Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020889.t1 | XP_003617956.1 | 98.6 | 565 | 8 | 0 | 1 | 565 | 1 | 565 | 6.80E-284 | 986.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020889.t1 | Q84N37 | 89.7 | 513 | 53 | 0 | 53 | 565 | 1 | 513 | 1.1e-234 | 813.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020889.t1 | G7KEP0 | 98.6 | 565 | 8 | 0 | 1 | 565 | 1 | 565 | 4.9e-284 | 986.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38207 | MS.gene020889 | PPI |
| MS.gene81225 | MS.gene020889 | PPI |
| MS.gene020889 | MS.gene38052 | PPI |
| MS.gene020889 | MS.gene38207 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020889.t1 | MTR_5g097360 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| MS.gene020889.t1 | MTR_4g039650 | 37.363 | 455 | 268 | 10 | 92 | 544 | 785 | 1224 | 1.32e-85 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020889.t1 | AT5G48160 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| MS.gene020889.t1 | AT5G48160 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| MS.gene020889.t1 | AT3G07780 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| MS.gene020889.t1 | AT3G07780 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| MS.gene020889.t1 | AT3G07780 | 67.077 | 568 | 170 | 7 | 1 | 565 | 24 | 577 | 0.0 | 739 |
| MS.gene020889.t1 | AT3G63500 | 33.400 | 500 | 294 | 9 | 13 | 506 | 374 | 840 | 1.94e-78 | 265 |
| MS.gene020889.t1 | AT3G63500 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.07e-77 | 266 |
| MS.gene020889.t1 | AT3G63500 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.07e-77 | 266 |
| MS.gene020889.t1 | AT1G14740 | 34.396 | 439 | 243 | 6 | 89 | 522 | 305 | 703 | 6.94e-73 | 247 |
Find 136 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGAATTCCAGTATTTA+TGG | 0.176236 | 5.4:-76568972 | None:intergenic |
| CTAATGACTGCCACCCTTTC+CGG | 0.193878 | 5.4:+76570499 | MS.gene020889:CDS |
| GTAAAGGAGATCATGGATTT+TGG | 0.213920 | 5.4:-76570448 | None:intergenic |
| TGCCATAAATACTGGAATTC+AGG | 0.237888 | 5.4:+76568970 | MS.gene020889:CDS |
| CTTGAGTTCTTCTGCTTCTC+TGG | 0.253475 | 5.4:-76570124 | None:intergenic |
| GGCACTGATCCACTCTTTAC+AGG | 0.283245 | 5.4:-76569274 | None:intergenic |
| CATCAGCTGGAAGCTGGTTT+TGG | 0.287912 | 5.4:-76569075 | None:intergenic |
| ATCTTTGTCTCTTGTTTCTT+CGG | 0.301294 | 5.4:+76568520 | MS.gene020889:CDS |
| TTAGATTGACTGTCTGCTTT+GGG | 0.315236 | 5.4:-76570480 | None:intergenic |
| ATCCTTGTTGCCATAAATAC+TGG | 0.341420 | 5.4:+76568962 | MS.gene020889:CDS |
| CTTCTGTTTCAAATAGTTGC+TGG | 0.354580 | 5.4:-76570316 | None:intergenic |
| TCCCTCCACGACAGCAATCC+CGG | 0.370544 | 5.4:+76568480 | MS.gene020889:CDS |
| ATCGTGGGATGAACCTCTTT+TGG | 0.374814 | 5.4:+76569455 | MS.gene020889:CDS |
| ATTAGATTGACTGTCTGCTT+TGG | 0.379288 | 5.4:-76570481 | None:intergenic |
| TGGCCTCATTAGCCTTCAAT+TGG | 0.386901 | 5.4:-76570227 | None:intergenic |
| GAGCCTCTCAGCCTCTCGTT+TGG | 0.409388 | 5.4:-76570247 | None:intergenic |
| TGCGGACAGAATCAGTCTTC+AGG | 0.422728 | 5.4:+76568724 | MS.gene020889:CDS |
| GACATTGATTCGAGCTCATC+GGG | 0.423325 | 5.4:+76568928 | MS.gene020889:CDS |
| GTATGAGAAAATCAAATTGC+AGG | 0.425425 | 5.4:+76570371 | MS.gene020889:CDS |
| TTTGTTAGTAGGATCTTTCA+TGG | 0.429043 | 5.4:+76569421 | MS.gene020889:CDS |
| AATAGCATCAGCAGTAGGCC+AGG | 0.431940 | 5.4:-76568627 | None:intergenic |
| GATGTGATTTGTGTTCTCAT+TGG | 0.433032 | 5.4:+76569203 | MS.gene020889:CDS |
| CACCTGAAAACCATTTCACT+TGG | 0.434640 | 5.4:-76569295 | None:intergenic |
| GGCTGATATGTTCCAATTGA+AGG | 0.436823 | 5.4:+76570215 | MS.gene020889:CDS |
| CACTTTCAGTAGGTGATTCA+CGG | 0.453441 | 5.4:-76568589 | None:intergenic |
| TGGATCAGTGCCAAGTGAAA+TGG | 0.456270 | 5.4:+76569285 | MS.gene020889:CDS |
| TCTTGCGAAGTCTGATAAAT+CGG | 0.461104 | 5.4:+76570281 | MS.gene020889:CDS |
| CCCGGGATTGCTGTCGTGGA+GGG | 0.462782 | 5.4:-76568481 | None:intergenic |
| GCCATAAATACTGGAATTCA+GGG | 0.463071 | 5.4:+76568971 | MS.gene020889:CDS |
| CCAGGCTCTTTGGAGAGTCT+AGG | 0.472168 | 5.4:-76569930 | None:intergenic |
| GATCGTCACACTTCCAAAAG+AGG | 0.472222 | 5.4:-76569468 | None:intergenic |
| ATACTCATCACGGGTTTGTC+CGG | 0.472397 | 5.4:-76570518 | None:intergenic |
| TGGAAGGTTGATTGCTCCAC+AGG | 0.475183 | 5.4:+76569966 | MS.gene020889:CDS |
| TGGAAGCTAAAGCAGCATGC+AGG | 0.476217 | 5.4:+76569518 | MS.gene020889:CDS |
| TCCAACATTGTGCACCATCA+TGG | 0.480513 | 5.4:+76569368 | MS.gene020889:CDS |
| GGCCATTGTAAAGGAGATCA+TGG | 0.483195 | 5.4:-76570455 | None:intergenic |
| CCAACCCGGGATTGCTGTCG+TGG | 0.486754 | 5.4:-76568485 | None:intergenic |
| CAGAATTGCTGAAGTGGTGC+AGG | 0.488827 | 5.4:+76569999 | MS.gene020889:CDS |
| CGACGAATAACTGACTGATC+AGG | 0.490361 | 5.4:-76568692 | None:intergenic |
| CTTTGGGAGGGCCATTGTAA+AGG | 0.496266 | 5.4:-76570464 | None:intergenic |
| GATTGACTGTCTGCTTTGGG+AGG | 0.497767 | 5.4:-76570477 | None:intergenic |
| ATTGCAGAAGCCACTGTTGT+TGG | 0.498959 | 5.4:-76569119 | None:intergenic |
| GGACTTCGAGTTATCCTTGA+GGG | 0.499090 | 5.4:+76568827 | MS.gene020889:CDS |
| GCTTGTCTCCTGAGGATCCT+AGG | 0.499181 | 5.4:+76568549 | MS.gene020889:CDS |
| AACAATCATCAGCTGGAAGC+TGG | 0.500810 | 5.4:-76569081 | None:intergenic |
| GCAGGAGGCTATACGAAAGA+TGG | 0.504278 | 5.4:+76570017 | MS.gene020889:CDS |
| ACTTCGCAAGAGCAATCCTC+TGG | 0.508330 | 5.4:-76570269 | None:intergenic |
| TGCTATTGCTGCGAAGAAGA+TGG | 0.511035 | 5.4:+76568643 | MS.gene020889:CDS |
| GCAAATAAGTTGCTCCCGTA+TGG | 0.512263 | 5.4:-76569242 | None:intergenic |
| TCAGTCTTCAGGACATTGCT+CGG | 0.513007 | 5.4:+76568735 | MS.gene020889:CDS |
| GGACTTCAGAACTGTTAGGC+TGG | 0.513412 | 5.4:+76569332 | MS.gene020889:CDS |
| CTCACACAGATTGTGCCATA+CGG | 0.513413 | 5.4:+76569227 | MS.gene020889:CDS |
| CCTAGACTCTCCAAAGAGCC+TGG | 0.513548 | 5.4:+76569930 | MS.gene020889:CDS |
| CCCTCCACGACAGCAATCCC+GGG | 0.515207 | 5.4:+76568481 | MS.gene020889:CDS |
| GTAAATACATGCCGTTGGAT+TGG | 0.515809 | 5.4:+76569181 | MS.gene020889:CDS |
| GAAGGCTCGCTTAGCTGTTG+AGG | 0.516614 | 5.4:+76570074 | MS.gene020889:CDS |
| ATCACGGGTTTGTCCGGAAA+GGG | 0.518375 | 5.4:-76570512 | None:intergenic |
| GAGTTTGACCTAGGATCCTC+AGG | 0.521068 | 5.4:-76568557 | None:intergenic |
| GTTCCAATTGAAGGCTAATG+AGG | 0.521411 | 5.4:+76570224 | MS.gene020889:CDS |
| TTGAAGTAAATACATGCCGT+TGG | 0.522716 | 5.4:+76569176 | MS.gene020889:CDS |
| CCCATGATGGTGCACAATGT+TGG | 0.522804 | 5.4:-76569369 | None:intergenic |
| GACTTCAGAACTGTTAGGCT+GGG | 0.527791 | 5.4:+76569333 | MS.gene020889:CDS |
| GGCTGCGACAGACTAATGTT+AGG | 0.528186 | 5.4:-76569004 | None:intergenic |
| ATTGACTGTCTGCTTTGGGA+GGG | 0.528716 | 5.4:-76570476 | None:intergenic |
| AGAAGCAGAAGAACTCAAGA+TGG | 0.529192 | 5.4:+76570128 | MS.gene020889:CDS |
| ACGGGAGCAACTTATTTGCA+TGG | 0.531202 | 5.4:+76569246 | MS.gene020889:CDS |
| AGACATTGATTCGAGCTCAT+CGG | 0.534133 | 5.4:+76568927 | MS.gene020889:CDS |
| ATGAGCTCGAATCAATGTCT+TGG | 0.537389 | 5.4:-76568924 | None:intergenic |
| AGCCTGGAAAATGTAGAAAG+TGG | 0.542593 | 5.4:+76569946 | MS.gene020889:CDS |
| GTTATCCTTGAGGGAGGGAA+TGG | 0.544054 | 5.4:+76568836 | MS.gene020889:CDS |
| TTGGAAGTGTGACGATCTCA+AGG | 0.544756 | 5.4:+76569474 | MS.gene020889:CDS |
| CCAACATTGTGCACCATCAT+GGG | 0.546323 | 5.4:+76569369 | MS.gene020889:CDS |
| CGACAGCAATCCCGGGTTGG+AGG | 0.547481 | 5.4:+76568488 | MS.gene020889:CDS |
| TGTTTGCAGTCCTCCAACCC+GGG | 0.548493 | 5.4:-76568498 | None:intergenic |
| CAGTCTTCAGGACATTGCTC+GGG | 0.548827 | 5.4:+76568736 | MS.gene020889:CDS |
| ATTCTGTTGCATGCCTCCTG+TGG | 0.548889 | 5.4:-76569982 | None:intergenic |
| ACCCGGGATTGCTGTCGTGG+AGG | 0.553588 | 5.4:-76568482 | None:intergenic |
| AAAATCAAGCTCCCTCATCA+AGG | 0.557639 | 5.4:-76569401 | None:intergenic |
| TCACAAGAACAATCATCAGC+TGG | 0.558649 | 5.4:-76569088 | None:intergenic |
| CGGGAGCAACTTATTTGCAT+GGG | 0.558837 | 5.4:+76569247 | MS.gene020889:CDS |
| ACAGAAGTTAAGTGAGGCTG+AGG | 0.558933 | 5.4:+76570332 | MS.gene020889:CDS |
| GGAAGCTAAAGCAGCATGCA+GGG | 0.560687 | 5.4:+76569519 | MS.gene020889:CDS |
| GCTGCGAAGAAGATGGAGAA+TGG | 0.561971 | 5.4:+76568650 | MS.gene020889:CDS |
| TCACACAGATTGTGCCATAC+GGG | 0.562732 | 5.4:+76569228 | MS.gene020889:CDS |
| TCAGGTGTCAATCATGCAGT+AGG | 0.562912 | 5.4:+76569311 | MS.gene020889:CDS |
| ATGTTTGCAGTCCTCCAACC+CGG | 0.569198 | 5.4:-76568499 | None:intergenic |
| GAATACATCAGCATTGAAGA+GGG | 0.569622 | 5.4:-76570426 | None:intergenic |
| ATTGTGCACCATCATGGGAT+GGG | 0.570954 | 5.4:+76569374 | MS.gene020889:CDS |
| CTAGAACTAGCACTTTCAGT+AGG | 0.578007 | 5.4:-76568599 | None:intergenic |
| CATTGTGCACCATCATGGGA+TGG | 0.578553 | 5.4:+76569373 | MS.gene020889:CDS |
| AGTAGGACTTCAGAACTGTT+AGG | 0.579004 | 5.4:+76569328 | MS.gene020889:CDS |
| GGACATTGCTCGGGAAAGAG+TGG | 0.584255 | 5.4:+76568745 | MS.gene020889:CDS |
| GGAATACATCAGCATTGAAG+AGG | 0.585828 | 5.4:-76570427 | None:intergenic |
| CAATTGGAACATATCAGCCT+CGG | 0.587516 | 5.4:-76570211 | None:intergenic |
| GCATGCCATTCCCTCCCTCA+AGG | 0.588171 | 5.4:-76568841 | None:intergenic |
| CAGAAGAACTCAAGATGGAG+AGG | 0.588684 | 5.4:+76570133 | MS.gene020889:CDS |
| CATCACGGGTTTGTCCGGAA+AGG | 0.588989 | 5.4:-76570513 | None:intergenic |
| TTGTGCACCATCATGGGATG+GGG | 0.590598 | 5.4:+76569375 | MS.gene020889:CDS |
| AAGGAATCCCCATCCCATGA+TGG | 0.593870 | 5.4:-76569382 | None:intergenic |
| GAAGATGAGAATGTTCAAGA+AGG | 0.594556 | 5.4:+76570056 | MS.gene020889:CDS |
| ATGGTAGTAAAGACCATCGT+GGG | 0.598320 | 5.4:+76569440 | MS.gene020889:CDS |
| GAGAGGCTGAGAGGCTCCAG+AGG | 0.598779 | 5.4:+76570253 | MS.gene020889:CDS |
| CCACGACAGCAATCCCGGGT+TGG | 0.602524 | 5.4:+76568485 | MS.gene020889:CDS |
| GGATCCTCGCTTGTCTCCTG+AGG | 0.602741 | 5.4:+76568541 | MS.gene020889:CDS |
| TTCCAGTATTTATGGCAACA+AGG | 0.603589 | 5.4:-76568964 | None:intergenic |
| AGAAATATCTCAATCAGCGA+TGG | 0.603706 | 5.4:-76569025 | None:intergenic |
| TGGAAAATGTAGAAAGTGGA+AGG | 0.603944 | 5.4:+76569950 | MS.gene020889:CDS |
| ATGCAACAGAATTGCTGAAG+TGG | 0.604458 | 5.4:+76569993 | MS.gene020889:CDS |
| ATCCATGATCTCCTTTACAA+TGG | 0.611502 | 5.4:+76570453 | MS.gene020889:CDS |
| CTTCGAGTTATCCTTGAGGG+AGG | 0.614388 | 5.4:+76568830 | MS.gene020889:CDS |
| TTCGAGTTATCCTTGAGGGA+GGG | 0.615596 | 5.4:+76568831 | MS.gene020889:CDS |
| GGCTAATGAGGCCAAACGAG+AGG | 0.618483 | 5.4:+76570236 | MS.gene020889:CDS |
| AATTGCTGAAGTGGTGCAGG+AGG | 0.618880 | 5.4:+76570002 | MS.gene020889:CDS |
| AGGTTATCAGAGTTTGACCT+AGG | 0.619181 | 5.4:-76568566 | None:intergenic |
| TATTCGTCGTGTTTCTAGTG+CGG | 0.628975 | 5.4:+76568706 | MS.gene020889:CDS |
| ACGGGTTTGTCCGGAAAGGG+TGG | 0.629535 | 5.4:-76570509 | None:intergenic |
| GTGCTAGTTCTAGAGAAACC+TGG | 0.630706 | 5.4:+76568609 | MS.gene020889:CDS |
| TTTGAAACAGAAGTTAAGTG+AGG | 0.634933 | 5.4:+76570326 | MS.gene020889:CDS |
| GCAGCAATAGCATCAGCAGT+AGG | 0.640719 | 5.4:-76568632 | None:intergenic |
| TGATCGTGAACTAGCAGACA+AGG | 0.644648 | 5.4:+76570101 | MS.gene020889:CDS |
| ACAAATCACATCCAATCCAA+CGG | 0.645811 | 5.4:-76569192 | None:intergenic |
| GGATGGGGATTCCTTGATGA+GGG | 0.648889 | 5.4:+76569390 | MS.gene020889:CDS |
| GGGATGGGGATTCCTTGATG+AGG | 0.651572 | 5.4:+76569389 | MS.gene020889:CDS |
| AGGCCAAACGAGAGGCTGAG+AGG | 0.658904 | 5.4:+76570244 | MS.gene020889:CDS |
| AAGGTTGATTGCTCCACAGG+AGG | 0.659574 | 5.4:+76569969 | MS.gene020889:CDS |
| ATGGGTCCTCCTGTAAAGAG+TGG | 0.666155 | 5.4:+76569265 | MS.gene020889:CDS |
| TCTCGCTTATCGCAGAGCAG+TGG | 0.671798 | 5.4:+76570399 | MS.gene020889:CDS |
| ACTGATCCACTCTTTACAGG+AGG | 0.681348 | 5.4:-76569271 | None:intergenic |
| CATGGTAGTAAAGACCATCG+TGG | 0.686464 | 5.4:+76569439 | MS.gene020889:CDS |
| AAGAACTAGAGAGAATTGTG+AGG | 0.696370 | 5.4:+76570178 | MS.gene020889:CDS |
| GAAACATGCACCAACAACAG+TGG | 0.702295 | 5.4:+76569109 | MS.gene020889:CDS |
| TGGACTTCGAGTTATCCTTG+AGG | 0.704359 | 5.4:+76568826 | MS.gene020889:CDS |
| GGATCCTCAGGAGACAAGCG+AGG | 0.706361 | 5.4:-76568545 | None:intergenic |
| AAAAGAGGTTCATCCCACGA+TGG | 0.725729 | 5.4:-76569453 | None:intergenic |
| AATACATCAGCATTGAAGAG+GGG | 0.734552 | 5.4:-76570425 | None:intergenic |
| TTTCAGTAGGTGATTCACGG+AGG | 0.740333 | 5.4:-76568586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTAAAAAAACTAAATT+AGG | + | chr5.4:76569692-76569711 | MS.gene020889:intron | 10.0% |
| !! | AAAACTGAAAAGTAGAAAAA+TGG | + | chr5.4:76569498-76569517 | MS.gene020889:CDS | 20.0% |
| !! | GAATGAGGATAAATAAATAA+AGG | - | chr5.4:76569878-76569897 | None:intergenic | 20.0% |
| !!! | ATTCGTATGTGTTTAAAATT+GGG | - | chr5.4:76569772-76569791 | None:intergenic | 20.0% |
| !!! | TATTCGTATGTGTTTAAAAT+TGG | - | chr5.4:76569773-76569792 | None:intergenic | 20.0% |
| CTCACTTTCTATATCACATT+TGG | + | chr5.4:76569648-76569667 | MS.gene020889:intron | 30.0% | |
| GTATGAGAAAATCAAATTGC+AGG | + | chr5.4:76570371-76570390 | MS.gene020889:CDS | 30.0% | |
| TTTGGTTATGTCTGAACAAA+TGG | + | chr5.4:76569666-76569685 | MS.gene020889:intron | 30.0% | |
| TTTGTTAGTAGGATCTTTCA+TGG | + | chr5.4:76569421-76569440 | MS.gene020889:CDS | 30.0% | |
| ! | ATCTTTGTCTCTTGTTTCTT+CGG | + | chr5.4:76568520-76568539 | MS.gene020889:CDS | 30.0% |
| ! | TATCTGCATTGACATAATTG+TGG | + | chr5.4:76569604-76569623 | MS.gene020889:intron | 30.0% |
| ! | TTTGAAACAGAAGTTAAGTG+AGG | + | chr5.4:76570326-76570345 | MS.gene020889:CDS | 30.0% |
| !! | GAAAAGCATTTGTTAGAATG+AGG | - | chr5.4:76569893-76569912 | None:intergenic | 30.0% |
| !! | GCAATATTGACTGTTTTTCA+AGG | + | chr5.4:76569541-76569560 | MS.gene020889:CDS | 30.0% |
| AAGAACTAGAGAGAATTGTG+AGG | + | chr5.4:76570178-76570197 | MS.gene020889:CDS | 35.0% | |
| ACAAATCACATCCAATCCAA+CGG | - | chr5.4:76569195-76569214 | None:intergenic | 35.0% | |
| AGAAATATCTCAATCAGCGA+TGG | - | chr5.4:76569028-76569047 | None:intergenic | 35.0% | |
| ATCCATGATCTCCTTTACAA+TGG | + | chr5.4:76570453-76570472 | MS.gene020889:CDS | 35.0% | |
| ATCCTTGTTGCCATAAATAC+TGG | + | chr5.4:76568962-76568981 | MS.gene020889:CDS | 35.0% | |
| ATTAGATTGACTGTCTGCTT+TGG | - | chr5.4:76570484-76570503 | None:intergenic | 35.0% | |
| CTAAAAATTCACCAGGTAGA+CGG | - | chr5.4:76568793-76568812 | None:intergenic | 35.0% | |
| CTTCTGTTTCAAATAGTTGC+TGG | - | chr5.4:76570319-76570338 | None:intergenic | 35.0% | |
| GAAGATGAGAATGTTCAAGA+AGG | + | chr5.4:76570056-76570075 | MS.gene020889:CDS | 35.0% | |
| GCCATAAATACTGGAATTCA+GGG | + | chr5.4:76568971-76568990 | MS.gene020889:CDS | 35.0% | |
| TCCCTGAATTCCAGTATTTA+TGG | - | chr5.4:76568975-76568994 | None:intergenic | 35.0% | |
| TCTTGCGAAGTCTGATAAAT+CGG | + | chr5.4:76570281-76570300 | MS.gene020889:CDS | 35.0% | |
| TGCCATAAATACTGGAATTC+AGG | + | chr5.4:76568970-76568989 | MS.gene020889:CDS | 35.0% | |
| TGGAAAATGTAGAAAGTGGA+AGG | + | chr5.4:76569950-76569969 | MS.gene020889:CDS | 35.0% | |
| TTAGATTGACTGTCTGCTTT+GGG | - | chr5.4:76570483-76570502 | None:intergenic | 35.0% | |
| TTCCAGTATTTATGGCAACA+AGG | - | chr5.4:76568967-76568986 | None:intergenic | 35.0% | |
| TTGAAGTAAATACATGCCGT+TGG | + | chr5.4:76569176-76569195 | MS.gene020889:CDS | 35.0% | |
| ! | AATACATCAGCATTGAAGAG+GGG | - | chr5.4:76570428-76570447 | None:intergenic | 35.0% |
| ! | GAATACATCAGCATTGAAGA+GGG | - | chr5.4:76570429-76570448 | None:intergenic | 35.0% |
| ! | GATGTGATTTGTGTTCTCAT+TGG | + | chr5.4:76569203-76569222 | MS.gene020889:CDS | 35.0% |
| ! | GTAAAGGAGATCATGGATTT+TGG | - | chr5.4:76570451-76570470 | None:intergenic | 35.0% |
| ! | TTCCACTTTCTACATTTTCC+AGG | - | chr5.4:76569951-76569970 | None:intergenic | 35.0% |
| !! | TCTACCTGGTGAATTTTTAG+AGG | + | chr5.4:76568793-76568812 | MS.gene020889:CDS | 35.0% |
| !! | TTTTTAGAGGAGCTGAAAAC+TGG | + | chr5.4:76568806-76568825 | MS.gene020889:CDS | 35.0% |
| AAAATCAAGCTCCCTCATCA+AGG | - | chr5.4:76569404-76569423 | None:intergenic | 40.0% | |
| AGAAGCAGAAGAACTCAAGA+TGG | + | chr5.4:76570128-76570147 | MS.gene020889:CDS | 40.0% | |
| AGCCTGGAAAATGTAGAAAG+TGG | + | chr5.4:76569946-76569965 | MS.gene020889:CDS | 40.0% | |
| AGGTTATCAGAGTTTGACCT+AGG | - | chr5.4:76568569-76568588 | None:intergenic | 40.0% | |
| AGTAGGACTTCAGAACTGTT+AGG | + | chr5.4:76569328-76569347 | MS.gene020889:CDS | 40.0% | |
| ATGAGCTCGAATCAATGTCT+TGG | - | chr5.4:76568927-76568946 | None:intergenic | 40.0% | |
| ATGCAACAGAATTGCTGAAG+TGG | + | chr5.4:76569993-76570012 | MS.gene020889:CDS | 40.0% | |
| ATGGTAGTAAAGACCATCGT+GGG | + | chr5.4:76569440-76569459 | MS.gene020889:CDS | 40.0% | |
| CAATTGGAACATATCAGCCT+CGG | - | chr5.4:76570214-76570233 | None:intergenic | 40.0% | |
| CACCTGAAAACCATTTCACT+TGG | - | chr5.4:76569298-76569317 | None:intergenic | 40.0% | |
| CACTTTCAGTAGGTGATTCA+CGG | - | chr5.4:76568592-76568611 | None:intergenic | 40.0% | |
| CTAGAACTAGCACTTTCAGT+AGG | - | chr5.4:76568602-76568621 | None:intergenic | 40.0% | |
| GGCTGATATGTTCCAATTGA+AGG | + | chr5.4:76570215-76570234 | MS.gene020889:CDS | 40.0% | |
| GTAAATACATGCCGTTGGAT+TGG | + | chr5.4:76569181-76569200 | MS.gene020889:CDS | 40.0% | |
| GTTCCAATTGAAGGCTAATG+AGG | + | chr5.4:76570224-76570243 | MS.gene020889:CDS | 40.0% | |
| TCACAAGAACAATCATCAGC+TGG | - | chr5.4:76569091-76569110 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTAAAAATTCACC+AGG | - | chr5.4:76568800-76568819 | None:intergenic | 40.0% |
| ! | GGAATACATCAGCATTGAAG+AGG | - | chr5.4:76570430-76570449 | None:intergenic | 40.0% |
| ! | GGGAGCTTGATTTTGTTAGT+AGG | + | chr5.4:76569410-76569429 | MS.gene020889:CDS | 40.0% |
| ! | TCTACATTTTCCAGGCTCTT+TGG | - | chr5.4:76569943-76569962 | None:intergenic | 40.0% |
| ! | TGCCAAGTGAAATGGTTTTC+AGG | + | chr5.4:76569293-76569312 | MS.gene020889:CDS | 40.0% |
| !! | AGACATTGATTCGAGCTCAT+CGG | + | chr5.4:76568927-76568946 | MS.gene020889:CDS | 40.0% |
| !! | GGTTTTGGCAAGCTATGTTT+CGG | - | chr5.4:76569063-76569082 | None:intergenic | 40.0% |
| !! | TATTCGTCGTGTTTCTAGTG+CGG | + | chr5.4:76568706-76568725 | MS.gene020889:CDS | 40.0% |
| AAAAGAGGTTCATCCCACGA+TGG | - | chr5.4:76569456-76569475 | None:intergenic | 45.0% | |
| AAAGGCAACAGCAGCATATC+TGG | - | chr5.4:76569860-76569879 | None:intergenic | 45.0% | |
| AACAATCATCAGCTGGAAGC+TGG | - | chr5.4:76569084-76569103 | None:intergenic | 45.0% | |
| ACAGAAGTTAAGTGAGGCTG+AGG | + | chr5.4:76570332-76570351 | MS.gene020889:CDS | 45.0% | |
| ACGGGAGCAACTTATTTGCA+TGG | + | chr5.4:76569246-76569265 | MS.gene020889:CDS | 45.0% | |
| ACTGATCCACTCTTTACAGG+AGG | - | chr5.4:76569274-76569293 | None:intergenic | 45.0% | |
| ATTGCAGAAGCCACTGTTGT+TGG | - | chr5.4:76569122-76569141 | None:intergenic | 45.0% | |
| ATTGTGCACCATCATGGGAT+GGG | + | chr5.4:76569374-76569393 | MS.gene020889:CDS | 45.0% | |
| CAGAAGAACTCAAGATGGAG+AGG | + | chr5.4:76570133-76570152 | MS.gene020889:CDS | 45.0% | |
| CATGGTAGTAAAGACCATCG+TGG | + | chr5.4:76569439-76569458 | MS.gene020889:CDS | 45.0% | |
| CCAACATTGTGCACCATCAT+GGG | + | chr5.4:76569369-76569388 | MS.gene020889:CDS | 45.0% | |
| CGACGAATAACTGACTGATC+AGG | - | chr5.4:76568695-76568714 | None:intergenic | 45.0% | |
| CGGGAGCAACTTATTTGCAT+GGG | + | chr5.4:76569247-76569266 | MS.gene020889:CDS | 45.0% | |
| CTAGGTCAAGCTCTTCATGT+AGG | - | chr5.4:76569915-76569934 | None:intergenic | 45.0% | |
| CTCACACAGATTGTGCCATA+CGG | + | chr5.4:76569227-76569246 | MS.gene020889:CDS | 45.0% | |
| CTTGAGTTCTTCTGCTTCTC+TGG | - | chr5.4:76570127-76570146 | None:intergenic | 45.0% | |
| GAAAAAATGCTCCGTCTACC+TGG | + | chr5.4:76568779-76568798 | MS.gene020889:CDS | 45.0% | |
| GAAACATGCACCAACAACAG+TGG | + | chr5.4:76569109-76569128 | MS.gene020889:CDS | 45.0% | |
| GACTTCAGAACTGTTAGGCT+GGG | + | chr5.4:76569333-76569352 | MS.gene020889:CDS | 45.0% | |
| GATCGTCACACTTCCAAAAG+AGG | - | chr5.4:76569471-76569490 | None:intergenic | 45.0% | |
| GCAAATAAGTTGCTCCCGTA+TGG | - | chr5.4:76569245-76569264 | None:intergenic | 45.0% | |
| GGCCATTGTAAAGGAGATCA+TGG | - | chr5.4:76570458-76570477 | None:intergenic | 45.0% | |
| TCACACAGATTGTGCCATAC+GGG | + | chr5.4:76569228-76569247 | MS.gene020889:CDS | 45.0% | |
| TCAGGTGTCAATCATGCAGT+AGG | + | chr5.4:76569311-76569330 | MS.gene020889:CDS | 45.0% | |
| TCAGTCTTCAGGACATTGCT+CGG | + | chr5.4:76568735-76568754 | MS.gene020889:CDS | 45.0% | |
| TCCAACATTGTGCACCATCA+TGG | + | chr5.4:76569368-76569387 | MS.gene020889:CDS | 45.0% | |
| TGATCGTGAACTAGCAGACA+AGG | + | chr5.4:76570101-76570120 | MS.gene020889:CDS | 45.0% | |
| TGCTATTGCTGCGAAGAAGA+TGG | + | chr5.4:76568643-76568662 | MS.gene020889:CDS | 45.0% | |
| TGGATCAGTGCCAAGTGAAA+TGG | + | chr5.4:76569285-76569304 | MS.gene020889:CDS | 45.0% | |
| TGTGAGGCTTAAAAATGCCG+AGG | + | chr5.4:76570194-76570213 | MS.gene020889:CDS | 45.0% | |
| TTTCAGTAGGTGATTCACGG+AGG | - | chr5.4:76568589-76568608 | None:intergenic | 45.0% | |
| ! | ATCGTGGGATGAACCTCTTT+TGG | + | chr5.4:76569455-76569474 | MS.gene020889:CDS | 45.0% |
| ! | GGACTTCGAGTTATCCTTGA+GGG | + | chr5.4:76568827-76568846 | MS.gene020889:CDS | 45.0% |
| ! | TGGACTTCGAGTTATCCTTG+AGG | + | chr5.4:76568826-76568845 | MS.gene020889:CDS | 45.0% |
| ! | TTCGAGTTATCCTTGAGGGA+GGG | + | chr5.4:76568831-76568850 | MS.gene020889:CDS | 45.0% |
| ! | TTGGAAGTGTGACGATCTCA+AGG | + | chr5.4:76569474-76569493 | MS.gene020889:CDS | 45.0% |
| !! | ATTGACTGTCTGCTTTGGGA+GGG | - | chr5.4:76570479-76570498 | None:intergenic | 45.0% |
| !! | GACATTGATTCGAGCTCATC+GGG | + | chr5.4:76568928-76568947 | MS.gene020889:CDS | 45.0% |
| !! | GTGCTAGTTCTAGAGAAACC+TGG | + | chr5.4:76568609-76568628 | MS.gene020889:CDS | 45.0% |
| !! | TGGCCTCATTAGCCTTCAAT+TGG | - | chr5.4:76570230-76570249 | None:intergenic | 45.0% |
| AAGGAATCCCCATCCCATGA+TGG | - | chr5.4:76569385-76569404 | None:intergenic | 50.0% | |
| AATAGCATCAGCAGTAGGCC+AGG | - | chr5.4:76568630-76568649 | None:intergenic | 50.0% | |
| AATTGCTGAAGTGGTGCAGG+AGG | + | chr5.4:76570002-76570021 | MS.gene020889:CDS | 50.0% | |
| ACTTCGCAAGAGCAATCCTC+TGG | - | chr5.4:76570272-76570291 | None:intergenic | 50.0% | |
| ATGGGTCCTCCTGTAAAGAG+TGG | + | chr5.4:76569265-76569284 | MS.gene020889:CDS | 50.0% | |
| ATGTTTGCAGTCCTCCAACC+CGG | - | chr5.4:76568502-76568521 | None:intergenic | 50.0% | |
| ATTCTGTTGCATGCCTCCTG+TGG | - | chr5.4:76569985-76570004 | None:intergenic | 50.0% | |
| CAGAATTGCTGAAGTGGTGC+AGG | + | chr5.4:76569999-76570018 | MS.gene020889:CDS | 50.0% | |
| CAGTCTTCAGGACATTGCTC+GGG | + | chr5.4:76568736-76568755 | MS.gene020889:CDS | 50.0% | |
| CATTGTGCACCATCATGGGA+TGG | + | chr5.4:76569373-76569392 | MS.gene020889:CDS | 50.0% | |
| CTAATGACTGCCACCCTTTC+CGG | + | chr5.4:76570499-76570518 | MS.gene020889:CDS | 50.0% | |
| GAGTTTGACCTAGGATCCTC+AGG | - | chr5.4:76568560-76568579 | None:intergenic | 50.0% | |
| GCAGCAATAGCATCAGCAGT+AGG | - | chr5.4:76568635-76568654 | None:intergenic | 50.0% | |
| GCAGGAGGCTATACGAAAGA+TGG | + | chr5.4:76570017-76570036 | MS.gene020889:CDS | 50.0% | |
| GCTGCGAAGAAGATGGAGAA+TGG | + | chr5.4:76568650-76568669 | MS.gene020889:CDS | 50.0% | |
| GGAAGCTAAAGCAGCATGCA+GGG | + | chr5.4:76569519-76569538 | MS.gene020889:CDS | 50.0% | |
| GGACTTCAGAACTGTTAGGC+TGG | + | chr5.4:76569332-76569351 | MS.gene020889:CDS | 50.0% | |
| GGATGGGGATTCCTTGATGA+GGG | + | chr5.4:76569390-76569409 | MS.gene020889:CDS | 50.0% | |
| GGCTGCGACAGACTAATGTT+AGG | - | chr5.4:76569007-76569026 | None:intergenic | 50.0% | |
| GTTATCCTTGAGGGAGGGAA+TGG | + | chr5.4:76568836-76568855 | MS.gene020889:CDS | 50.0% | |
| TGCGGACAGAATCAGTCTTC+AGG | + | chr5.4:76568724-76568743 | MS.gene020889:CDS | 50.0% | |
| TGGAAGCTAAAGCAGCATGC+AGG | + | chr5.4:76569518-76569537 | MS.gene020889:CDS | 50.0% | |
| TTGTGCACCATCATGGGATG+GGG | + | chr5.4:76569375-76569394 | MS.gene020889:CDS | 50.0% | |
| ! | AAGGTTGATTGCTCCACAGG+AGG | + | chr5.4:76569969-76569988 | MS.gene020889:CDS | 50.0% |
| ! | CCCATGATGGTGCACAATGT+TGG | - | chr5.4:76569372-76569391 | None:intergenic | 50.0% |
| ! | CTTCGAGTTATCCTTGAGGG+AGG | + | chr5.4:76568830-76568849 | MS.gene020889:CDS | 50.0% |
| ! | CTTTGGGAGGGCCATTGTAA+AGG | - | chr5.4:76570467-76570486 | None:intergenic | 50.0% |
| ! | GATTGACTGTCTGCTTTGGG+AGG | - | chr5.4:76570480-76570499 | None:intergenic | 50.0% |
| ! | TGGAAGGTTGATTGCTCCAC+AGG | + | chr5.4:76569966-76569985 | MS.gene020889:CDS | 50.0% |
| !! | CATCAGCTGGAAGCTGGTTT+TGG | - | chr5.4:76569078-76569097 | None:intergenic | 50.0% |
| !! | GGCACTGATCCACTCTTTAC+AGG | - | chr5.4:76569277-76569296 | None:intergenic | 50.0% |
| CCTAGACTCTCCAAAGAGCC+TGG | + | chr5.4:76569930-76569949 | MS.gene020889:CDS | 55.0% | |
| GAAGGCTCGCTTAGCTGTTG+AGG | + | chr5.4:76570074-76570093 | MS.gene020889:CDS | 55.0% | |
| GCTTGTCTCCTGAGGATCCT+AGG | + | chr5.4:76568549-76568568 | MS.gene020889:CDS | 55.0% | |
| GGACATTGCTCGGGAAAGAG+TGG | + | chr5.4:76568745-76568764 | MS.gene020889:CDS | 55.0% | |
| GGCTAATGAGGCCAAACGAG+AGG | + | chr5.4:76570236-76570255 | MS.gene020889:CDS | 55.0% | |
| GGGATGGGGATTCCTTGATG+AGG | + | chr5.4:76569389-76569408 | MS.gene020889:CDS | 55.0% | |
| TCTCGCTTATCGCAGAGCAG+TGG | + | chr5.4:76570399-76570418 | MS.gene020889:CDS | 55.0% | |
| TGTTTGCAGTCCTCCAACCC+GGG | - | chr5.4:76568501-76568520 | None:intergenic | 55.0% | |
| ! | CCAGGCTCTTTGGAGAGTCT+AGG | - | chr5.4:76569933-76569952 | None:intergenic | 55.0% |
| ACGGGTTTGTCCGGAAAGGG+TGG | - | chr5.4:76570512-76570531 | None:intergenic | 60.0% | |
| AGGCCAAACGAGAGGCTGAG+AGG | + | chr5.4:76570244-76570263 | MS.gene020889:CDS | 60.0% | |
| GAGCCTCTCAGCCTCTCGTT+TGG | - | chr5.4:76570250-76570269 | None:intergenic | 60.0% | |
| GCATGCCATTCCCTCCCTCA+AGG | - | chr5.4:76568844-76568863 | None:intergenic | 60.0% | |
| GGATCCTCAGGAGACAAGCG+AGG | - | chr5.4:76568548-76568567 | None:intergenic | 60.0% | |
| GGATCCTCGCTTGTCTCCTG+AGG | + | chr5.4:76568541-76568560 | MS.gene020889:CDS | 60.0% | |
| TCCCTCCACGACAGCAATCC+CGG | + | chr5.4:76568480-76568499 | MS.gene020889:CDS | 60.0% | |
| ACCCGGGATTGCTGTCGTGG+AGG | - | chr5.4:76568485-76568504 | None:intergenic | 65.0% | |
| CCAACCCGGGATTGCTGTCG+TGG | - | chr5.4:76568488-76568507 | None:intergenic | 65.0% | |
| CCACGACAGCAATCCCGGGT+TGG | + | chr5.4:76568485-76568504 | MS.gene020889:CDS | 65.0% | |
| CCCGGGATTGCTGTCGTGGA+GGG | - | chr5.4:76568484-76568503 | None:intergenic | 65.0% | |
| CCCTCCACGACAGCAATCCC+GGG | + | chr5.4:76568481-76568500 | MS.gene020889:CDS | 65.0% | |
| GAGAGGCTGAGAGGCTCCAG+AGG | + | chr5.4:76570253-76570272 | MS.gene020889:CDS | 65.0% | |
| ! | CGACAGCAATCCCGGGTTGG+AGG | + | chr5.4:76568488-76568507 | MS.gene020889:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 76568476 | 76570533 | 76568476 | ID=MS.gene020889 |
| chr5.4 | mRNA | 76568476 | 76570533 | 76568476 | ID=MS.gene020889.t1;Parent=MS.gene020889 |
| chr5.4 | exon | 76568476 | 76569562 | 76568476 | ID=MS.gene020889.t1.exon1;Parent=MS.gene020889.t1 |
| chr5.4 | CDS | 76568476 | 76569562 | 76568476 | ID=cds.MS.gene020889.t1;Parent=MS.gene020889.t1 |
| chr5.4 | exon | 76569923 | 76570533 | 76569923 | ID=MS.gene020889.t1.exon2;Parent=MS.gene020889.t1 |
| chr5.4 | CDS | 76569923 | 76570533 | 76569923 | ID=cds.MS.gene020889.t1;Parent=MS.gene020889.t1 |
| Gene Sequence |
| Protein sequence |
