | 0.635365 | 3.3:-82258589 | None:intergenic |
| TGCAATAGTAATTGTGTTGG+GGG | 0.637451 | 3.3:-82258559 | None:intergenic |
| ACGTGGACAGTTCCCTGAGT+CGG | 0.637462 | 3.3:-82258088 | None:intergenic |
| CTTCAGCAACGCCATCATCA+GGG | 0.640963 | 3.3:+82258514 | MS.gene020466:CDS |
| GAGACTGTCACCAACTACAA+AGG | 0.655751 | 3.3:-82258173 | None:intergenic |
| TCAATTAGTACAGATAGTAG+TGG | 0.655860 | 3.3:+82258366 | MS.gene020466:CDS |
| CCTGTACATTGCATAAGTGG+TGG | 0.698977 | 3.3:+82258444 | MS.gene020466:CDS |
| CTAAAGCATCTCCAACAACG+TGG | 0.721869 | 3.3:-82258105 | None:intergenic |
| TGAAGCTGGGTGGCACACAG+TGG | 0.737276 | 3.3:+82258299 | MS.gene020466:CDS |
| TGTTCAATTATGAAGCTGGG+TGG | 0.745243 | 3.3:+82258289 | MS.gene020466:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATTCTGATTATACAACAT+GGG | + | chr3.3:82258138-82258157 | MS.gene020466:CDS | 25.0% |
| ! | TTGATTCTGATTATACAACA+TGG | + | chr3.3:82258137-82258156 | MS.gene020466:CDS | 25.0% |
| TCAATTAGTACAGATAGTAG+TGG | + | chr3.3:82258366-82258385 | MS.gene020466:CDS | 30.0% | |
| ACAGTGTTCAATTATGAAGC+TGG | + | chr3.3:82258285-82258304 | MS.gene020466:intron | 35.0% | |
| AGTGACAAAACCTTTGTAGT+TGG | + | chr3.3:82258163-82258182 | MS.gene020466:CDS | 35.0% | |
| CAGTGTTCAATTATGAAGCT+GGG | + | chr3.3:82258286-82258305 | MS.gene020466:intron | 35.0% | |
| GAAACTCTCTGTTAAGGTTA+AGG | + | chr3.3:82258470-82258489 | MS.gene020466:CDS | 35.0% | |
| GGTGCAATAGTAATTGTGTT+GGG | - | chr3.3:82258564-82258583 | None:intergenic | 35.0% | |
| GTGCAATAGTAATTGTGTTG+GGG | - | chr3.3:82258563-82258582 | None:intergenic | 35.0% | |
| TGCAATAGTAATTGTGTTGG+GGG | - | chr3.3:82258562-82258581 | None:intergenic | 35.0% | |
| ! | AGTTGAAGATGCATTTTGCA+CGG | - | chr3.3:82258613-82258632 | None:intergenic | 35.0% |
| !!! | AATGAGTTCCTACTTTTTCG+AGG | - | chr3.3:82258407-82258426 | None:intergenic | 35.0% |
| !!! | ATGAGTTCCTACTTTTTCGA+GGG | - | chr3.3:82258406-82258425 | None:intergenic | 35.0% |
| GGGTGCAATAGTAATTGTGT+TGG | - | chr3.3:82258565-82258584 | None:intergenic | 40.0% | |
| GTTCCTGTACATTGCATAAG+TGG | + | chr3.3:82258441-82258460 | MS.gene020466:CDS | 40.0% | |
| TGGCATGAAACTCTCTGTTA+AGG | + | chr3.3:82258464-82258483 | MS.gene020466:CDS | 40.0% | |
| TGTTCAATTATGAAGCTGGG+TGG | + | chr3.3:82258289-82258308 | MS.gene020466:CDS | 40.0% | |
| ! | ACTAGTCTCTCATCAATCGT+TGG | + | chr3.3:82258630-82258649 | MS.gene020466:CDS | 40.0% |
| ! | TTGTTGGAGATGCTTTAGGT+TGG | + | chr3.3:82258110-82258129 | MS.gene020466:CDS | 40.0% |
| !! | TTTGTAGTTGGTGACAGTCT+CGG | + | chr3.3:82258175-82258194 | MS.gene020466:CDS | 40.0% |
| !!! | TGAGTTCCTACTTTTTCGAG+GGG | - | chr3.3:82258405-82258424 | None:intergenic | 40.0% |
| ACCATTCCCCTCGAAAAAGT+AGG | + | chr3.3:82258396-82258415 | MS.gene020466:CDS | 45.0% | |
| CACGTTGTTGGAGATGCTTT+AGG | + | chr3.3:82258106-82258125 | MS.gene020466:CDS | 45.0% | |
| CCACCACTTATGCAATGTAC+AGG | - | chr3.3:82258447-82258466 | None:intergenic | 45.0% | |
| CCTGTACATTGCATAAGTGG+TGG | + | chr3.3:82258444-82258463 | MS.gene020466:CDS | 45.0% | |
| GAGACTGTCACCAACTACAA+AGG | - | chr3.3:82258176-82258195 | None:intergenic | 45.0% | |
| GGGAAAGGTTCACCTTCTAA+TGG | + | chr3.3:82258534-82258553 | MS.gene020466:CDS | 45.0% | |
| ! | CTAAAGCATCTCCAACAACG+TGG | - | chr3.3:82258108-82258127 | None:intergenic | 45.0% |
| ! | GAAGATGCATTTTGCACGGT+AGG | - | chr3.3:82258609-82258628 | None:intergenic | 45.0% |
| !!! | TCCTACTTTTTCGAGGGGAA+TGG | - | chr3.3:82258400-82258419 | None:intergenic | 45.0% |
| !!! | TTTTTCGAGGGGAATGGTTG+TGG | - | chr3.3:82258394-82258413 | None:intergenic | 45.0% |
| CTTCAGCAACGCCATCATCA+GGG | + | chr3.3:82258514-82258533 | MS.gene020466:CDS | 50.0% | |
| GGTGAACCTTTCCCTGATGA+TGG | - | chr3.3:82258528-82258547 | None:intergenic | 50.0% | |
| TTGCACGGTAGGAGTAGCAA+TGG | - | chr3.3:82258598-82258617 | None:intergenic | 50.0% | |
| ACGTGGACAGTTCCCTGAGT+CGG | - | chr3.3:82258091-82258110 | None:intergenic | 55.0% | |
| CACGGTAGGAGTAGCAATGG+TGG | - | chr3.3:82258595-82258614 | None:intergenic | 55.0% | |
| CAGGGAACTGTCCACGTTGT+TGG | + | chr3.3:82258094-82258113 | MS.gene020466:CDS | 55.0% | |
| CCTTCAGCAACGCCATCATC+AGG | + | chr3.3:82258513-82258532 | MS.gene020466:CDS | 55.0% | |
| GCAACGCCATCATCAGGGAA+AGG | + | chr3.3:82258519-82258538 | MS.gene020466:CDS | 55.0% | |
| GGTAGGAGTAGCAATGGTGG+TGG | - | chr3.3:82258592-82258611 | None:intergenic | 55.0% | |
| TGCTGAAGGAGCAGCAGAAG+CGG | - | chr3.3:82258502-82258521 | None:intergenic | 55.0% | |
| !! | AGGAGTAGCAATGGTGGTGG+TGG | - | chr3.3:82258589-82258608 | None:intergenic | 55.0% |
| !! | AGTAGCAATGGTGGTGGTGG+AGG | - | chr3.3:82258586-82258605 | None:intergenic | 55.0% |
| !! | CCTGATGATGGCGTTGCTGA+AGG | - | chr3.3:82258516-82258535 | None:intergenic | 55.0% |
| !! | GTAGCAATGGTGGTGGTGGA+GGG | - | chr3.3:82258585-82258604 | None:intergenic | 55.0% |
| !! | GTGTTGGGGGTGCCATTAGA+AGG | - | chr3.3:82258549-82258568 | None:intergenic | 55.0% |
| TGAAGCTGGGTGGCACACAG+TGG | + | chr3.3:82258299-82258318 | MS.gene020466:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 82258079 | 82258695 | 82258079 | ID=MS.gene020466 |
| chr3.3 | mRNA | 82258079 | 82258695 | 82258079 | ID=MS.gene020466.t1;Parent=MS.gene020466 |
| chr3.3 | exon | 82258079 | 82258196 | 82258079 | ID=MS.gene020466.t1.exon1;Parent=MS.gene020466.t1 |
| chr3.3 | CDS | 82258079 | 82258196 | 82258079 | ID=cds.MS.gene020466.t1;Parent=MS.gene020466.t1 |
| chr3.3 | exon | 82258289 | 82258695 | 82258289 | ID=MS.gene020466.t1.exon2;Parent=MS.gene020466.t1 |
| chr3.3 | CDS | 82258289 | 82258695 | 82258289 | ID=cds.MS.gene020466.t1;Parent=MS.gene020466.t1 |
| Gene Sequence |
| Protein sequence |
