AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55509

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55509.t1 MTR_6g023760 86.592 179 23 1 1 178 1 179 1.28e-88 257
MS.gene55509.t1 MTR_2g088990 41.549 142 77 3 1 137 1 141 1.11e-31 114
MS.gene55509.t1 MTR_6g080660 39.474 114 68 1 7 120 10 122 1.65e-30 110
MS.gene55509.t1 MTR_5g006040 35.754 179 104 6 4 173 6 182 1.19e-27 102
MS.gene55509.t1 MTR_2g025580 31.176 170 107 4 7 171 7 171 1.46e-26 99.4
MS.gene55509.t1 MTR_8g007020 38.202 178 88 6 8 166 9 183 6.79e-26 98.2
MS.gene55509.t1 MTR_3g099570 36.420 162 85 3 6 150 7 167 3.15e-25 96.3
MS.gene55509.t1 MTR_8g007035 46.087 115 57 3 8 120 9 120 6.68e-25 95.9
MS.gene55509.t1 MTR_3g099580 40.870 115 67 1 6 120 7 120 1.76e-23 92.0
MS.gene55509.t1 MTR_3g099540 39.837 123 70 2 8 130 13 131 2.69e-22 87.4
MS.gene55509.t1 MTR_1g090190 29.936 157 107 2 22 178 20 173 7.75e-22 87.4
MS.gene55509.t1 MTR_1g105130 34.483 116 73 3 7 120 7 121 1.94e-20 83.2
MS.gene55509.t1 MTR_1g105120 34.483 116 73 3 7 120 7 121 1.94e-20 83.2
MS.gene55509.t1 MTR_1g104800 28.025 157 104 4 22 170 22 177 2.02e-20 84.0
MS.gene55509.t1 MTR_7g086140 32.773 119 77 3 4 120 5 122 2.86e-20 82.8
MS.gene55509.t1 MTR_7g086190 32.773 119 77 3 4 120 5 122 2.86e-20 82.8
MS.gene55509.t1 MTR_2g101300 35.915 142 82 5 6 142 10 147 6.87e-20 82.8
MS.gene55509.t1 MTR_7g086220 31.967 122 80 3 1 120 1 121 1.43e-19 81.3
MS.gene55509.t1 MTR_4g077787 32.857 140 84 3 23 154 30 167 1.91e-19 81.3
MS.gene55509.t1 MTR_4g114870 34.815 135 84 1 6 136 10 144 3.12e-19 84.0
MS.gene55509.t1 MTR_4g114870 37.624 101 57 3 25 120 191 290 7.61e-17 77.0
MS.gene55509.t1 MTR_4g007250 35.354 99 63 1 22 120 26 123 3.36e-19 80.5
MS.gene55509.t1 MTR_8g086360 32.857 140 88 3 8 143 5 142 4.37e-19 80.5
MS.gene55509.t1 MTR_4g067200 35.294 136 74 5 6 134 9 137 4.44e-19 80.1
MS.gene55509.t1 MTR_4g066110 35.294 136 74 5 6 134 9 137 4.44e-19 80.1
MS.gene55509.t1 MTR_3g099980 36.441 118 74 1 4 120 5 122 4.82e-19 81.3
MS.gene55509.t1 MTR_3g099680 35.833 120 76 1 4 122 5 124 9.19e-19 80.5
MS.gene55509.t1 MTR_7g086160 35.922 103 63 3 20 120 22 123 2.99e-18 77.8
MS.gene55509.t1 MTR_0334s0010 35.593 118 72 3 6 120 9 125 6.03e-18 77.8
MS.gene55509.t1 MTR_1g112700 31.724 145 90 5 9 145 17 160 4.50e-17 75.1
MS.gene55509.t1 MTR_8g088830 43.269 104 49 6 20 119 23 120 4.64e-17 73.6
MS.gene55509.t1 MTR_4g111640 31.724 145 91 3 23 161 30 172 6.18e-17 74.7
MS.gene55509.t1 MTR_8g463180 33.099 142 85 5 1 139 1 135 1.51e-16 75.9
MS.gene55509.t1 MTR_7g086100 29.060 117 83 0 4 120 5 121 1.82e-16 74.3
MS.gene55509.t1 MTR_2g043730 35.345 116 70 3 6 119 11 123 3.22e-16 71.2
MS.gene55509.t1 MTR_3g089035 40.816 98 53 4 22 118 30 123 3.59e-16 71.2
MS.gene55509.t1 MTR_3g089005 37.069 116 67 5 6 119 13 124 3.63e-16 71.2
MS.gene55509.t1 MTR_7g086090 31.405 121 82 1 1 120 1 121 3.79e-16 73.9
MS.gene55509.t1 MTR_6g013420 30.405 148 98 4 6 149 17 163 4.20e-16 72.4
MS.gene55509.t1 MTR_5g088000 28.671 143 93 4 6 145 1 137 4.48e-16 71.2
MS.gene55509.t1 MTR_3g105930 33.333 153 92 4 22 169 24 171 1.02e-15 71.6
MS.gene55509.t1 MTR_6g013170 34.028 144 91 4 25 166 31 172 1.70e-15 70.9
MS.gene55509.t1 MTR_8g094990 31.356 118 76 2 8 120 6 123 2.58e-15 72.0
MS.gene55509.t1 MTR_8g095013 30.508 118 77 2 8 120 6 123 3.73e-15 72.0
MS.gene55509.t1 MTR_2g090575 33.582 134 79 5 6 131 7 138 6.99e-15 71.6
MS.gene55509.t1 MTR_1g014120 32.867 143 84 6 6 143 11 146 7.10e-15 69.3
MS.gene55509.t1 MTR_2g090580 27.273 165 106 3 6 156 8 172 7.42e-15 69.7
MS.gene55509.t1 MTR_4g078410 28.481 158 100 3 22 166 22 179 7.42e-15 69.3
MS.gene55509.t1 MTR_7g086230 28.926 121 85 1 1 120 1 121 3.18e-14 67.4
MS.gene55509.t1 MTR_7g086280 28.926 121 85 1 1 120 1 121 3.76e-14 67.4
MS.gene55509.t1 MTR_4g112310 31.707 123 82 2 39 161 2 122 3.89e-14 66.2
MS.gene55509.t1 MTR_2g043790 37.374 99 59 2 21 119 3 98 6.09e-14 64.7
MS.gene55509.t1 MTR_6g022170 35.345 116 66 5 20 128 29 142 6.82e-14 66.2
MS.gene55509.t1 MTR_8g099220 37.864 103 59 4 22 120 26 127 2.64e-13 63.9
MS.gene55509.t1 MTR_4g081100 34.694 98 60 1 27 120 34 131 2.80e-13 65.9
MS.gene55509.t1 MTR_2g083250 35.000 100 59 3 27 120 28 127 2.96e-13 66.2
MS.gene55509.t1 MTR_2g079030 31.933 119 78 2 4 120 5 122 6.04e-13 66.2
MS.gene55509.t1 MTR_1g077790 33.036 112 68 4 16 121 20 130 1.53e-12 63.2
MS.gene55509.t1 MTR_5g088170 27.848 158 92 7 22 175 13 152 3.54e-12 61.6
MS.gene55509.t1 MTR_4g124280 29.839 124 82 3 1 120 2 124 8.28e-12 62.0
MS.gene55509.t1 MTR_7g086200 35.484 93 57 3 46 136 10 101 1.93e-11 58.9
MS.gene55509.t1 MTR_6g083240 27.219 169 113 5 6 167 8 173 4.05e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55509.t1 AT3G27200 62.609 115 43 0 6 120 7 121 1.17e-51 163
MS.gene55509.t1 AT2G32300 36.735 147 91 2 4 149 5 150 3.89e-32 116
MS.gene55509.t1 AT2G32300 37.241 145 89 2 6 149 37 180 9.55e-32 115
MS.gene55509.t1 AT5G07475 37.086 151 92 3 11 159 16 165 3.87e-30 109
MS.gene55509.t1 AT2G31050 41.600 125 70 3 9 131 13 136 7.31e-25 95.9
MS.gene55509.t1 AT2G26720 38.636 132 76 4 4 131 6 136 5.71e-24 93.6
MS.gene55509.t1 AT4G31840 36.000 175 99 8 7 175 10 177 9.08e-21 84.7
MS.gene55509.t1 AT5G53870 32.298 161 103 3 3 158 9 168 1.21e-20 87.8
MS.gene55509.t1 AT5G53870 32.298 161 103 3 3 158 9 168 1.63e-20 87.4
MS.gene55509.t1 AT1G72230 32.432 148 89 2 5 152 3 139 1.94e-19 81.3
MS.gene55509.t1 AT1G48940 33.333 186 105 6 1 177 1 176 3.74e-19 80.5
MS.gene55509.t1 AT2G27035 28.659 164 104 7 6 165 9 163 1.33e-18 78.6
MS.gene55509.t1 AT3G60270 40.594 101 59 1 20 120 21 120 2.14e-18 78.6
MS.gene55509.t1 AT1G45063 36.441 118 70 4 19 131 141 258 3.31e-18 79.7
MS.gene55509.t1 AT1G45063 31.304 115 77 2 8 120 12 126 2.02e-11 61.2
MS.gene55509.t1 AT1G22480 41.489 94 54 1 33 126 27 119 3.48e-18 77.8
MS.gene55509.t1 AT5G26330 33.613 119 73 4 7 120 4 121 3.59e-18 78.2
MS.gene55509.t1 AT3G18590 37.363 182 96 6 4 169 5 184 4.88e-18 77.8
MS.gene55509.t1 AT1G45063 36.441 118 70 4 19 131 141 258 5.46e-18 80.5
MS.gene55509.t1 AT1G45063 31.304 115 77 2 8 120 12 126 2.39e-11 61.6
MS.gene55509.t1 AT3G17675 35.593 118 71 4 6 120 12 127 9.74e-18 75.5
MS.gene55509.t1 AT3G60280 38.614 101 61 1 20 120 19 118 1.76e-17 77.0
MS.gene55509.t1 AT2G25060 40.496 121 58 6 6 120 19 131 6.75e-17 74.7
MS.gene55509.t1 AT5G20230 27.419 124 87 1 24 144 24 147 2.55e-16 73.6
MS.gene55509.t1 AT2G44790 40.000 95 54 2 33 125 36 129 2.76e-16 73.6
MS.gene55509.t1 AT4G12880 32.479 117 74 4 7 120 11 125 1.14e-15 70.5
MS.gene55509.t1 AT4G28365 38.129 139 76 6 27 158 31 166 5.89e-15 69.7
MS.gene55509.t1 AT4G27520 32.414 145 87 5 7 146 11 149 1.56e-14 70.5
MS.gene55509.t1 AT5G14345 34.074 135 75 6 7 133 1 129 2.37e-14 67.0
MS.gene55509.t1 AT4G32490 40.206 97 54 3 27 120 33 128 3.40e-14 68.2
MS.gene55509.t1 AT2G23990 39.216 102 54 5 26 120 28 128 4.12e-14 67.8
MS.gene55509.t1 AT5G57920 31.967 122 71 5 18 132 53 169 8.32e-14 67.0
MS.gene55509.t1 AT5G57920 32.927 82 55 0 39 120 42 123 8.65e-14 66.6
MS.gene55509.t1 AT3G53330 35.354 99 61 2 25 120 188 286 9.70e-14 68.2
MS.gene55509.t1 AT4G30590 36.000 100 57 4 27 120 30 128 1.11e-13 66.2
MS.gene55509.t1 AT5G57920 31.250 96 64 1 39 132 41 136 1.34e-13 65.9
MS.gene55509.t1 AT1G08500 30.723 166 91 5 3 145 8 172 2.01e-13 66.2
MS.gene55509.t1 AT1G17800 31.858 113 75 2 7 118 23 134 2.85e-13 63.9
MS.gene55509.t1 AT5G25090 31.667 120 72 3 6 120 12 126 8.52e-13 63.9
MS.gene55509.t1 AT2G02850 32.773 119 73 5 4 119 13 127 1.57e-12 62.0
MS.gene55509.t1 AT1G64640 31.967 122 77 4 19 135 27 147 2.56e-12 62.8
MS.gene55509.t1 AT3G20570 29.012 162 100 4 8 154 13 174 1.07e-11 61.2

Find 45 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAAAGATGTTGTGAAAT+TGG 0.298026 6.2:+17100699 MS.gene55509:CDS
GACTTTGATTCATGGAGTTC+AGG 0.309655 6.2:+17100023 MS.gene55509:CDS
CATCCTCAGACTTTGATTCA+TGG 0.350091 6.2:+17100015 MS.gene55509:CDS
CAATACCTCCTTTGTGATCA+AGG 0.383649 6.2:-17099952 None:intergenic
CCAGTGCTTAAGGAGTTTAG+TGG 0.413304 6.2:-17100679 None:intergenic
GTAAAGATCACAGTAGGAAA+TGG 0.422825 6.2:+17100784 MS.gene55509:CDS
CTTGATCACAAAGGAGGTAT+TGG 0.426661 6.2:+17099953 MS.gene55509:CDS
CAGTGCTTAAGGAGTTTAGT+GGG 0.442231 6.2:-17100678 None:intergenic
CTGAAGATGTATCAGATGTA+GGG 0.476612 6.2:-17100882 None:intergenic
CGGGGAGGATGCAGAGGAAG+AGG 0.479314 6.2:-17100809 None:intergenic
GCTGAAGATGTATCAGATGT+AGG 0.484922 6.2:-17100883 None:intergenic
TACTTCACATGTGGTACCTT+AGG 0.496106 6.2:+17100739 MS.gene55509:CDS
TCAGGTCAAACATTCAAAGT+TGG 0.497486 6.2:+17100041 MS.gene55509:CDS
TGTTGGTGGAAGCCAAGGTT+GGG 0.522773 6.2:+17099989 MS.gene55509:CDS
TTCAAAGTTGGAGATCAACT+TGG 0.523708 6.2:+17100053 MS.gene55509:CDS
CCACTAAACTCCTTAAGCAC+TGG 0.524379 6.2:+17100679 MS.gene55509:CDS
CATAATGTTGGTGGAAGCCA+AGG 0.524902 6.2:+17099984 MS.gene55509:CDS
ACCTTAGGTCATTGTGGTCA+AGG 0.528788 6.2:+17100754 MS.gene55509:CDS
ACCTTGACCACAATGACCTA+AGG 0.541983 6.2:-17100755 None:intergenic
CTGAGGATGGATCCCAACCT+TGG 0.548343 6.2:-17100001 None:intergenic
ATGGTGATGATGAAGACGAC+GGG 0.553747 6.2:-17100828 None:intergenic
TCATTGTGGTCAAGGTATGA+AGG 0.554331 6.2:+17100762 MS.gene55509:CDS
AATTATGTTCTTGCACCCCA+TGG 0.558852 6.2:-17099910 None:intergenic
CATGAATCAAAGTCTGAGGA+TGG 0.566327 6.2:-17100014 None:intergenic
CATGTGAAGTACCTTGTACC+TGG 0.571913 6.2:-17100727 None:intergenic
ATGTTGGTGGAAGCCAAGGT+TGG 0.578734 6.2:+17099988 MS.gene55509:CDS
GCAACACAACATAATGTTGG+TGG 0.579218 6.2:+17099975 MS.gene55509:CDS
ATGAAGGTAAAGATCACAGT+AGG 0.591873 6.2:+17100778 MS.gene55509:CDS
AGACGACGGGGAGGATGCAG+AGG 0.606454 6.2:-17100815 None:intergenic
TTGGCAACACAACATAATGT+TGG 0.615720 6.2:+17099972 MS.gene55509:CDS
AATTGGACAAGCCAGGTACA+AGG 0.622027 6.2:+17100716 MS.gene55509:CDS
AGTGCTTAAGGAGTTTAGTG+GGG 0.622685 6.2:-17100677 None:intergenic
ACTCCATGAATCAAAGTCTG+AGG 0.627608 6.2:-17100018 None:intergenic
TGAAGATGTATCAGATGTAG+GGG 0.632402 6.2:-17100881 None:intergenic
TGTGGTACCTTAGGTCATTG+TGG 0.638088 6.2:+17100748 MS.gene55509:CDS
GTTGTGAAATTGGACAAGCC+AGG 0.645162 6.2:+17100709 MS.gene55509:CDS
AAGAGAAGCAAAGTATTGTG+AGG 0.658665 6.2:-17100905 None:intergenic
AGCTACCTTGATCACAAAGG+AGG 0.662032 6.2:+17099947 MS.gene55509:CDS
GTTAGCTACCTTGATCACAA+AGG 0.669540 6.2:+17099944 MS.gene55509:CDS
GTACACATCTATGCATAGTG+TGG 0.679339 6.2:+17100609 MS.gene55509:CDS
GGTACAAGGTACTTCACATG+TGG 0.691210 6.2:+17100730 MS.gene55509:CDS
TGATGATGAAGACGACGGGG+AGG 0.727873 6.2:-17100824 None:intergenic
GATGACGACGACGATGACGA+TGG 0.730519 6.2:-17100847 None:intergenic
TGGTGATGATGAAGACGACG+GGG 0.752589 6.2:-17100827 None:intergenic
GATGGTGATGATGAAGACGA+CGG 0.758312 6.2:-17100829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACATAATTATTTTTACT+TGG + chr6.2:17100162-17100181 MS.gene55509:intron 10.0%
!! TTCTTATCAAAAAAATTTGT+TGG + chr6.2:17100081-17100100 MS.gene55509:intron 15.0%
!!! ATTTTTCTACTTTCTATTAT+AGG - chr6.2:17100117-17100136 None:intergenic 15.0%
!! ATCAATCAAATATTGCTTAA+CGG - chr6.2:17100458-17100477 None:intergenic 20.0%
! GTTAGTATATTCTCCTTAAT+CGG - chr6.2:17100393-17100412 None:intergenic 25.0%
! TAAACAATGGTATTGTAGAT+GGG + chr6.2:17100254-17100273 MS.gene55509:intron 25.0%
! TTAAACAATGGTATTGTAGA+TGG + chr6.2:17100253-17100272 MS.gene55509:intron 25.0%
!! AACTTAACTAGTTTGAACTT+AGG + chr6.2:17100335-17100354 MS.gene55509:intron 25.0%
!! ACTTAACTAGTTTGAACTTA+GGG + chr6.2:17100336-17100355 MS.gene55509:intron 25.0%
!! CCATTGTTTAAAACTTTGAT+TGG - chr6.2:17100244-17100263 None:intergenic 25.0%
!! TTGTTTAAAACTTTGATTGG+TGG - chr6.2:17100241-17100260 None:intergenic 25.0%
!!! CCAATCAAAGTTTTAAACAA+TGG + chr6.2:17100241-17100260 MS.gene55509:intron 25.0%
!!! GCTAATATCACATTTTTTGT+AGG - chr6.2:17100656-17100675 None:intergenic 25.0%
ACAACTCAATTGTAGCAATA+TGG + chr6.2:17100306-17100325 MS.gene55509:intron 30.0%
ACGTCAAAGGTTATAAATTG+TGG - chr6.2:17100500-17100519 None:intergenic 30.0%
ACGTCTATCCAAAAAAATTG+TGG + chr6.2:17100427-17100446 MS.gene55509:intron 30.0%
TATAACCTTTGACGTGATTA+TGG + chr6.2:17100505-17100524 MS.gene55509:intron 30.0%
TATTTCCATAATCACGTCAA+AGG - chr6.2:17100513-17100532 None:intergenic 30.0%
TGGAAAAGATGTTGTGAAAT+TGG + chr6.2:17100699-17100718 MS.gene55509:CDS 30.0%
! ATATTGCTACAATTGAGTTG+TGG - chr6.2:17100307-17100326 None:intergenic 30.0%
! GTGCAAGAACATAATTTTCT+TGG + chr6.2:17099917-17099936 MS.gene55509:CDS 30.0%
ATGAAGGTAAAGATCACAGT+AGG + chr6.2:17100778-17100797 MS.gene55509:CDS 35.0%
CTGAAGATGTATCAGATGTA+GGG - chr6.2:17100885-17100904 None:intergenic 35.0%
GTAAAGATCACAGTAGGAAA+TGG + chr6.2:17100784-17100803 MS.gene55509:CDS 35.0%
TCAGGTCAAACATTCAAAGT+TGG + chr6.2:17100041-17100060 MS.gene55509:CDS 35.0%
TGAAGATGTATCAGATGTAG+GGG - chr6.2:17100884-17100903 None:intergenic 35.0%
TTCAAAGTTGGAGATCAACT+TGG + chr6.2:17100053-17100072 MS.gene55509:CDS 35.0%
TTGGCAACACAACATAATGT+TGG + chr6.2:17099972-17099991 MS.gene55509:CDS 35.0%
! AACATCTTTTCCAGTGCTTA+AGG - chr6.2:17100692-17100711 None:intergenic 35.0%
!! AAGAGAAGCAAAGTATTGTG+AGG - chr6.2:17100908-17100927 None:intergenic 35.0%
!! TTGAGTTGAAACTCCGATTA+AGG + chr6.2:17100377-17100396 MS.gene55509:intron 35.0%
ACTCCATGAATCAAAGTCTG+AGG - chr6.2:17100021-17100040 None:intergenic 40.0%
AGTGCTTAAGGAGTTTAGTG+GGG - chr6.2:17100680-17100699 None:intergenic 40.0%
CAATACCTCCTTTGTGATCA+AGG - chr6.2:17099955-17099974 None:intergenic 40.0%
CAGTGCTTAAGGAGTTTAGT+GGG - chr6.2:17100681-17100700 None:intergenic 40.0%
CATCCTCAGACTTTGATTCA+TGG + chr6.2:17100015-17100034 MS.gene55509:CDS 40.0%
CATGAATCAAAGTCTGAGGA+TGG - chr6.2:17100017-17100036 None:intergenic 40.0%
GACTTTGATTCATGGAGTTC+AGG + chr6.2:17100023-17100042 MS.gene55509:CDS 40.0%
GCAACACAACATAATGTTGG+TGG + chr6.2:17099975-17099994 MS.gene55509:CDS 40.0%
GCTGAAGATGTATCAGATGT+AGG - chr6.2:17100886-17100905 None:intergenic 40.0%
GTACACATCTATGCATAGTG+TGG + chr6.2:17100609-17100628 MS.gene55509:CDS 40.0%
GTTAGCTACCTTGATCACAA+AGG + chr6.2:17099944-17099963 MS.gene55509:CDS 40.0%
TACTTCACATGTGGTACCTT+AGG + chr6.2:17100739-17100758 MS.gene55509:CDS 40.0%
TCATTGTGGTCAAGGTATGA+AGG + chr6.2:17100762-17100781 MS.gene55509:CDS 40.0%
! CTTGATCACAAAGGAGGTAT+TGG + chr6.2:17099953-17099972 MS.gene55509:CDS 40.0%
AATTGGACAAGCCAGGTACA+AGG + chr6.2:17100716-17100735 MS.gene55509:CDS 45.0%
ACCTTAGGTCATTGTGGTCA+AGG + chr6.2:17100754-17100773 MS.gene55509:CDS 45.0%
ACCTTGACCACAATGACCTA+AGG - chr6.2:17100758-17100777 None:intergenic 45.0%
AGCTACCTTGATCACAAAGG+AGG + chr6.2:17099947-17099966 MS.gene55509:CDS 45.0%
CCACTAAACTCCTTAAGCAC+TGG + chr6.2:17100679-17100698 MS.gene55509:CDS 45.0%
CCAGTGCTTAAGGAGTTTAG+TGG - chr6.2:17100682-17100701 None:intergenic 45.0%
GTTGTGAAATTGGACAAGCC+AGG + chr6.2:17100709-17100728 MS.gene55509:CDS 45.0%
TGTGGTACCTTAGGTCATTG+TGG + chr6.2:17100748-17100767 MS.gene55509:CDS 45.0%
! ATGGTGATGATGAAGACGAC+GGG - chr6.2:17100831-17100850 None:intergenic 45.0%
! CATAATGTTGGTGGAAGCCA+AGG + chr6.2:17099984-17100003 MS.gene55509:CDS 45.0%
! CATGTGAAGTACCTTGTACC+TGG - chr6.2:17100730-17100749 None:intergenic 45.0%
! GATGGTGATGATGAAGACGA+CGG - chr6.2:17100832-17100851 None:intergenic 45.0%
! GGTACAAGGTACTTCACATG+TGG + chr6.2:17100730-17100749 MS.gene55509:CDS 45.0%
!!! CGGCACTGCCACAATTTTTT+TGG - chr6.2:17100438-17100457 None:intergenic 45.0%
! ATGTTGGTGGAAGCCAAGGT+TGG + chr6.2:17099988-17100007 MS.gene55509:CDS 50.0%
! TGGTGATGATGAAGACGACG+GGG - chr6.2:17100830-17100849 None:intergenic 50.0%
! TGTTGGTGGAAGCCAAGGTT+GGG + chr6.2:17099989-17100008 MS.gene55509:CDS 50.0%
CTGAGGATGGATCCCAACCT+TGG - chr6.2:17100004-17100023 None:intergenic 55.0%
GATGACGACGACGATGACGA+TGG - chr6.2:17100850-17100869 None:intergenic 55.0%
! TGATGATGAAGACGACGGGG+AGG - chr6.2:17100827-17100846 None:intergenic 55.0%
AGACGACGGGGAGGATGCAG+AGG - chr6.2:17100818-17100837 None:intergenic 65.0%
CGGGGAGGATGCAGAGGAAG+AGG - chr6.2:17100812-17100831 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 17099912 17100975 17099912 ID=MS.gene55509
chr6.2 mRNA 17099912 17100975 17099912 ID=MS.gene55509.t1;Parent=MS.gene55509
chr6.2 exon 17099912 17100074 17099912 ID=MS.gene55509.t1.exon1;Parent=MS.gene55509.t1
chr6.2 CDS 17099912 17100074 17099912 ID=cds.MS.gene55509.t1;Parent=MS.gene55509.t1
chr6.2 exon 17100602 17100975 17100602 ID=MS.gene55509.t1.exon2;Parent=MS.gene55509.t1
chr6.2 CDS 17100602 17100975 17100602 ID=cds.MS.gene55509.t1;Parent=MS.gene55509.t1
Gene Sequence

>MS.gene55509

ATGGGGTGCAAGAACATAATTTTCTTGGCATTGTTAGCTACCTTGATCACAAAGGAGGTATTGGCAACACAACATAATGTTGGTGGAAGCCAAGGTTGGGATCCATCCTCAGACTTTGATTCATGGAGTTCAGGTCAAACATTCAAAGTTGGAGATCAACTTGGTAAGTTTCTTATCAAAAAAATTTGTTGGTAGAGAAATTCCTATAATAGAAAGTAGAAAAATATTTTTTAATGTTTTAATCATCATTTTTACATAATTATTTTTACTTGGTAAGTTTCAATTATTTGTGATCATTATTAAAATTGCAAATAAAAAATGTTGATCCACCAATCAAAGTTTTAAACAATGGTATTGTAGATGGGACAATTTATGTTTCAATTTCTTTTTCTCCACAACTCAATTGTAGCAATATGGTTGAATAACTTAACTAGTTTGAACTTAGGGTCAAAGAAGTTAAAAGATTTGAGTTGAAACTCCGATTAAGGAGAATATACTAACGTAACAAGTAATATACGTCTATCCAAAAAAATTGTGGCAGTGCCGTTAAGCAATATTTGATTGATATTTTTGCTAGATCAAATACCACAATTTATAACCTTTGACGTGATTATGGAAATAATGTAAAACACTAAAAAAAAATCTGAGAATGTGATGTATTTCTTGATTTTATTGATTTATTTTTTGCAGTTTTCAAGTACACATCTATGCATAGTGTGGTTGAACTAAGTGATGAAAGTGCCTACAAAAAATGTGATATTAGCACCCCACTAAACTCCTTAAGCACTGGAAAAGATGTTGTGAAATTGGACAAGCCAGGTACAAGGTACTTCACATGTGGTACCTTAGGTCATTGTGGTCAAGGTATGAAGGTAAAGATCACAGTAGGAAATGGATCCTCTTCCTCTGCATCCTCCCCGTCGTCTTCATCATCACCATCGTCATCGTCGTCGTCATCATCTACTTCTTCCCCTACATCTGATACATCTTCAGCCTCACAATACTTTGCTTCTCTTATGCTCATTGTCACACTATCTTATGCAACAATATTTTCTTTATTTTAA
Protein sequence

>MS.gene55509.t1

MGCKNIIFLALLATLITKEVLATQHNVGGSQGWDPSSDFDSWSSGQTFKVGDQLVFKYTSMHSVVELSDESAYKKCDISTPLNSLSTGKDVVKLDKPGTRYFTCGTLGHCGQGMKVKITVGNGSSSSASSPSSSSSPSSSSSSSSTSSPTSDTSSASQYFASLMLIVTLSYATIFSLF