Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020907.t1 | XP_003617979.1 | 98.6 | 370 | 5 | 0 | 1 | 370 | 73 | 442 | 1.60E-209 | 738.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020907.t1 | Q9SJ74 | 70.2 | 366 | 107 | 2 | 1 | 365 | 38 | 402 | 1.8e-153 | 543.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020907.t1 | G7K4W5 | 98.6 | 370 | 5 | 0 | 1 | 370 | 73 | 442 | 1.2e-209 | 738.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020907 | MS.gene012709 | PPI |
| MS.gene020907 | MS.gene95132 | PPI |
| MS.gene020907 | MS.gene96299 | PPI |
| MS.gene042118 | MS.gene020907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020907.t1 | MTR_5g097620 | 98.649 | 370 | 5 | 0 | 1 | 370 | 73 | 442 | 0.0 | 747 |
| MS.gene020907.t1 | MTR_8g009880 | 85.637 | 369 | 49 | 3 | 1 | 369 | 36 | 400 | 0.0 | 650 |
| MS.gene020907.t1 | MTR_4g133620 | 33.787 | 367 | 220 | 6 | 2 | 360 | 41 | 392 | 4.09e-64 | 209 |
| MS.gene020907.t1 | MTR_2g026080 | 33.604 | 369 | 220 | 9 | 2 | 362 | 45 | 396 | 1.57e-59 | 197 |
| MS.gene020907.t1 | MTR_7g051910 | 30.851 | 376 | 233 | 5 | 1 | 370 | 40 | 394 | 1.77e-59 | 197 |
| MS.gene020907.t1 | MTR_5g093520 | 35.143 | 350 | 202 | 11 | 3 | 342 | 54 | 388 | 4.00e-54 | 184 |
| MS.gene020907.t1 | MTR_3g058510 | 30.791 | 354 | 221 | 9 | 2 | 348 | 42 | 378 | 6.13e-51 | 174 |
| MS.gene020907.t1 | MTR_8g028075 | 30.041 | 243 | 157 | 6 | 102 | 339 | 319 | 553 | 9.14e-29 | 117 |
| MS.gene020907.t1 | MTR_7g117375 | 33.649 | 211 | 130 | 5 | 143 | 351 | 184 | 386 | 2.61e-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020907.t1 | AT2G04850 | 70.219 | 366 | 107 | 2 | 1 | 365 | 38 | 402 | 0.0 | 533 |
| MS.gene020907.t1 | AT3G25290 | 32.222 | 360 | 223 | 6 | 1 | 352 | 43 | 389 | 1.97e-68 | 221 |
| MS.gene020907.t1 | AT3G25290 | 32.222 | 360 | 223 | 6 | 1 | 352 | 43 | 389 | 1.97e-68 | 221 |
| MS.gene020907.t1 | AT4G12980 | 32.687 | 361 | 220 | 6 | 1 | 352 | 44 | 390 | 1.09e-66 | 216 |
| MS.gene020907.t1 | AT5G47530 | 32.703 | 370 | 223 | 7 | 2 | 367 | 43 | 390 | 1.41e-66 | 216 |
| MS.gene020907.t1 | AT4G17280 | 33.056 | 360 | 218 | 7 | 2 | 355 | 50 | 392 | 2.58e-59 | 197 |
| MS.gene020907.t1 | AT5G35735 | 33.702 | 362 | 212 | 11 | 12 | 369 | 55 | 392 | 3.28e-59 | 197 |
| MS.gene020907.t1 | AT3G59070 | 31.148 | 366 | 219 | 12 | 21 | 370 | 72 | 420 | 1.21e-46 | 165 |
| MS.gene020907.t1 | AT3G07570 | 28.803 | 309 | 199 | 9 | 33 | 340 | 79 | 367 | 8.81e-32 | 123 |
| MS.gene020907.t1 | AT3G61750 | 29.180 | 305 | 193 | 10 | 33 | 336 | 11 | 293 | 5.18e-28 | 112 |
| MS.gene020907.t1 | AT3G61750 | 29.180 | 305 | 193 | 10 | 33 | 336 | 88 | 370 | 2.89e-27 | 111 |
| MS.gene020907.t1 | AT5G48750 | 28.899 | 218 | 138 | 4 | 1 | 216 | 49 | 251 | 1.71e-24 | 101 |
| MS.gene020907.t1 | AT5G54830 | 28.571 | 189 | 112 | 6 | 161 | 343 | 670 | 841 | 5.70e-13 | 70.9 |
Find 111 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACTATTTGTCCTGTATT+TGG | 0.114722 | 5.4:+76782586 | None:intergenic |
| TTAGGGCTTTCTACTCTTAT+TGG | 0.174160 | 5.4:-76781797 | MS.gene020907:CDS |
| ATTCCAAACAAGGTGGATTT+TGG | 0.191207 | 5.4:+76782384 | None:intergenic |
| CAAATGTTTGGTTTCATTCT+TGG | 0.192480 | 5.4:-76782097 | MS.gene020907:CDS |
| CCAAATTGAGTTATTGTTTA+GGG | 0.198532 | 5.4:-76781814 | MS.gene020907:CDS |
| CTAAACTTGTTCGTAGTATT+TGG | 0.209570 | 5.4:+76781944 | None:intergenic |
| CCTTCTGGTTGGGTTGGATT+TGG | 0.240455 | 5.4:-76782667 | MS.gene020907:CDS |
| GGTACTTTCATTTCACCTTC+TGG | 0.252833 | 5.4:-76782682 | MS.gene020907:CDS |
| ATGAGGAAAGAGGGACTTAT+TGG | 0.256520 | 5.4:-76781710 | MS.gene020907:CDS |
| ACCTTAGAACTAATCTTCTT+TGG | 0.258541 | 5.4:-76782703 | MS.gene020907:CDS |
| GGTTACTCTTGTGTGGTTCT+TGG | 0.269844 | 5.4:-76781890 | MS.gene020907:CDS |
| CCCTAAACAATAACTCAATT+TGG | 0.277592 | 5.4:+76781814 | None:intergenic |
| TATTGGTGTTTCCATTGCTT+TGG | 0.291938 | 5.4:-76781780 | MS.gene020907:CDS |
| TTGCTTTGGAGGTCAATTCT+TGG | 0.293222 | 5.4:-76781766 | MS.gene020907:CDS |
| AGACTTTGGCATTGTTGTTT+AGG | 0.306216 | 5.4:-76781967 | MS.gene020907:CDS |
| AAACCAAAATCCACCTTGTT+TGG | 0.312634 | 5.4:-76782387 | MS.gene020907:CDS |
| GCCAAATTGAGTTATTGTTT+AGG | 0.317349 | 5.4:-76781815 | MS.gene020907:CDS |
| GAACTATTTGTCCTGTATTT+GGG | 0.317546 | 5.4:+76782587 | None:intergenic |
| ACCAAAGAAGATTAGTTCTA+AGG | 0.327439 | 5.4:+76782702 | None:intergenic |
| CAAATACTACGAACAAGTTT+AGG | 0.331418 | 5.4:-76781943 | MS.gene020907:CDS |
| CCTTGGAGCTTTGCAGACTT+TGG | 0.336139 | 5.4:-76781981 | MS.gene020907:CDS |
| TGCTTTGGAGGTCAATTCTT+GGG | 0.347626 | 5.4:-76781765 | MS.gene020907:CDS |
| GGAACCGTTGGGTTTGGTAT+TGG | 0.355093 | 5.4:-76782076 | MS.gene020907:CDS |
| TTTCATTTCACCTTCTGGTT+GGG | 0.360777 | 5.4:-76782677 | MS.gene020907:CDS |
| ATGACGCCGGGAGTGGAGTA+TGG | 0.367061 | 5.4:-76782037 | MS.gene020907:CDS |
| CGAACAAGTTTAGGAAGTAT+TGG | 0.369522 | 5.4:-76781934 | MS.gene020907:CDS |
| CACAAGAGTAACCAACAAAA+TGG | 0.369888 | 5.4:+76781900 | None:intergenic |
| CTTCGACACTTTCAAACATT+AGG | 0.375405 | 5.4:-76782151 | MS.gene020907:CDS |
| ATTTGTCCTGTATTTGGGTC+TGG | 0.375488 | 5.4:+76782592 | None:intergenic |
| TCTTCCTCTGCAGCCATGTA+TGG | 0.375881 | 5.4:-76782481 | MS.gene020907:CDS |
| ATTCTTGGAACCGTTGGGTT+TGG | 0.386831 | 5.4:-76782082 | MS.gene020907:CDS |
| CATGCAGGAATACAAATGTT+TGG | 0.389583 | 5.4:-76782109 | MS.gene020907:CDS |
| GGCTTTGTGAATGTGTTTCA+AGG | 0.390916 | 5.4:-76781869 | MS.gene020907:CDS |
| ATCCACCTTGTTTGGAATAG+AGG | 0.394891 | 5.4:-76782379 | MS.gene020907:CDS |
| TGTTCTAAATGCAGTCTCTT+GGG | 0.395962 | 5.4:-76782212 | MS.gene020907:CDS |
| ATTTCACCTTCTGGTTGGGT+TGG | 0.397941 | 5.4:-76782673 | MS.gene020907:CDS |
| ATTCGACTCGAGTTTGAGTT+TGG | 0.399789 | 5.4:+76782411 | None:intergenic |
| GATAGATCAATTGATGTTGT+TGG | 0.401706 | 5.4:+76782322 | None:intergenic |
| TGGTGTTTCCATTGCTTTGG+AGG | 0.402874 | 5.4:-76781777 | MS.gene020907:CDS |
| GGTTTCATTCTTGGAACCGT+TGG | 0.404965 | 5.4:-76782088 | MS.gene020907:CDS |
| AGTTTGGCGTAGATTTGAAT+AGG | 0.405047 | 5.4:+76782427 | None:intergenic |
| AATAGAGGTCTTTATGTTCA+AGG | 0.414486 | 5.4:-76782364 | MS.gene020907:CDS |
| GTGTTCTAAATGCAGTCTCT+TGG | 0.422091 | 5.4:-76782213 | MS.gene020907:CDS |
| CTTTCATTTCACCTTCTGGT+TGG | 0.424491 | 5.4:-76782678 | MS.gene020907:CDS |
| TTTCAAGGGTTTGAAGTGAT+TGG | 0.434245 | 5.4:-76781854 | MS.gene020907:CDS |
| AGCCATGTATGGTGGCAAAA+TGG | 0.449205 | 5.4:-76782470 | MS.gene020907:CDS |
| GAAGAGAAAATGAGGAAAGA+GGG | 0.453995 | 5.4:-76781719 | MS.gene020907:CDS |
| CCTGTCATCTGTGGTGAAGT+AGG | 0.466325 | 5.4:+76782637 | None:intergenic |
| GTTTCATTCTTGGAACCGTT+GGG | 0.469923 | 5.4:-76782087 | MS.gene020907:CDS |
| AATAGGCGCACCGTTATGAA+TGG | 0.475616 | 5.4:+76782444 | None:intergenic |
| TTGAAGTGATTGGTGCTAGT+AGG | 0.475727 | 5.4:-76781844 | MS.gene020907:CDS |
| ACAATGTTAAGAGTGATTCA+TGG | 0.476434 | 5.4:-76782235 | MS.gene020907:CDS |
| TATGGACTCCACAGGAAGCT+TGG | 0.480300 | 5.4:-76782019 | MS.gene020907:CDS |
| AGGAGGTTGATATTATCAAA+AGG | 0.484868 | 5.4:+76782505 | None:intergenic |
| GGAAGAGAAAATGAGGAAAG+AGG | 0.485997 | 5.4:-76781720 | MS.gene020907:CDS |
| AATTGATGTTGTTGGATGGA+TGG | 0.487039 | 5.4:+76782330 | None:intergenic |
| TGAATCACTCTTAACATTGT+GGG | 0.490877 | 5.4:+76782238 | None:intergenic |
| TGGGAAAATGACGCCGGGAG+TGG | 0.492624 | 5.4:-76782044 | MS.gene020907:CDS |
| TTGAGGCTTGTTGTGTTGGA+AGG | 0.492815 | 5.4:+76782755 | None:intergenic |
| TTTGGTATTGGTATTCAACT+TGG | 0.506466 | 5.4:-76782064 | MS.gene020907:CDS |
| AATCTAAGGAAGAGAAAATG+AGG | 0.507309 | 5.4:-76781727 | MS.gene020907:CDS |
| ACCTGATAAAACATCAAAAG+TGG | 0.513424 | 5.4:+76782291 | None:intergenic |
| TCATTTCCAGACCCAAATAC+AGG | 0.515763 | 5.4:-76782598 | MS.gene020907:CDS |
| GCTATTGAGGCTTGTTGTGT+TGG | 0.518027 | 5.4:+76782751 | None:intergenic |
| CTGTCATCTGTGGTGAAGTA+GGG | 0.518608 | 5.4:+76782638 | None:intergenic |
| TTGGAACTAGTTCTGACAAA+GGG | 0.523954 | 5.4:-76781691 | MS.gene020907:CDS |
| GCATGAGCATAGAACCATGC+AGG | 0.535959 | 5.4:+76782127 | None:intergenic |
| GTTCTAAATGCAGTCTCTTG+GGG | 0.536425 | 5.4:-76782211 | MS.gene020907:CDS |
| TTGGTATTGGTATTCAACTT+GGG | 0.537285 | 5.4:-76782063 | MS.gene020907:CDS |
| GATGTTGTTGGATGGATGGT+TGG | 0.537684 | 5.4:+76782334 | None:intergenic |
| ATGAATCACTCTTAACATTG+TGG | 0.537907 | 5.4:+76782237 | None:intergenic |
| GATCAATTGATGTTGTTGGA+TGG | 0.539796 | 5.4:+76782326 | None:intergenic |
| GCTTTGTGAATGTGTTTCAA+GGG | 0.546917 | 5.4:-76781868 | MS.gene020907:CDS |
| ACAGTAGTGTCAAGAATGAA+AGG | 0.550198 | 5.4:+76782559 | None:intergenic |
| GCATGGTTCTATGCTCATGC+AGG | 0.552883 | 5.4:-76782124 | MS.gene020907:CDS |
| TGGGTCTGGAAATGATATCA+AGG | 0.553986 | 5.4:+76782606 | None:intergenic |
| GTTCTAAGGTGGAGCTGTGA+GGG | 0.559595 | 5.4:+76782716 | None:intergenic |
| CACAACAAGCCTCAATAGCA+TGG | 0.563316 | 5.4:-76782747 | MS.gene020907:CDS |
| TTCAAACATTAGGCCCTGCA+TGG | 0.563413 | 5.4:-76782141 | MS.gene020907:CDS |
| TCCTCTGCAGCCATGTATGG+TGG | 0.565035 | 5.4:-76782478 | MS.gene020907:CDS |
| TGGAGTCCATACTCCACTCC+CGG | 0.569779 | 5.4:+76782031 | None:intergenic |
| GCCACCATACATGGCTGCAG+AGG | 0.571339 | 5.4:+76782477 | None:intergenic |
| AGAATTGACCTCCAAAGCAA+TGG | 0.580565 | 5.4:+76781769 | None:intergenic |
| AAAGAAGATTAGTTCTAAGG+TGG | 0.580824 | 5.4:+76782705 | None:intergenic |
| CAACTTGGGAAAATGACGCC+GGG | 0.583394 | 5.4:-76782049 | MS.gene020907:CDS |
| ACATGGCTGCAGAGGAAGAG+AGG | 0.585108 | 5.4:+76782485 | None:intergenic |
| GTGGAAAGTCCATGCTATTG+AGG | 0.587691 | 5.4:+76782738 | None:intergenic |
| CCTACTTCACCACAGATGAC+AGG | 0.588741 | 5.4:-76782637 | MS.gene020907:CDS |
| GAGTGGAGTATGGACTCCAC+AGG | 0.602871 | 5.4:-76782027 | MS.gene020907:CDS |
| CCAAAGTCTGCAAAGCTCCA+AGG | 0.604381 | 5.4:+76781981 | None:intergenic |
| CCGCTATTCCAAGCTTCCTG+TGG | 0.608097 | 5.4:+76782011 | None:intergenic |
| CCACAGGAAGCTTGGAATAG+CGG | 0.609878 | 5.4:-76782011 | MS.gene020907:CDS |
| TCAACTTGGGAAAATGACGC+CGG | 0.610530 | 5.4:-76782050 | MS.gene020907:CDS |
| TCAAAAGGTTGAGAGAGAAG+TGG | 0.614618 | 5.4:+76782520 | None:intergenic |
| AAAATGGCAACCATTCATAA+CGG | 0.616375 | 5.4:-76782454 | MS.gene020907:CDS |
| CCAAATCCAACCCAACCAGA+AGG | 0.618606 | 5.4:+76782667 | None:intergenic |
| AGTTCTGACAAAGGGAGTAG+TGG | 0.620980 | 5.4:-76781683 | MS.gene020907:CDS |
| CATTGTTGCTCTCTCAAATG+TGG | 0.625854 | 5.4:+76781657 | None:intergenic |
| GCATTAGTTCCTGTCATCTG+TGG | 0.629559 | 5.4:+76782628 | None:intergenic |
| CTAAGGTGGAGCTGTGAGGG+TGG | 0.630452 | 5.4:+76782719 | None:intergenic |
| AGTTCTAAGGTGGAGCTGTG+AGG | 0.642313 | 5.4:+76782715 | None:intergenic |
| GAATCACTCTTAACATTGTG+GGG | 0.643050 | 5.4:+76782239 | None:intergenic |
| GTCAGTGTGTTGAAATGATG+AGG | 0.644052 | 5.4:+76782261 | None:intergenic |
| ATTGGAACTAGTTCTGACAA+AGG | 0.648605 | 5.4:-76781692 | MS.gene020907:CDS |
| AAAGACCTCTATTCCAAACA+AGG | 0.655433 | 5.4:+76782374 | None:intergenic |
| CATGAGCATAGAACCATGCA+GGG | 0.659464 | 5.4:+76782128 | None:intergenic |
| CGTGCTGTTATCGCTCCCGT+AGG | 0.660166 | 5.4:+76782178 | None:intergenic |
| GACCTCTATTCCAAACAAGG+TGG | 0.670337 | 5.4:+76782377 | None:intergenic |
| AATACCAATACCAAACCCAA+CGG | 0.681789 | 5.4:+76782072 | None:intergenic |
| AAGAGTAACCAACAAAATGG+TGG | 0.683274 | 5.4:+76781903 | None:intergenic |
| TGGCTGCAGAGGAAGAGAGG+AGG | 0.691481 | 5.4:+76782488 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTAGGAAATCTA+AGG | - | chr5.4:76782689-76782708 | MS.gene020907:CDS | 20.0% |
| ! | CCAAATTGAGTTATTGTTTA+GGG | - | chr5.4:76782616-76782635 | MS.gene020907:CDS | 25.0% |
| !!! | ATTCTTGGGTTATTTTTTGT+AGG | - | chr5.4:76782679-76782698 | MS.gene020907:CDS | 25.0% |
| AAAATGGCAACCATTCATAA+CGG | - | chr5.4:76781976-76781995 | MS.gene020907:CDS | 30.0% | |
| AATAGAGGTCTTTATGTTCA+AGG | - | chr5.4:76782066-76782085 | MS.gene020907:CDS | 30.0% | |
| AATCTAAGGAAGAGAAAATG+AGG | - | chr5.4:76782703-76782722 | MS.gene020907:CDS | 30.0% | |
| ACAATGTTAAGAGTGATTCA+TGG | - | chr5.4:76782195-76782214 | MS.gene020907:CDS | 30.0% | |
| ACCTGATAAAACATCAAAAG+TGG | + | chr5.4:76782142-76782161 | None:intergenic | 30.0% | |
| ACCTTAGAACTAATCTTCTT+TGG | - | chr5.4:76781727-76781746 | MS.gene020907:CDS | 30.0% | |
| AGAACTATTTGTCCTGTATT+TGG | + | chr5.4:76781847-76781866 | None:intergenic | 30.0% | |
| ATGAATCACTCTTAACATTG+TGG | + | chr5.4:76782196-76782215 | None:intergenic | 30.0% | |
| CAAATACTACGAACAAGTTT+AGG | - | chr5.4:76782487-76782506 | MS.gene020907:CDS | 30.0% | |
| CCCTAAACAATAACTCAATT+TGG | + | chr5.4:76782619-76782638 | None:intergenic | 30.0% | |
| GAACTATTTGTCCTGTATTT+GGG | + | chr5.4:76781846-76781865 | None:intergenic | 30.0% | |
| GATAGATCAATTGATGTTGT+TGG | + | chr5.4:76782111-76782130 | None:intergenic | 30.0% | |
| GCCAAATTGAGTTATTGTTT+AGG | - | chr5.4:76782615-76782634 | MS.gene020907:CDS | 30.0% | |
| TGAATCACTCTTAACATTGT+GGG | + | chr5.4:76782195-76782214 | None:intergenic | 30.0% | |
| ! | AAATCTTACCACCATTTTGT+TGG | - | chr5.4:76782519-76782538 | MS.gene020907:CDS | 30.0% |
| ! | CAAATGTTTGGTTTCATTCT+TGG | - | chr5.4:76782333-76782352 | MS.gene020907:CDS | 30.0% |
| ! | CTAAACTTGTTCGTAGTATT+TGG | + | chr5.4:76782489-76782508 | None:intergenic | 30.0% |
| !! | AAAGAAGATTAGTTCTAAGG+TGG | + | chr5.4:76781728-76781747 | None:intergenic | 30.0% |
| !! | ACCAAAGAAGATTAGTTCTA+AGG | + | chr5.4:76781731-76781750 | None:intergenic | 30.0% |
| !! | AGGAGGTTGATATTATCAAA+AGG | + | chr5.4:76781928-76781947 | None:intergenic | 30.0% |
| !! | TTGGTATTGGTATTCAACTT+GGG | - | chr5.4:76782367-76782386 | MS.gene020907:CDS | 30.0% |
| !! | TTTGGTATTGGTATTCAACT+TGG | - | chr5.4:76782366-76782385 | MS.gene020907:CDS | 30.0% |
| AAACCAAAATCCACCTTGTT+TGG | - | chr5.4:76782043-76782062 | MS.gene020907:CDS | 35.0% | |
| AAAGACCTCTATTCCAAACA+AGG | + | chr5.4:76782059-76782078 | None:intergenic | 35.0% | |
| AAGAGTAACCAACAAAATGG+TGG | + | chr5.4:76782530-76782549 | None:intergenic | 35.0% | |
| AATACCAATACCAAACCCAA+CGG | + | chr5.4:76782361-76782380 | None:intergenic | 35.0% | |
| AATTGATGTTGTTGGATGGA+TGG | + | chr5.4:76782103-76782122 | None:intergenic | 35.0% | |
| ACAGTAGTGTCAAGAATGAA+AGG | + | chr5.4:76781874-76781893 | None:intergenic | 35.0% | |
| AGTTTGGCGTAGATTTGAAT+AGG | + | chr5.4:76782006-76782025 | None:intergenic | 35.0% | |
| CACAAGAGTAACCAACAAAA+TGG | + | chr5.4:76782533-76782552 | None:intergenic | 35.0% | |
| CATGCAGGAATACAAATGTT+TGG | - | chr5.4:76782321-76782340 | MS.gene020907:CDS | 35.0% | |
| CTTCGACACTTTCAAACATT+AGG | - | chr5.4:76782279-76782298 | MS.gene020907:CDS | 35.0% | |
| GAAGAGAAAATGAGGAAAGA+GGG | - | chr5.4:76782711-76782730 | MS.gene020907:CDS | 35.0% | |
| GAATCACTCTTAACATTGTG+GGG | + | chr5.4:76782194-76782213 | None:intergenic | 35.0% | |
| GATCAATTGATGTTGTTGGA+TGG | + | chr5.4:76782107-76782126 | None:intergenic | 35.0% | |
| GCTTTGTGAATGTGTTTCAA+GGG | - | chr5.4:76782562-76782581 | MS.gene020907:CDS | 35.0% | |
| TTAGGGCTTTCTACTCTTAT+TGG | - | chr5.4:76782633-76782652 | MS.gene020907:CDS | 35.0% | |
| ! | CGAACAAGTTTAGGAAGTAT+TGG | - | chr5.4:76782496-76782515 | MS.gene020907:CDS | 35.0% |
| ! | TATTGGTGTTTCCATTGCTT+TGG | - | chr5.4:76782650-76782669 | MS.gene020907:CDS | 35.0% |
| ! | TGTTCTAAATGCAGTCTCTT+GGG | - | chr5.4:76782218-76782237 | MS.gene020907:CDS | 35.0% |
| ! | TTGGGGTATACTTTTACCTA+CGG | - | chr5.4:76782236-76782255 | MS.gene020907:CDS | 35.0% |
| ! | TTTCAAGGGTTTGAAGTGAT+TGG | - | chr5.4:76782576-76782595 | MS.gene020907:CDS | 35.0% |
| ! | TTTCATTTCACCTTCTGGTT+GGG | - | chr5.4:76781753-76781772 | MS.gene020907:CDS | 35.0% |
| !! | AGACTTTGGCATTGTTGTTT+AGG | - | chr5.4:76782463-76782482 | MS.gene020907:CDS | 35.0% |
| !! | ATTCCAAACAAGGTGGATTT+TGG | + | chr5.4:76782049-76782068 | None:intergenic | 35.0% |
| !! | ATTGGAACTAGTTCTGACAA+AGG | - | chr5.4:76782738-76782757 | MS.gene020907:CDS | 35.0% |
| !! | TTGGAACTAGTTCTGACAAA+GGG | - | chr5.4:76782739-76782758 | MS.gene020907:CDS | 35.0% |
| !! | TTTTGTTGGTTACTCTTGTG+TGG | - | chr5.4:76782533-76782552 | MS.gene020907:CDS | 35.0% |
| !!! | GCCACTTTTGATGTTTTATC+AGG | - | chr5.4:76782138-76782157 | MS.gene020907:CDS | 35.0% |
| AGAATTGACCTCCAAAGCAA+TGG | + | chr5.4:76782664-76782683 | None:intergenic | 40.0% | |
| ATGAGGAAAGAGGGACTTAT+TGG | - | chr5.4:76782720-76782739 | MS.gene020907:CDS | 40.0% | |
| ATTTGTCCTGTATTTGGGTC+TGG | + | chr5.4:76781841-76781860 | None:intergenic | 40.0% | |
| CTTTCATTTCACCTTCTGGT+TGG | - | chr5.4:76781752-76781771 | MS.gene020907:CDS | 40.0% | |
| GGAAGAGAAAATGAGGAAAG+AGG | - | chr5.4:76782710-76782729 | MS.gene020907:CDS | 40.0% | |
| GGTACTTTCATTTCACCTTC+TGG | - | chr5.4:76781748-76781767 | MS.gene020907:CDS | 40.0% | |
| GTCAGTGTGTTGAAATGATG+AGG | + | chr5.4:76782172-76782191 | None:intergenic | 40.0% | |
| GTTTCATTCTTGGAACCGTT+GGG | - | chr5.4:76782343-76782362 | MS.gene020907:CDS | 40.0% | |
| TCAAAAGGTTGAGAGAGAAG+TGG | + | chr5.4:76781913-76781932 | None:intergenic | 40.0% | |
| TCATTTCCAGACCCAAATAC+AGG | - | chr5.4:76781832-76781851 | MS.gene020907:CDS | 40.0% | |
| TGGGTCTGGAAATGATATCA+AGG | + | chr5.4:76781827-76781846 | None:intergenic | 40.0% | |
| ! | ATCCACCTTGTTTGGAATAG+AGG | - | chr5.4:76782051-76782070 | MS.gene020907:CDS | 40.0% |
| ! | ATTCGACTCGAGTTTGAGTT+TGG | + | chr5.4:76782022-76782041 | None:intergenic | 40.0% |
| ! | GAGAGAGAAGTGGTGATTTT+TGG | + | chr5.4:76781903-76781922 | None:intergenic | 40.0% |
| ! | GGCTTTGTGAATGTGTTTCA+AGG | - | chr5.4:76782561-76782580 | MS.gene020907:CDS | 40.0% |
| ! | GTGTTCTAAATGCAGTCTCT+TGG | - | chr5.4:76782217-76782236 | MS.gene020907:CDS | 40.0% |
| ! | GTTCTAAATGCAGTCTCTTG+GGG | - | chr5.4:76782219-76782238 | MS.gene020907:CDS | 40.0% |
| ! | TGGGGTATACTTTTACCTAC+GGG | - | chr5.4:76782237-76782256 | MS.gene020907:CDS | 40.0% |
| !! | TGCTTTGGAGGTCAATTCTT+GGG | - | chr5.4:76782665-76782684 | MS.gene020907:CDS | 40.0% |
| !! | TTGAAGTGATTGGTGCTAGT+AGG | - | chr5.4:76782586-76782605 | MS.gene020907:CDS | 40.0% |
| !! | TTGCTTTGGAGGTCAATTCT+TGG | - | chr5.4:76782664-76782683 | MS.gene020907:CDS | 40.0% |
| AATAGGCGCACCGTTATGAA+TGG | + | chr5.4:76781989-76782008 | None:intergenic | 45.0% | |
| AGCCATGTATGGTGGCAAAA+TGG | - | chr5.4:76781960-76781979 | MS.gene020907:CDS | 45.0% | |
| ATTCTTGGAACCGTTGGGTT+TGG | - | chr5.4:76782348-76782367 | MS.gene020907:CDS | 45.0% | |
| CACAACAAGCCTCAATAGCA+TGG | - | chr5.4:76781683-76781702 | MS.gene020907:CDS | 45.0% | |
| CATGAGCATAGAACCATGCA+GGG | + | chr5.4:76782305-76782324 | None:intergenic | 45.0% | |
| CTGTCATCTGTGGTGAAGTA+GGG | + | chr5.4:76781795-76781814 | None:intergenic | 45.0% | |
| GACCTCTATTCCAAACAAGG+TGG | + | chr5.4:76782056-76782075 | None:intergenic | 45.0% | |
| GATGTTGTTGGATGGATGGT+TGG | + | chr5.4:76782099-76782118 | None:intergenic | 45.0% | |
| GCATTAGTTCCTGTCATCTG+TGG | + | chr5.4:76781805-76781824 | None:intergenic | 45.0% | |
| GGTTACTCTTGTGTGGTTCT+TGG | - | chr5.4:76782540-76782559 | MS.gene020907:CDS | 45.0% | |
| GGTTTCATTCTTGGAACCGT+TGG | - | chr5.4:76782342-76782361 | MS.gene020907:CDS | 45.0% | |
| GTGGAAAGTCCATGCTATTG+AGG | + | chr5.4:76781695-76781714 | None:intergenic | 45.0% | |
| TCAACTTGGGAAAATGACGC+CGG | - | chr5.4:76782380-76782399 | MS.gene020907:CDS | 45.0% | |
| TGGTGTTTCCATTGCTTTGG+AGG | - | chr5.4:76782653-76782672 | MS.gene020907:CDS | 45.0% | |
| TTCAAACATTAGGCCCTGCA+TGG | - | chr5.4:76782289-76782308 | MS.gene020907:CDS | 45.0% | |
| ! | AGTTCTGACAAAGGGAGTAG+TGG | - | chr5.4:76782747-76782766 | MS.gene020907:CDS | 45.0% |
| ! | ATTTCACCTTCTGGTTGGGT+TGG | - | chr5.4:76781757-76781776 | MS.gene020907:CDS | 45.0% |
| !! | GCTATTGAGGCTTGTTGTGT+TGG | + | chr5.4:76781682-76781701 | None:intergenic | 45.0% |
| !! | TTGAGGCTTGTTGTGTTGGA+AGG | + | chr5.4:76781678-76781697 | None:intergenic | 45.0% |
| !!! | TGCCATTTTGCCACCATACA+TGG | + | chr5.4:76781965-76781984 | None:intergenic | 45.0% |
| CAACTTGGGAAAATGACGCC+GGG | - | chr5.4:76782381-76782400 | MS.gene020907:CDS | 50.0% | |
| CCAAAGTCTGCAAAGCTCCA+AGG | + | chr5.4:76782452-76782471 | None:intergenic | 50.0% | |
| CCAAATCCAACCCAACCAGA+AGG | + | chr5.4:76781766-76781785 | None:intergenic | 50.0% | |
| CCACAGGAAGCTTGGAATAG+CGG | - | chr5.4:76782419-76782438 | MS.gene020907:CDS | 50.0% | |
| CCTACTTCACCACAGATGAC+AGG | - | chr5.4:76781793-76781812 | MS.gene020907:CDS | 50.0% | |
| CCTGTCATCTGTGGTGAAGT+AGG | + | chr5.4:76781796-76781815 | None:intergenic | 50.0% | |
| CCTTGGAGCTTTGCAGACTT+TGG | - | chr5.4:76782449-76782468 | MS.gene020907:CDS | 50.0% | |
| GCATGAGCATAGAACCATGC+AGG | + | chr5.4:76782306-76782325 | None:intergenic | 50.0% | |
| TATGGACTCCACAGGAAGCT+TGG | - | chr5.4:76782411-76782430 | MS.gene020907:CDS | 50.0% | |
| TCTTCCTCTGCAGCCATGTA+TGG | - | chr5.4:76781949-76781968 | MS.gene020907:CDS | 50.0% | |
| ! | GCATGGTTCTATGCTCATGC+AGG | - | chr5.4:76782306-76782325 | MS.gene020907:CDS | 50.0% |
| ! | GGAACCGTTGGGTTTGGTAT+TGG | - | chr5.4:76782354-76782373 | MS.gene020907:CDS | 50.0% |
| ! | GGAATAGCGGTGTTTTGCCT+TGG | - | chr5.4:76782432-76782451 | MS.gene020907:CDS | 50.0% |
| !! | AGTTCTAAGGTGGAGCTGTG+AGG | + | chr5.4:76781718-76781737 | None:intergenic | 50.0% |
| !! | CCTTCTGGTTGGGTTGGATT+TGG | - | chr5.4:76781763-76781782 | MS.gene020907:CDS | 50.0% |
| !! | GTTCTAAGGTGGAGCTGTGA+GGG | + | chr5.4:76781717-76781736 | None:intergenic | 50.0% |
| ACATGGCTGCAGAGGAAGAG+AGG | + | chr5.4:76781948-76781967 | None:intergenic | 55.0% | |
| CCGCTATTCCAAGCTTCCTG+TGG | + | chr5.4:76782422-76782441 | None:intergenic | 55.0% | |
| GAGTGGAGTATGGACTCCAC+AGG | - | chr5.4:76782403-76782422 | MS.gene020907:CDS | 55.0% | |
| TCCTCTGCAGCCATGTATGG+TGG | - | chr5.4:76781952-76781971 | MS.gene020907:CDS | 55.0% | |
| TGGAGTCCATACTCCACTCC+CGG | + | chr5.4:76782402-76782421 | None:intergenic | 55.0% | |
| ATGACGCCGGGAGTGGAGTA+TGG | - | chr5.4:76782393-76782412 | MS.gene020907:CDS | 60.0% | |
| CTAAGGTGGAGCTGTGAGGG+TGG | + | chr5.4:76781714-76781733 | None:intergenic | 60.0% | |
| GCCACCATACATGGCTGCAG+AGG | + | chr5.4:76781956-76781975 | None:intergenic | 60.0% | |
| TGGCTGCAGAGGAAGAGAGG+AGG | + | chr5.4:76781945-76781964 | None:intergenic | 60.0% | |
| TGGGAAAATGACGCCGGGAG+TGG | - | chr5.4:76782386-76782405 | MS.gene020907:CDS | 60.0% | |
| ! | CGTGCTGTTATCGCTCCCGT+AGG | + | chr5.4:76782255-76782274 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 76781670 | 76782782 | 76781670 | ID=MS.gene020907 |
| chr5.4 | mRNA | 76781670 | 76782782 | 76781670 | ID=MS.gene020907.t1;Parent=MS.gene020907 |
| chr5.4 | exon | 76781670 | 76782782 | 76781670 | ID=MS.gene020907.t1.exon1;Parent=MS.gene020907.t1 |
| chr5.4 | CDS | 76781670 | 76782782 | 76781670 | ID=cds.MS.gene020907.t1;Parent=MS.gene020907.t1 |
| Gene Sequence |
| Protein sequence |
