Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022463.t1 | XP_013460928.1 | 97.3 | 622 | 15 | 1 | 1 | 620 | 1 | 622 | 0.00E+00 | 1280 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022463.t1 | Q5MAU8 | 72.8 | 611 | 162 | 3 | 10 | 620 | 4 | 610 | 1.1e-275 | 950.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022463.t1 | A0A072UZJ4 | 97.3 | 622 | 15 | 1 | 1 | 620 | 1 | 622 | 0.0e+00 | 1280.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene022463 | MS.gene054724 | PPI |
MS.gene022463 | MS.gene98060 | PPI |
MS.gene063970 | MS.gene022463 | PPI |
MS.gene022463 | MS.gene69485 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022463.t1 | MTR_3g074930 | 97.267 | 622 | 15 | 1 | 1 | 620 | 1 | 622 | 0.0 | 1264 |
MS.gene022463.t1 | MTR_3g074930 | 96.184 | 629 | 15 | 2 | 1 | 620 | 1 | 629 | 0.0 | 1258 |
MS.gene022463.t1 | MTR_4g103520 | 77.435 | 616 | 134 | 1 | 10 | 620 | 11 | 626 | 0.0 | 1032 |
MS.gene022463.t1 | MTR_4g103520 | 80.146 | 549 | 109 | 0 | 72 | 620 | 1 | 549 | 0.0 | 955 |
MS.gene022463.t1 | MTR_5g045600 | 71.939 | 588 | 164 | 1 | 33 | 620 | 32 | 618 | 0.0 | 906 |
MS.gene022463.t1 | MTR_8g063080 | 69.130 | 609 | 183 | 2 | 12 | 620 | 8 | 611 | 0.0 | 902 |
MS.gene022463.t1 | MTR_3g074970 | 84.076 | 471 | 30 | 2 | 149 | 619 | 100 | 525 | 0.0 | 819 |
MS.gene022463.t1 | MTR_3g074970 | 96.875 | 96 | 3 | 0 | 518 | 613 | 3 | 98 | 4.24e-55 | 196 |
MS.gene022463.t1 | MTR_3g074960 | 71.687 | 498 | 75 | 5 | 1 | 475 | 1 | 455 | 0.0 | 702 |
MS.gene022463.t1 | MTR_4g037670 | 36.014 | 572 | 308 | 16 | 68 | 601 | 83 | 634 | 2.41e-110 | 345 |
MS.gene022463.t1 | MTR_1g052505 | 35.714 | 560 | 303 | 17 | 81 | 601 | 74 | 615 | 3.54e-105 | 331 |
MS.gene022463.t1 | MTR_4g082930 | 29.256 | 605 | 349 | 25 | 45 | 599 | 5 | 580 | 6.32e-59 | 209 |
MS.gene022463.t1 | MTR_4g082940 | 28.242 | 563 | 314 | 23 | 86 | 599 | 45 | 566 | 2.07e-51 | 188 |
MS.gene022463.t1 | MTR_6g005650 | 82.051 | 78 | 14 | 0 | 190 | 267 | 10 | 87 | 1.27e-37 | 142 |
MS.gene022463.t1 | MTR_1g060360 | 27.361 | 413 | 230 | 15 | 190 | 594 | 57 | 407 | 9.86e-30 | 122 |
MS.gene022463.t1 | MTR_7g104330 | 26.392 | 413 | 226 | 15 | 190 | 590 | 65 | 411 | 5.99e-29 | 120 |
MS.gene022463.t1 | MTR_7g104360 | 26.161 | 409 | 233 | 14 | 190 | 590 | 58 | 405 | 5.16e-28 | 117 |
MS.gene022463.t1 | MTR_4g115670 | 26.374 | 455 | 271 | 16 | 168 | 603 | 42 | 451 | 1.02e-26 | 114 |
MS.gene022463.t1 | MTR_3g051240 | 25.986 | 431 | 247 | 14 | 190 | 614 | 54 | 418 | 3.52e-25 | 108 |
MS.gene022463.t1 | MTR_6g013050 | 27.053 | 414 | 186 | 16 | 247 | 590 | 146 | 513 | 1.67e-24 | 108 |
MS.gene022463.t1 | MTR_6g013050 | 28.097 | 331 | 166 | 11 | 247 | 548 | 146 | 433 | 5.53e-23 | 103 |
MS.gene022463.t1 | MTR_5g092360 | 24.390 | 451 | 263 | 17 | 174 | 614 | 42 | 424 | 2.78e-22 | 100 |
MS.gene022463.t1 | MTR_7g056403 | 27.879 | 330 | 167 | 10 | 247 | 548 | 146 | 432 | 3.32e-22 | 101 |
MS.gene022463.t1 | MTR_0188s0020 | 25.824 | 364 | 223 | 13 | 247 | 596 | 119 | 449 | 2.22e-21 | 98.2 |
MS.gene022463.t1 | MTR_3g083810 | 24.235 | 425 | 208 | 14 | 247 | 601 | 147 | 527 | 6.39e-21 | 97.1 |
MS.gene022463.t1 | MTR_3g083820 | 25.982 | 331 | 172 | 11 | 247 | 548 | 147 | 433 | 1.52e-19 | 92.8 |
MS.gene022463.t1 | MTR_1g112630 | 24.821 | 419 | 249 | 19 | 191 | 591 | 70 | 440 | 2.13e-19 | 92.0 |
MS.gene022463.t1 | MTR_4g037105 | 25.843 | 356 | 223 | 15 | 247 | 591 | 113 | 438 | 3.70e-19 | 91.3 |
MS.gene022463.t1 | MTR_7g405800 | 93.333 | 30 | 2 | 0 | 233 | 262 | 1 | 30 | 4.81e-14 | 72.4 |
MS.gene022463.t1 | MTR_2g020270 | 69.767 | 43 | 13 | 0 | 120 | 162 | 33 | 75 | 7.02e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022463.t1 | AT5G50400 | 72.831 | 611 | 162 | 3 | 10 | 620 | 4 | 610 | 0.0 | 944 |
MS.gene022463.t1 | AT4G24890 | 72.697 | 597 | 162 | 1 | 24 | 620 | 19 | 614 | 0.0 | 926 |
MS.gene022463.t1 | AT1G13750 | 66.174 | 609 | 205 | 1 | 12 | 620 | 5 | 612 | 0.0 | 863 |
MS.gene022463.t1 | AT5G50400 | 77.220 | 518 | 117 | 1 | 103 | 620 | 22 | 538 | 0.0 | 862 |
MS.gene022463.t1 | AT1G13900 | 30.066 | 602 | 322 | 27 | 51 | 599 | 22 | 577 | 2.76e-59 | 210 |
MS.gene022463.t1 | AT2G03450 | 29.180 | 610 | 329 | 26 | 46 | 599 | 15 | 577 | 2.01e-58 | 207 |
MS.gene022463.t1 | AT3G52780 | 26.682 | 431 | 242 | 16 | 173 | 590 | 36 | 405 | 2.88e-28 | 118 |
MS.gene022463.t1 | AT3G52810 | 26.364 | 440 | 247 | 18 | 161 | 590 | 36 | 408 | 3.89e-26 | 112 |
MS.gene022463.t1 | AT3G52820 | 27.689 | 437 | 245 | 19 | 161 | 590 | 32 | 404 | 4.83e-25 | 108 |
MS.gene022463.t1 | AT4G13700 | 27.576 | 330 | 169 | 12 | 247 | 548 | 140 | 427 | 3.01e-24 | 106 |
MS.gene022463.t1 | AT3G52780 | 28.367 | 349 | 195 | 13 | 173 | 514 | 36 | 336 | 4.62e-24 | 104 |
MS.gene022463.t1 | AT5G34850 | 25.745 | 369 | 232 | 12 | 247 | 603 | 112 | 450 | 8.11e-23 | 102 |
MS.gene022463.t1 | AT3G20500 | 29.348 | 276 | 167 | 9 | 321 | 590 | 150 | 403 | 1.31e-22 | 101 |
MS.gene022463.t1 | AT2G27190 | 26.648 | 364 | 210 | 13 | 247 | 591 | 118 | 443 | 3.16e-22 | 100 |
MS.gene022463.t1 | AT4G36350 | 25.137 | 366 | 214 | 13 | 247 | 592 | 114 | 439 | 1.29e-21 | 99.0 |
MS.gene022463.t1 | AT1G56360 | 23.741 | 417 | 260 | 16 | 192 | 592 | 65 | 439 | 1.21e-20 | 95.9 |
MS.gene022463.t1 | AT3G07130 | 25.455 | 330 | 175 | 10 | 247 | 548 | 140 | 426 | 7.84e-20 | 93.6 |
MS.gene022463.t1 | AT4G13700 | 27.491 | 291 | 151 | 11 | 247 | 509 | 140 | 398 | 1.92e-19 | 91.7 |
MS.gene022463.t1 | AT2G18130 | 26.429 | 280 | 177 | 10 | 339 | 603 | 168 | 433 | 5.49e-16 | 81.3 |
MS.gene022463.t1 | AT3G07130 | 24.832 | 298 | 163 | 9 | 247 | 516 | 140 | 404 | 1.89e-15 | 80.1 |
MS.gene022463.t1 | AT2G32770 | 22.170 | 424 | 201 | 16 | 247 | 590 | 149 | 523 | 3.48e-14 | 76.3 |
MS.gene022463.t1 | AT2G32770 | 23.631 | 347 | 171 | 14 | 247 | 548 | 68 | 365 | 1.71e-13 | 73.6 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAGATGCATTTACCTTTAT+TGG | 0.115393 | 3.2:-67401161 | None:intergenic |
TTTCAAGATAAACATGATTT+TGG | 0.169428 | 3.2:+67396487 | MS.gene022463:CDS |
TTGCAGCGTGTTATCATATT+TGG | 0.181117 | 3.2:+67402308 | MS.gene022463:CDS |
AGTATTTATACCTGATAAAT+AGG | 0.182135 | 3.2:-67403525 | None:intergenic |
TATTTGGCCAAAGTTCTTTA+AGG | 0.186309 | 3.2:-67402082 | None:intergenic |
TACCTTAATGCCAAGCAAAA+AGG | 0.222836 | 3.2:-67396645 | None:intergenic |
TCACAACAGCACCTCCTATT+TGG | 0.224450 | 3.2:+67403729 | MS.gene022463:CDS |
CAGTCTTCATTAGTTGGTTC+TGG | 0.230728 | 3.2:-67399968 | None:intergenic |
TAATATAACTCACCAGAATT+TGG | 0.238636 | 3.2:-67402866 | None:intergenic |
GAGATGCATTTACCTTTATT+GGG | 0.268683 | 3.2:-67401160 | None:intergenic |
TGTATCTGCTTTCCACCCTT+TGG | 0.273229 | 3.2:-67401814 | None:intergenic |
TGCAGGTATGCAACAGATTA+TGG | 0.280718 | 3.2:+67403222 | MS.gene022463:intron |
CTGAATGCGTACCTCATATT+TGG | 0.281305 | 3.2:-67402098 | None:intergenic |
GCGAACCTTGCTATCATATA+TGG | 0.299475 | 3.2:-67402636 | None:intergenic |
GTATCTGCTTTCCACCCTTT+GGG | 0.300850 | 3.2:-67401813 | None:intergenic |
ATTGGGGCTGAGCATGTATA+TGG | 0.313154 | 3.2:-67401143 | None:intergenic |
CACAAACTTGAGGATGGGTT+TGG | 0.313558 | 3.2:+67396526 | MS.gene022463:CDS |
TTCTATGACACTCCAGATTC+AGG | 0.324023 | 3.2:+67402787 | MS.gene022463:CDS |
TATCTGATGGTTCTTATGTA+TGG | 0.326736 | 3.2:+67402237 | MS.gene022463:CDS |
GGCACACTCTTTCATAGTTA+TGG | 0.347057 | 3.2:-67403503 | None:intergenic |
CGCGGATATACAGGTGCTTT+AGG | 0.348283 | 3.2:-67401540 | None:intergenic |
TTGGGTGATATGAATGGAAT+TGG | 0.353720 | 3.2:+67396545 | MS.gene022463:CDS |
ATATGTTACTTCAAGTTTGC+AGG | 0.354348 | 3.2:-67400007 | None:intergenic |
CCACATTCTCCACCTGAATC+TGG | 0.355363 | 3.2:-67402799 | None:intergenic |
AGCTGTACCATTCGTGGAAT+GGG | 0.357959 | 3.2:+67401789 | MS.gene022463:CDS |
CTGCACGCTGATTGATCAAT+TGG | 0.365926 | 3.2:-67401321 | None:intergenic |
AGTCTTCATTAGTTGGTTCT+GGG | 0.366107 | 3.2:-67399967 | None:intergenic |
CATGGGAAGGGAAAGTTTGC+AGG | 0.381419 | 3.2:+67403434 | MS.gene022463:CDS |
CATTACTCTGGCACTGTGAA+TGG | 0.385329 | 3.2:+67403659 | MS.gene022463:CDS |
AAGAGTGTGCCCTATTTATC+AGG | 0.390964 | 3.2:+67403515 | MS.gene022463:CDS |
ACCGTTGGTTGGCGTGATCC+TGG | 0.393330 | 3.2:+67402041 | MS.gene022463:CDS |
CAAGTTTCCTTAAAGAACTT+TGG | 0.396795 | 3.2:+67402075 | MS.gene022463:CDS |
ACAAACTTGAGGATGGGTTT+GGG | 0.396830 | 3.2:+67396527 | MS.gene022463:CDS |
CTGAGAACAAAGCCAAATTC+TGG | 0.397715 | 3.2:+67402854 | MS.gene022463:CDS |
CACGTTGTTGTCGGCGGAGG+GGG | 0.400892 | 3.2:+67403689 | MS.gene022463:CDS |
TCATAGAAGGATCCTGAGTT+TGG | 0.403373 | 3.2:-67402772 | None:intergenic |
TACATGCTCAGCCCCAATAA+AGG | 0.410712 | 3.2:+67401148 | MS.gene022463:CDS |
CCAACCCAGTCTTCATTAGT+TGG | 0.419485 | 3.2:-67399974 | None:intergenic |
CTGCAAACTTTCCCTTCCCA+TGG | 0.420595 | 3.2:-67403433 | None:intergenic |
TCCCTGAAAATACTCCAAAT+AGG | 0.422376 | 3.2:-67403743 | None:intergenic |
AAGAACTTTGGCCAAATATG+AGG | 0.423481 | 3.2:+67402087 | MS.gene022463:CDS |
ATCTCTATAGTCCCTGGAAA+TGG | 0.436173 | 3.2:-67403864 | None:intergenic |
AATTTGGCTTTGTTCTCAGC+AGG | 0.439009 | 3.2:-67402850 | None:intergenic |
CCCAGGTACACCTACAGGTT+AGG | 0.439864 | 3.2:+67402206 | MS.gene022463:intron |
CTTGGCATACCAATCATTAG+AGG | 0.440011 | 3.2:-67403391 | None:intergenic |
TGAGCAAGGCGCGGATATAC+AGG | 0.446591 | 3.2:-67401549 | None:intergenic |
GGGAAAGTTTGCAGGGACTT+TGG | 0.448457 | 3.2:+67403442 | MS.gene022463:CDS |
TGAATCTGGAGTGTCATAGA+AGG | 0.450964 | 3.2:-67402785 | None:intergenic |
GGAACAATTCACGTTGTTGT+CGG | 0.459354 | 3.2:+67403680 | MS.gene022463:CDS |
CTCAGCAGGGTAATAGTACA+TGG | 0.467918 | 3.2:-67402836 | None:intergenic |
GTTCTTATGTATGGAGTAAG+AGG | 0.471018 | 3.2:+67402246 | MS.gene022463:CDS |
TTCAAGGCATCTCCATATCC+TGG | 0.471056 | 3.2:+67402275 | MS.gene022463:CDS |
CTCTTGAAATGAACCCTCCT+TGG | 0.472869 | 3.2:-67403409 | None:intergenic |
AAGTGAACCAGGTTGGTAAT+CGG | 0.475132 | 3.2:-67402475 | None:intergenic |
TTCGTGGAATGGGGCCCAAA+GGG | 0.477423 | 3.2:+67401799 | MS.gene022463:CDS |
ATACTTTGGATTGGAGTGGT+TGG | 0.479524 | 3.2:-67401269 | None:intergenic |
GTTCTTCAGGCGGAGCGTGA+TGG | 0.480034 | 3.2:+67402438 | MS.gene022463:intron |
CAGGGACTATAGAGATGTCT+TGG | 0.482107 | 3.2:+67403871 | MS.gene022463:CDS |
AAGTGAAGCTGTACCATTCG+TGG | 0.486057 | 3.2:+67401783 | MS.gene022463:CDS |
TTAGGGCATTTCCTATCTGA+TGG | 0.486535 | 3.2:+67402224 | MS.gene022463:CDS |
GTATATCCGCGCCTTGCTCA+TGG | 0.487526 | 3.2:+67401552 | MS.gene022463:CDS |
TCGGTTACTCCTCTAATGAT+TGG | 0.490311 | 3.2:+67403382 | MS.gene022463:CDS |
CAAGAAAAGTAGTGATGGAA+AGG | 0.490848 | 3.2:+67403826 | MS.gene022463:CDS |
AAGCTGTACCATTCGTGGAA+TGG | 0.491248 | 3.2:+67401788 | MS.gene022463:CDS |
TACACCCAACCCCGGTGGCA+AGG | 0.491687 | 3.2:+67401112 | MS.gene022463:CDS |
GTATTTATACCTGATAAATA+GGG | 0.494603 | 3.2:-67403524 | None:intergenic |
CAGAAATATAAAGTAGACAT+TGG | 0.495478 | 3.2:+67403465 | MS.gene022463:CDS |
ATTCACGTTGTTGTCGGCGG+AGG | 0.497357 | 3.2:+67403686 | MS.gene022463:CDS |
CAGAACCAACTAATGAAGAC+TGG | 0.498767 | 3.2:+67399969 | MS.gene022463:CDS |
AGAACTGTGGAGAGCAAGAA+TGG | 0.501966 | 3.2:-67396603 | None:intergenic |
TTCTTCACAAACTTGAGGAT+GGG | 0.502726 | 3.2:+67396521 | MS.gene022463:CDS |
TTCACGTTGTTGTCGGCGGA+GGG | 0.503739 | 3.2:+67403687 | MS.gene022463:CDS |
GGAGATCTGCCATATGCAAA+TGG | 0.505321 | 3.2:+67402555 | MS.gene022463:CDS |
AGCAAGAATGGTCTTGTGAA+TGG | 0.506048 | 3.2:-67396591 | None:intergenic |
ATGGGTTTGGGTGATATGAA+TGG | 0.507250 | 3.2:+67396539 | MS.gene022463:CDS |
ACACCCAACCCCGGTGGCAA+GGG | 0.510129 | 3.2:+67401113 | MS.gene022463:CDS |
TGTCTAGATCATTGATGAGC+TGG | 0.510281 | 3.2:-67402509 | None:intergenic |
TGCAAACTTTCCCTTCCCAT+GGG | 0.510474 | 3.2:-67403432 | None:intergenic |
TGAATGGCAATCTTTGACAA+TGG | 0.514640 | 3.2:-67396575 | None:intergenic |
TTTCTTCACAAACTTGAGGA+TGG | 0.517931 | 3.2:+67396520 | MS.gene022463:CDS |
ATACATAAGAACCATCAGAT+AGG | 0.518022 | 3.2:-67402235 | None:intergenic |
GAGTAAGAGGTATTCATTCA+AGG | 0.520098 | 3.2:+67402259 | MS.gene022463:CDS |
TTCGAAATTGCCACAAGTCT+AGG | 0.523478 | 3.2:-67401498 | None:intergenic |
GTGGAAATCATGAACGTGAT+TGG | 0.524304 | 3.2:+67402749 | MS.gene022463:intron |
CCAGGTACACCTACAGGTTA+GGG | 0.524336 | 3.2:+67402207 | MS.gene022463:intron |
AAGCAGATACAATCTGCTGC+TGG | 0.527038 | 3.2:+67401826 | MS.gene022463:CDS |
GCCTTGCTCATGGAAAATCT+TGG | 0.534991 | 3.2:+67401562 | MS.gene022463:CDS |
CACCCAACCCCGGTGGCAAG+GGG | 0.537156 | 3.2:+67401114 | MS.gene022463:CDS |
TGTTATCATATTTGGTGACA+TGG | 0.540361 | 3.2:+67402316 | MS.gene022463:CDS |
TAATAGTACATGGTTTCTGC+AGG | 0.541874 | 3.2:-67402826 | None:intergenic |
CCAGATTCAGGTGGAGAATG+TGG | 0.543017 | 3.2:+67402799 | MS.gene022463:CDS |
AACCTGCGCGAACCGTTGGT+TGG | 0.545040 | 3.2:+67402030 | MS.gene022463:CDS |
GTGGAATGGGGCCCAAAGGG+TGG | 0.547755 | 3.2:+67401802 | MS.gene022463:CDS |
GTCTTCATTAGTTGGTTCTG+GGG | 0.549003 | 3.2:-67399966 | None:intergenic |
TTTGGGCCCCATTCCACGAA+TGG | 0.553417 | 3.2:-67401796 | None:intergenic |
GGGTTCATTTCAAGAGCCCA+TGG | 0.554005 | 3.2:+67403416 | MS.gene022463:CDS |
GTCTTGGCCTGTGTGCATGA+TGG | 0.554283 | 3.2:+67403887 | MS.gene022463:CDS |
CATATTTGGTGACATGGGAA+AGG | 0.554850 | 3.2:+67402322 | MS.gene022463:CDS |
CTCTAATGATTGGTATGCCA+AGG | 0.554950 | 3.2:+67403392 | MS.gene022463:CDS |
TATGTCATATCCACTTGTCC+AGG | 0.562397 | 3.2:-67401761 | None:intergenic |
TAGCAGACAGTGAACATGAC+TGG | 0.563197 | 3.2:+67403262 | MS.gene022463:CDS |
ATTTCAAGAGCCCATGGGAA+GGG | 0.565074 | 3.2:+67403422 | MS.gene022463:CDS |
CGCCAACCAACGGTTCGCGC+AGG | 0.566020 | 3.2:-67402032 | None:intergenic |
GAGATGTATCCATTTGCATA+TGG | 0.566529 | 3.2:-67402564 | None:intergenic |
CAAGACATCTCTATAGTCCC+TGG | 0.567071 | 3.2:-67403870 | None:intergenic |
GAACGTGATTGGCCAAACTC+AGG | 0.567592 | 3.2:+67402760 | MS.gene022463:CDS |
ATTCGTGGAATGGGGCCCAA+AGG | 0.569815 | 3.2:+67401798 | MS.gene022463:CDS |
AATGACAGATGACAGTTACC+TGG | 0.569926 | 3.2:+67401743 | MS.gene022463:intron |
GAATATGCCGATTACCAACC+TGG | 0.571062 | 3.2:+67402468 | MS.gene022463:CDS |
GGTGAACCTGCGCGAACCGT+TGG | 0.574966 | 3.2:+67402026 | MS.gene022463:intron |
AGATGCATTTACCTTTATTG+GGG | 0.582539 | 3.2:-67401159 | None:intergenic |
GTTATCATATTTGGTGACAT+GGG | 0.582757 | 3.2:+67402317 | MS.gene022463:CDS |
TCACGTTGTTGTCGGCGGAG+GGG | 0.582788 | 3.2:+67403688 | MS.gene022463:CDS |
AGTGAACATGACTGGAGAGA+AGG | 0.583434 | 3.2:+67403270 | MS.gene022463:CDS |
GAGTACAAGAAAAGTAGTGA+TGG | 0.585752 | 3.2:+67403821 | MS.gene022463:CDS |
ATGACAGTTACCTGGACAAG+TGG | 0.589057 | 3.2:+67401751 | MS.gene022463:CDS |
ACCAGGATCACGCCAACCAA+CGG | 0.589362 | 3.2:-67402042 | None:intergenic |
AGAATGGGTGACAGTAGAAG+TGG | 0.592801 | 3.2:+67399940 | MS.gene022463:CDS |
CATTTCAAGAGCCCATGGGA+AGG | 0.593257 | 3.2:+67403421 | MS.gene022463:CDS |
CCAACTAATGAAGACTGGGT+TGG | 0.597652 | 3.2:+67399974 | MS.gene022463:CDS |
TTCAATCGTAACAGCTTGTG+TGG | 0.602832 | 3.2:+67401859 | MS.gene022463:CDS |
TCCACCTGAAAATAGTGCAA+AGG | 0.604263 | 3.2:-67401350 | None:intergenic |
TTTGCAGCACATCGCCCACT+CGG | 0.606514 | 3.2:+67403363 | MS.gene022463:CDS |
CATATGGCAGATCTCCTATG+TGG | 0.608314 | 3.2:-67402548 | None:intergenic |
CTGAAAATACTCCAAATAGG+AGG | 0.610154 | 3.2:-67403740 | None:intergenic |
AGTATTGCAGCCTAGACTTG+TGG | 0.611224 | 3.2:+67401488 | MS.gene022463:intron |
CTCACAACCATCATGCACAC+AGG | 0.611589 | 3.2:-67403894 | None:intergenic |
GCAGGGTGAGGATACAGAAT+GGG | 0.612759 | 3.2:+67399925 | MS.gene022463:intron |
GGTTCATTTCAAGAGCCCAT+GGG | 0.615886 | 3.2:+67403417 | MS.gene022463:CDS |
TGTGTTTCTTCACAAACTTG+AGG | 0.618013 | 3.2:+67396516 | MS.gene022463:CDS |
ACAATTCACGTTGTTGTCGG+CGG | 0.619258 | 3.2:+67403683 | MS.gene022463:CDS |
ACATGACTGGAGAGAAGGAT+CGG | 0.623007 | 3.2:+67403275 | MS.gene022463:CDS |
GCTGTACCATTCGTGGAATG+GGG | 0.624816 | 3.2:+67401790 | MS.gene022463:CDS |
AATGATTGGTATGCCAAGGA+GGG | 0.625443 | 3.2:+67403396 | MS.gene022463:CDS |
AAGTTCCATATATGATAGCA+AGG | 0.626247 | 3.2:+67402631 | MS.gene022463:CDS |
ATTTGGCTTTGTTCTCAGCA+GGG | 0.626371 | 3.2:-67402849 | None:intergenic |
TAATGATTGGTATGCCAAGG+AGG | 0.627561 | 3.2:+67403395 | MS.gene022463:CDS |
AAACTTGTGTGTATAAAACC+AGG | 0.627608 | 3.2:-67402059 | None:intergenic |
ATGGGAAGGGAAAGTTTGCA+GGG | 0.630231 | 3.2:+67403435 | MS.gene022463:CDS |
AGAACCAACTAATGAAGACT+GGG | 0.631293 | 3.2:+67399970 | MS.gene022463:CDS |
TAGGAAATGCCCTAACCTGT+AGG | 0.633482 | 3.2:-67402216 | None:intergenic |
TCAGTGGTGTTAAGTGAACC+AGG | 0.637131 | 3.2:-67402486 | None:intergenic |
TATGACACTCCAGATTCAGG+TGG | 0.641435 | 3.2:+67402790 | MS.gene022463:CDS |
CATAATTCAGAGTGCCAAGG+TGG | 0.646773 | 3.2:-67403921 | None:intergenic |
TAGATAGAAAACAACAACCA+TGG | 0.654457 | 3.2:+67403334 | MS.gene022463:CDS |
AAATGGATACATCTCACAGT+GGG | 0.656289 | 3.2:+67402572 | MS.gene022463:CDS |
TGGTGTTAAGTGAACCAGGT+TGG | 0.659309 | 3.2:-67402482 | None:intergenic |
ATCATTGATGAGCTGGTCAG+TGG | 0.660666 | 3.2:-67402502 | None:intergenic |
ACCCAACCCCGGTGGCAAGG+GGG | 0.660815 | 3.2:+67401115 | MS.gene022463:CDS |
CAGTAATGGAGGCAGAACTG+TGG | 0.664518 | 3.2:-67396616 | None:intergenic |
TCAATATGTACACCCAACCC+CGG | 0.665070 | 3.2:+67401104 | MS.gene022463:CDS |
ACACATAATTCAGAGTGCCA+AGG | 0.668389 | 3.2:-67403924 | None:intergenic |
TGCAGGGTGAGGATACAGAA+TGG | 0.675793 | 3.2:+67399924 | MS.gene022463:intron |
CATTAGAGGAGTAACCGAGT+GGG | 0.692825 | 3.2:-67403377 | None:intergenic |
TCATTAGAGGAGTAACCGAG+TGG | 0.714971 | 3.2:-67403378 | None:intergenic |
CAAATGGATACATCTCACAG+TGG | 0.732996 | 3.2:+67402571 | MS.gene022463:CDS |
TGTGCTGCAAAGATTAACCA+TGG | 0.735965 | 3.2:-67403351 | None:intergenic |
ATATGTACACCCAACCCCGG+TGG | 0.737349 | 3.2:+67401107 | MS.gene022463:CDS |
TGGTTGTGAGAAAACCACCT+TGG | 0.782552 | 3.2:+67403907 | MS.gene022463:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 67396470 | 67403937 | 67396470 | ID=MS.gene022463 |
chr3.2 | mRNA | 67396470 | 67403937 | 67396470 | ID=MS.gene022463.t1;Parent=MS.gene022463 |
chr3.2 | exon | 67396470 | 67396664 | 67396470 | ID=MS.gene022463.t1.exon1;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67396470 | 67396664 | 67396470 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67399929 | 67400020 | 67399929 | ID=MS.gene022463.t1.exon2;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67399929 | 67400020 | 67399929 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67401100 | 67401169 | 67401100 | ID=MS.gene022463.t1.exon3;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67401100 | 67401169 | 67401100 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67401259 | 67401381 | 67401259 | ID=MS.gene022463.t1.exon4;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67401259 | 67401381 | 67401259 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67401498 | 67401590 | 67401498 | ID=MS.gene022463.t1.exon5;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67401498 | 67401590 | 67401498 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67401751 | 67401880 | 67401751 | ID=MS.gene022463.t1.exon6;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67401751 | 67401880 | 67401751 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67402027 | 67402108 | 67402027 | ID=MS.gene022463.t1.exon7;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67402027 | 67402108 | 67402027 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67402211 | 67402343 | 67402211 | ID=MS.gene022463.t1.exon8;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67402211 | 67402343 | 67402211 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67402447 | 67402652 | 67402447 | ID=MS.gene022463.t1.exon9;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67402447 | 67402652 | 67402447 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67402750 | 67402875 | 67402750 | ID=MS.gene022463.t1.exon10;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67402750 | 67402875 | 67402750 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67403227 | 67403536 | 67403227 | ID=MS.gene022463.t1.exon11;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67403227 | 67403536 | 67403227 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
chr3.2 | exon | 67403632 | 67403937 | 67403632 | ID=MS.gene022463.t1.exon12;Parent=MS.gene022463.t1 |
chr3.2 | CDS | 67403632 | 67403937 | 67403632 | ID=cds.MS.gene022463.t1;Parent=MS.gene022463.t1 |
Gene Sequence |
Protein sequence |