Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81225.t1 | XP_003617956.1 | 98.2 | 565 | 10 | 0 | 1 | 565 | 1 | 565 | 2.00E-283 | 984.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81225.t1 | Q84N37 | 89.3 | 513 | 55 | 0 | 53 | 565 | 1 | 513 | 3.2e-234 | 812.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81225.t1 | G7KEP0 | 98.2 | 565 | 10 | 0 | 1 | 565 | 1 | 565 | 1.4e-283 | 984.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81225 | MS.gene020889 | PPI |
| MS.gene81225 | MS.gene38052 | PPI |
| MS.gene81225 | MS.gene38207 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81225.t1 | MTR_5g097360 | 99.292 | 565 | 4 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1161 |
| MS.gene81225.t1 | MTR_4g039650 | 37.363 | 455 | 268 | 10 | 92 | 544 | 785 | 1224 | 1.43e-85 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81225.t1 | AT5G48160 | 69.913 | 575 | 150 | 10 | 1 | 565 | 13 | 574 | 0.0 | 796 |
| MS.gene81225.t1 | AT5G48160 | 69.913 | 575 | 150 | 10 | 1 | 565 | 13 | 574 | 0.0 | 796 |
| MS.gene81225.t1 | AT3G07780 | 66.901 | 568 | 171 | 7 | 1 | 565 | 13 | 566 | 0.0 | 739 |
| MS.gene81225.t1 | AT3G07780 | 66.901 | 568 | 171 | 7 | 1 | 565 | 24 | 577 | 0.0 | 739 |
| MS.gene81225.t1 | AT3G07780 | 66.901 | 568 | 171 | 7 | 1 | 565 | 13 | 566 | 0.0 | 739 |
| MS.gene81225.t1 | AT3G63500 | 36.105 | 421 | 251 | 6 | 92 | 506 | 432 | 840 | 1.96e-78 | 265 |
| MS.gene81225.t1 | AT3G63500 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 1.89e-77 | 266 |
| MS.gene81225.t1 | AT3G63500 | 36.105 | 421 | 251 | 6 | 92 | 506 | 707 | 1115 | 1.89e-77 | 266 |
| MS.gene81225.t1 | AT1G14740 | 34.396 | 439 | 243 | 6 | 89 | 522 | 305 | 703 | 6.32e-73 | 247 |
Find 138 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTGAATTCCAGTATTTA+TGG | 0.176236 | 5.2:-81695782 | None:intergenic |
| CTAATGACTGCCACCCTTTC+CGG | 0.193878 | 5.2:+81697309 | MS.gene81225:CDS |
| GTAAAGGAGATCATGGATTT+TGG | 0.213920 | 5.2:-81697258 | None:intergenic |
| TGCCATAAATACTGGAATTC+AGG | 0.237888 | 5.2:+81695780 | MS.gene81225:CDS |
| CTTGAGTTCTTCTGCTTCTC+TGG | 0.253475 | 5.2:-81696934 | None:intergenic |
| GGCACTGATCCACTCTTTAC+AGG | 0.283245 | 5.2:-81696084 | None:intergenic |
| CATCAGCTGGAAGCTGGTTT+TGG | 0.287912 | 5.2:-81695885 | None:intergenic |
| ATCTTTGTCTCTTGTTTCTT+CGG | 0.301294 | 5.2:+81695330 | MS.gene81225:CDS |
| TTAGATTGACTGTCTGCTTT+GGG | 0.315236 | 5.2:-81697290 | None:intergenic |
| TCTACATTATCCAGGCTCTT+TGG | 0.326244 | 5.2:-81696750 | None:intergenic |
| ATCCTTGTTGCCATAAATAC+TGG | 0.341420 | 5.2:+81695772 | MS.gene81225:CDS |
| CTTCTGTTTCAAATAGTTGC+TGG | 0.354580 | 5.2:-81697126 | None:intergenic |
| TCCCTCCACGACAGCAATCC+CGG | 0.370544 | 5.2:+81695290 | MS.gene81225:CDS |
| ATCGTGGGATGAACCTCTTT+TGG | 0.374814 | 5.2:+81696265 | MS.gene81225:CDS |
| ATTAGATTGACTGTCTGCTT+TGG | 0.379288 | 5.2:-81697291 | None:intergenic |
| TGGCCTCATTAGCCTTCAAT+TGG | 0.386901 | 5.2:-81697037 | None:intergenic |
| GAGCCTCTCAGCCTCTCGTT+TGG | 0.409388 | 5.2:-81697057 | None:intergenic |
| TGCGGACAGAATCAGTCTTC+AGG | 0.422728 | 5.2:+81695534 | MS.gene81225:CDS |
| GACATTGATTCGAGCTCATC+GGG | 0.423325 | 5.2:+81695738 | MS.gene81225:CDS |
| GTATGAGAAAATCAAATTGC+AGG | 0.425425 | 5.2:+81697181 | MS.gene81225:CDS |
| TTTGTTAGTAGGATCTTTCA+TGG | 0.429043 | 5.2:+81696231 | MS.gene81225:CDS |
| AATAGCATCAGCAGTAGGCC+AGG | 0.431940 | 5.2:-81695437 | None:intergenic |
| GATGTGATTTGTGTTCTCAT+TGG | 0.433032 | 5.2:+81696013 | MS.gene81225:CDS |
| CACCTGAAAACCATTTCACT+TGG | 0.434640 | 5.2:-81696105 | None:intergenic |
| GGCTGATATGTTCCAATTGA+AGG | 0.436823 | 5.2:+81697025 | MS.gene81225:CDS |
| CACTTTCAGTAGGTGATTCA+CGG | 0.453441 | 5.2:-81695399 | None:intergenic |
| ATACTCATCACGGGTTTGTC+CGG | 0.455908 | 5.2:-81697328 | None:intergenic |
| TGGATCAGTGCCAAGTGAAA+TGG | 0.456270 | 5.2:+81696095 | MS.gene81225:CDS |
| TCTTGCGAAGTCTGATAAAT+CGG | 0.461104 | 5.2:+81697091 | MS.gene81225:CDS |
| CCCGGGATTGCTGTCGTGGA+GGG | 0.462782 | 5.2:-81695291 | None:intergenic |
| GCCATAAATACTGGAATTCA+GGG | 0.463071 | 5.2:+81695781 | MS.gene81225:CDS |
| GATCGTCACACTTCCAAAAG+AGG | 0.472222 | 5.2:-81696278 | None:intergenic |
| TGGAAGGTTGATTGCTCCAC+AGG | 0.475183 | 5.2:+81696776 | MS.gene81225:CDS |
| TGGAAGCTAAAGCAGCATGC+AGG | 0.476217 | 5.2:+81696328 | MS.gene81225:CDS |
| TCCAACATTGTGCACCATCA+TGG | 0.480513 | 5.2:+81696178 | MS.gene81225:CDS |
| GGCCATTGTAAAGGAGATCA+TGG | 0.483195 | 5.2:-81697265 | None:intergenic |
| TTCCACTTTCTACATTATCC+AGG | 0.485340 | 5.2:-81696758 | None:intergenic |
| CCAACCCGGGATTGCTGTCG+TGG | 0.486754 | 5.2:-81695295 | None:intergenic |
| CAGAATTGCTGAAGTGGTGC+AGG | 0.488827 | 5.2:+81696809 | MS.gene81225:CDS |
| CGACGAATAACTGACTGATC+AGG | 0.490361 | 5.2:-81695502 | None:intergenic |
| CTTTGGGAGGGCCATTGTAA+AGG | 0.496266 | 5.2:-81697274 | None:intergenic |
| GATTGACTGTCTGCTTTGGG+AGG | 0.497767 | 5.2:-81697287 | None:intergenic |
| ATTGCAGAAGCCACTGTTGT+TGG | 0.498959 | 5.2:-81695929 | None:intergenic |
| GGACTTCGAGTTATCCTTGA+GGG | 0.499090 | 5.2:+81695637 | MS.gene81225:CDS |
| GCTTGTCTCCTGAGGATCCT+AGG | 0.499181 | 5.2:+81695359 | MS.gene81225:CDS |
| AACAATCATCAGCTGGAAGC+TGG | 0.500810 | 5.2:-81695891 | None:intergenic |
| GCAGGAGGCTATACGAAAGA+TGG | 0.504278 | 5.2:+81696827 | MS.gene81225:CDS |
| CCTAGACTCTCCAAAGAGCC+TGG | 0.507697 | 5.2:+81696740 | MS.gene81225:CDS |
| ACTTCGCAAGAGCAATCCTC+TGG | 0.508330 | 5.2:-81697079 | None:intergenic |
| TGCTATTGCTGCGAAGAAGA+TGG | 0.511035 | 5.2:+81695453 | MS.gene81225:CDS |
| GCAAATAAGTTGCTCCCGTA+TGG | 0.512263 | 5.2:-81696052 | None:intergenic |
| TCAGTCTTCAGGACATTGCT+CGG | 0.513007 | 5.2:+81695545 | MS.gene81225:CDS |
| GGACTTCAGAACTGTTAGGC+TGG | 0.513412 | 5.2:+81696142 | MS.gene81225:CDS |
| CTCACACAGATTGTGCCATA+CGG | 0.513413 | 5.2:+81696037 | MS.gene81225:CDS |
| CCCTCCACGACAGCAATCCC+GGG | 0.515207 | 5.2:+81695291 | MS.gene81225:CDS |
| GTAAATACATGCCGTTGGAT+TGG | 0.515809 | 5.2:+81695991 | MS.gene81225:CDS |
| GAAGGCTCGCTTAGCTGTTG+AGG | 0.516614 | 5.2:+81696884 | MS.gene81225:CDS |
| ATCACGGGTTTGTCCGGAAA+GGG | 0.518375 | 5.2:-81697322 | None:intergenic |
| GAGTTTGACCTAGGATCCTC+AGG | 0.521068 | 5.2:-81695367 | None:intergenic |
| GTTCCAATTGAAGGCTAATG+AGG | 0.521411 | 5.2:+81697034 | MS.gene81225:CDS |
| TTGAAGTAAATACATGCCGT+TGG | 0.522716 | 5.2:+81695986 | MS.gene81225:CDS |
| CCCATGATGGTGCACAATGT+TGG | 0.522804 | 5.2:-81696179 | None:intergenic |
| GACTTCAGAACTGTTAGGCT+GGG | 0.527791 | 5.2:+81696143 | MS.gene81225:CDS |
| GGCTGCGACAGACTAATGTT+AGG | 0.528186 | 5.2:-81695814 | None:intergenic |
| ATTGACTGTCTGCTTTGGGA+GGG | 0.528716 | 5.2:-81697286 | None:intergenic |
| AGAAGCAGAAGAACTCAAGA+TGG | 0.529192 | 5.2:+81696938 | MS.gene81225:CDS |
| ACGGGAGCAACTTATTTGCA+TGG | 0.531202 | 5.2:+81696056 | MS.gene81225:CDS |
| AGACATTGATTCGAGCTCAT+CGG | 0.534133 | 5.2:+81695737 | MS.gene81225:CDS |
| ATGAGCTCGAATCAATGTCT+TGG | 0.537389 | 5.2:-81695734 | None:intergenic |
| AGCCTGGATAATGTAGAAAG+TGG | 0.539924 | 5.2:+81696756 | MS.gene81225:CDS |
| GTTATCCTTGAGGGAGGGAA+TGG | 0.544054 | 5.2:+81695646 | MS.gene81225:CDS |
| TTGGAAGTGTGACGATCTCA+AGG | 0.544756 | 5.2:+81696284 | MS.gene81225:CDS |
| CCAACATTGTGCACCATCAT+GGG | 0.546323 | 5.2:+81696179 | MS.gene81225:CDS |
| CGACAGCAATCCCGGGTTGG+AGG | 0.547481 | 5.2:+81695298 | MS.gene81225:CDS |
| TGTTTGCAGTCCTCCAACCC+GGG | 0.548493 | 5.2:-81695308 | None:intergenic |
| CAGTCTTCAGGACATTGCTC+GGG | 0.548827 | 5.2:+81695546 | MS.gene81225:CDS |
| ATTCTGTTGCATGCCTCCTG+TGG | 0.548889 | 5.2:-81696792 | None:intergenic |
| CCAGGCTCTTTGGAGAGTCT+AGG | 0.550287 | 5.2:-81696740 | None:intergenic |
| ACCCGGGATTGCTGTCGTGG+AGG | 0.553588 | 5.2:-81695292 | None:intergenic |
| AAAATCAAGCTCCCTCATCA+AGG | 0.557639 | 5.2:-81696211 | None:intergenic |
| TCACAAGAACAATCATCAGC+TGG | 0.558649 | 5.2:-81695898 | None:intergenic |
| CGGGAGCAACTTATTTGCAT+GGG | 0.558837 | 5.2:+81696057 | MS.gene81225:CDS |
| ACAGAAGTTAAGTGAGGCTG+AGG | 0.558933 | 5.2:+81697142 | MS.gene81225:CDS |
| GGAAGCTAAAGCAGCATGCA+GGG | 0.560687 | 5.2:+81696329 | MS.gene81225:CDS |
| GCTGCGAAGAAGATGGAGAA+TGG | 0.561971 | 5.2:+81695460 | MS.gene81225:CDS |
| TCACACAGATTGTGCCATAC+GGG | 0.562732 | 5.2:+81696038 | MS.gene81225:CDS |
| TCAGGTGTCAATCATGCAGT+AGG | 0.562912 | 5.2:+81696121 | MS.gene81225:CDS |
| ATGTTTGCAGTCCTCCAACC+CGG | 0.569198 | 5.2:-81695309 | None:intergenic |
| GAATACATCAGCATTGAAGA+GGG | 0.569622 | 5.2:-81697236 | None:intergenic |
| ATTGTGCACCATCATGGGAT+GGG | 0.570954 | 5.2:+81696184 | MS.gene81225:CDS |
| CTAGAACTAGCACTTTCAGT+AGG | 0.578007 | 5.2:-81695409 | None:intergenic |
| CATTGTGCACCATCATGGGA+TGG | 0.578553 | 5.2:+81696183 | MS.gene81225:CDS |
| AGTAGGACTTCAGAACTGTT+AGG | 0.579004 | 5.2:+81696138 | MS.gene81225:CDS |
| GGACATTGCTCGGGAAAGAG+TGG | 0.584255 | 5.2:+81695555 | MS.gene81225:CDS |
| GGAATACATCAGCATTGAAG+AGG | 0.585828 | 5.2:-81697237 | None:intergenic |
| CAATTGGAACATATCAGCCT+CGG | 0.587516 | 5.2:-81697021 | None:intergenic |
| GCATGCCATTCCCTCCCTCA+AGG | 0.588171 | 5.2:-81695651 | None:intergenic |
| CAGAAGAACTCAAGATGGAG+AGG | 0.588684 | 5.2:+81696943 | MS.gene81225:CDS |
| CATCACGGGTTTGTCCGGAA+AGG | 0.588989 | 5.2:-81697323 | None:intergenic |
| TTGTGCACCATCATGGGATG+GGG | 0.590598 | 5.2:+81696185 | MS.gene81225:CDS |
| AAGGAATCCCCATCCCATGA+TGG | 0.593870 | 5.2:-81696192 | None:intergenic |
| TGGATAATGTAGAAAGTGGA+AGG | 0.594481 | 5.2:+81696760 | MS.gene81225:CDS |
| GAAGATGAGAATGTTCAAGA+AGG | 0.594556 | 5.2:+81696866 | MS.gene81225:CDS |
| ATGGTAGTAAAGACCATCGT+GGG | 0.598320 | 5.2:+81696250 | MS.gene81225:CDS |
| GAGAGGCTGAGAGGCTCCAG+AGG | 0.598779 | 5.2:+81697063 | MS.gene81225:CDS |
| CCACGACAGCAATCCCGGGT+TGG | 0.602524 | 5.2:+81695295 | MS.gene81225:CDS |
| GGATCCTCGCTTGTCTCCTG+AGG | 0.602741 | 5.2:+81695351 | MS.gene81225:CDS |
| TTCCAGTATTTATGGCAACA+AGG | 0.603589 | 5.2:-81695774 | None:intergenic |
| AGAAATATCTCAATCAGCGA+TGG | 0.603706 | 5.2:-81695835 | None:intergenic |
| ATGCAACAGAATTGCTGAAG+TGG | 0.604458 | 5.2:+81696803 | MS.gene81225:CDS |
| ATCCATGATCTCCTTTACAA+TGG | 0.611502 | 5.2:+81697263 | MS.gene81225:CDS |
| CTTCGAGTTATCCTTGAGGG+AGG | 0.614388 | 5.2:+81695640 | MS.gene81225:CDS |
| TTCGAGTTATCCTTGAGGGA+GGG | 0.615596 | 5.2:+81695641 | MS.gene81225:CDS |
| GGCTAATGAGGCCAAACGAG+AGG | 0.618483 | 5.2:+81697046 | MS.gene81225:CDS |
| AATTGCTGAAGTGGTGCAGG+AGG | 0.618880 | 5.2:+81696812 | MS.gene81225:CDS |
| AGGTTATCAGAGTTTGACCT+AGG | 0.619181 | 5.2:-81695376 | None:intergenic |
| TATTCGTCGTGTTTCTAGTG+CGG | 0.628975 | 5.2:+81695516 | MS.gene81225:CDS |
| ACGGGTTTGTCCGGAAAGGG+TGG | 0.629535 | 5.2:-81697319 | None:intergenic |
| GTGCTAGTTCTAGAGAAACC+TGG | 0.630706 | 5.2:+81695419 | MS.gene81225:CDS |
| TTTGAAACAGAAGTTAAGTG+AGG | 0.634933 | 5.2:+81697136 | MS.gene81225:CDS |
| GCAGCAATAGCATCAGCAGT+AGG | 0.640719 | 5.2:-81695442 | None:intergenic |
| TGATCGTGAACTAGCAGACA+AGG | 0.644648 | 5.2:+81696911 | MS.gene81225:CDS |
| ACAAATCACATCCAATCCAA+CGG | 0.645811 | 5.2:-81696002 | None:intergenic |
| GGATGGGGATTCCTTGATGA+GGG | 0.648889 | 5.2:+81696200 | MS.gene81225:CDS |
| GGGATGGGGATTCCTTGATG+AGG | 0.651572 | 5.2:+81696199 | MS.gene81225:CDS |
| AGGCCAAACGAGAGGCTGAG+AGG | 0.658904 | 5.2:+81697054 | MS.gene81225:CDS |
| AAGGTTGATTGCTCCACAGG+AGG | 0.659574 | 5.2:+81696779 | MS.gene81225:CDS |
| ATGGGTCCTCCTGTAAAGAG+TGG | 0.666155 | 5.2:+81696075 | MS.gene81225:CDS |
| TCTCGCTTATCGCAGAGCAG+TGG | 0.671798 | 5.2:+81697209 | MS.gene81225:CDS |
| ACTGATCCACTCTTTACAGG+AGG | 0.681348 | 5.2:-81696081 | None:intergenic |
| CATGGTAGTAAAGACCATCG+TGG | 0.686464 | 5.2:+81696249 | MS.gene81225:CDS |
| AAGAACTAGAGAGAATTGTG+AGG | 0.696370 | 5.2:+81696988 | MS.gene81225:CDS |
| GAAACATGCACCAACAACAG+TGG | 0.702295 | 5.2:+81695919 | MS.gene81225:CDS |
| TGGACTTCGAGTTATCCTTG+AGG | 0.704359 | 5.2:+81695636 | MS.gene81225:CDS |
| GGATCCTCAGGAGACAAGCG+AGG | 0.706361 | 5.2:-81695355 | None:intergenic |
| AAAAGAGGTTCATCCCACGA+TGG | 0.725729 | 5.2:-81696263 | None:intergenic |
| AATACATCAGCATTGAAGAG+GGG | 0.734552 | 5.2:-81697235 | None:intergenic |
| TTTCAGTAGGTGATTCACGG+AGG | 0.740333 | 5.2:-81695396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTAAAAAAACTAAATT+AGG | + | chr5.2:81696502-81696521 | MS.gene81225:intron | 10.0% |
| !! | AAAACTGAAAAGTAGAAAAA+TGG | + | chr5.2:81696308-81696327 | MS.gene81225:CDS | 20.0% |
| !! | GAATGAGGATAAATAAATAA+AGG | - | chr5.2:81696688-81696707 | None:intergenic | 20.0% |
| !!! | ATTCGTATGTGTTTAAAATT+GGG | - | chr5.2:81696582-81696601 | None:intergenic | 20.0% |
| !!! | TATTCGTATGTGTTTAAAAT+TGG | - | chr5.2:81696583-81696602 | None:intergenic | 20.0% |
| CTCACTTTCTATATCACATT+TGG | + | chr5.2:81696458-81696477 | MS.gene81225:intron | 30.0% | |
| GTATGAGAAAATCAAATTGC+AGG | + | chr5.2:81697181-81697200 | MS.gene81225:CDS | 30.0% | |
| TTTGGTTATGTCTGAACAAA+TGG | + | chr5.2:81696476-81696495 | MS.gene81225:intron | 30.0% | |
| TTTGTTAGTAGGATCTTTCA+TGG | + | chr5.2:81696231-81696250 | MS.gene81225:CDS | 30.0% | |
| ! | ATCTTTGTCTCTTGTTTCTT+CGG | + | chr5.2:81695330-81695349 | MS.gene81225:CDS | 30.0% |
| ! | TATCTGCATTGACATAATTG+TGG | + | chr5.2:81696414-81696433 | MS.gene81225:intron | 30.0% |
| ! | TTTGAAACAGAAGTTAAGTG+AGG | + | chr5.2:81697136-81697155 | MS.gene81225:CDS | 30.0% |
| !! | GAAAAGCATTTGTTAGAATG+AGG | - | chr5.2:81696703-81696722 | None:intergenic | 30.0% |
| !! | GCAATATTGACTGTTTTTCA+AGG | + | chr5.2:81696351-81696370 | MS.gene81225:CDS | 30.0% |
| AAGAACTAGAGAGAATTGTG+AGG | + | chr5.2:81696988-81697007 | MS.gene81225:CDS | 35.0% | |
| ACAAATCACATCCAATCCAA+CGG | - | chr5.2:81696005-81696024 | None:intergenic | 35.0% | |
| AGAAATATCTCAATCAGCGA+TGG | - | chr5.2:81695838-81695857 | None:intergenic | 35.0% | |
| ATCCATGATCTCCTTTACAA+TGG | + | chr5.2:81697263-81697282 | MS.gene81225:CDS | 35.0% | |
| ATCCTTGTTGCCATAAATAC+TGG | + | chr5.2:81695772-81695791 | MS.gene81225:CDS | 35.0% | |
| ATTAGATTGACTGTCTGCTT+TGG | - | chr5.2:81697294-81697313 | None:intergenic | 35.0% | |
| CTAAAAATTCACCAGGTAGA+CGG | - | chr5.2:81695603-81695622 | None:intergenic | 35.0% | |
| CTTCTGTTTCAAATAGTTGC+TGG | - | chr5.2:81697129-81697148 | None:intergenic | 35.0% | |
| GAAGATGAGAATGTTCAAGA+AGG | + | chr5.2:81696866-81696885 | MS.gene81225:CDS | 35.0% | |
| GCCATAAATACTGGAATTCA+GGG | + | chr5.2:81695781-81695800 | MS.gene81225:CDS | 35.0% | |
| TCCCTGAATTCCAGTATTTA+TGG | - | chr5.2:81695785-81695804 | None:intergenic | 35.0% | |
| TCTTGCGAAGTCTGATAAAT+CGG | + | chr5.2:81697091-81697110 | MS.gene81225:CDS | 35.0% | |
| TGCCATAAATACTGGAATTC+AGG | + | chr5.2:81695780-81695799 | MS.gene81225:CDS | 35.0% | |
| TGGATAATGTAGAAAGTGGA+AGG | + | chr5.2:81696760-81696779 | MS.gene81225:CDS | 35.0% | |
| TTAGATTGACTGTCTGCTTT+GGG | - | chr5.2:81697293-81697312 | None:intergenic | 35.0% | |
| TTCCACTTTCTACATTATCC+AGG | - | chr5.2:81696761-81696780 | None:intergenic | 35.0% | |
| TTCCAGTATTTATGGCAACA+AGG | - | chr5.2:81695777-81695796 | None:intergenic | 35.0% | |
| TTGAAGTAAATACATGCCGT+TGG | + | chr5.2:81695986-81696005 | MS.gene81225:CDS | 35.0% | |
| ! | AATACATCAGCATTGAAGAG+GGG | - | chr5.2:81697238-81697257 | None:intergenic | 35.0% |
| ! | GAATACATCAGCATTGAAGA+GGG | - | chr5.2:81697239-81697258 | None:intergenic | 35.0% |
| ! | GATGTGATTTGTGTTCTCAT+TGG | + | chr5.2:81696013-81696032 | MS.gene81225:CDS | 35.0% |
| ! | GTAAAGGAGATCATGGATTT+TGG | - | chr5.2:81697261-81697280 | None:intergenic | 35.0% |
| !! | TCTACCTGGTGAATTTTTAG+AGG | + | chr5.2:81695603-81695622 | MS.gene81225:CDS | 35.0% |
| !! | TTTTTAGAGGAGCTGAAAAC+TGG | + | chr5.2:81695616-81695635 | MS.gene81225:CDS | 35.0% |
| AAAATCAAGCTCCCTCATCA+AGG | - | chr5.2:81696214-81696233 | None:intergenic | 40.0% | |
| AGAAGCAGAAGAACTCAAGA+TGG | + | chr5.2:81696938-81696957 | MS.gene81225:CDS | 40.0% | |
| AGCCTGGATAATGTAGAAAG+TGG | + | chr5.2:81696756-81696775 | MS.gene81225:CDS | 40.0% | |
| AGGTTATCAGAGTTTGACCT+AGG | - | chr5.2:81695379-81695398 | None:intergenic | 40.0% | |
| AGTAGGACTTCAGAACTGTT+AGG | + | chr5.2:81696138-81696157 | MS.gene81225:CDS | 40.0% | |
| ATGAGCTCGAATCAATGTCT+TGG | - | chr5.2:81695737-81695756 | None:intergenic | 40.0% | |
| ATGCAACAGAATTGCTGAAG+TGG | + | chr5.2:81696803-81696822 | MS.gene81225:CDS | 40.0% | |
| ATGGTAGTAAAGACCATCGT+GGG | + | chr5.2:81696250-81696269 | MS.gene81225:CDS | 40.0% | |
| CAATTGGAACATATCAGCCT+CGG | - | chr5.2:81697024-81697043 | None:intergenic | 40.0% | |
| CACCTGAAAACCATTTCACT+TGG | - | chr5.2:81696108-81696127 | None:intergenic | 40.0% | |
| CACTTTCAGTAGGTGATTCA+CGG | - | chr5.2:81695402-81695421 | None:intergenic | 40.0% | |
| CTAGAACTAGCACTTTCAGT+AGG | - | chr5.2:81695412-81695431 | None:intergenic | 40.0% | |
| GGCTGATATGTTCCAATTGA+AGG | + | chr5.2:81697025-81697044 | MS.gene81225:CDS | 40.0% | |
| GTAAATACATGCCGTTGGAT+TGG | + | chr5.2:81695991-81696010 | MS.gene81225:CDS | 40.0% | |
| GTTCCAATTGAAGGCTAATG+AGG | + | chr5.2:81697034-81697053 | MS.gene81225:CDS | 40.0% | |
| TCACAAGAACAATCATCAGC+TGG | - | chr5.2:81695901-81695920 | None:intergenic | 40.0% | |
| TCTACATTATCCAGGCTCTT+TGG | - | chr5.2:81696753-81696772 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTAAAAATTCACC+AGG | - | chr5.2:81695610-81695629 | None:intergenic | 40.0% |
| ! | GGAATACATCAGCATTGAAG+AGG | - | chr5.2:81697240-81697259 | None:intergenic | 40.0% |
| ! | GGGAGCTTGATTTTGTTAGT+AGG | + | chr5.2:81696220-81696239 | MS.gene81225:CDS | 40.0% |
| ! | TGCCAAGTGAAATGGTTTTC+AGG | + | chr5.2:81696103-81696122 | MS.gene81225:CDS | 40.0% |
| !! | AGACATTGATTCGAGCTCAT+CGG | + | chr5.2:81695737-81695756 | MS.gene81225:CDS | 40.0% |
| !! | GGTTTTGGCAAGCTATGTTT+CGG | - | chr5.2:81695873-81695892 | None:intergenic | 40.0% |
| !! | TATTCGTCGTGTTTCTAGTG+CGG | + | chr5.2:81695516-81695535 | MS.gene81225:CDS | 40.0% |
| AAAAGAGGTTCATCCCACGA+TGG | - | chr5.2:81696266-81696285 | None:intergenic | 45.0% | |
| AAAGGCAACAGCAGCATATC+TGG | - | chr5.2:81696670-81696689 | None:intergenic | 45.0% | |
| AACAATCATCAGCTGGAAGC+TGG | - | chr5.2:81695894-81695913 | None:intergenic | 45.0% | |
| ACAGAAGTTAAGTGAGGCTG+AGG | + | chr5.2:81697142-81697161 | MS.gene81225:CDS | 45.0% | |
| ACGGGAGCAACTTATTTGCA+TGG | + | chr5.2:81696056-81696075 | MS.gene81225:CDS | 45.0% | |
| ACTGATCCACTCTTTACAGG+AGG | - | chr5.2:81696084-81696103 | None:intergenic | 45.0% | |
| ATTGCAGAAGCCACTGTTGT+TGG | - | chr5.2:81695932-81695951 | None:intergenic | 45.0% | |
| ATTGTGCACCATCATGGGAT+GGG | + | chr5.2:81696184-81696203 | MS.gene81225:CDS | 45.0% | |
| CAGAAGAACTCAAGATGGAG+AGG | + | chr5.2:81696943-81696962 | MS.gene81225:CDS | 45.0% | |
| CATGGTAGTAAAGACCATCG+TGG | + | chr5.2:81696249-81696268 | MS.gene81225:CDS | 45.0% | |
| CCAACATTGTGCACCATCAT+GGG | + | chr5.2:81696179-81696198 | MS.gene81225:CDS | 45.0% | |
| CGACGAATAACTGACTGATC+AGG | - | chr5.2:81695505-81695524 | None:intergenic | 45.0% | |
| CGGGAGCAACTTATTTGCAT+GGG | + | chr5.2:81696057-81696076 | MS.gene81225:CDS | 45.0% | |
| CTAGGTCAAGCTCTTCATGT+AGG | - | chr5.2:81696725-81696744 | None:intergenic | 45.0% | |
| CTCACACAGATTGTGCCATA+CGG | + | chr5.2:81696037-81696056 | MS.gene81225:CDS | 45.0% | |
| CTTGAGTTCTTCTGCTTCTC+TGG | - | chr5.2:81696937-81696956 | None:intergenic | 45.0% | |
| GAAAAAATGCTCCGTCTACC+TGG | + | chr5.2:81695589-81695608 | MS.gene81225:CDS | 45.0% | |
| GAAACATGCACCAACAACAG+TGG | + | chr5.2:81695919-81695938 | MS.gene81225:CDS | 45.0% | |
| GACTTCAGAACTGTTAGGCT+GGG | + | chr5.2:81696143-81696162 | MS.gene81225:CDS | 45.0% | |
| GATCGTCACACTTCCAAAAG+AGG | - | chr5.2:81696281-81696300 | None:intergenic | 45.0% | |
| GCAAATAAGTTGCTCCCGTA+TGG | - | chr5.2:81696055-81696074 | None:intergenic | 45.0% | |
| GGCCATTGTAAAGGAGATCA+TGG | - | chr5.2:81697268-81697287 | None:intergenic | 45.0% | |
| TCACACAGATTGTGCCATAC+GGG | + | chr5.2:81696038-81696057 | MS.gene81225:CDS | 45.0% | |
| TCAGGTGTCAATCATGCAGT+AGG | + | chr5.2:81696121-81696140 | MS.gene81225:CDS | 45.0% | |
| TCAGTCTTCAGGACATTGCT+CGG | + | chr5.2:81695545-81695564 | MS.gene81225:CDS | 45.0% | |
| TCCAACATTGTGCACCATCA+TGG | + | chr5.2:81696178-81696197 | MS.gene81225:CDS | 45.0% | |
| TGATCGTGAACTAGCAGACA+AGG | + | chr5.2:81696911-81696930 | MS.gene81225:CDS | 45.0% | |
| TGCTATTGCTGCGAAGAAGA+TGG | + | chr5.2:81695453-81695472 | MS.gene81225:CDS | 45.0% | |
| TGGATCAGTGCCAAGTGAAA+TGG | + | chr5.2:81696095-81696114 | MS.gene81225:CDS | 45.0% | |
| TGTGAGGCTTAAAAATGCCG+AGG | + | chr5.2:81697004-81697023 | MS.gene81225:CDS | 45.0% | |
| TTTCAGTAGGTGATTCACGG+AGG | - | chr5.2:81695399-81695418 | None:intergenic | 45.0% | |
| ! | ATCGTGGGATGAACCTCTTT+TGG | + | chr5.2:81696265-81696284 | MS.gene81225:CDS | 45.0% |
| ! | GGACTTCGAGTTATCCTTGA+GGG | + | chr5.2:81695637-81695656 | MS.gene81225:CDS | 45.0% |
| ! | TGGACTTCGAGTTATCCTTG+AGG | + | chr5.2:81695636-81695655 | MS.gene81225:CDS | 45.0% |
| ! | TTCGAGTTATCCTTGAGGGA+GGG | + | chr5.2:81695641-81695660 | MS.gene81225:CDS | 45.0% |
| ! | TTGGAAGTGTGACGATCTCA+AGG | + | chr5.2:81696284-81696303 | MS.gene81225:CDS | 45.0% |
| !! | ATTGACTGTCTGCTTTGGGA+GGG | - | chr5.2:81697289-81697308 | None:intergenic | 45.0% |
| !! | GACATTGATTCGAGCTCATC+GGG | + | chr5.2:81695738-81695757 | MS.gene81225:CDS | 45.0% |
| !! | GTGCTAGTTCTAGAGAAACC+TGG | + | chr5.2:81695419-81695438 | MS.gene81225:CDS | 45.0% |
| !! | TGGCCTCATTAGCCTTCAAT+TGG | - | chr5.2:81697040-81697059 | None:intergenic | 45.0% |
| AAGGAATCCCCATCCCATGA+TGG | - | chr5.2:81696195-81696214 | None:intergenic | 50.0% | |
| AATAGCATCAGCAGTAGGCC+AGG | - | chr5.2:81695440-81695459 | None:intergenic | 50.0% | |
| AATTGCTGAAGTGGTGCAGG+AGG | + | chr5.2:81696812-81696831 | MS.gene81225:CDS | 50.0% | |
| ACTTCGCAAGAGCAATCCTC+TGG | - | chr5.2:81697082-81697101 | None:intergenic | 50.0% | |
| ATGGGTCCTCCTGTAAAGAG+TGG | + | chr5.2:81696075-81696094 | MS.gene81225:CDS | 50.0% | |
| ATGTTTGCAGTCCTCCAACC+CGG | - | chr5.2:81695312-81695331 | None:intergenic | 50.0% | |
| ATTCTGTTGCATGCCTCCTG+TGG | - | chr5.2:81696795-81696814 | None:intergenic | 50.0% | |
| CAGAATTGCTGAAGTGGTGC+AGG | + | chr5.2:81696809-81696828 | MS.gene81225:CDS | 50.0% | |
| CAGTCTTCAGGACATTGCTC+GGG | + | chr5.2:81695546-81695565 | MS.gene81225:CDS | 50.0% | |
| CATTGTGCACCATCATGGGA+TGG | + | chr5.2:81696183-81696202 | MS.gene81225:CDS | 50.0% | |
| CTAATGACTGCCACCCTTTC+CGG | + | chr5.2:81697309-81697328 | MS.gene81225:CDS | 50.0% | |
| GAGTTTGACCTAGGATCCTC+AGG | - | chr5.2:81695370-81695389 | None:intergenic | 50.0% | |
| GCAGCAATAGCATCAGCAGT+AGG | - | chr5.2:81695445-81695464 | None:intergenic | 50.0% | |
| GCAGGAGGCTATACGAAAGA+TGG | + | chr5.2:81696827-81696846 | MS.gene81225:CDS | 50.0% | |
| GCTGCGAAGAAGATGGAGAA+TGG | + | chr5.2:81695460-81695479 | MS.gene81225:CDS | 50.0% | |
| GGAAGCTAAAGCAGCATGCA+GGG | + | chr5.2:81696329-81696348 | MS.gene81225:CDS | 50.0% | |
| GGACTTCAGAACTGTTAGGC+TGG | + | chr5.2:81696142-81696161 | MS.gene81225:CDS | 50.0% | |
| GGATGGGGATTCCTTGATGA+GGG | + | chr5.2:81696200-81696219 | MS.gene81225:CDS | 50.0% | |
| GGCTGCGACAGACTAATGTT+AGG | - | chr5.2:81695817-81695836 | None:intergenic | 50.0% | |
| GTTATCCTTGAGGGAGGGAA+TGG | + | chr5.2:81695646-81695665 | MS.gene81225:CDS | 50.0% | |
| TGCGGACAGAATCAGTCTTC+AGG | + | chr5.2:81695534-81695553 | MS.gene81225:CDS | 50.0% | |
| TGGAAGCTAAAGCAGCATGC+AGG | + | chr5.2:81696328-81696347 | MS.gene81225:CDS | 50.0% | |
| TTGTGCACCATCATGGGATG+GGG | + | chr5.2:81696185-81696204 | MS.gene81225:CDS | 50.0% | |
| ! | AAGGTTGATTGCTCCACAGG+AGG | + | chr5.2:81696779-81696798 | MS.gene81225:CDS | 50.0% |
| ! | CCCATGATGGTGCACAATGT+TGG | - | chr5.2:81696182-81696201 | None:intergenic | 50.0% |
| ! | CTTCGAGTTATCCTTGAGGG+AGG | + | chr5.2:81695640-81695659 | MS.gene81225:CDS | 50.0% |
| ! | CTTTGGGAGGGCCATTGTAA+AGG | - | chr5.2:81697277-81697296 | None:intergenic | 50.0% |
| ! | GATTGACTGTCTGCTTTGGG+AGG | - | chr5.2:81697290-81697309 | None:intergenic | 50.0% |
| ! | TGGAAGGTTGATTGCTCCAC+AGG | + | chr5.2:81696776-81696795 | MS.gene81225:CDS | 50.0% |
| !! | CATCAGCTGGAAGCTGGTTT+TGG | - | chr5.2:81695888-81695907 | None:intergenic | 50.0% |
| !! | GGCACTGATCCACTCTTTAC+AGG | - | chr5.2:81696087-81696106 | None:intergenic | 50.0% |
| CCTAGACTCTCCAAAGAGCC+TGG | + | chr5.2:81696740-81696759 | MS.gene81225:CDS | 55.0% | |
| GAAGGCTCGCTTAGCTGTTG+AGG | + | chr5.2:81696884-81696903 | MS.gene81225:CDS | 55.0% | |
| GCTTGTCTCCTGAGGATCCT+AGG | + | chr5.2:81695359-81695378 | MS.gene81225:CDS | 55.0% | |
| GGACATTGCTCGGGAAAGAG+TGG | + | chr5.2:81695555-81695574 | MS.gene81225:CDS | 55.0% | |
| GGCTAATGAGGCCAAACGAG+AGG | + | chr5.2:81697046-81697065 | MS.gene81225:CDS | 55.0% | |
| GGGATGGGGATTCCTTGATG+AGG | + | chr5.2:81696199-81696218 | MS.gene81225:CDS | 55.0% | |
| TCTCGCTTATCGCAGAGCAG+TGG | + | chr5.2:81697209-81697228 | MS.gene81225:CDS | 55.0% | |
| TGTTTGCAGTCCTCCAACCC+GGG | - | chr5.2:81695311-81695330 | None:intergenic | 55.0% | |
| ! | CCAGGCTCTTTGGAGAGTCT+AGG | - | chr5.2:81696743-81696762 | None:intergenic | 55.0% |
| ACGGGTTTGTCCGGAAAGGG+TGG | - | chr5.2:81697322-81697341 | None:intergenic | 60.0% | |
| AGGCCAAACGAGAGGCTGAG+AGG | + | chr5.2:81697054-81697073 | MS.gene81225:CDS | 60.0% | |
| GAGCCTCTCAGCCTCTCGTT+TGG | - | chr5.2:81697060-81697079 | None:intergenic | 60.0% | |
| GCATGCCATTCCCTCCCTCA+AGG | - | chr5.2:81695654-81695673 | None:intergenic | 60.0% | |
| GGATCCTCAGGAGACAAGCG+AGG | - | chr5.2:81695358-81695377 | None:intergenic | 60.0% | |
| GGATCCTCGCTTGTCTCCTG+AGG | + | chr5.2:81695351-81695370 | MS.gene81225:CDS | 60.0% | |
| TCCCTCCACGACAGCAATCC+CGG | + | chr5.2:81695290-81695309 | MS.gene81225:CDS | 60.0% | |
| ACCCGGGATTGCTGTCGTGG+AGG | - | chr5.2:81695295-81695314 | None:intergenic | 65.0% | |
| CCAACCCGGGATTGCTGTCG+TGG | - | chr5.2:81695298-81695317 | None:intergenic | 65.0% | |
| CCACGACAGCAATCCCGGGT+TGG | + | chr5.2:81695295-81695314 | MS.gene81225:CDS | 65.0% | |
| CCCGGGATTGCTGTCGTGGA+GGG | - | chr5.2:81695294-81695313 | None:intergenic | 65.0% | |
| CCCTCCACGACAGCAATCCC+GGG | + | chr5.2:81695291-81695310 | MS.gene81225:CDS | 65.0% | |
| GAGAGGCTGAGAGGCTCCAG+AGG | + | chr5.2:81697063-81697082 | MS.gene81225:CDS | 65.0% | |
| ! | CGACAGCAATCCCGGGTTGG+AGG | + | chr5.2:81695298-81695317 | MS.gene81225:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 81695286 | 81697343 | 81695286 | ID=MS.gene81225 |
| chr5.2 | mRNA | 81695286 | 81697343 | 81695286 | ID=MS.gene81225.t1;Parent=MS.gene81225 |
| chr5.2 | exon | 81695286 | 81696372 | 81695286 | ID=MS.gene81225.t1.exon1;Parent=MS.gene81225.t1 |
| chr5.2 | CDS | 81695286 | 81696372 | 81695286 | ID=cds.MS.gene81225.t1;Parent=MS.gene81225.t1 |
| chr5.2 | exon | 81696733 | 81697343 | 81696733 | ID=MS.gene81225.t1.exon2;Parent=MS.gene81225.t1 |
| chr5.2 | CDS | 81696733 | 81697343 | 81696733 | ID=cds.MS.gene81225.t1;Parent=MS.gene81225.t1 |
| Gene Sequence |
| Protein sequence |
