AlfalfaGEDB | MS.gene38207

M. sativa cultivar XinJiangDaYe / MS.gene38207

KEGG: -
GO: -
PFAM: PF07227.14 PF16312.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38207.t1	XP_003617956.1	98.2	503	9	0	1	503	63	565	3.70E-249	870.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38207.t1	Q84N37	89.3	503	54	0	1	503	11	513	6.2e-229	794.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38207.t1	G7KEP0	98.2	503	9	0	1	503	63	565	2.7e-249	870.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene38207	0.808346	3.24E-50	-1.69E-46
MS.gene049254	MS.gene38207	0.804345	2.26E-49	-1.69E-46
MS.gene049283	MS.gene38207	0.812822	3.49E-51	-1.69E-46
MS.gene049499	MS.gene38207	0.829394	5.28E-55	-1.69E-46
MS.gene049711	MS.gene38207	0.813038	3.13E-51	-1.69E-46
MS.gene049807	MS.gene38207	0.80787	4.09E-50	-1.69E-46
MS.gene049983	MS.gene38207	0.809546	1.79E-50	-1.69E-46
MS.gene050559	MS.gene38207	0.810158	1.32E-50	-1.69E-46
MS.gene050562	MS.gene38207	0.8009	1.16E-48	-1.69E-46
MS.gene050646	MS.gene38207	0.842009	3.36E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene020889	MS.gene38207	PPI
MS.gene38207	MS.gene020889	PPI
MS.gene38207	MS.gene38052	PPI
MS.gene81225	MS.gene38207	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38207.t1	MTR_5g097360	99.404	503	3	0	1	503	63	565	0.0	1035
MS.gene38207.t1	MTR_4g039650	37.363	455	268	10	30	482	785	1224	1.07e-84	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38207.t1	AT5G48160	72.636	497	127	6	14	503	80	574	0.0	731
MS.gene38207.t1	AT5G48160	72.636	497	127	6	14	503	80	574	0.0	731
MS.gene38207.t1	AT3G07780	67.129	505	158	5	2	503	67	566	0.0	665
MS.gene38207.t1	AT3G07780	67.129	505	158	5	2	503	67	566	0.0	665
MS.gene38207.t1	AT3G07780	67.129	505	158	5	2	503	78	577	0.0	664
MS.gene38207.t1	AT3G63500	36.105	421	251	6	30	444	432	840	1.41e-78	263
MS.gene38207.t1	AT3G63500	36.105	421	251	6	30	444	707	1115	3.90e-77	263
MS.gene38207.t1	AT3G63500	36.105	421	251	6	30	444	707	1115	3.90e-77	263
MS.gene38207.t1	AT1G14740	34.169	439	244	6	27	460	305	703	3.73e-72	243

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Find 116 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGTTCATCCCACGA+TGG	0.725729	5.3:-78685561	None:intergenic
AAAATCAAGCTCCCTCATCA+AGG	0.557639	5.3:-78685509	None:intergenic
AAAATGCTCCGTCTACCTGG+TGG	0.635565	5.3:+78684890	MS.gene38207:CDS
AACAATCATCAGCTGGAAGC+TGG	0.500810	5.3:-78685189	None:intergenic
AAGAACTAGAGAGGATTGTG+AGG	0.642172	5.3:+78686286	MS.gene38207:CDS
AAGGAATCCCCATCCCATGA+TGG	0.593870	5.3:-78685490	None:intergenic
AAGGTTGATTGCTCCACAGG+AGG	0.659574	5.3:+78686077	MS.gene38207:CDS
AATACATCAGCATTGAAGAG+GGG	0.734552	5.3:-78686533	None:intergenic
AATTGCTGAAGTGGTGCAGG+AGG	0.618880	5.3:+78686110	MS.gene38207:CDS
ACAAATCACATCCAATCCAA+CGG	0.645811	5.3:-78685300	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCACTTTCTATATCACATT+TGG	+	chr5.3:78685756-78685775	MS.gene38207:intron	30.0%
GTATGAGAAAATCAAATTGC+AGG	+	chr5.3:78686479-78686498	MS.gene38207:CDS	30.0%
TTTGGTTATGTCTGAACAAA+TGG	+	chr5.3:78685774-78685793	MS.gene38207:intron	30.0%
TTTGTTAGTAGGATCTTTCA+TGG	+	chr5.3:78685529-78685548	MS.gene38207:CDS	30.0%
ACAAATCACATCCAATCCAA+CGG	-	chr5.3:78685303-78685322	None:intergenic	35.0%
AGAAATATCTCAATCAGCGA+TGG	-	chr5.3:78685136-78685155	None:intergenic	35.0%
ATCCATGATCTCCTTTACAA+TGG	+	chr5.3:78686561-78686580	MS.gene38207:CDS	35.0%
ATCCTTGTTGCCATAAATAC+TGG	+	chr5.3:78685070-78685089	MS.gene38207:CDS	35.0%
ATTAGATTGACTGTCTGCTT+TGG	-	chr5.3:78686592-78686611	None:intergenic	35.0%
CTTCTGTTTCAAATAGTTGC+TGG	-	chr5.3:78686427-78686446	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	78684770	78686641	78684770	ID=MS.gene38207
chr5.3	mRNA	78684770	78686641	78684770	ID=MS.gene38207.t1;Parent=MS.gene38207
chr5.3	exon	78684770	78685670	78684770	ID=MS.gene38207.t1.exon1;Parent=MS.gene38207.t1
chr5.3	CDS	78684770	78685670	78684770	ID=cds.MS.gene38207.t1;Parent=MS.gene38207.t1
chr5.3	exon	78686031	78686641	78686031	ID=MS.gene38207.t1.exon2;Parent=MS.gene38207.t1
chr5.3	CDS	78686031	78686641	78686031	ID=cds.MS.gene38207.t1;Parent=MS.gene38207.t1

Gene Sequence

>MS.gene38207

ATGGAGAATGGAAAAGCTGATATTGACTGTCCTGATCAGTCAGTTATTCGTCGTGTTTCTAGTGCGGACAGAATCAGTCTTCAGGACATTGCTCGGGAAAGAGTGGATGTAATACATGAAAAAATGCTCCGTCTACCTGGTGGATTTTTAGAGGAGCTGAAAACTGGACTTCGAGTTATCCTTGAGGGAGGGAATGGCATGCAGCATAGAGATGAGTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTGACAGCCAAGACATTGATTCGAGCTCATCGGGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGATTTTTACATCCTAACATTAGTCTGTCGCAGCCATCGCTGATTGAGATATTTCTCTACAAGAGATGCCGAAACATAGCTTGCCAAAACCAGCTTCCAGCTGATGATTGTTCTTGTGAAACATGCACCAACAACAGTGGCTTCTGCAATCTTTGCATGTGTACTATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATACGGGAGCAACTTATTTGCATGGGTCCTCCTGTAAAGAGTGGATCAGTGCCAAGTGAAATGGTTTTCAGGTGTCAATCATGCAGTAGGACTTCAGAACTGTTAGGCTGGGTTAAAGATGTCTTCCAACATTGTGCACCATCATGGGATGGGGATTCCTTGATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCATCGTGGGATGAACCTCTTTTGGAAGTGTGACGATCTCAAGGAAAAATTGAAAAGTAGAAAAATGGAAGCTAAAGCAGCATGCAGGGCAATATTGACTGTTTTTCAAGGTATAAAATTTATAATTTACTTGCAAATTGTAGTCTTCAAATATCTGCATTGACATAATTGTGGTTTGCACTTTTCTTTTTCTCACTCACTTTCTATATCACATTTGGTTATGTCTGAACAAATGGTAATTCATTAAAAAAACTAAATTAGGAGCACATAAGAATAAGATGATAGATGCAAACTGTCTGTTGTCTCTTCTTTAAAACCCAATTTTAAACACATACGAATAAAATGATAGTCGCAATAGTTAGAAAAGCATCTATAATAAATAAAAGTTTATGCTACAGTTTCAACCAGATATGCTGCTGTTGCCTTTATTTATTTATCCTCATTCTAACAAATGCTTTTCCTACATGAAGAGCTTGACCTAGACTCTCCAAAGAGCCTGGAAAATGTAGAAAGTGGAAGGTTGATTGCTCCACAGGAGGCATGCAACAGAATTGCTGAAGTGGTGCAGGAGGCTATACGAAAGATGGAATTTGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTAGCTGTTGAGGCTTGTGATCGTGAACTAGCAGACAAGGCCAGAGAAGCAGAAGAACTCAAGATGGAGAGGCAAAAAAAGAAGTCACAGATTGAAGAACTAGAGAGGATTGTGAGGCTTAAAAATGCCGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCCAAACGAGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCGAAGTCTGATAAATCGGAAGAAGAATATACCAGCAACTATTTGAAACAGAAGTTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAAATCAAATTGCAGGAGAGTTCTCGCTTATCGCAGAGCAGTGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTCCTTTACAATGGCCCTCCCAAAGCAGACAGTCAATCTAATGACTGCCACCCTTTCCGGACAAACCCGTGA

Protein sequence

>MS.gene38207.t1

MENGKADIDCPDQSVIRRVSSADRISLQDIARERVDVIHEKMLRLPGGFLEELKTGLRVILEGGNGMQHRDEFFILQKLVQSRSDLTAKTLIRAHRVQLEILVAINTGIQGFLHPNISLSQPSLIEIFLYKRCRNIACQNQLPADDCSCETCTNNSGFCNLCMCTICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPPVKSGSVPSEMVFRCQSCSRTSELLGWVKDVFQHCAPSWDGDSLMRELDFVSRIFHGSKDHRGMNLFWKCDDLKEKLKSRKMEAKAACRAILTVFQELDLDSPKSLENVESGRLIAPQEACNRIAEVVQEAIRKMEFVADEKMRMFKKARLAVEACDRELADKAREAEELKMERQKKKSQIEELERIVRLKNAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQESSRLSQSSGDPSSMLMYSKIHDLLYNGPPKADSQSNDCHPFRTNP