Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022308.t1 | XP_003601249.1 | 96.6 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 2.10E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022308.t1 | G7J5E4 | 96.6 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 1.5e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022308 | MS.gene53464 | PPI |
| MS.gene80715 | MS.gene022308 | PPI |
| MS.gene027656 | MS.gene022308 | PPI |
| MS.gene44353 | MS.gene022308 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022308.t1 | MTR_3g077630 | 96.591 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 0.0 | 702 |
| MS.gene022308.t1 | MTR_4g105600 | 68.362 | 354 | 106 | 4 | 1 | 352 | 1 | 350 | 4.42e-180 | 503 |
| MS.gene022308.t1 | MTR_8g069820 | 49.575 | 353 | 169 | 4 | 1 | 352 | 1 | 345 | 1.89e-123 | 359 |
| MS.gene022308.t1 | MTR_5g033940 | 50.742 | 337 | 157 | 2 | 16 | 352 | 1 | 328 | 2.08e-118 | 345 |
| MS.gene022308.t1 | MTR_7g035095 | 50.602 | 332 | 143 | 5 | 19 | 350 | 8 | 318 | 5.10e-114 | 334 |
| MS.gene022308.t1 | MTR_8g069805 | 47.042 | 355 | 163 | 5 | 8 | 352 | 21 | 360 | 5.09e-113 | 333 |
| MS.gene022308.t1 | MTR_1g086330 | 39.286 | 336 | 175 | 5 | 27 | 348 | 5 | 325 | 1.45e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene022308.t1 | AT5G62960 | 54.728 | 349 | 134 | 5 | 9 | 352 | 18 | 347 | 4.22e-136 | 391 |
| MS.gene022308.t1 | AT1G70505 | 51.734 | 346 | 160 | 4 | 2 | 347 | 13 | 351 | 2.53e-122 | 356 |
| MS.gene022308.t1 | AT5G62960 | 54.662 | 311 | 117 | 5 | 9 | 314 | 18 | 309 | 1.71e-118 | 345 |
| MS.gene022308.t1 | AT1G70505 | 51.807 | 332 | 153 | 4 | 16 | 347 | 1 | 325 | 5.71e-116 | 339 |
| MS.gene022308.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene022308.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene022308.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene022308.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene022308.t1 | AT3G27770 | 45.283 | 318 | 159 | 4 | 24 | 341 | 13 | 315 | 2.47e-91 | 276 |
| MS.gene022308.t1 | AT1G70505 | 47.388 | 268 | 134 | 4 | 2 | 269 | 13 | 273 | 5.53e-78 | 243 |
| MS.gene022308.t1 | AT3G27770 | 45.136 | 257 | 134 | 2 | 85 | 341 | 23 | 272 | 5.51e-73 | 228 |
| MS.gene022308.t1 | AT1G70505 | 47.222 | 252 | 126 | 4 | 16 | 267 | 1 | 245 | 1.30e-72 | 226 |
| MS.gene022308.t1 | AT2G47115 | 36.533 | 323 | 173 | 4 | 27 | 347 | 5 | 297 | 3.17e-60 | 196 |
Find 67 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAGAGTTATTGGATTAAT+TGG | 0.135883 | 3.4:-74511349 | MS.gene022308:CDS |
| TACTCACTGATTGTGTATTT+TGG | 0.182995 | 3.4:-74510010 | MS.gene022308:CDS |
| ACCTGGAGGCCTTGTTTAAA+AGG | 0.225203 | 3.4:-74511170 | MS.gene022308:CDS |
| AGACAAATACACAGAGTTAT+TGG | 0.237042 | 3.4:-74511358 | MS.gene022308:CDS |
| AATTCACCCTGCCTGGCTTT+TGG | 0.246613 | 3.4:-74511147 | MS.gene022308:CDS |
| TATACTTACCCCAAAGTAAA+AGG | 0.252087 | 3.4:+74510530 | None:intergenic |
| GAAATCAAGTGGTGATAATA+AGG | 0.310675 | 3.4:-74510355 | MS.gene022308:CDS |
| TTTCGCGTTTATTGTGCTTT+TGG | 0.313165 | 3.4:-74511114 | MS.gene022308:CDS |
| GTTTAGATTGTAATCTTTGA+TGG | 0.322863 | 3.4:+74509965 | None:intergenic |
| ATTGTCAATGTTGTTGTTGA+TGG | 0.329364 | 3.4:-74511083 | MS.gene022308:CDS |
| ATTTGTCTTAACAGTCATAA+TGG | 0.332466 | 3.4:+74511373 | None:intergenic |
| ATGGGTTCCCATGAGCCTTT+AGG | 0.343227 | 3.4:+74511392 | None:intergenic |
| TTTGTCTTAACAGTCATAAT+GGG | 0.380779 | 3.4:+74511374 | None:intergenic |
| TCGCCAACATGCTGGAACTT+GGG | 0.386612 | 3.4:-74510217 | MS.gene022308:CDS |
| TTCGCCAACATGCTGGAACT+TGG | 0.393037 | 3.4:-74510218 | MS.gene022308:CDS |
| TAATCTTTGATGGTTAGAAA+TGG | 0.396997 | 3.4:+74509975 | None:intergenic |
| GCCTTTCCCTTGGTTTCGAA+TGG | 0.405870 | 3.4:-74509666 | MS.gene022308:CDS |
| TTCATGCTTGCATTAATCTC+TGG | 0.416369 | 3.4:-74509595 | MS.gene022308:intron |
| TGATACAGCTTTAAATTGTC+TGG | 0.419901 | 3.4:-74509779 | MS.gene022308:intron |
| GACAAGTCAAGAAATGGATA+TGG | 0.421335 | 3.4:+74509472 | None:intergenic |
| CGAAAAGCCAAAAGCCAGGC+AGG | 0.426327 | 3.4:+74511140 | None:intergenic |
| GAGGATGACAAGTCAAGAAA+TGG | 0.433463 | 3.4:+74509466 | None:intergenic |
| GCTCTCTTCAGCCTTTCCCT+TGG | 0.434934 | 3.4:-74509676 | MS.gene022308:intron |
| TAAAAGGAATTCACCCTGCC+TGG | 0.437629 | 3.4:-74511154 | MS.gene022308:CDS |
| CACTTGATTTCTTATGATGT+TGG | 0.439825 | 3.4:+74510367 | None:intergenic |
| TTGGCGAACAATAACTTCTT+CGG | 0.458839 | 3.4:+74510233 | None:intergenic |
| GTCTCAACAAGAAATGTTAG+TGG | 0.460047 | 3.4:-74511239 | MS.gene022308:CDS |
| CCTTTCCCTTGGTTTCGAAT+GGG | 0.468182 | 3.4:-74509665 | MS.gene022308:CDS |
| TTGATATGAGTCGGGGTAGC+GGG | 0.468763 | 3.4:+74509140 | None:intergenic |
| CTAACACATTGATATGAGTC+GGG | 0.484149 | 3.4:+74509132 | None:intergenic |
| TTTCTAACAGGCTCTCCTAA+AGG | 0.487904 | 3.4:-74511407 | MS.gene022308:CDS |
| TCTGATGCATTAGAACTTTG+TGG | 0.494592 | 3.4:+74510279 | None:intergenic |
| GTTATTGTTCGCCAACATGC+TGG | 0.506700 | 3.4:-74510225 | MS.gene022308:CDS |
| CAGGCTCTCCTAAAGGCTCA+TGG | 0.510113 | 3.4:-74511400 | MS.gene022308:CDS |
| AGAGTTATTGGATTAATTGG+AGG | 0.510956 | 3.4:-74511346 | MS.gene022308:CDS |
| CGCCAACATGCTGGAACTTG+GGG | 0.519334 | 3.4:-74510216 | MS.gene022308:CDS |
| TGCAAGCATGAACAATCCAT+TGG | 0.520315 | 3.4:+74509606 | None:intergenic |
| GATTTCTAGGTACTTTGCTG+TGG | 0.521399 | 3.4:-74509232 | MS.gene022308:intron |
| AACCCGAAAAGCCAAAAGCC+AGG | 0.523042 | 3.4:+74511136 | None:intergenic |
| ATACCAGAGTGGAGCATATG+AGG | 0.527124 | 3.4:+74509447 | None:intergenic |
| CTGATGCATTAGAACTTTGT+GGG | 0.528959 | 3.4:+74510280 | None:intergenic |
| ACTTGTGAATAGATAAATGC+AGG | 0.536058 | 3.4:-74510041 | MS.gene022308:intron |
| GTCAATGTTGTTGTTGATGG+AGG | 0.537253 | 3.4:-74511080 | MS.gene022308:CDS |
| GAGTTATTGGATTAATTGGA+GGG | 0.537811 | 3.4:-74511345 | MS.gene022308:CDS |
| TTAAAGCTGTATCACCTATG+AGG | 0.539460 | 3.4:+74509788 | None:intergenic |
| TCTAACACATTGATATGAGT+CGG | 0.542148 | 3.4:+74509131 | None:intergenic |
| TTACTGCACATTCCATGCTA+TGG | 0.562491 | 3.4:-74509207 | MS.gene022308:CDS |
| TGATAATAAGGTTGATAATG+TGG | 0.562805 | 3.4:-74510343 | MS.gene022308:CDS |
| CCCATTCGAAACCAAGGGAA+AGG | 0.571956 | 3.4:+74509665 | None:intergenic |
| GGATCAATACTGTCCATGCA+TGG | 0.577489 | 3.4:-74510396 | MS.gene022308:CDS |
| AGGCTCTCCTAAAGGCTCAT+GGG | 0.579776 | 3.4:-74511399 | MS.gene022308:CDS |
| ATTGATATGAGTCGGGGTAG+CGG | 0.581054 | 3.4:+74509139 | None:intergenic |
| AATAAGGTTGATAATGTGGA+TGG | 0.581138 | 3.4:-74510339 | MS.gene022308:CDS |
| AAAGTGAAAATACCATAGCA+TGG | 0.583624 | 3.4:+74509195 | None:intergenic |
| AAGTATCCCATTCGAAACCA+AGG | 0.584984 | 3.4:+74509659 | None:intergenic |
| CAACATCATAAGAAATCAAG+TGG | 0.586505 | 3.4:-74510366 | MS.gene022308:CDS |
| AACCCCAAGTTCCAGCATGT+TGG | 0.588542 | 3.4:+74510214 | None:intergenic |
| CATCCTCATATGCTCCACTC+TGG | 0.593145 | 3.4:-74509450 | MS.gene022308:intron |
| TAGTGGAAGAGAAAGAGAAG+CGG | 0.595008 | 3.4:-74511222 | MS.gene022308:CDS |
| GAAAAGCCAAAAGCCAGGCA+GGG | 0.595715 | 3.4:+74511141 | None:intergenic |
| AGTATCCCATTCGAAACCAA+GGG | 0.618643 | 3.4:+74509660 | None:intergenic |
| GTGGATGGAGATGCAGAGCA+AGG | 0.625282 | 3.4:-74510324 | MS.gene022308:CDS |
| GCGAACAATAACTTCTTCGG+AGG | 0.642088 | 3.4:+74510236 | None:intergenic |
| TAACACATTGATATGAGTCG+GGG | 0.681170 | 3.4:+74509133 | None:intergenic |
| ATGTTGGTAACATCCATGCA+TGG | 0.683290 | 3.4:+74510383 | None:intergenic |
| GAGTAAAGTTCATACCAGAG+TGG | 0.715233 | 3.4:+74509436 | None:intergenic |
| TGTACGAGGATGAAACCTGG+AGG | 0.758950 | 3.4:-74511184 | MS.gene022308:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGCAATTAATAATATTTT+AGG | - | chr3.4:74509633-74509652 | MS.gene022308:CDS | 10.0% |
| !!! | TTTGATTTTGATTTTTTTTA+TGG | - | chr3.4:74509955-74509974 | MS.gene022308:intron | 10.0% |
| !! | AAAATAGTTTATTACTTCAT+AGG | + | chr3.4:74511216-74511235 | None:intergenic | 15.0% |
| !! | AATACTATAATCAATATAAG+TGG | + | chr3.4:74510686-74510705 | None:intergenic | 15.0% |
| !! | GTATATATAGCATTATAATT+TGG | - | chr3.4:74509583-74509602 | MS.gene022308:intron | 15.0% |
| !!! | TAATAAACTATTTTAGAACT+CGG | - | chr3.4:74511222-74511241 | MS.gene022308:CDS | 15.0% |
| !!! | TATTTTTCAAATAATATTCC+AGG | - | chr3.4:74510351-74510370 | MS.gene022308:CDS | 15.0% |
| !!! | TTTTGTTTTGTTTTAAGATT+TGG | - | chr3.4:74509526-74509545 | MS.gene022308:intron | 15.0% |
| !! | AGAGATTATATAGTATATGA+TGG | + | chr3.4:74510086-74510105 | None:intergenic | 20.0% |
| !! | GAACAAAAACTAAAAAACAA+AGG | + | chr3.4:74510978-74510997 | None:intergenic | 20.0% |
| !! | TTATAATGCTATATATACAG+AGG | + | chr3.4:74509581-74509600 | None:intergenic | 20.0% |
| !!! | AATAAACTATTTTAGAACTC+GGG | - | chr3.4:74511223-74511242 | MS.gene022308:CDS | 20.0% |
| !!! | TTGATTATAGTATTCTTTTG+TGG | - | chr3.4:74510692-74510711 | MS.gene022308:intron | 20.0% |
| !!! | TTTTAAGATTTGGTATCTTT+TGG | - | chr3.4:74509536-74509555 | MS.gene022308:intron | 20.0% |
| ! | AAAATTGAAAAAACTGTACC+TGG | + | chr3.4:74510372-74510391 | None:intergenic | 25.0% |
| ! | AAATAAGAGACTTCAAAACT+TGG | - | chr3.4:74510652-74510671 | MS.gene022308:intron | 25.0% |
| ! | AAATATTGTCTGGCTATAAA+TGG | + | chr3.4:74509870-74509889 | None:intergenic | 25.0% |
| ! | AAGGCAATAACTTTCTTAAA+AGG | + | chr3.4:74509816-74509835 | None:intergenic | 25.0% |
| ! | ATTTGTCTTAACAGTCATAA+TGG | + | chr3.4:74509171-74509190 | None:intergenic | 25.0% |
| ! | GTTTAGATTGTAATCTTTGA+TGG | + | chr3.4:74510579-74510598 | None:intergenic | 25.0% |
| ! | TCTATGAACTCATTCATTTA+GGG | - | chr3.4:74510612-74510631 | MS.gene022308:intron | 25.0% |
| ! | TGTATGTACTTAAGTTCATT+TGG | - | chr3.4:74511259-74511278 | MS.gene022308:CDS | 25.0% |
| ! | TTCTATGAACTCATTCATTT+AGG | - | chr3.4:74510611-74510630 | MS.gene022308:intron | 25.0% |
| ! | TTTGTCTTAACAGTCATAAT+GGG | + | chr3.4:74509170-74509189 | None:intergenic | 25.0% |
| !! | AAATTCAGATATTTTGTACG+AGG | - | chr3.4:74509343-74509362 | MS.gene022308:intron | 25.0% |
| !! | TAATCTTTGATGGTTAGAAA+TGG | + | chr3.4:74510569-74510588 | None:intergenic | 25.0% |
| !! | TACTGATTAAACTTCAATGA+TGG | - | chr3.4:74510399-74510418 | MS.gene022308:CDS | 25.0% |
| !!! | AAAACTCTAGAACTAAAGAA+TGG | + | chr3.4:74511179-74511198 | None:intergenic | 25.0% |
| !!! | TGATAATAAGGTTGATAATG+TGG | - | chr3.4:74510198-74510217 | MS.gene022308:CDS | 25.0% |
| !!! | TTTTTATGGTTTCTGAAACA+AGG | - | chr3.4:74509969-74509988 | MS.gene022308:CDS | 25.0% |
| AAAGTGAAAATACCATAGCA+TGG | + | chr3.4:74511349-74511368 | None:intergenic | 30.0% | |
| AAGTCAATTATACAATCCAC+TGG | + | chr3.4:74510470-74510489 | None:intergenic | 30.0% | |
| ACTTGTGAATAGATAAATGC+AGG | - | chr3.4:74510500-74510519 | MS.gene022308:intron | 30.0% | |
| AGACAAATACACAGAGTTAT+TGG | - | chr3.4:74509183-74509202 | MS.gene022308:CDS | 30.0% | |
| AGAGTTATTGGATTAATTGG+AGG | - | chr3.4:74509195-74509214 | MS.gene022308:CDS | 30.0% | |
| ATCAGACCAAGAGAAAAATT+TGG | - | chr3.4:74510279-74510298 | MS.gene022308:CDS | 30.0% | |
| CAACATCATAAGAAATCAAG+TGG | - | chr3.4:74510175-74510194 | MS.gene022308:intron | 30.0% | |
| CACAGAGTTATTGGATTAAT+TGG | - | chr3.4:74509192-74509211 | MS.gene022308:CDS | 30.0% | |
| CACTTGATTTCTTATGATGT+TGG | + | chr3.4:74510177-74510196 | None:intergenic | 30.0% | |
| CTATGAACTCATTCATTTAG+GGG | - | chr3.4:74510613-74510632 | MS.gene022308:intron | 30.0% | |
| GAAATCAAGTGGTGATAATA+AGG | - | chr3.4:74510186-74510205 | MS.gene022308:intron | 30.0% | |
| GAGTTATTGGATTAATTGGA+GGG | - | chr3.4:74509196-74509215 | MS.gene022308:CDS | 30.0% | |
| GCTGCAATATCAATCATAAA+AGG | + | chr3.4:74510123-74510142 | None:intergenic | 30.0% | |
| TATACTTACCCCAAAGTAAA+AGG | + | chr3.4:74510014-74510033 | None:intergenic | 30.0% | |
| TATGAACTCATTCATTTAGG+GGG | - | chr3.4:74510614-74510633 | MS.gene022308:intron | 30.0% | |
| TCAGACCAAGAGAAAAATTT+GGG | - | chr3.4:74510280-74510299 | MS.gene022308:CDS | 30.0% | |
| TCTAACACATTGATATGAGT+CGG | + | chr3.4:74511413-74511432 | None:intergenic | 30.0% | |
| TTAGCTTCATGAATGATGTA+AGG | + | chr3.4:74509835-74509854 | None:intergenic | 30.0% | |
| TTATGATTGATATTGCAGCT+AGG | - | chr3.4:74510124-74510143 | MS.gene022308:intron | 30.0% | |
| TTCCACTGTTTGTGTTTATA+TGG | - | chr3.4:74510820-74510839 | MS.gene022308:intron | 30.0% | |
| TTCCATATAAACACAAACAG+TGG | + | chr3.4:74510825-74510844 | None:intergenic | 30.0% | |
| TTGGAAGAACATTATGAATG+AGG | - | chr3.4:74509555-74509574 | MS.gene022308:intron | 30.0% | |
| ! | ATGCTATGGTATTTTCACTT+TGG | - | chr3.4:74511348-74511367 | MS.gene022308:CDS | 30.0% |
| ! | ATTGTCAATGTTGTTGTTGA+TGG | - | chr3.4:74509458-74509477 | MS.gene022308:CDS | 30.0% |
| ! | CTTCAATCACCTTTTACTTT+GGG | - | chr3.4:74510002-74510021 | MS.gene022308:CDS | 30.0% |
| ! | TGACATATGTGATTTTCCAA+TGG | - | chr3.4:74510919-74510938 | MS.gene022308:intron | 30.0% |
| ! | TGCTATGGTATTTTCACTTT+GGG | - | chr3.4:74511349-74511368 | MS.gene022308:CDS | 30.0% |
| ! | TTCAATCACCTTTTACTTTG+GGG | - | chr3.4:74510003-74510022 | MS.gene022308:CDS | 30.0% |
| ! | TTTTCTCATCATTGCTTCTA+TGG | - | chr3.4:74509255-74509274 | MS.gene022308:intron | 30.0% |
| !! | AATAAGGTTGATAATGTGGA+TGG | - | chr3.4:74510202-74510221 | MS.gene022308:CDS | 30.0% |
| !! | TACTCACTGATTGTGTATTT+TGG | - | chr3.4:74510531-74510550 | MS.gene022308:intron | 30.0% |
| !! | TGATACAGCTTTAAATTGTC+TGG | - | chr3.4:74510762-74510781 | MS.gene022308:intron | 30.0% |
| !! | TTACTTTGGGGTAAGTATAA+AGG | - | chr3.4:74510015-74510034 | MS.gene022308:CDS | 30.0% |
| !!! | ATCAATGCTATTTTCCTCAT+AGG | - | chr3.4:74510739-74510758 | MS.gene022308:intron | 30.0% |
| !!! | GTCTTCTTGTTTTGAAAAAC+AGG | - | chr3.4:74511043-74511062 | MS.gene022308:intron | 30.0% |
| !!! | TTCTTGTTTTGAAAAACAGG+TGG | - | chr3.4:74511046-74511065 | MS.gene022308:intron | 30.0% |
| AATCACAAGCCATAGAAAAC+AGG | + | chr3.4:74511289-74511308 | None:intergenic | 35.0% | |
| CTAACACATTGATATGAGTC+GGG | + | chr3.4:74511412-74511431 | None:intergenic | 35.0% | |
| CTGATGCATTAGAACTTTGT+GGG | + | chr3.4:74510264-74510283 | None:intergenic | 35.0% | |
| CTTAACTACAAAAGCAGAGA+GGG | + | chr3.4:74509735-74509754 | None:intergenic | 35.0% | |
| GACAAGTCAAGAAATGGATA+TGG | + | chr3.4:74511072-74511091 | None:intergenic | 35.0% | |
| GCAAGAGTTGAAATATTGTC+TGG | + | chr3.4:74509880-74509899 | None:intergenic | 35.0% | |
| GTCTCAACAAGAAATGTTAG+TGG | - | chr3.4:74509302-74509321 | MS.gene022308:intron | 35.0% | |
| TAACACATTGATATGAGTCG+GGG | + | chr3.4:74511411-74511430 | None:intergenic | 35.0% | |
| TCTGATGCATTAGAACTTTG+TGG | + | chr3.4:74510265-74510284 | None:intergenic | 35.0% | |
| TTAAAGCTGTATCACCTATG+AGG | + | chr3.4:74510756-74510775 | None:intergenic | 35.0% | |
| TTCATGCTTGCATTAATCTC+TGG | - | chr3.4:74510946-74510965 | MS.gene022308:intron | 35.0% | |
| TTGGCGAACAATAACTTCTT+CGG | + | chr3.4:74510311-74510330 | None:intergenic | 35.0% | |
| TTTGCAGAAGATGATGAGAA+TGG | + | chr3.4:74511130-74511149 | None:intergenic | 35.0% | |
| ! | ATGGCTTGTGATTGATTTCT+AGG | - | chr3.4:74511296-74511315 | MS.gene022308:CDS | 35.0% |
| ! | GAATGGGATACTTTTGCTTA+TGG | - | chr3.4:74510892-74510911 | MS.gene022308:intron | 35.0% |
| ! | GCTTCAATCACCTTTTACTT+TGG | - | chr3.4:74510001-74510020 | MS.gene022308:CDS | 35.0% |
| ! | GGGTGAATTCCTTTTAAACA+AGG | + | chr3.4:74509383-74509402 | None:intergenic | 35.0% |
| ! | TAGTATTCTTTTGTGGCAGT+TGG | - | chr3.4:74510699-74510718 | MS.gene022308:intron | 35.0% |
| ! | TTTCGCGTTTATTGTGCTTT+TGG | - | chr3.4:74509427-74509446 | MS.gene022308:intron | 35.0% |
| !! | TTATGGTTTCTGAAACAAGG+TGG | - | chr3.4:74509972-74509991 | MS.gene022308:CDS | 35.0% |
| !! | TTTGGTGATCCTGTTTTCTA+TGG | - | chr3.4:74511277-74511296 | MS.gene022308:CDS | 35.0% |
| !!! | GGTTTTGCTTTGTGCTATTT+GGG | - | chr3.4:74509217-74509236 | MS.gene022308:CDS | 35.0% |
| AAGTATCCCATTCGAAACCA+AGG | + | chr3.4:74510885-74510904 | None:intergenic | 40.0% | |
| AGTATCCCATTCGAAACCAA+GGG | + | chr3.4:74510884-74510903 | None:intergenic | 40.0% | |
| CAAATGTTAGCTCAAACCAG+TGG | - | chr3.4:74510451-74510470 | MS.gene022308:intron | 40.0% | |
| CCTTAACTACAAAAGCAGAG+AGG | + | chr3.4:74509736-74509755 | None:intergenic | 40.0% | |
| GAGGATGACAAGTCAAGAAA+TGG | + | chr3.4:74511078-74511097 | None:intergenic | 40.0% | |
| GAGTAAAGTTCATACCAGAG+TGG | + | chr3.4:74511108-74511127 | None:intergenic | 40.0% | |
| TAATGTACCTTGCTAGCTGA+AGG | - | chr3.4:74509682-74509701 | MS.gene022308:intron | 40.0% | |
| TAGTGGAAGAGAAAGAGAAG+CGG | - | chr3.4:74509319-74509338 | MS.gene022308:intron | 40.0% | |
| TCATTTAGGGGGTTTCTCTT+AGG | - | chr3.4:74510625-74510644 | MS.gene022308:intron | 40.0% | |
| TGCAAGCATGAACAATCCAT+TGG | + | chr3.4:74510938-74510957 | None:intergenic | 40.0% | |
| TTACTGCACATTCCATGCTA+TGG | - | chr3.4:74511334-74511353 | MS.gene022308:CDS | 40.0% | |
| TTTCTAACAGGCTCTCCTAA+AGG | - | chr3.4:74509134-74509153 | MS.gene022308:CDS | 40.0% | |
| ! | AGGCTCCCAAATTTTTCTCT+TGG | + | chr3.4:74510288-74510307 | None:intergenic | 40.0% |
| ! | GATTTCTAGGTACTTTGCTG+TGG | - | chr3.4:74511309-74511328 | MS.gene022308:CDS | 40.0% |
| ! | GTCAATGTTGTTGTTGATGG+AGG | - | chr3.4:74509461-74509480 | MS.gene022308:CDS | 40.0% |
| ! | TTTTGTACGAGGATGAAACC+TGG | - | chr3.4:74509354-74509373 | MS.gene022308:intron | 40.0% |
| !! | ATGTTGGTAACATCCATGCA+TGG | + | chr3.4:74510161-74510180 | None:intergenic | 40.0% |
| !! | CCTCTCTGCTTTTGTAGTTA+AGG | - | chr3.4:74509733-74509752 | MS.gene022308:intron | 40.0% |
| !! | GGGTTTTGCTTTGTGCTATT+TGG | - | chr3.4:74509216-74509235 | MS.gene022308:CDS | 40.0% |
| ATACCAGAGTGGAGCATATG+AGG | + | chr3.4:74511097-74511116 | None:intergenic | 45.0% | |
| ATGTGTTCCTTCAGCTAGCA+AGG | + | chr3.4:74509692-74509711 | None:intergenic | 45.0% | |
| ATTGATATGAGTCGGGGTAG+CGG | + | chr3.4:74511405-74511424 | None:intergenic | 45.0% | |
| CCTTTCCCTTGGTTTCGAAT+GGG | - | chr3.4:74510876-74510895 | MS.gene022308:intron | 45.0% | |
| GAAAGGCTGAAGAGAGCAAA+AGG | + | chr3.4:74510862-74510881 | None:intergenic | 45.0% | |
| GCGAACAATAACTTCTTCGG+AGG | + | chr3.4:74510308-74510327 | None:intergenic | 45.0% | |
| GGATCAATACTGTCCATGCA+TGG | - | chr3.4:74510145-74510164 | MS.gene022308:intron | 45.0% | |
| GTTATTGTTCGCCAACATGC+TGG | - | chr3.4:74510316-74510335 | MS.gene022308:CDS | 45.0% | |
| TAAAAGGAATTCACCCTGCC+TGG | - | chr3.4:74509387-74509406 | MS.gene022308:intron | 45.0% | |
| ! | TCCTTTTAAACAAGGCCTCC+AGG | + | chr3.4:74509375-74509394 | None:intergenic | 45.0% |
| !! | ACCTGGAGGCCTTGTTTAAA+AGG | - | chr3.4:74509371-74509390 | MS.gene022308:intron | 45.0% |
| AACCCCAAGTTCCAGCATGT+TGG | + | chr3.4:74510330-74510349 | None:intergenic | 50.0% | |
| AACCCGAAAAGCCAAAAGCC+AGG | + | chr3.4:74509408-74509427 | None:intergenic | 50.0% | |
| AGGCTCTCCTAAAGGCTCAT+GGG | - | chr3.4:74509142-74509161 | MS.gene022308:CDS | 50.0% | |
| ATGGGTTCCCATGAGCCTTT+AGG | + | chr3.4:74509152-74509171 | None:intergenic | 50.0% | |
| CATCCTCATATGCTCCACTC+TGG | - | chr3.4:74511091-74511110 | MS.gene022308:CDS | 50.0% | |
| CCCATTCGAAACCAAGGGAA+AGG | + | chr3.4:74510879-74510898 | None:intergenic | 50.0% | |
| GAAAAGCCAAAAGCCAGGCA+GGG | + | chr3.4:74509403-74509422 | None:intergenic | 50.0% | |
| GCCTTTCCCTTGGTTTCGAA+TGG | - | chr3.4:74510875-74510894 | MS.gene022308:intron | 50.0% | |
| TCGCCAACATGCTGGAACTT+GGG | - | chr3.4:74510324-74510343 | MS.gene022308:CDS | 50.0% | |
| TGTACGAGGATGAAACCTGG+AGG | - | chr3.4:74509357-74509376 | MS.gene022308:intron | 50.0% | |
| TTCGCCAACATGCTGGAACT+TGG | - | chr3.4:74510323-74510342 | MS.gene022308:CDS | 50.0% | |
| TTGATATGAGTCGGGGTAGC+GGG | + | chr3.4:74511404-74511423 | None:intergenic | 50.0% | |
| !! | AATTCACCCTGCCTGGCTTT+TGG | - | chr3.4:74509394-74509413 | MS.gene022308:intron | 50.0% |
| !!! | CTGCCTGGCTTTTGGCTTTT+CGG | - | chr3.4:74509402-74509421 | MS.gene022308:intron | 50.0% |
| !!! | TGCCTGGCTTTTGGCTTTTC+GGG | - | chr3.4:74509403-74509422 | MS.gene022308:intron | 50.0% |
| CAGGCTCTCCTAAAGGCTCA+TGG | - | chr3.4:74509141-74509160 | MS.gene022308:CDS | 55.0% | |
| CGAAAAGCCAAAAGCCAGGC+AGG | + | chr3.4:74509404-74509423 | None:intergenic | 55.0% | |
| CGCCAACATGCTGGAACTTG+GGG | - | chr3.4:74510325-74510344 | MS.gene022308:CDS | 55.0% | |
| GCTCTCTTCAGCCTTTCCCT+TGG | - | chr3.4:74510865-74510884 | MS.gene022308:intron | 55.0% | |
| GTGGATGGAGATGCAGAGCA+AGG | - | chr3.4:74510217-74510236 | MS.gene022308:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 74509128 | 74511435 | 74509128 | ID=MS.gene022308 |
| chr3.4 | mRNA | 74509128 | 74511435 | 74509128 | ID=MS.gene022308.t1;Parent=MS.gene022308 |
| chr3.4 | exon | 74511056 | 74511435 | 74511056 | ID=MS.gene022308.t1.exon1;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74511056 | 74511435 | 74511056 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| chr3.4 | exon | 74510539 | 74510572 | 74510539 | ID=MS.gene022308.t1.exon2;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74510539 | 74510572 | 74510539 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| chr3.4 | exon | 74510191 | 74510421 | 74510191 | ID=MS.gene022308.t1.exon3;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74510191 | 74510421 | 74510191 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| chr3.4 | exon | 74509962 | 74510051 | 74509962 | ID=MS.gene022308.t1.exon4;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74509962 | 74510051 | 74509962 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| chr3.4 | exon | 74509780 | 74509845 | 74509780 | ID=MS.gene022308.t1.exon5;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74509780 | 74509845 | 74509780 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| chr3.4 | exon | 74509596 | 74509687 | 74509596 | ID=MS.gene022308.t1.exon6;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74509596 | 74509687 | 74509596 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| chr3.4 | exon | 74509451 | 74509498 | 74509451 | ID=MS.gene022308.t1.exon7;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74509451 | 74509498 | 74509451 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| chr3.4 | exon | 74509128 | 74509245 | 74509128 | ID=MS.gene022308.t1.exon8;Parent=MS.gene022308.t1 |
| chr3.4 | CDS | 74509128 | 74509245 | 74509128 | ID=cds.MS.gene022308.t1;Parent=MS.gene022308.t1 |
| Gene Sequence |
| Protein sequence |
