Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022254.t1 | XP_013461059.1 | 93 | 201 | 14 | 0 | 1 | 201 | 1 | 201 | 2.50E-95 | 358.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022254.t1 | Q9SB04 | 64.1 | 181 | 58 | 3 | 6 | 180 | 3 | 182 | 3.1e-54 | 213.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022254.t1 | A0A072V140 | 93.0 | 201 | 14 | 0 | 1 | 201 | 1 | 201 | 1.8e-95 | 358.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene022254.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065402 | MS.gene022254 | PPI |
| MS.gene029745 | MS.gene022254 | PPI |
| MS.gene47429 | MS.gene022254 | PPI |
| MS.gene022254 | MS.gene051416 | PPI |
| MS.gene065401 | MS.gene022254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022254.t1 | MTR_3g078613 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 3.21e-141 | 392 |
| MS.gene022254.t1 | MTR_3g078613 | 97.015 | 201 | 5 | 1 | 1 | 201 | 1 | 200 | 1.66e-138 | 385 |
| MS.gene022254.t1 | MTR_4g106590 | 68.981 | 216 | 51 | 5 | 1 | 201 | 1 | 215 | 3.62e-90 | 263 |
| MS.gene022254.t1 | MTR_1g049100 | 61.688 | 154 | 53 | 3 | 22 | 173 | 7 | 156 | 1.73e-58 | 182 |
| MS.gene022254.t1 | MTR_5g036480 | 65.035 | 143 | 45 | 2 | 17 | 155 | 10 | 151 | 1.66e-57 | 181 |
| MS.gene022254.t1 | MTR_7g490310 | 52.761 | 163 | 67 | 3 | 18 | 171 | 4 | 165 | 1.24e-52 | 169 |
| MS.gene022254.t1 | MTR_3g093860 | 58.647 | 133 | 50 | 2 | 24 | 153 | 19 | 149 | 1.38e-49 | 158 |
| MS.gene022254.t1 | MTR_8g038620 | 54.667 | 150 | 57 | 3 | 18 | 158 | 4 | 151 | 1.09e-48 | 157 |
| MS.gene022254.t1 | MTR_3g088630 | 50.667 | 150 | 54 | 2 | 22 | 153 | 21 | 168 | 3.50e-46 | 152 |
| MS.gene022254.t1 | MTR_3g015490 | 49.390 | 164 | 70 | 4 | 20 | 174 | 1 | 160 | 6.76e-44 | 144 |
| MS.gene022254.t1 | MTR_6g007460 | 39.286 | 196 | 67 | 2 | 15 | 158 | 3 | 198 | 2.47e-37 | 129 |
| MS.gene022254.t1 | MTR_4g051330 | 46.053 | 76 | 41 | 0 | 99 | 174 | 74 | 149 | 3.64e-17 | 75.1 |
| MS.gene022254.t1 | MTR_3g092780 | 28.859 | 149 | 96 | 3 | 23 | 171 | 56 | 194 | 1.52e-13 | 68.9 |
| MS.gene022254.t1 | MTR_3g092780 | 28.859 | 149 | 96 | 3 | 23 | 171 | 56 | 194 | 1.77e-13 | 68.6 |
| MS.gene022254.t1 | MTR_3g092780 | 30.534 | 131 | 81 | 3 | 23 | 153 | 56 | 176 | 1.04e-12 | 66.2 |
| MS.gene022254.t1 | MTR_3g092780 | 30.534 | 131 | 81 | 3 | 23 | 153 | 56 | 176 | 1.22e-12 | 66.2 |
| MS.gene022254.t1 | MTR_4g061360 | 30.597 | 134 | 83 | 2 | 20 | 153 | 86 | 209 | 7.18e-12 | 63.9 |
| MS.gene022254.t1 | MTR_8g024260 | 28.682 | 129 | 82 | 2 | 25 | 153 | 38 | 156 | 8.93e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022254.t1 | AT3G48100 | 63.736 | 182 | 59 | 3 | 5 | 180 | 2 | 182 | 1.91e-75 | 225 |
| MS.gene022254.t1 | AT1G74890 | 75.333 | 150 | 30 | 3 | 22 | 167 | 17 | 163 | 1.07e-71 | 216 |
| MS.gene022254.t1 | AT5G62920 | 74.483 | 145 | 35 | 2 | 23 | 167 | 25 | 167 | 1.51e-70 | 213 |
| MS.gene022254.t1 | AT1G19050 | 67.089 | 158 | 49 | 2 | 3 | 158 | 2 | 158 | 3.35e-69 | 210 |
| MS.gene022254.t1 | AT1G59940 | 62.857 | 175 | 45 | 5 | 1 | 158 | 1 | 172 | 1.87e-66 | 204 |
| MS.gene022254.t1 | AT1G59940 | 62.857 | 175 | 45 | 5 | 1 | 158 | 93 | 264 | 3.72e-65 | 204 |
| MS.gene022254.t1 | AT1G10470 | 66.443 | 149 | 49 | 1 | 14 | 162 | 11 | 158 | 2.05e-63 | 196 |
| MS.gene022254.t1 | AT1G10470 | 72.727 | 132 | 35 | 1 | 22 | 153 | 33 | 163 | 3.50e-63 | 196 |
| MS.gene022254.t1 | AT2G41310 | 56.667 | 150 | 56 | 3 | 21 | 162 | 7 | 155 | 3.78e-53 | 170 |
| MS.gene022254.t1 | AT3G57040 | 57.534 | 146 | 51 | 2 | 18 | 153 | 4 | 148 | 4.01e-53 | 170 |
| MS.gene022254.t1 | AT3G57040 | 57.534 | 146 | 51 | 2 | 18 | 153 | 4 | 148 | 4.01e-53 | 170 |
| MS.gene022254.t1 | AT2G40670 | 59.559 | 136 | 50 | 2 | 22 | 153 | 28 | 162 | 4.88e-53 | 167 |
| MS.gene022254.t1 | AT3G56380 | 58.647 | 133 | 54 | 1 | 22 | 153 | 19 | 151 | 1.05e-52 | 166 |
| MS.gene022254.t1 | AT2G40670 | 58.824 | 136 | 50 | 3 | 22 | 153 | 28 | 161 | 2.90e-50 | 160 |
| MS.gene022254.t1 | AT3G56380 | 57.895 | 133 | 54 | 2 | 22 | 153 | 19 | 150 | 5.86e-50 | 159 |
| MS.gene022254.t1 | AT1G10470 | 61.111 | 72 | 28 | 0 | 91 | 162 | 25 | 96 | 7.83e-23 | 90.9 |
| MS.gene022254.t1 | AT2G07440 | 52.941 | 68 | 32 | 0 | 95 | 162 | 2 | 69 | 1.13e-16 | 73.6 |
| MS.gene022254.t1 | AT5G07210 | 30.508 | 177 | 97 | 6 | 1 | 175 | 1 | 153 | 6.67e-15 | 72.8 |
| MS.gene022254.t1 | AT5G24470 | 29.771 | 131 | 82 | 3 | 23 | 153 | 50 | 170 | 2.55e-12 | 65.5 |
| MS.gene022254.t1 | AT1G67710 | 30.137 | 146 | 89 | 3 | 14 | 159 | 2 | 134 | 1.06e-11 | 63.5 |
| MS.gene022254.t1 | AT2G46790 | 27.481 | 131 | 85 | 2 | 23 | 153 | 37 | 157 | 1.79e-11 | 62.8 |
| MS.gene022254.t1 | AT2G46790 | 27.481 | 131 | 85 | 2 | 23 | 153 | 37 | 157 | 2.09e-11 | 62.4 |
| MS.gene022254.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.63e-11 | 60.8 |
| MS.gene022254.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.63e-11 | 60.8 |
| MS.gene022254.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.63e-11 | 60.8 |
| MS.gene022254.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 7.16e-11 | 60.8 |
Find 41 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCTTACCTATCAATT+CGG | 0.347926 | 3.3:-66556282 | None:intergenic |
| TGAATTGCTCAAGAAGATTA+AGG | 0.356380 | 3.3:+66556041 | MS.gene022254:CDS |
| ACTAGAGCTTTACAGTATCT+TGG | 0.363036 | 3.3:+66555821 | MS.gene022254:CDS |
| AGCTTTACAGTATCTTGGTT+TGG | 0.366392 | 3.3:+66555826 | MS.gene022254:CDS |
| GATGGTGACACGAGTTCTAT+TGG | 0.385104 | 3.3:+66555848 | MS.gene022254:CDS |
| CTACTGCTGGTGATGTTCTC+AGG | 0.387823 | 3.3:+66555540 | MS.gene022254:CDS |
| TGTTCTCAGGCAGAGTTTAC+CGG | 0.414947 | 3.3:+66555553 | MS.gene022254:CDS |
| TTCACATCTGCCAACTTGAC+AGG | 0.430476 | 3.3:-66557441 | None:intergenic |
| ATGAATCAATGGTTATAGTC+TGG | 0.434730 | 3.3:-66557625 | None:intergenic |
| ATGACTGATTATTCCATGCC+TGG | 0.446869 | 3.3:+66556006 | MS.gene022254:CDS |
| ACATCTTGACCCGAATTGAT+AGG | 0.448548 | 3.3:+66556272 | MS.gene022254:CDS |
| ACACCAGCACCACTCACTTC+CGG | 0.448562 | 3.3:-66555572 | None:intergenic |
| TATTCCATGCCTGGGATGAC+AGG | 0.450141 | 3.3:+66556015 | MS.gene022254:CDS |
| CTTAAATTCACTTCTTGCAA+AGG | 0.463478 | 3.3:+66555659 | MS.gene022254:CDS |
| ATTGACAGTTGCTTGGAAGA+AGG | 0.475916 | 3.3:+66557396 | MS.gene022254:intron |
| TTACAGTATCTTGGTTTGGA+TGG | 0.481557 | 3.3:+66555830 | MS.gene022254:CDS |
| AAGATCTTACCTATCAATTC+GGG | 0.507592 | 3.3:-66556281 | None:intergenic |
| TTTGTTCATTGACAGTTGCT+TGG | 0.513588 | 3.3:+66557389 | MS.gene022254:intron |
| AGAGGTGAAGGAAAGAAAGT+CGG | 0.518178 | 3.3:+66557486 | MS.gene022254:CDS |
| TTACCGGAAGTGAGTGGTGC+TGG | 0.527573 | 3.3:+66555569 | MS.gene022254:CDS |
| AATTCATATCCTGTCATCCC+AGG | 0.536075 | 3.3:-66556024 | None:intergenic |
| TTGATCGTAAAGTCATTGAA+AGG | 0.541223 | 3.3:+66555633 | MS.gene022254:CDS |
| GAAGTGAGTGGTGCTGGTGT+TGG | 0.542048 | 3.3:+66555575 | MS.gene022254:CDS |
| TTGTATTTCATCTCTATCAA+CGG | 0.543618 | 3.3:+66557545 | MS.gene022254:CDS |
| TCAGAGGACATAACCACCAC+TGG | 0.556667 | 3.3:-66556247 | None:intergenic |
| TCTATTGAAACCTGTCAAGT+TGG | 0.561378 | 3.3:+66557431 | MS.gene022254:CDS |
| TTCTTTGACGACATTGCAGA+CGG | 0.571495 | 3.3:-66557600 | None:intergenic |
| GGTGAAGGAAAGAAAGTCGG+AGG | 0.571633 | 3.3:+66557489 | MS.gene022254:CDS |
| ATATCCTGTCATCCCAGGCA+TGG | 0.578908 | 3.3:-66556019 | None:intergenic |
| AGAGTTGCACGTTCTTGCAG+TGG | 0.580799 | 3.3:+66555598 | MS.gene022254:CDS |
| ATTTAGAGAAATTCCAGTGG+TGG | 0.593101 | 3.3:+66556234 | MS.gene022254:CDS |
| GATTTCATAATGAGAGGTGA+AGG | 0.593144 | 3.3:+66557474 | MS.gene022254:CDS |
| TTAACAGATTTCATAATGAG+AGG | 0.593540 | 3.3:+66557468 | MS.gene022254:CDS |
| GACATTGCAGACGGTGACAA+TGG | 0.595350 | 3.3:-66557591 | None:intergenic |
| TTGCTTGGAAGAAGGAGCAG+AGG | 0.596704 | 3.3:+66557404 | MS.gene022254:CDS |
| TGACTGATTATTCCATGCCT+GGG | 0.608852 | 3.3:+66556007 | MS.gene022254:CDS |
| AATATGGTTACAGGGTGTGA+AGG | 0.609461 | 3.3:+66555972 | MS.gene022254:intron |
| GCAGTTACTGTTGTAGAGAG+TGG | 0.636724 | 3.3:+66555797 | MS.gene022254:intron |
| CAGAGTTTACCGGAAGTGAG+TGG | 0.668612 | 3.3:+66555563 | MS.gene022254:CDS |
| TGTATTTAGAGAAATTCCAG+TGG | 0.707997 | 3.3:+66556231 | MS.gene022254:CDS |
| TCGGGTCAAGATGTTCTCAG+AGG | 0.723155 | 3.3:-66556263 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATAATTGCAT+AGG | - | chr3.3:66556437-66556456 | None:intergenic | 10.0% |
| !!! | TTAAATACATGTATATTTTT+GGG | + | chr3.3:66556464-66556483 | MS.gene022254:intron | 10.0% |
| !! | AAATACATCAAAAAAACAAA+AGG | - | chr3.3:66555710-66555729 | None:intergenic | 15.0% |
| !! | AATACATCAAAAAAACAAAA+GGG | - | chr3.3:66555709-66555728 | None:intergenic | 15.0% |
| !!! | GAATTTTTTTTTTTTTGTTG+AGG | + | chr3.3:66555905-66555924 | MS.gene022254:intron | 15.0% |
| !!! | GTTAAATACATGTATATTTT+TGG | + | chr3.3:66556463-66556482 | MS.gene022254:intron | 15.0% |
| !!! | TTTGAATTAGTATTGTTTTA+AGG | + | chr3.3:66556323-66556342 | MS.gene022254:intron | 15.0% |
| !! | AAACAATACTAATTCAAAAG+AGG | - | chr3.3:66556321-66556340 | None:intergenic | 20.0% |
| !! | AAATATCTCAAAAAAGAAGT+CGG | + | chr3.3:66557514-66557533 | MS.gene022254:CDS | 20.0% |
| !! | ATAATTTCAGGAATAAAAGT+AGG | - | chr3.3:66557207-66557226 | None:intergenic | 20.0% |
| !! | ATGATCAATAAATATGAAAC+AGG | - | chr3.3:66557364-66557383 | None:intergenic | 20.0% |
| !! | CATAATACTCAAATCATATT+AGG | + | chr3.3:66556661-66556680 | MS.gene022254:intron | 20.0% |
| !!! | GTATTTTTAGTTTTTGTGTT+TGG | + | chr3.3:66555927-66555946 | MS.gene022254:intron | 20.0% |
| ! | AAAGATCTCAATAGCTAATT+AGG | + | chr3.3:66556702-66556721 | MS.gene022254:intron | 25.0% |
| ! | AATCCTTTCACTAAAATGAT+AGG | + | chr3.3:66556930-66556949 | MS.gene022254:intron | 25.0% |
| ! | ATCCATTTGTGAATTATGTA+TGG | + | chr3.3:66556510-66556529 | MS.gene022254:intron | 25.0% |
| ! | GTGAATTATGTATGGTATAT+GGG | + | chr3.3:66556518-66556537 | MS.gene022254:intron | 25.0% |
| ! | TAACATGGTGATATTATTGA+GGG | - | chr3.3:66557001-66557020 | None:intergenic | 25.0% |
| ! | TACCATACATAATTCACAAA+TGG | - | chr3.3:66556515-66556534 | None:intergenic | 25.0% |
| ! | TATAATTGCCACACAATTAT+AGG | + | chr3.3:66557158-66557177 | MS.gene022254:intron | 25.0% |
| ! | TATTCTTGATTCATTTGGAT+TGG | + | chr3.3:66555736-66555755 | MS.gene022254:intron | 25.0% |
| ! | TCTTGTATTCTTGATTCATT+TGG | + | chr3.3:66555731-66555750 | MS.gene022254:intron | 25.0% |
| ! | TGATAAAACCTATAATTGTG+TGG | - | chr3.3:66557169-66557188 | None:intergenic | 25.0% |
| ! | TGTGAATTATGTATGGTATA+TGG | + | chr3.3:66556517-66556536 | MS.gene022254:intron | 25.0% |
| ! | TTAACAGATTTCATAATGAG+AGG | + | chr3.3:66557468-66557487 | MS.gene022254:CDS | 25.0% |
| ! | TTGCAAAATCTTTCTACTAA+TGG | + | chr3.3:66556964-66556983 | MS.gene022254:intron | 25.0% |
| ! | TTGTATTTCATCTCTATCAA+CGG | + | chr3.3:66557545-66557564 | MS.gene022254:CDS | 25.0% |
| !! | GTAAGCAAAGTTTCTAATTT+TGG | + | chr3.3:66555878-66555897 | MS.gene022254:intron | 25.0% |
| !! | TTTTGATGAATATGGTTACA+GGG | + | chr3.3:66555964-66555983 | MS.gene022254:intron | 25.0% |
| !!! | GAACTTGTTTTTTTTTTGTG+TGG | + | chr3.3:66555775-66555794 | MS.gene022254:intron | 25.0% |
| !!! | GATTGGATTTTAATGGTTTT+TGG | + | chr3.3:66555753-66555772 | MS.gene022254:intron | 25.0% |
| !!! | TAACCTATCATTTTAGTGAA+AGG | - | chr3.3:66556936-66556955 | None:intergenic | 25.0% |
| !!! | TCATTTGGATTGGATTTTAA+TGG | + | chr3.3:66555746-66555765 | MS.gene022254:intron | 25.0% |
| !!! | TCATTTTAGTGAAAGGATTT+TGG | - | chr3.3:66556929-66556948 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTTTGATGAATA+TGG | + | chr3.3:66555956-66555975 | MS.gene022254:intron | 25.0% |
| !!! | TTATTTCTGTTAATTTCAGC+AGG | + | chr3.3:66556201-66556220 | MS.gene022254:intron | 25.0% |
| !!! | TTTGTTTTCTTAGAGATTAG+AGG | + | chr3.3:66556086-66556105 | MS.gene022254:intron | 25.0% |
| AAGATCTTACCTATCAATTC+GGG | - | chr3.3:66556284-66556303 | None:intergenic | 30.0% | |
| AAGTAAGAAACTTCCATTCA+TGG | - | chr3.3:66557336-66557355 | None:intergenic | 30.0% | |
| AATCTCGGCTAAAAAACAAT+AGG | - | chr3.3:66556352-66556371 | None:intergenic | 30.0% | |
| ACAAAAATACAACATAGCCT+TGG | - | chr3.3:66556850-66556869 | None:intergenic | 30.0% | |
| ACCTATAACTAGTCAAAACA+AGG | - | chr3.3:66556387-66556406 | None:intergenic | 30.0% | |
| ATATTACCAATTTACCACCA+AGG | + | chr3.3:66556830-66556849 | MS.gene022254:intron | 30.0% | |
| CAAGATCTTACCTATCAATT+CGG | - | chr3.3:66556285-66556304 | None:intergenic | 30.0% | |
| CATATTGCCAATCATTAAGA+AGG | - | chr3.3:66556776-66556795 | None:intergenic | 30.0% | |
| CATTAAGCCTTCTTAATGAT+TGG | + | chr3.3:66556766-66556785 | MS.gene022254:intron | 30.0% | |
| CCTATAACTAGTCAAAACAA+GGG | - | chr3.3:66556386-66556405 | None:intergenic | 30.0% | |
| CTAACATGGTGATATTATTG+AGG | - | chr3.3:66557002-66557021 | None:intergenic | 30.0% | |
| CTCAATAGCTAATTAGGTTT+AGG | + | chr3.3:66556708-66556727 | MS.gene022254:intron | 30.0% | |
| CTTAAATTCACTTCTTGCAA+AGG | + | chr3.3:66555659-66555678 | MS.gene022254:CDS | 30.0% | |
| GAAGGTTCAACATAACAAAA+TGG | - | chr3.3:66557239-66557258 | None:intergenic | 30.0% | |
| GAGAAAAGGGATTTATTGTT+TGG | - | chr3.3:66556894-66556913 | None:intergenic | 30.0% | |
| GTCTACAATCTAATCTAATC+AGG | - | chr3.3:66556138-66556157 | None:intergenic | 30.0% | |
| TAGAATAAGCAAAAACGTGT+GGG | - | chr3.3:66556553-66556572 | None:intergenic | 30.0% | |
| TGAATTGCTCAAGAAGATTA+AGG | + | chr3.3:66556041-66556060 | MS.gene022254:CDS | 30.0% | |
| TGGTGTTTGTCAATAATTTC+AGG | - | chr3.3:66557219-66557238 | None:intergenic | 30.0% | |
| TGTATTTAGAGAAATTCCAG+TGG | + | chr3.3:66556231-66556250 | MS.gene022254:CDS | 30.0% | |
| TTGATAGGTAAGATCTTGAT+CGG | + | chr3.3:66556287-66556306 | MS.gene022254:intron | 30.0% | |
| TTGATCGTAAAGTCATTGAA+AGG | + | chr3.3:66555633-66555652 | MS.gene022254:CDS | 30.0% | |
| ! | AAATGGATTTCATGTCTAGA+TGG | - | chr3.3:66556498-66556517 | None:intergenic | 30.0% |
| ! | AATGGATTTCATGTCTAGAT+GGG | - | chr3.3:66556497-66556516 | None:intergenic | 30.0% |
| ! | ATGAAATCCATTTTCCTACA+AGG | + | chr3.3:66557102-66557121 | MS.gene022254:intron | 30.0% |
| ! | CAAATTTGATGATCCATGAA+TGG | + | chr3.3:66557320-66557339 | MS.gene022254:intron | 30.0% |
| ! | GACTAGTTATAGGTACATAT+TGG | + | chr3.3:66556393-66556412 | MS.gene022254:intron | 30.0% |
| !! | GTTTTGATGAATATGGTTAC+AGG | + | chr3.3:66555963-66555982 | MS.gene022254:intron | 30.0% |
| ACTAGAGCTTTACAGTATCT+TGG | + | chr3.3:66555821-66555840 | MS.gene022254:CDS | 35.0% | |
| AGCTTTACAGTATCTTGGTT+TGG | + | chr3.3:66555826-66555845 | MS.gene022254:CDS | 35.0% | |
| AGGGATCAAGCTTAAAATCT+CGG | - | chr3.3:66556367-66556386 | None:intergenic | 35.0% | |
| ATAGCTAATTAGGTTTAGGC+TGG | + | chr3.3:66556712-66556731 | MS.gene022254:intron | 35.0% | |
| ATTTAGAGAAATTCCAGTGG+TGG | + | chr3.3:66556234-66556253 | MS.gene022254:CDS | 35.0% | |
| CATGGATCATCAAATTTGCA+AGG | - | chr3.3:66557318-66557337 | None:intergenic | 35.0% | |
| CCATGTGTTTAACTCTAACA+TGG | - | chr3.3:66557016-66557035 | None:intergenic | 35.0% | |
| CCATGTTAGAGTTAAACACA+TGG | + | chr3.3:66557013-66557032 | MS.gene022254:intron | 35.0% | |
| CTAGAATAAGCAAAAACGTG+TGG | - | chr3.3:66556554-66556573 | None:intergenic | 35.0% | |
| GATTTCATAATGAGAGGTGA+AGG | + | chr3.3:66557474-66557493 | MS.gene022254:CDS | 35.0% | |
| TCTATTGAAACCTGTCAAGT+TGG | + | chr3.3:66557431-66557450 | MS.gene022254:CDS | 35.0% | |
| TTTGTTCATTGACAGTTGCT+TGG | + | chr3.3:66557389-66557408 | MS.gene022254:intron | 35.0% | |
| ! | AAAATACAACATAGCCTTGG+TGG | - | chr3.3:66556847-66556866 | None:intergenic | 35.0% |
| ! | CACACGTTTTTGCTTATTCT+AGG | + | chr3.3:66556552-66556571 | MS.gene022254:intron | 35.0% |
| ! | CGTTTTTGCTTATTCTAGGT+TGG | + | chr3.3:66556556-66556575 | MS.gene022254:intron | 35.0% |
| ! | TAGAGGTGTATGTATTGAAG+AGG | + | chr3.3:66556103-66556122 | MS.gene022254:intron | 35.0% |
| !! | TTACAGTATCTTGGTTTGGA+TGG | + | chr3.3:66555830-66555849 | MS.gene022254:CDS | 35.0% |
| !!! | CCCTTGTTTTGACTAGTTAT+AGG | + | chr3.3:66556383-66556402 | MS.gene022254:intron | 35.0% |
| AAATCCAAAAACAGCCATGG+TGG | + | chr3.3:66556627-66556646 | MS.gene022254:intron | 40.0% | |
| AATAATGTTGTCATGCCAGC+AGG | - | chr3.3:66557130-66557149 | None:intergenic | 40.0% | |
| AATATGGTTACAGGGTGTGA+AGG | + | chr3.3:66555972-66555991 | MS.gene022254:intron | 40.0% | |
| AATCCAAAAACAGCCATGGT+GGG | + | chr3.3:66556628-66556647 | MS.gene022254:intron | 40.0% | |
| AATTCATATCCTGTCATCCC+AGG | - | chr3.3:66556027-66556046 | None:intergenic | 40.0% | |
| ACATCTTGACCCGAATTGAT+AGG | + | chr3.3:66556272-66556291 | MS.gene022254:CDS | 40.0% | |
| ACCAAATCCAAAAACAGCCA+TGG | + | chr3.3:66556624-66556643 | MS.gene022254:intron | 40.0% | |
| AGAGGTGAAGGAAAGAAAGT+CGG | + | chr3.3:66557486-66557505 | MS.gene022254:CDS | 40.0% | |
| AGAGTTAAACACATGGAGTG+TGG | + | chr3.3:66557020-66557039 | MS.gene022254:intron | 40.0% | |
| ATAATGTTGTCATGCCAGCA+GGG | - | chr3.3:66557129-66557148 | None:intergenic | 40.0% | |
| ATGACTGATTATTCCATGCC+TGG | + | chr3.3:66556006-66556025 | MS.gene022254:CDS | 40.0% | |
| ATGATTATGATCACCCACCA+TGG | - | chr3.3:66556644-66556663 | None:intergenic | 40.0% | |
| ATTCCCTTATAAGGCTGAGA+AGG | - | chr3.3:66557257-66557276 | None:intergenic | 40.0% | |
| ATTGACAGTTGCTTGGAAGA+AGG | + | chr3.3:66557396-66557415 | MS.gene022254:intron | 40.0% | |
| CTCATGCACATTCCCTTATA+AGG | - | chr3.3:66557266-66557285 | None:intergenic | 40.0% | |
| TGACTGATTATTCCATGCCT+GGG | + | chr3.3:66556007-66556026 | MS.gene022254:CDS | 40.0% | |
| TTCTTTGACGACATTGCAGA+CGG | - | chr3.3:66557603-66557622 | None:intergenic | 40.0% | |
| ! | ACATAGCCTTGGTGGTAAAT+TGG | - | chr3.3:66556839-66556858 | None:intergenic | 40.0% |
| ! | GAACCTTCTCAGCCTTATAA+GGG | + | chr3.3:66557251-66557270 | MS.gene022254:intron | 40.0% |
| ! | TGAACCTTCTCAGCCTTATA+AGG | + | chr3.3:66557250-66557269 | MS.gene022254:intron | 40.0% |
| !! | AAAGGATTTTGGCCATGTGT+TGG | - | chr3.3:66556918-66556937 | None:intergenic | 40.0% |
| !!! | ACCATGGCTGTTTTTGGATT+TGG | - | chr3.3:66556628-66556647 | None:intergenic | 40.0% |
| !!! | ATGGCTGTTTTTGGATTTGG+TGG | - | chr3.3:66556625-66556644 | None:intergenic | 40.0% |
| GATGGTGACACGAGTTCTAT+TGG | + | chr3.3:66555848-66555867 | MS.gene022254:CDS | 45.0% | |
| GCAGTTACTGTTGTAGAGAG+TGG | + | chr3.3:66555797-66555816 | MS.gene022254:intron | 45.0% | |
| TGTTCTCAGGCAGAGTTTAC+CGG | + | chr3.3:66555553-66555572 | MS.gene022254:CDS | 45.0% | |
| TTCACATCTGCCAACTTGAC+AGG | - | chr3.3:66557444-66557463 | None:intergenic | 45.0% | |
| ! | GCCATGTGTTGGTGAGAAAA+GGG | - | chr3.3:66556907-66556926 | None:intergenic | 45.0% |
| ! | TCCCTTTTCTCACCAACACA+TGG | + | chr3.3:66556903-66556922 | MS.gene022254:intron | 45.0% |
| AGAGTTGCACGTTCTTGCAG+TGG | + | chr3.3:66555598-66555617 | MS.gene022254:CDS | 50.0% | |
| ATATCCTGTCATCCCAGGCA+TGG | - | chr3.3:66556022-66556041 | None:intergenic | 50.0% | |
| CAGAGTTTACCGGAAGTGAG+TGG | + | chr3.3:66555563-66555582 | MS.gene022254:CDS | 50.0% | |
| GACATTGCAGACGGTGACAA+TGG | - | chr3.3:66557594-66557613 | None:intergenic | 50.0% | |
| GCAGGGTCCTTGTAGGAAAA+TGG | - | chr3.3:66557112-66557131 | None:intergenic | 50.0% | |
| GGTGAAGGAAAGAAAGTCGG+AGG | + | chr3.3:66557489-66557508 | MS.gene022254:CDS | 50.0% | |
| TATTCCATGCCTGGGATGAC+AGG | + | chr3.3:66556015-66556034 | MS.gene022254:CDS | 50.0% | |
| TCAGAGGACATAACCACCAC+TGG | - | chr3.3:66556250-66556269 | None:intergenic | 50.0% | |
| TCGGGTCAAGATGTTCTCAG+AGG | - | chr3.3:66556266-66556285 | None:intergenic | 50.0% | |
| TTGCTTGGAAGAAGGAGCAG+AGG | + | chr3.3:66557404-66557423 | MS.gene022254:CDS | 50.0% | |
| ! | CTACTGCTGGTGATGTTCTC+AGG | + | chr3.3:66555540-66555559 | MS.gene022254:CDS | 50.0% |
| ! | GGCCATGTGTTGGTGAGAAA+AGG | - | chr3.3:66556908-66556927 | None:intergenic | 50.0% |
| ! | GTTTAGGCTGGCACTGAATG+TGG | + | chr3.3:66556724-66556743 | MS.gene022254:intron | 50.0% |
| ! | TTTTCCTACAAGGACCCTGC+TGG | + | chr3.3:66557112-66557131 | MS.gene022254:intron | 50.0% |
| !! | TCACCCACCATGGCTGTTTT+TGG | - | chr3.3:66556634-66556653 | None:intergenic | 50.0% |
| ACACCAGCACCACTCACTTC+CGG | - | chr3.3:66555575-66555594 | None:intergenic | 55.0% | |
| TTACCGGAAGTGAGTGGTGC+TGG | + | chr3.3:66555569-66555588 | MS.gene022254:CDS | 55.0% | |
| !! | GAAGTGAGTGGTGCTGGTGT+TGG | + | chr3.3:66555575-66555594 | MS.gene022254:CDS | 55.0% |
| CATGCCAGCAGGGTCCTTGT+AGG | - | chr3.3:66557119-66557138 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 66555536 | 66557635 | 66555536 | ID=MS.gene022254 |
| chr3.3 | mRNA | 66555536 | 66557635 | 66555536 | ID=MS.gene022254.t1;Parent=MS.gene022254 |
| chr3.3 | exon | 66555536 | 66555680 | 66555536 | ID=MS.gene022254.t1.exon1;Parent=MS.gene022254.t1 |
| chr3.3 | CDS | 66555536 | 66555680 | 66555536 | ID=cds.MS.gene022254.t1;Parent=MS.gene022254.t1 |
| chr3.3 | exon | 66555801 | 66555877 | 66555801 | ID=MS.gene022254.t1.exon2;Parent=MS.gene022254.t1 |
| chr3.3 | CDS | 66555801 | 66555877 | 66555801 | ID=cds.MS.gene022254.t1;Parent=MS.gene022254.t1 |
| chr3.3 | exon | 66555985 | 66556062 | 66555985 | ID=MS.gene022254.t1.exon3;Parent=MS.gene022254.t1 |
| chr3.3 | CDS | 66555985 | 66556062 | 66555985 | ID=cds.MS.gene022254.t1;Parent=MS.gene022254.t1 |
| chr3.3 | exon | 66556220 | 66556293 | 66556220 | ID=MS.gene022254.t1.exon4;Parent=MS.gene022254.t1 |
| chr3.3 | CDS | 66556220 | 66556293 | 66556220 | ID=cds.MS.gene022254.t1;Parent=MS.gene022254.t1 |
| chr3.3 | exon | 66557404 | 66557635 | 66557404 | ID=MS.gene022254.t1.exon5;Parent=MS.gene022254.t1 |
| chr3.3 | CDS | 66557404 | 66557635 | 66557404 | ID=cds.MS.gene022254.t1;Parent=MS.gene022254.t1 |
| Gene Sequence |
| Protein sequence |
