Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69485.t1 | XP_024629255.1 | 97.4 | 612 | 13 | 1 | 4 | 615 | 4 | 612 | 0.00E+00 | 1257.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69485.t1 | Q9LMX4 | 73.4 | 597 | 158 | 1 | 19 | 615 | 18 | 613 | 1.3e-276 | 953.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69485.t1 | A0A072U2E8 | 97.4 | 612 | 13 | 1 | 4 | 615 | 4 | 612 | 0.0e+00 | 1257.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene29799 | MS.gene69485 | PPI |
MS.gene35570 | MS.gene69485 | PPI |
MS.gene98300 | MS.gene69485 | PPI |
MS.gene057175 | MS.gene69485 | PPI |
MS.gene011407 | MS.gene69485 | PPI |
MS.gene022461 | MS.gene69485 | PPI |
MS.gene29801 | MS.gene69485 | PPI |
MS.gene033368 | MS.gene69485 | PPI |
MS.gene35568 | MS.gene69485 | PPI |
MS.gene49261 | MS.gene69485 | PPI |
MS.gene022463 | MS.gene69485 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69485.t1 | MTR_8g063080 | 97.073 | 615 | 15 | 1 | 1 | 615 | 1 | 612 | 0.0 | 1249 |
MS.gene69485.t1 | MTR_5g045600 | 77.327 | 591 | 133 | 1 | 25 | 615 | 30 | 619 | 0.0 | 988 |
MS.gene69485.t1 | MTR_4g103520 | 71.380 | 587 | 167 | 1 | 30 | 615 | 41 | 627 | 0.0 | 919 |
MS.gene69485.t1 | MTR_3g074930 | 68.412 | 611 | 190 | 1 | 8 | 615 | 13 | 623 | 0.0 | 900 |
MS.gene69485.t1 | MTR_3g074930 | 67.638 | 618 | 190 | 2 | 8 | 615 | 13 | 630 | 0.0 | 893 |
MS.gene69485.t1 | MTR_4g103520 | 72.182 | 550 | 152 | 1 | 67 | 615 | 1 | 550 | 0.0 | 866 |
MS.gene69485.t1 | MTR_3g074970 | 63.848 | 473 | 126 | 2 | 143 | 615 | 100 | 527 | 0.0 | 634 |
MS.gene69485.t1 | MTR_3g074970 | 66.346 | 104 | 35 | 0 | 512 | 615 | 3 | 106 | 5.89e-36 | 142 |
MS.gene69485.t1 | MTR_3g074960 | 51.440 | 486 | 169 | 5 | 8 | 469 | 13 | 455 | 7.53e-170 | 491 |
MS.gene69485.t1 | MTR_1g052505 | 36.767 | 563 | 292 | 17 | 76 | 595 | 74 | 615 | 8.33e-112 | 348 |
MS.gene69485.t1 | MTR_4g037670 | 36.189 | 572 | 306 | 17 | 63 | 595 | 83 | 634 | 5.21e-107 | 336 |
MS.gene69485.t1 | MTR_4g082930 | 30.333 | 600 | 321 | 26 | 48 | 593 | 24 | 580 | 1.19e-61 | 216 |
MS.gene69485.t1 | MTR_4g082940 | 30.052 | 579 | 300 | 23 | 67 | 593 | 41 | 566 | 4.05e-58 | 206 |
MS.gene69485.t1 | MTR_7g104330 | 26.601 | 406 | 234 | 14 | 184 | 584 | 65 | 411 | 1.51e-27 | 116 |
MS.gene69485.t1 | MTR_6g005650 | 65.385 | 78 | 27 | 0 | 184 | 261 | 10 | 87 | 1.63e-27 | 113 |
MS.gene69485.t1 | MTR_1g060360 | 26.150 | 413 | 235 | 14 | 184 | 588 | 57 | 407 | 3.61e-26 | 112 |
MS.gene69485.t1 | MTR_6g013050 | 28.571 | 329 | 165 | 9 | 241 | 541 | 146 | 432 | 8.01e-25 | 108 |
MS.gene69485.t1 | MTR_4g115670 | 26.009 | 446 | 265 | 19 | 170 | 597 | 53 | 451 | 8.65e-25 | 108 |
MS.gene69485.t1 | MTR_6g013050 | 28.571 | 329 | 165 | 9 | 241 | 541 | 146 | 432 | 9.76e-25 | 109 |
MS.gene69485.t1 | MTR_3g083810 | 28.354 | 328 | 166 | 12 | 241 | 541 | 147 | 432 | 2.52e-23 | 104 |
MS.gene69485.t1 | MTR_3g083820 | 28.354 | 328 | 166 | 12 | 241 | 541 | 147 | 432 | 3.91e-23 | 103 |
MS.gene69485.t1 | MTR_7g056403 | 29.268 | 328 | 163 | 11 | 241 | 541 | 146 | 431 | 4.88e-22 | 100 |
MS.gene69485.t1 | MTR_3g051240 | 25.978 | 358 | 212 | 12 | 241 | 593 | 99 | 408 | 4.38e-21 | 96.7 |
MS.gene69485.t1 | MTR_0188s0020 | 25.824 | 364 | 223 | 13 | 241 | 590 | 119 | 449 | 1.01e-20 | 95.9 |
MS.gene69485.t1 | MTR_7g104360 | 24.069 | 349 | 219 | 9 | 241 | 586 | 102 | 407 | 3.17e-20 | 94.0 |
MS.gene69485.t1 | MTR_5g092360 | 25.852 | 352 | 206 | 13 | 241 | 586 | 105 | 407 | 1.83e-19 | 91.7 |
MS.gene69485.t1 | MTR_4g037105 | 24.865 | 370 | 209 | 15 | 241 | 585 | 113 | 438 | 1.46e-18 | 89.4 |
MS.gene69485.t1 | MTR_1g112630 | 23.514 | 370 | 214 | 15 | 241 | 585 | 115 | 440 | 2.70e-16 | 82.4 |
MS.gene69485.t1 | MTR_7g405800 | 92.857 | 28 | 2 | 0 | 227 | 254 | 1 | 28 | 2.84e-12 | 67.0 |
MS.gene69485.t1 | MTR_2g020270 | 68.085 | 47 | 13 | 1 | 114 | 158 | 33 | 79 | 5.94e-12 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69485.t1 | AT1G13750 | 71.870 | 615 | 171 | 2 | 1 | 615 | 1 | 613 | 0.0 | 933 |
MS.gene69485.t1 | AT5G50400 | 67.323 | 609 | 198 | 1 | 7 | 615 | 4 | 611 | 0.0 | 881 |
MS.gene69485.t1 | AT4G24890 | 66.382 | 586 | 195 | 2 | 30 | 614 | 30 | 614 | 0.0 | 843 |
MS.gene69485.t1 | AT5G50400 | 72.994 | 511 | 137 | 1 | 105 | 615 | 30 | 539 | 0.0 | 817 |
MS.gene69485.t1 | AT2G03450 | 30.921 | 608 | 316 | 24 | 43 | 593 | 17 | 577 | 2.78e-65 | 226 |
MS.gene69485.t1 | AT1G13900 | 30.132 | 604 | 314 | 26 | 48 | 593 | 24 | 577 | 4.64e-62 | 218 |
MS.gene69485.t1 | AT3G52810 | 26.355 | 406 | 235 | 14 | 184 | 584 | 62 | 408 | 8.64e-27 | 114 |
MS.gene69485.t1 | AT3G52820 | 27.041 | 392 | 222 | 15 | 199 | 584 | 71 | 404 | 2.17e-25 | 109 |
MS.gene69485.t1 | AT4G13700 | 26.972 | 393 | 202 | 14 | 188 | 541 | 80 | 426 | 1.05e-24 | 108 |
MS.gene69485.t1 | AT3G52780 | 25.553 | 407 | 241 | 15 | 184 | 584 | 55 | 405 | 8.29e-24 | 105 |
MS.gene69485.t1 | AT3G20500 | 28.114 | 281 | 171 | 10 | 315 | 586 | 147 | 405 | 3.68e-21 | 97.1 |
MS.gene69485.t1 | AT1G56360 | 26.593 | 361 | 215 | 15 | 241 | 586 | 114 | 439 | 1.06e-20 | 95.9 |
MS.gene69485.t1 | AT4G36350 | 25.762 | 361 | 218 | 16 | 241 | 586 | 114 | 439 | 2.74e-20 | 94.7 |
MS.gene69485.t1 | AT3G07130 | 27.492 | 331 | 165 | 11 | 241 | 541 | 140 | 425 | 2.91e-20 | 95.1 |
MS.gene69485.t1 | AT5G34850 | 25.000 | 360 | 222 | 13 | 241 | 586 | 112 | 437 | 1.69e-19 | 92.4 |
MS.gene69485.t1 | AT4G13700 | 26.479 | 355 | 186 | 13 | 188 | 503 | 80 | 398 | 2.06e-19 | 91.3 |
MS.gene69485.t1 | AT2G27190 | 24.932 | 365 | 215 | 13 | 241 | 585 | 118 | 443 | 1.93e-18 | 89.0 |
MS.gene69485.t1 | AT2G16430 | 23.889 | 360 | 225 | 12 | 241 | 585 | 117 | 442 | 1.76e-16 | 82.8 |
MS.gene69485.t1 | AT2G16430 | 25.818 | 275 | 159 | 9 | 333 | 585 | 71 | 322 | 3.70e-16 | 80.9 |
MS.gene69485.t1 | AT2G18130 | 26.736 | 288 | 166 | 12 | 333 | 597 | 168 | 433 | 1.72e-15 | 79.7 |
MS.gene69485.t1 | AT3G07130 | 25.141 | 354 | 177 | 12 | 241 | 541 | 140 | 458 | 3.05e-15 | 79.3 |
MS.gene69485.t1 | AT2G32770 | 23.304 | 339 | 184 | 9 | 241 | 543 | 149 | 447 | 2.30e-13 | 73.6 |
MS.gene69485.t1 | AT2G32770 | 23.304 | 339 | 184 | 9 | 241 | 543 | 68 | 366 | 6.21e-13 | 71.6 |
Find 143 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATACTCCATGTCGTATTTA+TGG | 0.166564 | 8.1:+40826422 | None:intergenic |
TTGCAGGTACACATACAAAT+TGG | 0.199833 | 8.1:-40829024 | MS.gene69485:intron |
TTAAGATATCAAGGGATTAT+AGG | 0.247967 | 8.1:-40826296 | MS.gene69485:CDS |
TAGTTAATGGTACAACAATT+TGG | 0.273569 | 8.1:-40828992 | MS.gene69485:CDS |
GCACACACACGAACCTTAAT+AGG | 0.285034 | 8.1:+40832541 | None:intergenic |
GGCATGATCTTTCATAGTTA+TGG | 0.285173 | 8.1:+40827059 | None:intergenic |
CAGTCATGTATTGATGGATT+TGG | 0.285537 | 8.1:+40832861 | None:intergenic |
TGTGGTCATATTTGGTGATA+TGG | 0.287423 | 8.1:-40828913 | MS.gene69485:CDS |
TAAGATATCAAGGGATTATA+GGG | 0.288726 | 8.1:-40826295 | MS.gene69485:CDS |
ACAGACCTTGCTGTCATATA+TGG | 0.296273 | 8.1:+40828038 | None:intergenic |
CTAGGATATACTGGAGCATT+TGG | 0.298787 | 8.1:+40832169 | None:intergenic |
GTAATTGTGACTGGAGAAAT+TGG | 0.301153 | 8.1:+40832426 | None:intergenic |
GTAACATGGACAAGCGGATA+TGG | 0.302454 | 8.1:-40831883 | MS.gene69485:CDS |
GTACAACGTGTGGTCATATT+TGG | 0.313256 | 8.1:-40828921 | MS.gene69485:CDS |
ATCACAACATACTCTTTATT+CGG | 0.327571 | 8.1:+40831535 | None:intergenic |
CCTGTGTTCTGCACCTATTA+AGG | 0.328690 | 8.1:-40832554 | MS.gene69485:intron |
TTTGACACAGCAACGAGTTT+TGG | 0.336700 | 8.1:+40832211 | None:intergenic |
CCATAAAATGATCCACTTCC+TGG | 0.339107 | 8.1:+40827908 | None:intergenic |
CATCAATACATGACTGGATT+GGG | 0.345545 | 8.1:-40832854 | MS.gene69485:CDS |
TTGGGGCATAGATTAGTTAA+TGG | 0.345837 | 8.1:-40829005 | MS.gene69485:CDS |
CTGGAAATTGTTATACTCAT+TGG | 0.349506 | 8.1:+40828211 | None:intergenic |
GTCAGGTACTCTGTTGACTA+TGG | 0.353549 | 8.1:-40827340 | MS.gene69485:intron |
TCTTCTCTCCTGCAAACTTC+AGG | 0.356280 | 8.1:-40832830 | MS.gene69485:intron |
AATTACAAGGGCTCCTTGAA+TGG | 0.365845 | 8.1:-40826498 | MS.gene69485:CDS |
CGCCATCCCACAGTCCTTGC+CGG | 0.375857 | 8.1:+40831601 | None:intergenic |
CATAGCATAAATCACCAATA+TGG | 0.376549 | 8.1:+40828126 | None:intergenic |
TAGAGAGATACCTGATAGAT+TGG | 0.388460 | 8.1:+40827037 | None:intergenic |
AAGCCTCTGGCAAAAGTATA+AGG | 0.389657 | 8.1:-40827107 | MS.gene69485:CDS |
TGCAGGTACACATACAAATT+GGG | 0.397681 | 8.1:-40829023 | MS.gene69485:intron |
AAGATCATGCCCAATCTATC+AGG | 0.397791 | 8.1:-40827047 | MS.gene69485:intron |
ATACTCCATGTCGTATTTAT+GGG | 0.399718 | 8.1:+40826423 | None:intergenic |
TTCTCATTTGCTCTCTTCAC+CGG | 0.402468 | 8.1:-40832349 | MS.gene69485:CDS |
GCTCGATCTGTGCAGTAAAC+TGG | 0.403716 | 8.1:+40828078 | None:intergenic |
ATCTTCAAAGACCATGACTT+TGG | 0.404710 | 8.1:-40826402 | MS.gene69485:CDS |
TTCCTTGCACATAGGGTACT+TGG | 0.407611 | 8.1:-40827199 | MS.gene69485:CDS |
GGTGATTTATGCTATGCTAA+TGG | 0.409463 | 8.1:-40828119 | MS.gene69485:CDS |
TGTGCTAATCTAGGATATAC+TGG | 0.413518 | 8.1:+40832160 | None:intergenic |
TCCTAATCTACTTGGCTTCA+AGG | 0.414331 | 8.1:-40833049 | MS.gene69485:intron |
GGTGGGTACCTGAAGTTTGC+AGG | 0.416365 | 8.1:+40832822 | None:intergenic |
CCAATCCAGTCATGTATTGA+TGG | 0.425382 | 8.1:+40832855 | None:intergenic |
CATCTGGATGAAGAGCAAAA+AGG | 0.426664 | 8.1:+40833088 | None:intergenic |
ACAGAACTTGATTGGAGAAA+AGG | 0.430204 | 8.1:-40827292 | MS.gene69485:CDS |
ATTAATCAACTGCAGCTTGA+AGG | 0.430750 | 8.1:+40832384 | None:intergenic |
TAGCTCACACAGAACTTGAT+TGG | 0.432338 | 8.1:-40827300 | MS.gene69485:CDS |
GGACAATACATGTAGTGGTT+GGG | 0.438354 | 8.1:-40826476 | MS.gene69485:CDS |
AAACTAGTGTGTATGTATCC+TGG | 0.440969 | 8.1:+40831574 | None:intergenic |
ATAGACATCGTCTTCCATAT+TGG | 0.442461 | 8.1:-40828140 | MS.gene69485:CDS |
CCATCAATACATGACTGGAT+TGG | 0.445625 | 8.1:-40832855 | MS.gene69485:CDS |
TCAGATTATTCAAGACTTGA+AGG | 0.448344 | 8.1:-40828165 | MS.gene69485:CDS |
TTTCGGCCCCATTCAACAAA+AGG | 0.451209 | 8.1:+40831844 | None:intergenic |
ACTCTAACAACAAGTTTGAA+TGG | 0.451323 | 8.1:+40826355 | None:intergenic |
TTTAGGGACAAAATACAGAA+TGG | 0.461434 | 8.1:-40832905 | MS.gene69485:intron |
TAGTATTGAGTGAGCCAGGC+TGG | 0.462945 | 8.1:+40828192 | None:intergenic |
AAGGGATTATAGGGACATCT+TGG | 0.465407 | 8.1:-40826286 | MS.gene69485:CDS |
GTTGAATGGGGCCGAAAAGA+AGG | 0.465760 | 8.1:-40831838 | MS.gene69485:CDS |
ACCTTGAAGCCAAGTAGATT+AGG | 0.468776 | 8.1:+40833048 | None:intergenic |
TACATGTATTGTCCCATTCA+AGG | 0.471538 | 8.1:+40826485 | None:intergenic |
AAACTTGTGCAATCTCCTGC+GGG | 0.473944 | 8.1:-40831814 | MS.gene69485:CDS |
GAGGAGACACCACCGCTTGT+TGG | 0.474992 | 8.1:+40833160 | None:intergenic |
TTTAAATCATCTCCTTATCC+TGG | 0.477943 | 8.1:-40828954 | MS.gene69485:CDS |
GACAATACATGTAGTGGTTG+GGG | 0.479643 | 8.1:-40826475 | MS.gene69485:CDS |
GAACGTGACTGGCCAGGAAG+TGG | 0.480697 | 8.1:-40827920 | MS.gene69485:CDS |
TGAAGGTCCTCCCGTCCCAT+TGG | 0.486833 | 8.1:+40827130 | None:intergenic |
TGTGCTCTTGTAATTGTGAC+TGG | 0.487938 | 8.1:+40832417 | None:intergenic |
AGAGAGATACCTGATAGATT+GGG | 0.493013 | 8.1:+40827038 | None:intergenic |
GGGAGGACCTTCAAAGCCTC+TGG | 0.498446 | 8.1:-40827120 | MS.gene69485:CDS |
GTGGCAATCATGAACGTGAC+TGG | 0.498642 | 8.1:-40827931 | MS.gene69485:CDS |
TAACATGGACAAGCGGATAT+GGG | 0.500481 | 8.1:-40831882 | MS.gene69485:CDS |
GCTCTAAGATCAAGATGCTA+AGG | 0.500802 | 8.1:+40826233 | None:intergenic |
AACTAGTGTGTATGTATCCT+GGG | 0.501076 | 8.1:+40831575 | None:intergenic |
GTGGCTTTGATAGAAGCATC+TGG | 0.502271 | 8.1:+40833072 | None:intergenic |
TTTGTCTGTCAACGGATGCT+AGG | 0.503216 | 8.1:+40827239 | None:intergenic |
AAGGTCGACATAGCCATGTA+TGG | 0.508178 | 8.1:-40827088 | MS.gene69485:CDS |
GTTGATATTCCTTGCACATA+GGG | 0.510146 | 8.1:-40827206 | MS.gene69485:CDS |
TAATGGATACCTTTCACAAT+GGG | 0.510552 | 8.1:-40828102 | MS.gene69485:CDS |
TTAGGGACAAAATACAGAAT+GGG | 0.512417 | 8.1:-40832904 | MS.gene69485:intron |
AATCATGAACGTGACTGGCC+AGG | 0.513189 | 8.1:-40827926 | MS.gene69485:CDS |
ATTACAAGGGCTCCTTGAAT+GGG | 0.515772 | 8.1:-40826497 | MS.gene69485:CDS |
CAAATCCATCAATACATGAC+TGG | 0.520281 | 8.1:-40832860 | MS.gene69485:CDS |
ACTAACAAACTAGTAAATAA+CGG | 0.525729 | 8.1:+40833201 | None:intergenic |
AGGAGGTGAATGTGGTGTAT+TGG | 0.525849 | 8.1:-40827873 | MS.gene69485:CDS |
GCGGATTTCTATGTTGCAGA+AGG | 0.526031 | 8.1:-40827166 | MS.gene69485:CDS |
GGTTGATATTCCTTGCACAT+AGG | 0.530731 | 8.1:-40827207 | MS.gene69485:CDS |
TAAAGAGAAGCACAATTACA+AGG | 0.532809 | 8.1:-40826511 | MS.gene69485:CDS |
GGCTCGTTTGAAGAACCAAT+GGG | 0.540346 | 8.1:-40827145 | MS.gene69485:CDS |
AGGTGCACCGGCAAGGACTG+TGG | 0.541596 | 8.1:-40831608 | MS.gene69485:CDS |
AAAGCCACTCCTAATCTACT+TGG | 0.548010 | 8.1:-40833057 | MS.gene69485:CDS |
GATTAGCACAAGGCAAAACA+TGG | 0.548775 | 8.1:-40832147 | MS.gene69485:CDS |
AAGATGCTAAGGTTGTACTT+TGG | 0.551090 | 8.1:+40826244 | None:intergenic |
GGGACAATACATGTAGTGGT+TGG | 0.552454 | 8.1:-40826477 | MS.gene69485:CDS |
GAGTATAACAATTTCCAGCC+TGG | 0.553865 | 8.1:-40828206 | MS.gene69485:CDS |
TCATTTGCTCTCTTCACCGG+TGG | 0.554385 | 8.1:-40832346 | MS.gene69485:CDS |
CTAATGGATACCTTTCACAA+TGG | 0.557868 | 8.1:-40828103 | MS.gene69485:CDS |
GTTATGGACATGTCCATACA+TGG | 0.559211 | 8.1:+40827075 | None:intergenic |
GGTACTTGGTTATTCTTCTG+CGG | 0.559468 | 8.1:-40827185 | MS.gene69485:CDS |
GAGTACAAGAAGAGTAGCGA+TGG | 0.564034 | 8.1:-40826336 | MS.gene69485:CDS |
AGTCACAATTACAAGAGCAC+AGG | 0.567158 | 8.1:-40832415 | MS.gene69485:CDS |
CACCGGCAAGGACTGTGGGA+TGG | 0.567757 | 8.1:-40831603 | MS.gene69485:CDS |
GTTTGAAGAACCAATGGGAC+GGG | 0.569614 | 8.1:-40827140 | MS.gene69485:CDS |
CCTTAATAGGTGCAGAACAC+AGG | 0.574212 | 8.1:+40832554 | None:intergenic |
TTTGTAGTATTGAGTGAGCC+AGG | 0.574371 | 8.1:+40828188 | None:intergenic |
TACTCCATGTCGTATTTATG+GGG | 0.575310 | 8.1:+40826424 | None:intergenic |
CATATTTGGTGATATGGGAA+AGG | 0.576543 | 8.1:-40828907 | MS.gene69485:intron |
AAGTACATTTGTTAATCCAC+CGG | 0.578034 | 8.1:+40832330 | None:intergenic |
GTGGTCATATTTGGTGATAT+GGG | 0.579555 | 8.1:-40828912 | MS.gene69485:CDS |
ACATTCACCTCCTGAATCCA+AGG | 0.581934 | 8.1:+40827883 | None:intergenic |
ACTGTGGGATGGCGTGACCC+AGG | 0.584938 | 8.1:-40831592 | MS.gene69485:CDS |
ATAAATATATATAGGTGCAC+CGG | 0.585955 | 8.1:-40831620 | MS.gene69485:intron |
AGGCTCGTTTGAAGAACCAA+TGG | 0.586393 | 8.1:-40827146 | MS.gene69485:CDS |
TATATATAGGTGCACCGGCA+AGG | 0.590814 | 8.1:-40831615 | MS.gene69485:intron |
CAAACTTGTGCAATCTCCTG+CGG | 0.591711 | 8.1:-40831815 | MS.gene69485:CDS |
GCTTCACAAATCCAAAGTCA+TGG | 0.597068 | 8.1:+40826391 | None:intergenic |
TATGGAACCTTGGATTCAGG+AGG | 0.602460 | 8.1:-40827890 | MS.gene69485:CDS |
TAAACTGGTCCCATTGTGAA+AGG | 0.608474 | 8.1:+40828093 | None:intergenic |
GATGCGTAGGCAGAAGCTGA+TGG | 0.608506 | 8.1:-40828236 | MS.gene69485:intron |
TCGAAAGTCAATGTCCCCGC+AGG | 0.608940 | 8.1:+40831799 | None:intergenic |
TTCGATCGCAACACCATGTG+TGG | 0.613588 | 8.1:-40831781 | MS.gene69485:intron |
CTCGGCAGGAACATAAAGCA+TGG | 0.615438 | 8.1:+40827844 | None:intergenic |
AACCAAGTACCCTATGTGCA+AGG | 0.618716 | 8.1:+40827197 | None:intergenic |
CGTTTGAAGAACCAATGGGA+CGG | 0.618985 | 8.1:-40827141 | MS.gene69485:CDS |
ATAGGTGCAGAACACAGGAA+TGG | 0.620532 | 8.1:+40832559 | None:intergenic |
GCAGGTACACATACAAATTG+GGG | 0.623083 | 8.1:-40829022 | MS.gene69485:intron |
GGTGCAGAACACAGGAATGG+AGG | 0.624536 | 8.1:+40832562 | None:intergenic |
AATTACAAGAGCACAGGGAA+AGG | 0.625678 | 8.1:-40832409 | MS.gene69485:CDS |
TCAAAATTCTGTACAACGTG+TGG | 0.627730 | 8.1:-40828931 | MS.gene69485:CDS |
GGTGCACCGGCAAGGACTGT+GGG | 0.628250 | 8.1:-40831607 | MS.gene69485:CDS |
ATCAATACATGACTGGATTG+GGG | 0.628716 | 8.1:-40832853 | MS.gene69485:CDS |
GAAGCCAAGTAGATTAGGAG+TGG | 0.630065 | 8.1:+40833053 | None:intergenic |
TGTAACAGATTACTGTAACA+TGG | 0.640681 | 8.1:-40831897 | MS.gene69485:intron |
AAGTTCCATATATGACAGCA+AGG | 0.646290 | 8.1:-40828043 | MS.gene69485:intron |
AAAGAGAAGCACAATTACAA+GGG | 0.652034 | 8.1:-40826510 | MS.gene69485:CDS |
GTCACAATTACAAGAGCACA+GGG | 0.655357 | 8.1:-40832414 | MS.gene69485:CDS |
TTGGATTCAGGAGGTGAATG+TGG | 0.657164 | 8.1:-40827881 | MS.gene69485:CDS |
GAATGGGACAATACATGTAG+TGG | 0.659720 | 8.1:-40826481 | MS.gene69485:CDS |
ATTAGCACAAGGCAAAACAT+GGG | 0.663003 | 8.1:-40832146 | MS.gene69485:CDS |
TGAAGAACCAATGGGACGGG+AGG | 0.665893 | 8.1:-40827137 | MS.gene69485:CDS |
ATTACTGTAACATGGACAAG+CGG | 0.672618 | 8.1:-40831889 | MS.gene69485:CDS |
ACAATACATGTAGTGGTTGG+GGG | 0.680243 | 8.1:-40826474 | MS.gene69485:CDS |
TGTGCAAGGAATATCAACCA+TGG | 0.697293 | 8.1:+40827211 | None:intergenic |
ACTCCATGTCGTATTTATGG+GGG | 0.697533 | 8.1:+40826425 | None:intergenic |
AACTTGTGCAATCTCCTGCG+GGG | 0.718591 | 8.1:-40831813 | MS.gene69485:CDS |
TGATGTAAATCATGAGACTG+AGG | 0.722627 | 8.1:+40833141 | None:intergenic |
GTATATCCTAGATTAGCACA+AGG | 0.736326 | 8.1:-40832157 | MS.gene69485:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 40826242 | 40833229 | 40826242 | ID=MS.gene69485 |
chr8.1 | mRNA | 40826242 | 40833229 | 40826242 | ID=MS.gene69485.t1;Parent=MS.gene69485 |
chr8.1 | exon | 40833050 | 40833229 | 40833050 | ID=MS.gene69485.t1.exon1;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40833050 | 40833229 | 40833050 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40832831 | 40832922 | 40832831 | ID=MS.gene69485.t1.exon2;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40832831 | 40832922 | 40832831 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40832555 | 40832621 | 40832555 | ID=MS.gene69485.t1.exon3;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40832555 | 40832621 | 40832555 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40832336 | 40832458 | 40832336 | ID=MS.gene69485.t1.exon4;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40832336 | 40832458 | 40832336 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40832141 | 40832233 | 40832141 | ID=MS.gene69485.t1.exon5;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40832141 | 40832233 | 40832141 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40831782 | 40831911 | 40831782 | ID=MS.gene69485.t1.exon6;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40831782 | 40831911 | 40831782 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40831547 | 40831628 | 40831547 | ID=MS.gene69485.t1.exon7;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40831547 | 40831628 | 40831547 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40828908 | 40829040 | 40828908 | ID=MS.gene69485.t1.exon8;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40828908 | 40829040 | 40828908 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40828044 | 40828249 | 40828044 | ID=MS.gene69485.t1.exon9;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40828044 | 40828249 | 40828044 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40827827 | 40827952 | 40827827 | ID=MS.gene69485.t1.exon10;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40827827 | 40827952 | 40827827 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40827048 | 40827357 | 40827048 | ID=MS.gene69485.t1.exon11;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40827048 | 40827357 | 40827048 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
chr8.1 | exon | 40826242 | 40826547 | 40826242 | ID=MS.gene69485.t1.exon12;Parent=MS.gene69485.t1 |
chr8.1 | CDS | 40826242 | 40826547 | 40826242 | ID=cds.MS.gene69485.t1;Parent=MS.gene69485.t1 |
Gene Sequence |
Protein sequence |