Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074086.t1 | XP_003618846.1 | 95.7 | 116 | 4 | 1 | 1 | 115 | 1 | 116 | 5.00E-56 | 226.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074086.t1 | O82081 | 42.3 | 111 | 62 | 2 | 6 | 115 | 7 | 116 | 5.0e-20 | 98.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074086.t1 | G7KNP1 | 95.7 | 116 | 4 | 1 | 1 | 115 | 1 | 116 | 3.6e-56 | 226.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074086 | MS.gene054798 | PPI |
| MS.gene074086 | MS.gene013126 | PPI |
| MS.gene58863 | MS.gene074086 | PPI |
| MS.gene58908 | MS.gene074086 | PPI |
| MS.gene074086 | MS.gene013115 | PPI |
| MS.gene38580 | MS.gene074086 | PPI |
| MS.gene074086 | MS.gene054805 | PPI |
| MS.gene074086 | MS.gene38581 | PPI |
| MS.gene054800 | MS.gene074086 | PPI |
| MS.gene020466 | MS.gene074086 | PPI |
| MS.gene05286 | MS.gene074086 | PPI |
| MS.gene074086 | MS.gene054799 | PPI |
| MS.gene074086 | MS.gene38582 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074086.t1 | MTR_6g023760 | 91.379 | 116 | 9 | 1 | 1 | 115 | 1 | 116 | 1.09e-68 | 204 |
| MS.gene074086.t1 | MTR_6g080660 | 40.000 | 110 | 65 | 1 | 7 | 116 | 10 | 118 | 2.63e-29 | 105 |
| MS.gene074086.t1 | MTR_2g088990 | 42.017 | 119 | 67 | 2 | 1 | 118 | 1 | 118 | 3.71e-29 | 105 |
| MS.gene074086.t1 | MTR_2g025580 | 35.652 | 115 | 71 | 2 | 7 | 118 | 7 | 121 | 6.24e-24 | 90.5 |
| MS.gene074086.t1 | MTR_8g007035 | 46.847 | 111 | 54 | 3 | 8 | 116 | 9 | 116 | 1.61e-23 | 90.1 |
| MS.gene074086.t1 | MTR_3g099580 | 40.708 | 113 | 66 | 1 | 6 | 118 | 7 | 118 | 1.79e-23 | 89.7 |
| MS.gene074086.t1 | MTR_8g007020 | 46.847 | 111 | 54 | 3 | 8 | 116 | 9 | 116 | 2.20e-23 | 89.4 |
| MS.gene074086.t1 | MTR_3g099570 | 40.171 | 117 | 68 | 2 | 1 | 116 | 1 | 116 | 6.93e-23 | 88.2 |
| MS.gene074086.t1 | MTR_5g006040 | 38.261 | 115 | 66 | 4 | 4 | 115 | 6 | 118 | 8.11e-22 | 85.5 |
| MS.gene074086.t1 | MTR_3g099540 | 35.833 | 120 | 74 | 2 | 1 | 118 | 1 | 119 | 3.09e-20 | 80.1 |
| MS.gene074086.t1 | MTR_1g105130 | 33.333 | 105 | 70 | 0 | 7 | 111 | 7 | 111 | 6.86e-20 | 79.7 |
| MS.gene074086.t1 | MTR_1g105120 | 33.333 | 105 | 70 | 0 | 7 | 111 | 7 | 111 | 6.86e-20 | 79.7 |
| MS.gene074086.t1 | MTR_7g086220 | 30.769 | 117 | 80 | 1 | 1 | 116 | 1 | 117 | 2.78e-19 | 78.2 |
| MS.gene074086.t1 | MTR_3g099980 | 36.207 | 116 | 73 | 1 | 4 | 118 | 5 | 120 | 7.05e-19 | 78.6 |
| MS.gene074086.t1 | MTR_7g086140 | 30.702 | 114 | 78 | 1 | 4 | 116 | 5 | 118 | 1.19e-18 | 76.6 |
| MS.gene074086.t1 | MTR_7g086190 | 30.702 | 114 | 78 | 1 | 4 | 116 | 5 | 118 | 1.19e-18 | 76.6 |
| MS.gene074086.t1 | MTR_3g099680 | 36.207 | 116 | 73 | 1 | 4 | 118 | 5 | 120 | 1.21e-18 | 77.8 |
| MS.gene074086.t1 | MTR_1g090190 | 37.895 | 95 | 58 | 1 | 22 | 116 | 20 | 113 | 1.93e-18 | 76.6 |
| MS.gene074086.t1 | MTR_4g007250 | 35.417 | 96 | 61 | 1 | 20 | 115 | 24 | 118 | 4.90e-18 | 75.5 |
| MS.gene074086.t1 | MTR_1g104800 | 34.021 | 97 | 60 | 3 | 22 | 115 | 22 | 117 | 4.95e-18 | 75.5 |
| MS.gene074086.t1 | MTR_8g086360 | 34.783 | 115 | 71 | 2 | 8 | 118 | 5 | 119 | 1.04e-17 | 74.7 |
| MS.gene074086.t1 | MTR_4g067200 | 35.043 | 117 | 68 | 4 | 6 | 115 | 9 | 124 | 1.59e-17 | 73.9 |
| MS.gene074086.t1 | MTR_4g066110 | 35.043 | 117 | 68 | 4 | 6 | 115 | 9 | 124 | 1.59e-17 | 73.9 |
| MS.gene074086.t1 | MTR_0334s0010 | 35.043 | 117 | 72 | 3 | 5 | 118 | 8 | 123 | 2.60e-17 | 73.9 |
| MS.gene074086.t1 | MTR_1g112700 | 33.929 | 112 | 71 | 3 | 9 | 118 | 17 | 127 | 3.25e-17 | 73.6 |
| MS.gene074086.t1 | MTR_7g086160 | 31.034 | 116 | 76 | 4 | 4 | 116 | 5 | 119 | 1.91e-16 | 70.9 |
| MS.gene074086.t1 | MTR_8g088830 | 42.718 | 103 | 49 | 6 | 20 | 118 | 23 | 119 | 3.04e-16 | 69.3 |
| MS.gene074086.t1 | MTR_4g114870 | 36.364 | 99 | 57 | 3 | 25 | 118 | 191 | 288 | 4.19e-16 | 72.8 |
| MS.gene074086.t1 | MTR_4g114870 | 33.621 | 116 | 73 | 1 | 7 | 118 | 11 | 126 | 6.68e-16 | 72.4 |
| MS.gene074086.t1 | MTR_2g043730 | 35.652 | 115 | 69 | 3 | 6 | 118 | 11 | 122 | 4.76e-16 | 68.9 |
| MS.gene074086.t1 | MTR_7g086100 | 28.319 | 113 | 81 | 0 | 4 | 116 | 5 | 117 | 4.79e-16 | 71.2 |
| MS.gene074086.t1 | MTR_2g101300 | 37.391 | 115 | 63 | 5 | 6 | 115 | 10 | 120 | 6.05e-16 | 70.1 |
| MS.gene074086.t1 | MTR_3g089005 | 37.168 | 113 | 65 | 5 | 6 | 116 | 13 | 121 | 1.82e-15 | 67.4 |
| MS.gene074086.t1 | MTR_3g089035 | 38.776 | 98 | 55 | 4 | 22 | 118 | 30 | 123 | 2.02e-15 | 67.4 |
| MS.gene074086.t1 | MTR_7g086090 | 30.769 | 117 | 80 | 1 | 1 | 116 | 1 | 117 | 4.41e-15 | 68.9 |
| MS.gene074086.t1 | MTR_3g105930 | 40.000 | 95 | 52 | 3 | 27 | 116 | 29 | 123 | 5.51e-14 | 65.1 |
| MS.gene074086.t1 | MTR_2g079030 | 32.174 | 115 | 75 | 2 | 4 | 116 | 5 | 118 | 6.35e-14 | 67.0 |
| MS.gene074086.t1 | MTR_4g111640 | 36.364 | 99 | 55 | 3 | 23 | 115 | 30 | 126 | 7.07e-14 | 64.7 |
| MS.gene074086.t1 | MTR_2g090575 | 33.043 | 115 | 74 | 2 | 6 | 118 | 7 | 120 | 7.11e-14 | 66.6 |
| MS.gene074086.t1 | MTR_4g077787 | 34.343 | 99 | 57 | 2 | 23 | 115 | 30 | 126 | 9.67e-14 | 64.3 |
| MS.gene074086.t1 | MTR_8g463180 | 32.759 | 116 | 74 | 3 | 6 | 118 | 5 | 119 | 1.43e-13 | 65.5 |
| MS.gene074086.t1 | MTR_2g043790 | 37.755 | 98 | 58 | 2 | 21 | 118 | 3 | 97 | 1.70e-13 | 61.6 |
| MS.gene074086.t1 | MTR_1g014120 | 33.621 | 116 | 67 | 5 | 6 | 116 | 11 | 121 | 2.05e-13 | 63.5 |
| MS.gene074086.t1 | MTR_8g099220 | 33.628 | 113 | 72 | 1 | 6 | 115 | 10 | 122 | 2.22e-13 | 62.4 |
| MS.gene074086.t1 | MTR_7g086280 | 27.350 | 117 | 84 | 1 | 1 | 116 | 1 | 117 | 2.26e-13 | 63.2 |
| MS.gene074086.t1 | MTR_7g086230 | 27.586 | 116 | 83 | 1 | 1 | 115 | 1 | 116 | 2.28e-13 | 63.2 |
| MS.gene074086.t1 | MTR_6g022170 | 36.634 | 101 | 57 | 4 | 20 | 115 | 29 | 127 | 2.34e-13 | 63.2 |
| MS.gene074086.t1 | MTR_6g013420 | 33.333 | 117 | 73 | 4 | 6 | 118 | 17 | 132 | 5.70e-13 | 62.4 |
| MS.gene074086.t1 | MTR_5g088000 | 29.310 | 116 | 78 | 3 | 6 | 118 | 1 | 115 | 6.20e-13 | 61.2 |
| MS.gene074086.t1 | MTR_8g094990 | 29.310 | 116 | 77 | 2 | 8 | 118 | 6 | 121 | 6.86e-13 | 63.5 |
| MS.gene074086.t1 | MTR_2g083250 | 35.417 | 96 | 56 | 2 | 27 | 116 | 28 | 123 | 1.67e-12 | 62.0 |
| MS.gene074086.t1 | MTR_3g117110 | 33.884 | 121 | 72 | 6 | 1 | 115 | 3 | 121 | 2.22e-12 | 60.5 |
| MS.gene074086.t1 | MTR_6g013170 | 35.789 | 95 | 59 | 2 | 25 | 118 | 31 | 124 | 3.16e-12 | 60.1 |
| MS.gene074086.t1 | MTR_4g078410 | 32.292 | 96 | 63 | 1 | 22 | 115 | 22 | 117 | 3.66e-12 | 60.5 |
| MS.gene074086.t1 | MTR_4g081100 | 34.409 | 93 | 57 | 1 | 27 | 115 | 34 | 126 | 4.64e-12 | 60.5 |
| MS.gene074086.t1 | MTR_4g124280 | 33.663 | 101 | 63 | 2 | 22 | 118 | 22 | 122 | 7.59e-12 | 60.1 |
| MS.gene074086.t1 | MTR_4g112310 | 37.662 | 77 | 46 | 2 | 39 | 115 | 2 | 76 | 1.14e-11 | 57.8 |
| MS.gene074086.t1 | MTR_8g095013 | 28.448 | 116 | 78 | 2 | 8 | 118 | 6 | 121 | 1.27e-11 | 60.1 |
| MS.gene074086.t1 | MTR_2g090580 | 28.571 | 112 | 78 | 1 | 6 | 115 | 8 | 119 | 1.55e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074086.t1 | AT3G27200 | 63.063 | 111 | 41 | 0 | 6 | 116 | 7 | 117 | 2.21e-49 | 155 |
| MS.gene074086.t1 | AT2G32300 | 41.964 | 112 | 63 | 2 | 6 | 116 | 7 | 117 | 4.02e-28 | 103 |
| MS.gene074086.t1 | AT2G32300 | 41.964 | 112 | 63 | 2 | 6 | 116 | 37 | 147 | 1.07e-27 | 103 |
| MS.gene074086.t1 | AT5G07475 | 40.000 | 105 | 62 | 1 | 11 | 115 | 16 | 119 | 5.12e-26 | 96.3 |
| MS.gene074086.t1 | AT2G31050 | 42.857 | 112 | 61 | 3 | 9 | 118 | 13 | 123 | 2.01e-22 | 87.4 |
| MS.gene074086.t1 | AT2G26720 | 39.496 | 119 | 67 | 4 | 4 | 118 | 6 | 123 | 5.10e-22 | 86.7 |
| MS.gene074086.t1 | AT3G18590 | 42.017 | 119 | 60 | 5 | 4 | 115 | 5 | 121 | 9.58e-19 | 77.4 |
| MS.gene074086.t1 | AT1G72230 | 35.965 | 114 | 72 | 1 | 5 | 118 | 3 | 115 | 1.73e-18 | 76.6 |
| MS.gene074086.t1 | AT3G60270 | 40.404 | 99 | 58 | 1 | 20 | 118 | 21 | 118 | 3.13e-18 | 76.3 |
| MS.gene074086.t1 | AT1G48940 | 36.066 | 122 | 69 | 3 | 1 | 115 | 1 | 120 | 5.07e-18 | 75.5 |
| MS.gene074086.t1 | AT4G31840 | 41.525 | 118 | 61 | 6 | 7 | 118 | 10 | 125 | 6.83e-18 | 75.1 |
| MS.gene074086.t1 | AT5G26330 | 34.188 | 117 | 71 | 4 | 7 | 118 | 4 | 119 | 1.29e-17 | 74.7 |
| MS.gene074086.t1 | AT3G60280 | 38.000 | 100 | 61 | 1 | 19 | 118 | 18 | 116 | 3.88e-17 | 73.9 |
| MS.gene074086.t1 | AT2G25060 | 40.833 | 120 | 57 | 6 | 5 | 118 | 18 | 129 | 5.99e-17 | 72.8 |
| MS.gene074086.t1 | AT3G17675 | 34.483 | 116 | 71 | 4 | 6 | 118 | 12 | 125 | 1.04e-16 | 70.9 |
| MS.gene074086.t1 | AT1G22480 | 33.898 | 118 | 67 | 2 | 1 | 118 | 5 | 111 | 1.41e-16 | 71.6 |
| MS.gene074086.t1 | AT1G45063 | 37.864 | 103 | 59 | 4 | 19 | 116 | 141 | 243 | 3.57e-16 | 72.4 |
| MS.gene074086.t1 | AT1G45063 | 31.858 | 113 | 75 | 2 | 8 | 118 | 12 | 124 | 8.48e-13 | 63.2 |
| MS.gene074086.t1 | AT5G53870 | 31.034 | 116 | 77 | 2 | 3 | 116 | 9 | 123 | 4.05e-16 | 72.8 |
| MS.gene074086.t1 | AT5G53870 | 31.034 | 116 | 77 | 2 | 3 | 116 | 9 | 123 | 4.30e-16 | 72.8 |
| MS.gene074086.t1 | AT1G45063 | 38.235 | 102 | 58 | 4 | 19 | 115 | 141 | 242 | 7.70e-16 | 72.0 |
| MS.gene074086.t1 | AT1G45063 | 31.858 | 113 | 75 | 2 | 8 | 118 | 12 | 124 | 1.37e-12 | 63.2 |
| MS.gene074086.t1 | AT2G27035 | 31.034 | 116 | 75 | 5 | 6 | 118 | 9 | 122 | 3.25e-15 | 67.8 |
| MS.gene074086.t1 | AT2G44790 | 39.773 | 88 | 50 | 2 | 33 | 118 | 36 | 122 | 3.56e-15 | 68.6 |
| MS.gene074086.t1 | AT4G12880 | 32.743 | 113 | 71 | 4 | 7 | 116 | 11 | 121 | 4.93e-15 | 67.0 |
| MS.gene074086.t1 | AT1G17800 | 29.630 | 108 | 76 | 0 | 11 | 118 | 27 | 134 | 2.76e-13 | 62.4 |
| MS.gene074086.t1 | AT4G32490 | 38.947 | 95 | 54 | 3 | 27 | 118 | 33 | 126 | 3.00e-13 | 63.9 |
| MS.gene074086.t1 | AT4G30590 | 36.735 | 98 | 55 | 4 | 27 | 118 | 30 | 126 | 3.95e-13 | 62.8 |
| MS.gene074086.t1 | AT5G14345 | 35.652 | 115 | 62 | 5 | 7 | 115 | 1 | 109 | 1.26e-12 | 60.8 |
| MS.gene074086.t1 | AT4G28365 | 37.895 | 95 | 55 | 3 | 27 | 118 | 31 | 124 | 1.76e-12 | 61.2 |
| MS.gene074086.t1 | AT2G23990 | 39.175 | 97 | 51 | 5 | 26 | 115 | 28 | 123 | 1.81e-12 | 61.6 |
| MS.gene074086.t1 | AT5G25090 | 31.034 | 116 | 70 | 3 | 6 | 116 | 12 | 122 | 4.41e-12 | 60.1 |
| MS.gene074086.t1 | AT5G57920 | 32.258 | 93 | 59 | 1 | 28 | 116 | 26 | 118 | 4.74e-12 | 60.1 |
| MS.gene074086.t1 | AT5G57920 | 33.333 | 78 | 52 | 0 | 39 | 116 | 42 | 119 | 5.69e-12 | 59.7 |
| MS.gene074086.t1 | AT5G57920 | 33.333 | 93 | 58 | 2 | 28 | 116 | 59 | 151 | 5.79e-12 | 60.1 |
| MS.gene074086.t1 | AT2G02850 | 31.933 | 119 | 74 | 5 | 3 | 118 | 12 | 126 | 6.36e-12 | 58.5 |
| MS.gene074086.t1 | AT3G53330 | 34.021 | 97 | 61 | 2 | 25 | 118 | 188 | 284 | 1.82e-11 | 59.7 |
| MS.gene074086.t1 | AT5G20230 | 27.835 | 97 | 67 | 1 | 25 | 118 | 25 | 121 | 2.38e-11 | 58.2 |
| MS.gene074086.t1 | AT4G01380 | 33.019 | 106 | 64 | 4 | 18 | 116 | 63 | 168 | 2.40e-11 | 58.5 |
| MS.gene074086.t1 | AT4G27520 | 31.897 | 116 | 73 | 4 | 8 | 118 | 12 | 126 | 4.99e-11 | 58.5 |
| MS.gene074086.t1 | AT3G20570 | 30.476 | 105 | 70 | 2 | 15 | 116 | 20 | 124 | 5.04e-11 | 57.4 |
Find 32 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGATGTTGTGAAAT+TGG | 0.298026 | 6.1:+7166657 | MS.gene074086:CDS |
| GACTTTGATTCATGGAGTTC+AGG | 0.309655 | 6.1:+7165980 | MS.gene074086:CDS |
| CATCCTCAGACTTTGATTCA+TGG | 0.350091 | 6.1:+7165972 | MS.gene074086:CDS |
| CAATACCTCCTTTGTGATCA+AGG | 0.383649 | 6.1:-7165909 | None:intergenic |
| CCAGTGCTTAAGGAGTTTAG+TGG | 0.413304 | 6.1:-7166637 | None:intergenic |
| CTTGATCACAAAGGAGGTAT+TGG | 0.426661 | 6.1:+7165910 | MS.gene074086:CDS |
| CAGTGCTTAAGGAGTTTAGT+GGG | 0.442231 | 6.1:-7166636 | None:intergenic |
| TACTTCACATGTGGTACCTT+AGG | 0.496106 | 6.1:+7166697 | MS.gene074086:CDS |
| TCAGGTCAAACATTCAAAGT+TGG | 0.497486 | 6.1:+7165998 | MS.gene074086:CDS |
| CATAATGTTGGTGGAAGCCA+AGG | 0.521447 | 6.1:+7165941 | MS.gene074086:CDS |
| TGTTGGTGGAAGCCAAGGTT+GGG | 0.522773 | 6.1:+7165946 | MS.gene074086:CDS |
| TTCAAAGTTGGAGATCAACT+TGG | 0.523708 | 6.1:+7166010 | MS.gene074086:CDS |
| CCACTAAACTCCTTAAGCAC+TGG | 0.524379 | 6.1:+7166637 | MS.gene074086:CDS |
| ACCTTAGGTCATTGTGGTCA+AGG | 0.528788 | 6.1:+7166712 | MS.gene074086:CDS |
| ACCTTGACCACAATGACCTA+AGG | 0.541983 | 6.1:-7166713 | None:intergenic |
| CTGAGGATGGATCCCAACCT+TGG | 0.548343 | 6.1:-7165958 | None:intergenic |
| TCATTGTGGTCAAGGTATGA+AGG | 0.554331 | 6.1:+7166720 | MS.gene074086:CDS |
| AATTATGTTCTTGCACCCCA+TGG | 0.558852 | 6.1:-7165867 | None:intergenic |
| CATGAATCAAAGTCTGAGGA+TGG | 0.566327 | 6.1:-7165971 | None:intergenic |
| GCAACGCAACATAATGTTGG+TGG | 0.566800 | 6.1:+7165932 | MS.gene074086:CDS |
| CATGTGAAGTACCTTGTACC+TGG | 0.571913 | 6.1:-7166685 | None:intergenic |
| ATGTTGGTGGAAGCCAAGGT+TGG | 0.578734 | 6.1:+7165945 | MS.gene074086:CDS |
| TTGGCAACGCAACATAATGT+TGG | 0.615340 | 6.1:+7165929 | MS.gene074086:CDS |
| AATTGGACAAGCCAGGTACA+AGG | 0.622027 | 6.1:+7166674 | MS.gene074086:CDS |
| AGTGCTTAAGGAGTTTAGTG+GGG | 0.622685 | 6.1:-7166635 | None:intergenic |
| ACTCCATGAATCAAAGTCTG+AGG | 0.627608 | 6.1:-7165975 | None:intergenic |
| TGTGGTACCTTAGGTCATTG+TGG | 0.638088 | 6.1:+7166706 | MS.gene074086:CDS |
| GTTGTGAAATTGGACAAGCC+AGG | 0.645162 | 6.1:+7166667 | MS.gene074086:CDS |
| AGCTACCTTGATCACAAAGG+AGG | 0.662032 | 6.1:+7165904 | MS.gene074086:CDS |
| GTTAGCTACCTTGATCACAA+AGG | 0.669540 | 6.1:+7165901 | MS.gene074086:CDS |
| GTACACATCTATGCATAGTG+TGG | 0.679339 | 6.1:+7166567 | MS.gene074086:CDS |
| GGTACAAGGTACTTCACATG+TGG | 0.691210 | 6.1:+7166688 | MS.gene074086:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACATAATTATTTTTACT+TGG | + | chr6.1:7166119-7166138 | MS.gene074086:intron | 10.0% |
| !! | TTAATTGATTATATGAAGTT+TGG | + | chr6.1:7166930-7166949 | MS.gene074086:intron | 15.0% |
| !!! | ATTTTTCTACTTTCTATTAT+AGG | - | chr6.1:7166074-7166093 | None:intergenic | 15.0% |
| !! | ATCAATCAAATATTGCTTAA+CGG | - | chr6.1:7166415-7166434 | None:intergenic | 20.0% |
| ! | ACATCAAAGGTTATAAATTG+TGG | - | chr6.1:7166457-7166476 | None:intergenic | 25.0% |
| ! | ACATCTATCCAAAAAAATTG+TGG | + | chr6.1:7166384-7166403 | MS.gene074086:intron | 25.0% |
| ! | GTTAGTATATTCTCCTTAAT+CGG | - | chr6.1:7166350-7166369 | None:intergenic | 25.0% |
| ! | TAAACAATGGTATTGTAGAT+CGG | + | chr6.1:7166211-7166230 | MS.gene074086:intron | 25.0% |
| ! | TATAACCTTTGATGTGATTA+TGG | + | chr6.1:7166462-7166481 | MS.gene074086:intron | 25.0% |
| ! | TATTTCCATAATCACATCAA+AGG | - | chr6.1:7166470-7166489 | None:intergenic | 25.0% |
| !! | CCATTGTTTAAAACTTTGAT+TGG | - | chr6.1:7166201-7166220 | None:intergenic | 25.0% |
| !! | TTGTTTAAAACTTTGATTGG+TGG | - | chr6.1:7166198-7166217 | None:intergenic | 25.0% |
| !!! | CCAATCAAAGTTTTAAACAA+TGG | + | chr6.1:7166198-7166217 | MS.gene074086:intron | 25.0% |
| !!! | GCTAATATCACATTTTTTGT+AGG | - | chr6.1:7166614-7166633 | None:intergenic | 25.0% |
| ACAACTCAATTGTAGCAATA+TGG | + | chr6.1:7166263-7166282 | MS.gene074086:intron | 30.0% | |
| TGGAAAAGATGTTGTGAAAT+TGG | + | chr6.1:7166657-7166676 | MS.gene074086:CDS | 30.0% | |
| ! | AACTCAACTAGTTTGAACTT+AGG | + | chr6.1:7166292-7166311 | MS.gene074086:intron | 30.0% |
| ! | ACTCAACTAGTTTGAACTTA+GGG | + | chr6.1:7166293-7166312 | MS.gene074086:intron | 30.0% |
| ! | ATATTGCTACAATTGAGTTG+TGG | - | chr6.1:7166264-7166283 | None:intergenic | 30.0% |
| ! | GTGCAAGAACATAATTTTCT+TGG | + | chr6.1:7165874-7165893 | MS.gene074086:CDS | 30.0% |
| ATGAAGGTAAAGATCACAGT+AGG | + | chr6.1:7166736-7166755 | MS.gene074086:intron | 35.0% | |
| CTGAAGATGTATCAGATGTA+GGG | - | chr6.1:7166843-7166862 | None:intergenic | 35.0% | |
| GTAAAGATCACAGTAGGAAA+TGG | + | chr6.1:7166742-7166761 | MS.gene074086:intron | 35.0% | |
| TCAGGTCAAACATTCAAAGT+TGG | + | chr6.1:7165998-7166017 | MS.gene074086:CDS | 35.0% | |
| TGAAGATGTATCAGATGTAG+GGG | - | chr6.1:7166842-7166861 | None:intergenic | 35.0% | |
| TTCAAAGTTGGAGATCAACT+TGG | + | chr6.1:7166010-7166029 | MS.gene074086:CDS | 35.0% | |
| ! | AACATCTTTTCCAGTGCTTA+AGG | - | chr6.1:7166650-7166669 | None:intergenic | 35.0% |
| !! | AAGAGAAGCAAAGTATTGTG+AGG | - | chr6.1:7166866-7166885 | None:intergenic | 35.0% |
| !! | TTGAGTTGAAACTCCGATTA+AGG | + | chr6.1:7166334-7166353 | MS.gene074086:intron | 35.0% |
| ACTCCATGAATCAAAGTCTG+AGG | - | chr6.1:7165978-7165997 | None:intergenic | 40.0% | |
| AGTGCTTAAGGAGTTTAGTG+GGG | - | chr6.1:7166638-7166657 | None:intergenic | 40.0% | |
| CAATACCTCCTTTGTGATCA+AGG | - | chr6.1:7165912-7165931 | None:intergenic | 40.0% | |
| CAGTGCTTAAGGAGTTTAGT+GGG | - | chr6.1:7166639-7166658 | None:intergenic | 40.0% | |
| CATCCTCAGACTTTGATTCA+TGG | + | chr6.1:7165972-7165991 | MS.gene074086:CDS | 40.0% | |
| CATGAATCAAAGTCTGAGGA+TGG | - | chr6.1:7165974-7165993 | None:intergenic | 40.0% | |
| GACTTTGATTCATGGAGTTC+AGG | + | chr6.1:7165980-7165999 | MS.gene074086:CDS | 40.0% | |
| GCTGAAGATGTATCAGATGT+AGG | - | chr6.1:7166844-7166863 | None:intergenic | 40.0% | |
| GTACACATCTATGCATAGTG+TGG | + | chr6.1:7166567-7166586 | MS.gene074086:CDS | 40.0% | |
| GTTAGCTACCTTGATCACAA+AGG | + | chr6.1:7165901-7165920 | MS.gene074086:CDS | 40.0% | |
| TACTTCACATGTGGTACCTT+AGG | + | chr6.1:7166697-7166716 | MS.gene074086:CDS | 40.0% | |
| TCATTGTGGTCAAGGTATGA+AGG | + | chr6.1:7166720-7166739 | MS.gene074086:CDS | 40.0% | |
| TTGGCAACGCAACATAATGT+TGG | + | chr6.1:7165929-7165948 | MS.gene074086:CDS | 40.0% | |
| ! | CTTGATCACAAAGGAGGTAT+TGG | + | chr6.1:7165910-7165929 | MS.gene074086:CDS | 40.0% |
| AATTGGACAAGCCAGGTACA+AGG | + | chr6.1:7166674-7166693 | MS.gene074086:CDS | 45.0% | |
| ACCTTAGGTCATTGTGGTCA+AGG | + | chr6.1:7166712-7166731 | MS.gene074086:CDS | 45.0% | |
| ACCTTGACCACAATGACCTA+AGG | - | chr6.1:7166716-7166735 | None:intergenic | 45.0% | |
| AGCTACCTTGATCACAAAGG+AGG | + | chr6.1:7165904-7165923 | MS.gene074086:CDS | 45.0% | |
| CCACTAAACTCCTTAAGCAC+TGG | + | chr6.1:7166637-7166656 | MS.gene074086:CDS | 45.0% | |
| CCAGTGCTTAAGGAGTTTAG+TGG | - | chr6.1:7166640-7166659 | None:intergenic | 45.0% | |
| GCAACGCAACATAATGTTGG+TGG | + | chr6.1:7165932-7165951 | MS.gene074086:CDS | 45.0% | |
| GTTGTGAAATTGGACAAGCC+AGG | + | chr6.1:7166667-7166686 | MS.gene074086:CDS | 45.0% | |
| TGTGGTACCTTAGGTCATTG+TGG | + | chr6.1:7166706-7166725 | MS.gene074086:CDS | 45.0% | |
| ! | ATGGTGATGATGAAGACGAC+GGG | - | chr6.1:7166789-7166808 | None:intergenic | 45.0% |
| ! | CATAATGTTGGTGGAAGCCA+AGG | + | chr6.1:7165941-7165960 | MS.gene074086:CDS | 45.0% |
| ! | CATGTGAAGTACCTTGTACC+TGG | - | chr6.1:7166688-7166707 | None:intergenic | 45.0% |
| ! | GATGGTGATGATGAAGACGA+CGG | - | chr6.1:7166790-7166809 | None:intergenic | 45.0% |
| ! | GGTACAAGGTACTTCACATG+TGG | + | chr6.1:7166688-7166707 | MS.gene074086:CDS | 45.0% |
| !!! | CGGCACTGCCACAATTTTTT+TGG | - | chr6.1:7166395-7166414 | None:intergenic | 45.0% |
| ! | ATGTTGGTGGAAGCCAAGGT+TGG | + | chr6.1:7165945-7165964 | MS.gene074086:CDS | 50.0% |
| ! | TGGTGATGATGAAGACGACG+GGG | - | chr6.1:7166788-7166807 | None:intergenic | 50.0% |
| ! | TGTTGGTGGAAGCCAAGGTT+GGG | + | chr6.1:7165946-7165965 | MS.gene074086:CDS | 50.0% |
| CTGAGGATGGATCCCAACCT+TGG | - | chr6.1:7165961-7165980 | None:intergenic | 55.0% | |
| ! | TGATGATGAAGACGACGGGG+AGG | - | chr6.1:7166785-7166804 | None:intergenic | 55.0% |
| GATGACGACGACGACGACGA+TGG | - | chr6.1:7166808-7166827 | None:intergenic | 60.0% | |
| AGACGACGGGGAGGATGCAG+AGG | - | chr6.1:7166776-7166795 | None:intergenic | 65.0% | |
| CGGGGAGGATGCAGAGGAAG+AGG | - | chr6.1:7166770-7166789 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 7165869 | 7166959 | 7165869 | ID=MS.gene074086 |
| chr6.1 | mRNA | 7165869 | 7166959 | 7165869 | ID=MS.gene074086.t1;Parent=MS.gene074086 |
| chr6.1 | exon | 7165869 | 7166031 | 7165869 | ID=MS.gene074086.t1.exon1;Parent=MS.gene074086.t1 |
| chr6.1 | CDS | 7165869 | 7166031 | 7165869 | ID=cds.MS.gene074086.t1;Parent=MS.gene074086.t1 |
| chr6.1 | exon | 7166560 | 7166741 | 7166560 | ID=MS.gene074086.t1.exon2;Parent=MS.gene074086.t1 |
| chr6.1 | CDS | 7166560 | 7166741 | 7166560 | ID=cds.MS.gene074086.t1;Parent=MS.gene074086.t1 |
| chr6.1 | exon | 7166948 | 7166959 | 7166948 | ID=MS.gene074086.t1.exon3;Parent=MS.gene074086.t1 |
| chr6.1 | CDS | 7166948 | 7166959 | 7166948 | ID=cds.MS.gene074086.t1;Parent=MS.gene074086.t1 |
| Gene Sequence |
| Protein sequence |
