Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38052.t1 | XP_003617956.1 | 98.6 | 565 | 8 | 0 | 1 | 565 | 1 | 565 | 6.80E-284 | 986.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38052.t1 | Q84N37 | 89.7 | 513 | 53 | 0 | 53 | 565 | 1 | 513 | 1.1e-234 | 813.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38052.t1 | G7KEP0 | 98.6 | 565 | 8 | 0 | 1 | 565 | 1 | 565 | 4.9e-284 | 986.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38207 | MS.gene38052 | PPI |
| MS.gene020889 | MS.gene38052 | PPI |
| MS.gene81225 | MS.gene38052 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38052.t1 | MTR_5g097360 | 99.646 | 565 | 2 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1163 |
| MS.gene38052.t1 | MTR_4g039650 | 37.363 | 455 | 268 | 10 | 92 | 544 | 785 | 1224 | 1.32e-85 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38052.t1 | AT5G48160 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| MS.gene38052.t1 | AT5G48160 | 70.087 | 575 | 149 | 10 | 1 | 565 | 13 | 574 | 0.0 | 797 |
| MS.gene38052.t1 | AT3G07780 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| MS.gene38052.t1 | AT3G07780 | 67.077 | 568 | 170 | 7 | 1 | 565 | 13 | 566 | 0.0 | 740 |
| MS.gene38052.t1 | AT3G07780 | 67.077 | 568 | 170 | 7 | 1 | 565 | 24 | 577 | 0.0 | 739 |
| MS.gene38052.t1 | AT3G63500 | 33.400 | 500 | 294 | 9 | 13 | 506 | 374 | 840 | 1.94e-78 | 265 |
| MS.gene38052.t1 | AT3G63500 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.07e-77 | 266 |
| MS.gene38052.t1 | AT3G63500 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 2.07e-77 | 266 |
| MS.gene38052.t1 | AT1G14740 | 34.396 | 439 | 243 | 6 | 89 | 522 | 305 | 703 | 6.94e-73 | 247 |
Find 136 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGAATTCCAGTATTTA+TGG | 0.176236 | 5.1:-77704167 | None:intergenic |
| CTAATGACTGCCACCCTTTC+CGG | 0.193878 | 5.1:+77705694 | MS.gene38052:CDS |
| GTAAAGGAGATCATGGATTT+TGG | 0.213920 | 5.1:-77705643 | None:intergenic |
| TGCCATAAATACTGGAATTC+AGG | 0.237888 | 5.1:+77704165 | MS.gene38052:CDS |
| CTTGAGTTCTTCTGCTTCTC+TGG | 0.253475 | 5.1:-77705319 | None:intergenic |
| GGCACTGATCCACTCTTTAC+AGG | 0.283245 | 5.1:-77704469 | None:intergenic |
| CATCAGCTGGAAGCTGGTTT+TGG | 0.287912 | 5.1:-77704270 | None:intergenic |
| ATCTTTGTCTCTTGTTTCTT+CGG | 0.301294 | 5.1:+77703715 | MS.gene38052:CDS |
| TTAGATTGACTGTCTGCTTT+GGG | 0.315236 | 5.1:-77705675 | None:intergenic |
| ATCCTTGTTGCCATAAATAC+TGG | 0.341420 | 5.1:+77704157 | MS.gene38052:CDS |
| CTTCTGTTTCAAATAGTTGC+TGG | 0.354580 | 5.1:-77705511 | None:intergenic |
| TCCCTCCACGACAGCAATCC+CGG | 0.370544 | 5.1:+77703675 | MS.gene38052:CDS |
| ATCGTGGGATGAACCTCTTT+TGG | 0.374814 | 5.1:+77704650 | MS.gene38052:CDS |
| ATTAGATTGACTGTCTGCTT+TGG | 0.379288 | 5.1:-77705676 | None:intergenic |
| TGGCCTCATTAGCCTTCAAT+TGG | 0.386901 | 5.1:-77705422 | None:intergenic |
| GAGCCTCTCAGCCTCTCGTT+TGG | 0.409388 | 5.1:-77705442 | None:intergenic |
| TGCGGACAGAATCAGTCTTC+AGG | 0.422728 | 5.1:+77703919 | MS.gene38052:CDS |
| GACATTGATTCGAGCTCATC+GGG | 0.423325 | 5.1:+77704123 | MS.gene38052:CDS |
| GTATGAGAAAATCAAATTGC+AGG | 0.425425 | 5.1:+77705566 | MS.gene38052:CDS |
| TTTGTTAGTAGGATCTTTCA+TGG | 0.429043 | 5.1:+77704616 | MS.gene38052:CDS |
| AATAGCATCAGCAGTAGGCC+AGG | 0.431940 | 5.1:-77703822 | None:intergenic |
| GATGTGATTTGTGTTCTCAT+TGG | 0.433032 | 5.1:+77704398 | MS.gene38052:CDS |
| CACCTGAAAACCATTTCACT+TGG | 0.434640 | 5.1:-77704490 | None:intergenic |
| GGCTGATATGTTCCAATTGA+AGG | 0.436823 | 5.1:+77705410 | MS.gene38052:CDS |
| CACTTTCAGTAGGTGATTCA+CGG | 0.453441 | 5.1:-77703784 | None:intergenic |
| TGGATCAGTGCCAAGTGAAA+TGG | 0.456270 | 5.1:+77704480 | MS.gene38052:CDS |
| TCTTGCGAAGTCTGATAAAT+CGG | 0.461104 | 5.1:+77705476 | MS.gene38052:CDS |
| CCCGGGATTGCTGTCGTGGA+GGG | 0.462782 | 5.1:-77703676 | None:intergenic |
| GCCATAAATACTGGAATTCA+GGG | 0.463071 | 5.1:+77704166 | MS.gene38052:CDS |
| CCAGGCTCTTTGGAGAGTCT+AGG | 0.472168 | 5.1:-77705125 | None:intergenic |
| GATCGTCACACTTCCAAAAG+AGG | 0.472222 | 5.1:-77704663 | None:intergenic |
| ATACTCATCACGGGTTTGTC+CGG | 0.472397 | 5.1:-77705713 | None:intergenic |
| TGGAAGGTTGATTGCTCCAC+AGG | 0.475183 | 5.1:+77705161 | MS.gene38052:CDS |
| TGGAAGCTAAAGCAGCATGC+AGG | 0.476217 | 5.1:+77704713 | MS.gene38052:CDS |
| TCCAACATTGTGCACCATCA+TGG | 0.480513 | 5.1:+77704563 | MS.gene38052:CDS |
| GGCCATTGTAAAGGAGATCA+TGG | 0.483195 | 5.1:-77705650 | None:intergenic |
| CCAACCCGGGATTGCTGTCG+TGG | 0.486754 | 5.1:-77703680 | None:intergenic |
| CAGAATTGCTGAAGTGGTGC+AGG | 0.488827 | 5.1:+77705194 | MS.gene38052:CDS |
| CGACGAATAACTGACTGATC+AGG | 0.490361 | 5.1:-77703887 | None:intergenic |
| CTTTGGGAGGGCCATTGTAA+AGG | 0.496266 | 5.1:-77705659 | None:intergenic |
| GATTGACTGTCTGCTTTGGG+AGG | 0.497767 | 5.1:-77705672 | None:intergenic |
| ATTGCAGAAGCCACTGTTGT+TGG | 0.498959 | 5.1:-77704314 | None:intergenic |
| GGACTTCGAGTTATCCTTGA+GGG | 0.499090 | 5.1:+77704022 | MS.gene38052:CDS |
| GCTTGTCTCCTGAGGATCCT+AGG | 0.499181 | 5.1:+77703744 | MS.gene38052:CDS |
| AACAATCATCAGCTGGAAGC+TGG | 0.500810 | 5.1:-77704276 | None:intergenic |
| GCAGGAGGCTATACGAAAGA+TGG | 0.504278 | 5.1:+77705212 | MS.gene38052:CDS |
| ACTTCGCAAGAGCAATCCTC+TGG | 0.508330 | 5.1:-77705464 | None:intergenic |
| TGCTATTGCTGCGAAGAAGA+TGG | 0.511035 | 5.1:+77703838 | MS.gene38052:CDS |
| GCAAATAAGTTGCTCCCGTA+TGG | 0.512263 | 5.1:-77704437 | None:intergenic |
| TCAGTCTTCAGGACATTGCT+CGG | 0.513007 | 5.1:+77703930 | MS.gene38052:CDS |
| GGACTTCAGAACTGTTAGGC+TGG | 0.513412 | 5.1:+77704527 | MS.gene38052:CDS |
| CTCACACAGATTGTGCCATA+CGG | 0.513413 | 5.1:+77704422 | MS.gene38052:CDS |
| CCTAGACTCTCCAAAGAGCC+TGG | 0.513548 | 5.1:+77705125 | MS.gene38052:CDS |
| CCCTCCACGACAGCAATCCC+GGG | 0.515207 | 5.1:+77703676 | MS.gene38052:CDS |
| GTAAATACATGCCGTTGGAT+TGG | 0.515809 | 5.1:+77704376 | MS.gene38052:CDS |
| GAAGGCTCGCTTAGCTGTTG+AGG | 0.516614 | 5.1:+77705269 | MS.gene38052:CDS |
| ATCACGGGTTTGTCCGGAAA+GGG | 0.518375 | 5.1:-77705707 | None:intergenic |
| GAGTTTGACCTAGGATCCTC+AGG | 0.521068 | 5.1:-77703752 | None:intergenic |
| GTTCCAATTGAAGGCTAATG+AGG | 0.521411 | 5.1:+77705419 | MS.gene38052:CDS |
| TTGAAGTAAATACATGCCGT+TGG | 0.522716 | 5.1:+77704371 | MS.gene38052:CDS |
| CCCATGATGGTGCACAATGT+TGG | 0.522804 | 5.1:-77704564 | None:intergenic |
| GACTTCAGAACTGTTAGGCT+GGG | 0.527791 | 5.1:+77704528 | MS.gene38052:CDS |
| GGCTGCGACAGACTAATGTT+AGG | 0.528186 | 5.1:-77704199 | None:intergenic |
| ATTGACTGTCTGCTTTGGGA+GGG | 0.528716 | 5.1:-77705671 | None:intergenic |
| AGAAGCAGAAGAACTCAAGA+TGG | 0.529192 | 5.1:+77705323 | MS.gene38052:CDS |
| ACGGGAGCAACTTATTTGCA+TGG | 0.531202 | 5.1:+77704441 | MS.gene38052:CDS |
| AGACATTGATTCGAGCTCAT+CGG | 0.534133 | 5.1:+77704122 | MS.gene38052:CDS |
| ATGAGCTCGAATCAATGTCT+TGG | 0.537389 | 5.1:-77704119 | None:intergenic |
| AGCCTGGAAAATGTAGAAAG+TGG | 0.542593 | 5.1:+77705141 | MS.gene38052:CDS |
| GTTATCCTTGAGGGAGGGAA+TGG | 0.544054 | 5.1:+77704031 | MS.gene38052:CDS |
| TTGGAAGTGTGACGATCTCA+AGG | 0.544756 | 5.1:+77704669 | MS.gene38052:CDS |
| CCAACATTGTGCACCATCAT+GGG | 0.546323 | 5.1:+77704564 | MS.gene38052:CDS |
| CGACAGCAATCCCGGGTTGG+AGG | 0.547481 | 5.1:+77703683 | MS.gene38052:CDS |
| TGTTTGCAGTCCTCCAACCC+GGG | 0.548493 | 5.1:-77703693 | None:intergenic |
| CAGTCTTCAGGACATTGCTC+GGG | 0.548827 | 5.1:+77703931 | MS.gene38052:CDS |
| ATTCTGTTGCATGCCTCCTG+TGG | 0.548889 | 5.1:-77705177 | None:intergenic |
| ACCCGGGATTGCTGTCGTGG+AGG | 0.553588 | 5.1:-77703677 | None:intergenic |
| AAAATCAAGCTCCCTCATCA+AGG | 0.557639 | 5.1:-77704596 | None:intergenic |
| TCACAAGAACAATCATCAGC+TGG | 0.558649 | 5.1:-77704283 | None:intergenic |
| CGGGAGCAACTTATTTGCAT+GGG | 0.558837 | 5.1:+77704442 | MS.gene38052:CDS |
| ACAGAAGTTAAGTGAGGCTG+AGG | 0.558933 | 5.1:+77705527 | MS.gene38052:CDS |
| GGAAGCTAAAGCAGCATGCA+GGG | 0.560687 | 5.1:+77704714 | MS.gene38052:CDS |
| GCTGCGAAGAAGATGGAGAA+TGG | 0.561971 | 5.1:+77703845 | MS.gene38052:CDS |
| TCACACAGATTGTGCCATAC+GGG | 0.562732 | 5.1:+77704423 | MS.gene38052:CDS |
| TCAGGTGTCAATCATGCAGT+AGG | 0.562912 | 5.1:+77704506 | MS.gene38052:CDS |
| ATGTTTGCAGTCCTCCAACC+CGG | 0.569198 | 5.1:-77703694 | None:intergenic |
| GAATACATCAGCATTGAAGA+GGG | 0.569622 | 5.1:-77705621 | None:intergenic |
| ATTGTGCACCATCATGGGAT+GGG | 0.570954 | 5.1:+77704569 | MS.gene38052:CDS |
| CTAGAACTAGCACTTTCAGT+AGG | 0.578007 | 5.1:-77703794 | None:intergenic |
| CATTGTGCACCATCATGGGA+TGG | 0.578553 | 5.1:+77704568 | MS.gene38052:CDS |
| AGTAGGACTTCAGAACTGTT+AGG | 0.579004 | 5.1:+77704523 | MS.gene38052:CDS |
| GGACATTGCTCGGGAAAGAG+TGG | 0.584255 | 5.1:+77703940 | MS.gene38052:CDS |
| GGAATACATCAGCATTGAAG+AGG | 0.585828 | 5.1:-77705622 | None:intergenic |
| CAATTGGAACATATCAGCCT+CGG | 0.587516 | 5.1:-77705406 | None:intergenic |
| GCATGCCATTCCCTCCCTCA+AGG | 0.588171 | 5.1:-77704036 | None:intergenic |
| CAGAAGAACTCAAGATGGAG+AGG | 0.588684 | 5.1:+77705328 | MS.gene38052:CDS |
| CATCACGGGTTTGTCCGGAA+AGG | 0.588989 | 5.1:-77705708 | None:intergenic |
| TTGTGCACCATCATGGGATG+GGG | 0.590598 | 5.1:+77704570 | MS.gene38052:CDS |
| AAGGAATCCCCATCCCATGA+TGG | 0.593870 | 5.1:-77704577 | None:intergenic |
| GAAGATGAGAATGTTCAAGA+AGG | 0.594556 | 5.1:+77705251 | MS.gene38052:CDS |
| ATGGTAGTAAAGACCATCGT+GGG | 0.598320 | 5.1:+77704635 | MS.gene38052:CDS |
| GAGAGGCTGAGAGGCTCCAG+AGG | 0.598779 | 5.1:+77705448 | MS.gene38052:CDS |
| CCACGACAGCAATCCCGGGT+TGG | 0.602524 | 5.1:+77703680 | MS.gene38052:CDS |
| GGATCCTCGCTTGTCTCCTG+AGG | 0.602741 | 5.1:+77703736 | MS.gene38052:CDS |
| TTCCAGTATTTATGGCAACA+AGG | 0.603589 | 5.1:-77704159 | None:intergenic |
| AGAAATATCTCAATCAGCGA+TGG | 0.603706 | 5.1:-77704220 | None:intergenic |
| TGGAAAATGTAGAAAGTGGA+AGG | 0.603944 | 5.1:+77705145 | MS.gene38052:CDS |
| ATGCAACAGAATTGCTGAAG+TGG | 0.604458 | 5.1:+77705188 | MS.gene38052:CDS |
| ATCCATGATCTCCTTTACAA+TGG | 0.611502 | 5.1:+77705648 | MS.gene38052:CDS |
| CTTCGAGTTATCCTTGAGGG+AGG | 0.614388 | 5.1:+77704025 | MS.gene38052:CDS |
| TTCGAGTTATCCTTGAGGGA+GGG | 0.615596 | 5.1:+77704026 | MS.gene38052:CDS |
| GGCTAATGAGGCCAAACGAG+AGG | 0.618483 | 5.1:+77705431 | MS.gene38052:CDS |
| AATTGCTGAAGTGGTGCAGG+AGG | 0.618880 | 5.1:+77705197 | MS.gene38052:CDS |
| AGGTTATCAGAGTTTGACCT+AGG | 0.619181 | 5.1:-77703761 | None:intergenic |
| TATTCGTCGTGTTTCTAGTG+CGG | 0.628975 | 5.1:+77703901 | MS.gene38052:CDS |
| ACGGGTTTGTCCGGAAAGGG+TGG | 0.629535 | 5.1:-77705704 | None:intergenic |
| GTGCTAGTTCTAGAGAAACC+TGG | 0.630706 | 5.1:+77703804 | MS.gene38052:CDS |
| TTTGAAACAGAAGTTAAGTG+AGG | 0.634933 | 5.1:+77705521 | MS.gene38052:CDS |
| GCAGCAATAGCATCAGCAGT+AGG | 0.640719 | 5.1:-77703827 | None:intergenic |
| TGATCGTGAACTAGCAGACA+AGG | 0.644648 | 5.1:+77705296 | MS.gene38052:CDS |
| ACAAATCACATCCAATCCAA+CGG | 0.645811 | 5.1:-77704387 | None:intergenic |
| GGATGGGGATTCCTTGATGA+GGG | 0.648889 | 5.1:+77704585 | MS.gene38052:CDS |
| GGGATGGGGATTCCTTGATG+AGG | 0.651572 | 5.1:+77704584 | MS.gene38052:CDS |
| AGGCCAAACGAGAGGCTGAG+AGG | 0.658904 | 5.1:+77705439 | MS.gene38052:CDS |
| AAGGTTGATTGCTCCACAGG+AGG | 0.659574 | 5.1:+77705164 | MS.gene38052:CDS |
| ATGGGTCCTCCTGTAAAGAG+TGG | 0.666155 | 5.1:+77704460 | MS.gene38052:CDS |
| TCTCGCTTATCGCAGAGCAG+TGG | 0.671798 | 5.1:+77705594 | MS.gene38052:CDS |
| ACTGATCCACTCTTTACAGG+AGG | 0.681348 | 5.1:-77704466 | None:intergenic |
| CATGGTAGTAAAGACCATCG+TGG | 0.686464 | 5.1:+77704634 | MS.gene38052:CDS |
| AAGAACTAGAGAGAATTGTG+AGG | 0.696370 | 5.1:+77705373 | MS.gene38052:CDS |
| GAAACATGCACCAACAACAG+TGG | 0.702295 | 5.1:+77704304 | MS.gene38052:CDS |
| TGGACTTCGAGTTATCCTTG+AGG | 0.704359 | 5.1:+77704021 | MS.gene38052:CDS |
| GGATCCTCAGGAGACAAGCG+AGG | 0.706361 | 5.1:-77703740 | None:intergenic |
| AAAAGAGGTTCATCCCACGA+TGG | 0.725729 | 5.1:-77704648 | None:intergenic |
| AATACATCAGCATTGAAGAG+GGG | 0.734552 | 5.1:-77705620 | None:intergenic |
| TTTCAGTAGGTGATTCACGG+AGG | 0.740333 | 5.1:-77703781 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTAAAAAAACTAAATT+AGG | + | chr5.1:77704887-77704906 | MS.gene38052:intron | 10.0% |
| !! | AAAACTGAAAAGTAGAAAAA+TGG | + | chr5.1:77704693-77704712 | MS.gene38052:CDS | 20.0% |
| !! | GAATGAGGATAAATAAATAA+AGG | - | chr5.1:77705073-77705092 | None:intergenic | 20.0% |
| !!! | ATTCGTATGTGTTTAAAATT+GGG | - | chr5.1:77704967-77704986 | None:intergenic | 20.0% |
| !!! | TATTCGTATGTGTTTAAAAT+TGG | - | chr5.1:77704968-77704987 | None:intergenic | 20.0% |
| CTCACTTTCTATATCACATT+TGG | + | chr5.1:77704843-77704862 | MS.gene38052:intron | 30.0% | |
| GTATGAGAAAATCAAATTGC+AGG | + | chr5.1:77705566-77705585 | MS.gene38052:CDS | 30.0% | |
| TTTGGTTATGTCTGAACAAA+TGG | + | chr5.1:77704861-77704880 | MS.gene38052:intron | 30.0% | |
| TTTGTTAGTAGGATCTTTCA+TGG | + | chr5.1:77704616-77704635 | MS.gene38052:CDS | 30.0% | |
| ! | ATCTTTGTCTCTTGTTTCTT+CGG | + | chr5.1:77703715-77703734 | MS.gene38052:CDS | 30.0% |
| ! | TATCTGCATTGACATAATTG+TGG | + | chr5.1:77704799-77704818 | MS.gene38052:intron | 30.0% |
| ! | TTTGAAACAGAAGTTAAGTG+AGG | + | chr5.1:77705521-77705540 | MS.gene38052:CDS | 30.0% |
| !! | GAAAAGCATTTGTTAGAATG+AGG | - | chr5.1:77705088-77705107 | None:intergenic | 30.0% |
| !! | GCAATATTGACTGTTTTTCA+AGG | + | chr5.1:77704736-77704755 | MS.gene38052:CDS | 30.0% |
| AAGAACTAGAGAGAATTGTG+AGG | + | chr5.1:77705373-77705392 | MS.gene38052:CDS | 35.0% | |
| ACAAATCACATCCAATCCAA+CGG | - | chr5.1:77704390-77704409 | None:intergenic | 35.0% | |
| AGAAATATCTCAATCAGCGA+TGG | - | chr5.1:77704223-77704242 | None:intergenic | 35.0% | |
| ATCCATGATCTCCTTTACAA+TGG | + | chr5.1:77705648-77705667 | MS.gene38052:CDS | 35.0% | |
| ATCCTTGTTGCCATAAATAC+TGG | + | chr5.1:77704157-77704176 | MS.gene38052:CDS | 35.0% | |
| ATTAGATTGACTGTCTGCTT+TGG | - | chr5.1:77705679-77705698 | None:intergenic | 35.0% | |
| CTAAAAATTCACCAGGTAGA+CGG | - | chr5.1:77703988-77704007 | None:intergenic | 35.0% | |
| CTTCTGTTTCAAATAGTTGC+TGG | - | chr5.1:77705514-77705533 | None:intergenic | 35.0% | |
| GAAGATGAGAATGTTCAAGA+AGG | + | chr5.1:77705251-77705270 | MS.gene38052:CDS | 35.0% | |
| GCCATAAATACTGGAATTCA+GGG | + | chr5.1:77704166-77704185 | MS.gene38052:CDS | 35.0% | |
| TCCCTGAATTCCAGTATTTA+TGG | - | chr5.1:77704170-77704189 | None:intergenic | 35.0% | |
| TCTTGCGAAGTCTGATAAAT+CGG | + | chr5.1:77705476-77705495 | MS.gene38052:CDS | 35.0% | |
| TGCCATAAATACTGGAATTC+AGG | + | chr5.1:77704165-77704184 | MS.gene38052:CDS | 35.0% | |
| TGGAAAATGTAGAAAGTGGA+AGG | + | chr5.1:77705145-77705164 | MS.gene38052:CDS | 35.0% | |
| TTAGATTGACTGTCTGCTTT+GGG | - | chr5.1:77705678-77705697 | None:intergenic | 35.0% | |
| TTCCAGTATTTATGGCAACA+AGG | - | chr5.1:77704162-77704181 | None:intergenic | 35.0% | |
| TTGAAGTAAATACATGCCGT+TGG | + | chr5.1:77704371-77704390 | MS.gene38052:CDS | 35.0% | |
| ! | AATACATCAGCATTGAAGAG+GGG | - | chr5.1:77705623-77705642 | None:intergenic | 35.0% |
| ! | GAATACATCAGCATTGAAGA+GGG | - | chr5.1:77705624-77705643 | None:intergenic | 35.0% |
| ! | GATGTGATTTGTGTTCTCAT+TGG | + | chr5.1:77704398-77704417 | MS.gene38052:CDS | 35.0% |
| ! | GTAAAGGAGATCATGGATTT+TGG | - | chr5.1:77705646-77705665 | None:intergenic | 35.0% |
| ! | TTCCACTTTCTACATTTTCC+AGG | - | chr5.1:77705146-77705165 | None:intergenic | 35.0% |
| !! | TCTACCTGGTGAATTTTTAG+AGG | + | chr5.1:77703988-77704007 | MS.gene38052:CDS | 35.0% |
| !! | TTTTTAGAGGAGCTGAAAAC+TGG | + | chr5.1:77704001-77704020 | MS.gene38052:CDS | 35.0% |
| AAAATCAAGCTCCCTCATCA+AGG | - | chr5.1:77704599-77704618 | None:intergenic | 40.0% | |
| AGAAGCAGAAGAACTCAAGA+TGG | + | chr5.1:77705323-77705342 | MS.gene38052:CDS | 40.0% | |
| AGCCTGGAAAATGTAGAAAG+TGG | + | chr5.1:77705141-77705160 | MS.gene38052:CDS | 40.0% | |
| AGGTTATCAGAGTTTGACCT+AGG | - | chr5.1:77703764-77703783 | None:intergenic | 40.0% | |
| AGTAGGACTTCAGAACTGTT+AGG | + | chr5.1:77704523-77704542 | MS.gene38052:CDS | 40.0% | |
| ATGAGCTCGAATCAATGTCT+TGG | - | chr5.1:77704122-77704141 | None:intergenic | 40.0% | |
| ATGCAACAGAATTGCTGAAG+TGG | + | chr5.1:77705188-77705207 | MS.gene38052:CDS | 40.0% | |
| ATGGTAGTAAAGACCATCGT+GGG | + | chr5.1:77704635-77704654 | MS.gene38052:CDS | 40.0% | |
| CAATTGGAACATATCAGCCT+CGG | - | chr5.1:77705409-77705428 | None:intergenic | 40.0% | |
| CACCTGAAAACCATTTCACT+TGG | - | chr5.1:77704493-77704512 | None:intergenic | 40.0% | |
| CACTTTCAGTAGGTGATTCA+CGG | - | chr5.1:77703787-77703806 | None:intergenic | 40.0% | |
| CTAGAACTAGCACTTTCAGT+AGG | - | chr5.1:77703797-77703816 | None:intergenic | 40.0% | |
| GGCTGATATGTTCCAATTGA+AGG | + | chr5.1:77705410-77705429 | MS.gene38052:CDS | 40.0% | |
| GTAAATACATGCCGTTGGAT+TGG | + | chr5.1:77704376-77704395 | MS.gene38052:CDS | 40.0% | |
| GTTCCAATTGAAGGCTAATG+AGG | + | chr5.1:77705419-77705438 | MS.gene38052:CDS | 40.0% | |
| TCACAAGAACAATCATCAGC+TGG | - | chr5.1:77704286-77704305 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTAAAAATTCACC+AGG | - | chr5.1:77703995-77704014 | None:intergenic | 40.0% |
| ! | GGAATACATCAGCATTGAAG+AGG | - | chr5.1:77705625-77705644 | None:intergenic | 40.0% |
| ! | GGGAGCTTGATTTTGTTAGT+AGG | + | chr5.1:77704605-77704624 | MS.gene38052:CDS | 40.0% |
| ! | TCTACATTTTCCAGGCTCTT+TGG | - | chr5.1:77705138-77705157 | None:intergenic | 40.0% |
| ! | TGCCAAGTGAAATGGTTTTC+AGG | + | chr5.1:77704488-77704507 | MS.gene38052:CDS | 40.0% |
| !! | AGACATTGATTCGAGCTCAT+CGG | + | chr5.1:77704122-77704141 | MS.gene38052:CDS | 40.0% |
| !! | GGTTTTGGCAAGCTATGTTT+CGG | - | chr5.1:77704258-77704277 | None:intergenic | 40.0% |
| !! | TATTCGTCGTGTTTCTAGTG+CGG | + | chr5.1:77703901-77703920 | MS.gene38052:CDS | 40.0% |
| AAAAGAGGTTCATCCCACGA+TGG | - | chr5.1:77704651-77704670 | None:intergenic | 45.0% | |
| AAAGGCAACAGCAGCATATC+TGG | - | chr5.1:77705055-77705074 | None:intergenic | 45.0% | |
| AACAATCATCAGCTGGAAGC+TGG | - | chr5.1:77704279-77704298 | None:intergenic | 45.0% | |
| ACAGAAGTTAAGTGAGGCTG+AGG | + | chr5.1:77705527-77705546 | MS.gene38052:CDS | 45.0% | |
| ACGGGAGCAACTTATTTGCA+TGG | + | chr5.1:77704441-77704460 | MS.gene38052:CDS | 45.0% | |
| ACTGATCCACTCTTTACAGG+AGG | - | chr5.1:77704469-77704488 | None:intergenic | 45.0% | |
| ATTGCAGAAGCCACTGTTGT+TGG | - | chr5.1:77704317-77704336 | None:intergenic | 45.0% | |
| ATTGTGCACCATCATGGGAT+GGG | + | chr5.1:77704569-77704588 | MS.gene38052:CDS | 45.0% | |
| CAGAAGAACTCAAGATGGAG+AGG | + | chr5.1:77705328-77705347 | MS.gene38052:CDS | 45.0% | |
| CATGGTAGTAAAGACCATCG+TGG | + | chr5.1:77704634-77704653 | MS.gene38052:CDS | 45.0% | |
| CCAACATTGTGCACCATCAT+GGG | + | chr5.1:77704564-77704583 | MS.gene38052:CDS | 45.0% | |
| CGACGAATAACTGACTGATC+AGG | - | chr5.1:77703890-77703909 | None:intergenic | 45.0% | |
| CGGGAGCAACTTATTTGCAT+GGG | + | chr5.1:77704442-77704461 | MS.gene38052:CDS | 45.0% | |
| CTAGGTCAAGCTCTTCATGT+AGG | - | chr5.1:77705110-77705129 | None:intergenic | 45.0% | |
| CTCACACAGATTGTGCCATA+CGG | + | chr5.1:77704422-77704441 | MS.gene38052:CDS | 45.0% | |
| CTTGAGTTCTTCTGCTTCTC+TGG | - | chr5.1:77705322-77705341 | None:intergenic | 45.0% | |
| GAAAAAATGCTCCGTCTACC+TGG | + | chr5.1:77703974-77703993 | MS.gene38052:CDS | 45.0% | |
| GAAACATGCACCAACAACAG+TGG | + | chr5.1:77704304-77704323 | MS.gene38052:CDS | 45.0% | |
| GACTTCAGAACTGTTAGGCT+GGG | + | chr5.1:77704528-77704547 | MS.gene38052:CDS | 45.0% | |
| GATCGTCACACTTCCAAAAG+AGG | - | chr5.1:77704666-77704685 | None:intergenic | 45.0% | |
| GCAAATAAGTTGCTCCCGTA+TGG | - | chr5.1:77704440-77704459 | None:intergenic | 45.0% | |
| GGCCATTGTAAAGGAGATCA+TGG | - | chr5.1:77705653-77705672 | None:intergenic | 45.0% | |
| TCACACAGATTGTGCCATAC+GGG | + | chr5.1:77704423-77704442 | MS.gene38052:CDS | 45.0% | |
| TCAGGTGTCAATCATGCAGT+AGG | + | chr5.1:77704506-77704525 | MS.gene38052:CDS | 45.0% | |
| TCAGTCTTCAGGACATTGCT+CGG | + | chr5.1:77703930-77703949 | MS.gene38052:CDS | 45.0% | |
| TCCAACATTGTGCACCATCA+TGG | + | chr5.1:77704563-77704582 | MS.gene38052:CDS | 45.0% | |
| TGATCGTGAACTAGCAGACA+AGG | + | chr5.1:77705296-77705315 | MS.gene38052:CDS | 45.0% | |
| TGCTATTGCTGCGAAGAAGA+TGG | + | chr5.1:77703838-77703857 | MS.gene38052:CDS | 45.0% | |
| TGGATCAGTGCCAAGTGAAA+TGG | + | chr5.1:77704480-77704499 | MS.gene38052:CDS | 45.0% | |
| TGTGAGGCTTAAAAATGCCG+AGG | + | chr5.1:77705389-77705408 | MS.gene38052:CDS | 45.0% | |
| TTTCAGTAGGTGATTCACGG+AGG | - | chr5.1:77703784-77703803 | None:intergenic | 45.0% | |
| ! | ATCGTGGGATGAACCTCTTT+TGG | + | chr5.1:77704650-77704669 | MS.gene38052:CDS | 45.0% |
| ! | GGACTTCGAGTTATCCTTGA+GGG | + | chr5.1:77704022-77704041 | MS.gene38052:CDS | 45.0% |
| ! | TGGACTTCGAGTTATCCTTG+AGG | + | chr5.1:77704021-77704040 | MS.gene38052:CDS | 45.0% |
| ! | TTCGAGTTATCCTTGAGGGA+GGG | + | chr5.1:77704026-77704045 | MS.gene38052:CDS | 45.0% |
| ! | TTGGAAGTGTGACGATCTCA+AGG | + | chr5.1:77704669-77704688 | MS.gene38052:CDS | 45.0% |
| !! | ATTGACTGTCTGCTTTGGGA+GGG | - | chr5.1:77705674-77705693 | None:intergenic | 45.0% |
| !! | GACATTGATTCGAGCTCATC+GGG | + | chr5.1:77704123-77704142 | MS.gene38052:CDS | 45.0% |
| !! | GTGCTAGTTCTAGAGAAACC+TGG | + | chr5.1:77703804-77703823 | MS.gene38052:CDS | 45.0% |
| !! | TGGCCTCATTAGCCTTCAAT+TGG | - | chr5.1:77705425-77705444 | None:intergenic | 45.0% |
| AAGGAATCCCCATCCCATGA+TGG | - | chr5.1:77704580-77704599 | None:intergenic | 50.0% | |
| AATAGCATCAGCAGTAGGCC+AGG | - | chr5.1:77703825-77703844 | None:intergenic | 50.0% | |
| AATTGCTGAAGTGGTGCAGG+AGG | + | chr5.1:77705197-77705216 | MS.gene38052:CDS | 50.0% | |
| ACTTCGCAAGAGCAATCCTC+TGG | - | chr5.1:77705467-77705486 | None:intergenic | 50.0% | |
| ATGGGTCCTCCTGTAAAGAG+TGG | + | chr5.1:77704460-77704479 | MS.gene38052:CDS | 50.0% | |
| ATGTTTGCAGTCCTCCAACC+CGG | - | chr5.1:77703697-77703716 | None:intergenic | 50.0% | |
| ATTCTGTTGCATGCCTCCTG+TGG | - | chr5.1:77705180-77705199 | None:intergenic | 50.0% | |
| CAGAATTGCTGAAGTGGTGC+AGG | + | chr5.1:77705194-77705213 | MS.gene38052:CDS | 50.0% | |
| CAGTCTTCAGGACATTGCTC+GGG | + | chr5.1:77703931-77703950 | MS.gene38052:CDS | 50.0% | |
| CATTGTGCACCATCATGGGA+TGG | + | chr5.1:77704568-77704587 | MS.gene38052:CDS | 50.0% | |
| CTAATGACTGCCACCCTTTC+CGG | + | chr5.1:77705694-77705713 | MS.gene38052:CDS | 50.0% | |
| GAGTTTGACCTAGGATCCTC+AGG | - | chr5.1:77703755-77703774 | None:intergenic | 50.0% | |
| GCAGCAATAGCATCAGCAGT+AGG | - | chr5.1:77703830-77703849 | None:intergenic | 50.0% | |
| GCAGGAGGCTATACGAAAGA+TGG | + | chr5.1:77705212-77705231 | MS.gene38052:CDS | 50.0% | |
| GCTGCGAAGAAGATGGAGAA+TGG | + | chr5.1:77703845-77703864 | MS.gene38052:CDS | 50.0% | |
| GGAAGCTAAAGCAGCATGCA+GGG | + | chr5.1:77704714-77704733 | MS.gene38052:CDS | 50.0% | |
| GGACTTCAGAACTGTTAGGC+TGG | + | chr5.1:77704527-77704546 | MS.gene38052:CDS | 50.0% | |
| GGATGGGGATTCCTTGATGA+GGG | + | chr5.1:77704585-77704604 | MS.gene38052:CDS | 50.0% | |
| GGCTGCGACAGACTAATGTT+AGG | - | chr5.1:77704202-77704221 | None:intergenic | 50.0% | |
| GTTATCCTTGAGGGAGGGAA+TGG | + | chr5.1:77704031-77704050 | MS.gene38052:CDS | 50.0% | |
| TGCGGACAGAATCAGTCTTC+AGG | + | chr5.1:77703919-77703938 | MS.gene38052:CDS | 50.0% | |
| TGGAAGCTAAAGCAGCATGC+AGG | + | chr5.1:77704713-77704732 | MS.gene38052:CDS | 50.0% | |
| TTGTGCACCATCATGGGATG+GGG | + | chr5.1:77704570-77704589 | MS.gene38052:CDS | 50.0% | |
| ! | AAGGTTGATTGCTCCACAGG+AGG | + | chr5.1:77705164-77705183 | MS.gene38052:CDS | 50.0% |
| ! | CCCATGATGGTGCACAATGT+TGG | - | chr5.1:77704567-77704586 | None:intergenic | 50.0% |
| ! | CTTCGAGTTATCCTTGAGGG+AGG | + | chr5.1:77704025-77704044 | MS.gene38052:CDS | 50.0% |
| ! | CTTTGGGAGGGCCATTGTAA+AGG | - | chr5.1:77705662-77705681 | None:intergenic | 50.0% |
| ! | GATTGACTGTCTGCTTTGGG+AGG | - | chr5.1:77705675-77705694 | None:intergenic | 50.0% |
| ! | TGGAAGGTTGATTGCTCCAC+AGG | + | chr5.1:77705161-77705180 | MS.gene38052:CDS | 50.0% |
| !! | CATCAGCTGGAAGCTGGTTT+TGG | - | chr5.1:77704273-77704292 | None:intergenic | 50.0% |
| !! | GGCACTGATCCACTCTTTAC+AGG | - | chr5.1:77704472-77704491 | None:intergenic | 50.0% |
| CCTAGACTCTCCAAAGAGCC+TGG | + | chr5.1:77705125-77705144 | MS.gene38052:CDS | 55.0% | |
| GAAGGCTCGCTTAGCTGTTG+AGG | + | chr5.1:77705269-77705288 | MS.gene38052:CDS | 55.0% | |
| GCTTGTCTCCTGAGGATCCT+AGG | + | chr5.1:77703744-77703763 | MS.gene38052:CDS | 55.0% | |
| GGACATTGCTCGGGAAAGAG+TGG | + | chr5.1:77703940-77703959 | MS.gene38052:CDS | 55.0% | |
| GGCTAATGAGGCCAAACGAG+AGG | + | chr5.1:77705431-77705450 | MS.gene38052:CDS | 55.0% | |
| GGGATGGGGATTCCTTGATG+AGG | + | chr5.1:77704584-77704603 | MS.gene38052:CDS | 55.0% | |
| TCTCGCTTATCGCAGAGCAG+TGG | + | chr5.1:77705594-77705613 | MS.gene38052:CDS | 55.0% | |
| TGTTTGCAGTCCTCCAACCC+GGG | - | chr5.1:77703696-77703715 | None:intergenic | 55.0% | |
| ! | CCAGGCTCTTTGGAGAGTCT+AGG | - | chr5.1:77705128-77705147 | None:intergenic | 55.0% |
| ACGGGTTTGTCCGGAAAGGG+TGG | - | chr5.1:77705707-77705726 | None:intergenic | 60.0% | |
| AGGCCAAACGAGAGGCTGAG+AGG | + | chr5.1:77705439-77705458 | MS.gene38052:CDS | 60.0% | |
| GAGCCTCTCAGCCTCTCGTT+TGG | - | chr5.1:77705445-77705464 | None:intergenic | 60.0% | |
| GCATGCCATTCCCTCCCTCA+AGG | - | chr5.1:77704039-77704058 | None:intergenic | 60.0% | |
| GGATCCTCAGGAGACAAGCG+AGG | - | chr5.1:77703743-77703762 | None:intergenic | 60.0% | |
| GGATCCTCGCTTGTCTCCTG+AGG | + | chr5.1:77703736-77703755 | MS.gene38052:CDS | 60.0% | |
| TCCCTCCACGACAGCAATCC+CGG | + | chr5.1:77703675-77703694 | MS.gene38052:CDS | 60.0% | |
| ACCCGGGATTGCTGTCGTGG+AGG | - | chr5.1:77703680-77703699 | None:intergenic | 65.0% | |
| CCAACCCGGGATTGCTGTCG+TGG | - | chr5.1:77703683-77703702 | None:intergenic | 65.0% | |
| CCACGACAGCAATCCCGGGT+TGG | + | chr5.1:77703680-77703699 | MS.gene38052:CDS | 65.0% | |
| CCCGGGATTGCTGTCGTGGA+GGG | - | chr5.1:77703679-77703698 | None:intergenic | 65.0% | |
| CCCTCCACGACAGCAATCCC+GGG | + | chr5.1:77703676-77703695 | MS.gene38052:CDS | 65.0% | |
| GAGAGGCTGAGAGGCTCCAG+AGG | + | chr5.1:77705448-77705467 | MS.gene38052:CDS | 65.0% | |
| ! | CGACAGCAATCCCGGGTTGG+AGG | + | chr5.1:77703683-77703702 | MS.gene38052:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 77703671 | 77705728 | 77703671 | ID=MS.gene38052 |
| chr5.1 | mRNA | 77703671 | 77705728 | 77703671 | ID=MS.gene38052.t1;Parent=MS.gene38052 |
| chr5.1 | exon | 77703671 | 77704757 | 77703671 | ID=MS.gene38052.t1.exon1;Parent=MS.gene38052.t1 |
| chr5.1 | CDS | 77703671 | 77704757 | 77703671 | ID=cds.MS.gene38052.t1;Parent=MS.gene38052.t1 |
| chr5.1 | exon | 77705118 | 77705728 | 77705118 | ID=MS.gene38052.t1.exon2;Parent=MS.gene38052.t1 |
| chr5.1 | CDS | 77705118 | 77705728 | 77705118 | ID=cds.MS.gene38052.t1;Parent=MS.gene38052.t1 |
| Gene Sequence |
| Protein sequence |
