Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98060.t1 | XP_003614162.2 | 96.1 | 612 | 24 | 0 | 1 | 612 | 8 | 619 | 0.00E+00 | 1238 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98060.t1 | Q9LMX4 | 75.1 | 599 | 149 | 0 | 14 | 612 | 15 | 613 | 3.7e-284 | 978.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98060.t1 | G7JZ41 | 96.1 | 612 | 24 | 0 | 1 | 612 | 8 | 619 | 0.0e+00 | 1238.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05016 | MS.gene98060 | 0.825594 | 4.31E-54 | -1.69E-46 |
| MS.gene050198 | MS.gene98060 | 0.803107 | 4.08E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene98060 | 0.828961 | 6.72E-55 | -1.69E-46 |
| MS.gene052358 | MS.gene98060 | -0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene98060 | 0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene98060 | 0.804484 | 2.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022461 | MS.gene98060 | PPI |
| MS.gene011407 | MS.gene98060 | PPI |
| MS.gene29801 | MS.gene98060 | PPI |
| MS.gene033368 | MS.gene98060 | PPI |
| MS.gene022463 | MS.gene98060 | PPI |
| MS.gene49261 | MS.gene98060 | PPI |
| MS.gene35568 | MS.gene98060 | PPI |
| MS.gene29799 | MS.gene98060 | PPI |
| MS.gene98060 | MS.gene98300 | PPI |
| MS.gene35570 | MS.gene98060 | PPI |
| MS.gene057175 | MS.gene98060 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98060.t1 | MTR_5g045600 | 96.078 | 612 | 24 | 0 | 1 | 612 | 8 | 619 | 0.0 | 1232 |
| MS.gene98060.t1 | MTR_8g063080 | 76.198 | 605 | 143 | 1 | 9 | 612 | 8 | 612 | 0.0 | 991 |
| MS.gene98060.t1 | MTR_4g103520 | 69.294 | 609 | 182 | 2 | 9 | 612 | 19 | 627 | 0.0 | 919 |
| MS.gene98060.t1 | MTR_3g074930 | 68.233 | 617 | 188 | 2 | 4 | 612 | 7 | 623 | 0.0 | 890 |
| MS.gene98060.t1 | MTR_3g074930 | 67.468 | 624 | 188 | 3 | 4 | 612 | 7 | 630 | 0.0 | 883 |
| MS.gene98060.t1 | MTR_4g103520 | 72.727 | 550 | 149 | 1 | 64 | 612 | 1 | 550 | 0.0 | 878 |
| MS.gene98060.t1 | MTR_3g074970 | 61.448 | 511 | 141 | 3 | 113 | 612 | 62 | 527 | 0.0 | 644 |
| MS.gene98060.t1 | MTR_3g074970 | 66.346 | 104 | 35 | 0 | 509 | 612 | 3 | 106 | 6.24e-36 | 142 |
| MS.gene98060.t1 | MTR_3g074960 | 51.429 | 490 | 166 | 7 | 4 | 464 | 7 | 453 | 8.59e-168 | 486 |
| MS.gene98060.t1 | MTR_1g052505 | 36.991 | 565 | 288 | 18 | 73 | 592 | 74 | 615 | 2.04e-111 | 347 |
| MS.gene98060.t1 | MTR_4g037670 | 36.126 | 573 | 301 | 18 | 62 | 592 | 85 | 634 | 2.97e-105 | 332 |
| MS.gene98060.t1 | MTR_4g082930 | 30.936 | 598 | 316 | 25 | 47 | 590 | 26 | 580 | 5.19e-62 | 217 |
| MS.gene98060.t1 | MTR_4g082940 | 30.829 | 519 | 271 | 21 | 124 | 590 | 84 | 566 | 9.76e-54 | 194 |
| MS.gene98060.t1 | MTR_6g005650 | 66.197 | 71 | 24 | 0 | 181 | 251 | 10 | 80 | 1.02e-26 | 110 |
| MS.gene98060.t1 | MTR_3g083810 | 28.354 | 328 | 166 | 11 | 238 | 538 | 147 | 432 | 2.89e-25 | 110 |
| MS.gene98060.t1 | MTR_3g083820 | 28.049 | 328 | 167 | 11 | 238 | 538 | 147 | 432 | 4.82e-25 | 109 |
| MS.gene98060.t1 | MTR_7g104360 | 26.462 | 359 | 194 | 12 | 238 | 581 | 102 | 405 | 7.65e-25 | 107 |
| MS.gene98060.t1 | MTR_1g060360 | 25.000 | 408 | 246 | 12 | 181 | 585 | 57 | 407 | 1.48e-24 | 107 |
| MS.gene98060.t1 | MTR_7g104330 | 24.766 | 428 | 255 | 15 | 181 | 601 | 65 | 432 | 1.28e-23 | 104 |
| MS.gene98060.t1 | MTR_7g056403 | 29.179 | 329 | 162 | 11 | 238 | 538 | 146 | 431 | 5.34e-23 | 103 |
| MS.gene98060.t1 | MTR_4g115670 | 25.597 | 461 | 281 | 17 | 152 | 594 | 35 | 451 | 3.28e-22 | 100 |
| MS.gene98060.t1 | MTR_3g051240 | 24.722 | 360 | 214 | 11 | 238 | 590 | 99 | 408 | 4.13e-22 | 99.8 |
| MS.gene98060.t1 | MTR_5g092360 | 26.166 | 386 | 220 | 14 | 208 | 579 | 69 | 403 | 1.25e-21 | 98.6 |
| MS.gene98060.t1 | MTR_6g013050 | 28.875 | 329 | 164 | 11 | 238 | 538 | 146 | 432 | 1.40e-21 | 99.0 |
| MS.gene98060.t1 | MTR_6g013050 | 28.875 | 329 | 164 | 11 | 238 | 538 | 146 | 432 | 1.72e-21 | 99.0 |
| MS.gene98060.t1 | MTR_0188s0020 | 25.867 | 375 | 209 | 14 | 238 | 587 | 119 | 449 | 4.85e-20 | 94.0 |
| MS.gene98060.t1 | MTR_2g020270 | 89.362 | 47 | 3 | 1 | 111 | 155 | 33 | 79 | 1.88e-19 | 83.6 |
| MS.gene98060.t1 | MTR_4g037105 | 25.676 | 370 | 206 | 14 | 238 | 582 | 113 | 438 | 3.31e-18 | 88.2 |
| MS.gene98060.t1 | MTR_1g112630 | 24.595 | 370 | 210 | 13 | 238 | 582 | 115 | 440 | 3.67e-17 | 85.1 |
| MS.gene98060.t1 | MTR_7g405800 | 82.143 | 28 | 5 | 0 | 224 | 251 | 1 | 28 | 6.26e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98060.t1 | AT1G13750 | 74.135 | 607 | 157 | 0 | 6 | 612 | 7 | 613 | 0.0 | 960 |
| MS.gene98060.t1 | AT5G50400 | 68.144 | 609 | 188 | 3 | 8 | 612 | 5 | 611 | 0.0 | 884 |
| MS.gene98060.t1 | AT4G24890 | 64.489 | 597 | 206 | 3 | 18 | 611 | 21 | 614 | 0.0 | 835 |
| MS.gene98060.t1 | AT5G50400 | 72.340 | 517 | 142 | 1 | 96 | 612 | 24 | 539 | 0.0 | 815 |
| MS.gene98060.t1 | AT1G13900 | 30.542 | 609 | 305 | 26 | 45 | 590 | 24 | 577 | 3.38e-62 | 218 |
| MS.gene98060.t1 | AT2G03450 | 30.478 | 607 | 320 | 24 | 40 | 590 | 17 | 577 | 3.95e-60 | 212 |
| MS.gene98060.t1 | AT3G52810 | 26.361 | 349 | 205 | 11 | 238 | 581 | 107 | 408 | 3.13e-23 | 103 |
| MS.gene98060.t1 | AT4G13700 | 27.576 | 330 | 167 | 9 | 238 | 538 | 140 | 426 | 4.54e-23 | 103 |
| MS.gene98060.t1 | AT3G52820 | 27.273 | 341 | 197 | 12 | 252 | 581 | 104 | 404 | 7.47e-23 | 102 |
| MS.gene98060.t1 | AT3G52780 | 25.762 | 361 | 196 | 11 | 238 | 581 | 100 | 405 | 7.79e-23 | 102 |
| MS.gene98060.t1 | AT3G07130 | 27.744 | 328 | 168 | 11 | 238 | 538 | 140 | 425 | 1.35e-21 | 99.4 |
| MS.gene98060.t1 | AT3G20500 | 26.259 | 278 | 177 | 8 | 312 | 583 | 150 | 405 | 2.90e-21 | 97.4 |
| MS.gene98060.t1 | AT2G27190 | 26.230 | 366 | 209 | 13 | 238 | 582 | 118 | 443 | 7.58e-20 | 93.2 |
| MS.gene98060.t1 | AT5G34850 | 25.266 | 376 | 225 | 14 | 238 | 594 | 112 | 450 | 2.66e-19 | 91.7 |
| MS.gene98060.t1 | AT4G13700 | 26.712 | 292 | 152 | 8 | 238 | 500 | 140 | 398 | 3.53e-18 | 87.8 |
| MS.gene98060.t1 | AT1G56360 | 24.932 | 365 | 216 | 12 | 238 | 583 | 114 | 439 | 8.92e-18 | 87.0 |
| MS.gene98060.t1 | AT2G32770 | 25.882 | 340 | 172 | 11 | 238 | 539 | 149 | 446 | 8.06e-17 | 84.3 |
| MS.gene98060.t1 | AT2G32770 | 25.882 | 340 | 172 | 11 | 238 | 539 | 68 | 365 | 8.56e-17 | 83.6 |
| MS.gene98060.t1 | AT3G07130 | 25.356 | 351 | 180 | 12 | 238 | 538 | 140 | 458 | 1.02e-16 | 84.0 |
| MS.gene98060.t1 | AT2G16430 | 26.978 | 278 | 152 | 11 | 330 | 582 | 71 | 322 | 2.03e-15 | 78.6 |
| MS.gene98060.t1 | AT2G16430 | 26.259 | 278 | 154 | 10 | 330 | 582 | 191 | 442 | 8.48e-15 | 77.8 |
| MS.gene98060.t1 | AT2G18130 | 25.347 | 288 | 170 | 8 | 330 | 594 | 168 | 433 | 1.29e-14 | 77.0 |
Find 143 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATAAGGGAACCTTAAA+TGG | 0.132659 | 5.4:-36155192 | MS.gene98060:CDS |
| AATATGTATGGTCCCATTTA+AGG | 0.145086 | 5.4:+36155179 | None:intergenic |
| TTACTTCTCTTAAAACTAAA+TGG | 0.183814 | 5.4:-36155122 | MS.gene98060:CDS |
| AGAATCCATGTTCCCATAAA+AGG | 0.275551 | 5.4:+36157753 | None:intergenic |
| TGTTGAAGATACCTGGTATA+TGG | 0.281195 | 5.4:+36155367 | None:intergenic |
| TTACAACGTGTGGTCATATT+TGG | 0.288462 | 5.4:-36158509 | MS.gene98060:CDS |
| AACCATGAGCGCGACTGGCC+TGG | 0.293808 | 5.4:-36157784 | MS.gene98060:CDS |
| CATAACTTATATCTCCAATA+TGG | 0.299698 | 5.4:+36157984 | None:intergenic |
| TGAAGAGAAACACAACTATA+AGG | 0.300650 | 5.4:-36155205 | MS.gene98060:CDS |
| TGTACATGATCCCTTCCTTT+TGG | 0.300778 | 5.4:+36160068 | None:intergenic |
| TGTGGTCATATTTGGTGATA+TGG | 0.300904 | 5.4:-36158501 | MS.gene98060:CDS |
| TCTACATGTCCAAAAGAAAA+TGG | 0.321458 | 5.4:-36162985 | MS.gene98060:CDS |
| CAATTCCCTCAATTCATGAT+TGG | 0.324051 | 5.4:-36163294 | MS.gene98060:CDS |
| CTGGAAATTGTTGTATTCAT+TGG | 0.325510 | 5.4:+36158069 | None:intergenic |
| ATCCAGACATATACCTTAAT+AGG | 0.327661 | 5.4:+36162931 | None:intergenic |
| AAAGTATCTCCATCACTTCT+TGG | 0.329610 | 5.4:-36163444 | MS.gene98060:CDS |
| CGAGGGTAAACTGGTGCATT+TGG | 0.330430 | 5.4:+36160284 | None:intergenic |
| GTAACATGGACAAGTGGATA+TGG | 0.333358 | 5.4:-36160125 | MS.gene98060:CDS |
| CTTCAAACAGAGCAAAATTC+TGG | 0.335864 | 5.4:-36157684 | MS.gene98060:intron |
| GTCAGGTATTCAATTGACTA+TGG | 0.343414 | 5.4:-36155671 | MS.gene98060:intron |
| CAAGTTCATTGAGCATTGTT+TGG | 0.348514 | 5.4:-36155588 | MS.gene98060:CDS |
| ATCTTTAAAGACTATGATTA+CGG | 0.354471 | 5.4:-36155096 | MS.gene98060:CDS |
| CAATCATGAATTGAGGGAAT+TGG | 0.374915 | 5.4:+36163295 | None:intergenic |
| ACCATGAGCGCGACTGGCCT+GGG | 0.378743 | 5.4:-36157783 | MS.gene98060:CDS |
| ATTGTGTTCTGCACCTATTA+AGG | 0.382197 | 5.4:-36162944 | MS.gene98060:intron |
| TTCGACACTGCCACTAGCTT+TGG | 0.390531 | 5.4:+36160326 | None:intergenic |
| CACGATGCCATTGTTGCACT+TGG | 0.394069 | 5.4:+36154937 | None:intergenic |
| ATTATGCACATGACCATAGA+TGG | 0.402255 | 5.4:+36155406 | None:intergenic |
| CGCCATCCTACTGATCTTGC+TGG | 0.404385 | 5.4:+36159358 | None:intergenic |
| CCCTCAATTCATGATTGGAT+TGG | 0.408408 | 5.4:-36163289 | MS.gene98060:CDS |
| TCATGAATGGAACATACATT+TGG | 0.414008 | 5.4:-36158580 | MS.gene98060:CDS |
| TTCCTTGCACATCGGGTACT+TGG | 0.421068 | 5.4:-36155530 | MS.gene98060:CDS |
| TGAAGGCTCTCTCTCCCCAT+TGG | 0.421188 | 5.4:+36155461 | None:intergenic |
| AGTGCCAGACGAGGGTAAAC+TGG | 0.422688 | 5.4:+36160275 | None:intergenic |
| AATCCTCAGTACAAAACAAC+TGG | 0.426614 | 5.4:-36162782 | MS.gene98060:CDS |
| CATATTGTTGCTGGTGGTGG+TGG | 0.426694 | 5.4:-36155162 | MS.gene98060:CDS |
| GTGGGAACCATGAGCGCGAC+TGG | 0.434292 | 5.4:-36157789 | MS.gene98060:CDS |
| CAGTACAAAACAACTGGAAA+AGG | 0.443401 | 5.4:-36162776 | MS.gene98060:CDS |
| GAGCGCGACTGGCCTGGGTC+AGG | 0.444203 | 5.4:-36157778 | MS.gene98060:CDS |
| AACTATCCGTGGCGCAAGCC+AGG | 0.448515 | 5.4:+36154962 | None:intergenic |
| GAAGAGAAACACAACTATAA+GGG | 0.450215 | 5.4:-36155204 | MS.gene98060:CDS |
| GAATATAAGAAGAGCAGAGA+TGG | 0.453713 | 5.4:-36155030 | MS.gene98060:CDS |
| TAAGGCACAGCTGATGCAAT+TGG | 0.459159 | 5.4:+36157914 | None:intergenic |
| AAATTCCAAGAAGAAAACTT+TGG | 0.459212 | 5.4:+36163575 | None:intergenic |
| TAACTTGTGTGTATGTATCC+AGG | 0.465019 | 5.4:+36159331 | None:intergenic |
| TTTGGACCCCATTCAACAAA+AGG | 0.470738 | 5.4:+36160086 | None:intergenic |
| GTTGAAGATACCTGGTATAT+GGG | 0.472033 | 5.4:+36155368 | None:intergenic |
| TAAGAAGAGCAGAGATGGGA+AGG | 0.472432 | 5.4:-36155025 | MS.gene98060:CDS |
| AAAGACTTCTGCCCAGGAAA+AGG | 0.474049 | 5.4:+36158530 | None:intergenic |
| AAGGTGGACATTGCCATCTA+TGG | 0.477668 | 5.4:-36155419 | MS.gene98060:CDS |
| TGATGTGAGCAAGGTGAAGA+AGG | 0.478005 | 5.4:+36163466 | None:intergenic |
| AATATAAGAAGAGCAGAGAT+GGG | 0.478209 | 5.4:-36155029 | MS.gene98060:CDS |
| GGGTCATTTGCTGAACCAAT+GGG | 0.484546 | 5.4:-36155476 | MS.gene98060:CDS |
| ACCCAGGCCAGTCGCGCTCA+TGG | 0.485318 | 5.4:+36157782 | None:intergenic |
| GCTAGTCTTCCTTGCACATC+GGG | 0.487138 | 5.4:-36155537 | MS.gene98060:CDS |
| TCCAATCCAATCATGAATTG+AGG | 0.489102 | 5.4:+36163288 | None:intergenic |
| GGAGATATAAGTTATGCAAA+TGG | 0.489944 | 5.4:-36157977 | MS.gene98060:CDS |
| TTCACTCGTGATAGCTTATG+TGG | 0.495544 | 5.4:-36160023 | MS.gene98060:intron |
| ATAGGGTCAAACTTCGGAAT+GGG | 0.496122 | 5.4:-36163338 | MS.gene98060:intron |
| CACTACACAGCAGCTTATCC+AGG | 0.496675 | 5.4:-36158032 | MS.gene98060:CDS |
| ACTATAAGGGAACCTTAAAT+GGG | 0.498012 | 5.4:-36155191 | MS.gene98060:CDS |
| TAAGAGAAGTAAATGTTGAA+AGG | 0.498399 | 5.4:+36155133 | None:intergenic |
| TGCACCAGTTTACCCTCGTC+TGG | 0.498904 | 5.4:-36160279 | MS.gene98060:CDS |
| TTTGTTGAATGGGGTCCAAA+AGG | 0.501734 | 5.4:-36160083 | MS.gene98060:CDS |
| TGCAGATATGAGTACAAGAT+AGG | 0.505403 | 5.4:-36158611 | MS.gene98060:intron |
| CTACAAAGGGTATGCTCACA+TGG | 0.510395 | 5.4:-36163534 | MS.gene98060:CDS |
| GAACTAACATACATTCTGTT+GGG | 0.510721 | 5.4:+36159292 | None:intergenic |
| GATCATGTACATTCACCTGC+TGG | 0.512159 | 5.4:-36160056 | MS.gene98060:CDS |
| AGAACTAACATACATTCTGT+TGG | 0.513603 | 5.4:+36159291 | None:intergenic |
| CATGTCCAAAAGAAAATGGT+AGG | 0.515005 | 5.4:-36162981 | MS.gene98060:CDS |
| CCATAAAAGGATCCTGACCC+AGG | 0.518178 | 5.4:+36157766 | None:intergenic |
| TGTATCTGTTATGCAGAAGA+GGG | 0.519842 | 5.4:-36155497 | MS.gene98060:CDS |
| ACCACCAGCAACAATATGTA+TGG | 0.519917 | 5.4:+36155167 | None:intergenic |
| CCAATCCAATCATGAATTGA+GGG | 0.520105 | 5.4:+36163289 | None:intergenic |
| TTGAATGGGGTCCAAAAGGA+AGG | 0.520749 | 5.4:-36160079 | MS.gene98060:CDS |
| CATATTTGGTGATATGGGGA+AGG | 0.522150 | 5.4:-36158495 | MS.gene98060:intron |
| GGGACCATACATATTGTTGC+TGG | 0.522851 | 5.4:-36155171 | MS.gene98060:CDS |
| TTGCTGACACTGAACATGAT+TGG | 0.523191 | 5.4:-36155631 | MS.gene98060:CDS |
| CTGTGCCTTATATGATTGCA+AGG | 0.523779 | 5.4:-36157901 | MS.gene98060:intron |
| TATAGGGTCAAACTTCGGAA+TGG | 0.525311 | 5.4:-36163339 | MS.gene98060:intron |
| GGGGTCATTTGCTGAACCAA+TGG | 0.526077 | 5.4:-36155477 | MS.gene98060:CDS |
| AGTACAAAACAACTGGAAAA+GGG | 0.526113 | 5.4:-36162775 | MS.gene98060:CDS |
| ATACATATTGTTGCTGGTGG+TGG | 0.526285 | 5.4:-36155165 | MS.gene98060:CDS |
| TAACATGGACAAGTGGATAT+GGG | 0.528908 | 5.4:-36160124 | MS.gene98060:CDS |
| ATAGGACACAAACTCATGAA+TGG | 0.529059 | 5.4:-36158593 | MS.gene98060:CDS |
| TCAGTAGGATGGCGTGACCC+TGG | 0.531425 | 5.4:-36159349 | MS.gene98060:CDS |
| TTGTATCTGTTATGCAGAAG+AGG | 0.535950 | 5.4:-36155498 | MS.gene98060:CDS |
| CGTTGTAAAGACTTCTGCCC+AGG | 0.537116 | 5.4:+36158524 | None:intergenic |
| CGACTCGTTCAAAATATCAC+GGG | 0.537803 | 5.4:-36154998 | MS.gene98060:CDS |
| ATCATGCAGGAGGAAGTTGA+TGG | 0.543293 | 5.4:-36158094 | MS.gene98060:intron |
| GTGGTCATATTTGGTGATAT+GGG | 0.543566 | 5.4:-36158500 | MS.gene98060:CDS |
| CAGTGTCAGCAACACAGAAA+CGG | 0.548388 | 5.4:+36155642 | None:intergenic |
| TAGTGTTAATTGAACCATGC+TGG | 0.549064 | 5.4:+36158050 | None:intergenic |
| GGCTAGTCTTCCTTGCACAT+CGG | 0.549971 | 5.4:-36155538 | MS.gene98060:CDS |
| AACTTGTGTGTATGTATCCA+GGG | 0.556625 | 5.4:+36159332 | None:intergenic |
| ACTGAACATGATTGGAGAGA+AGG | 0.557113 | 5.4:-36155623 | MS.gene98060:CDS |
| GTGGGATCAATTTACAGCAC+AGG | 0.563631 | 5.4:-36157942 | MS.gene98060:CDS |
| GTTTACCCTCGTCTGGCACT+AGG | 0.565323 | 5.4:-36160272 | MS.gene98060:CDS |
| GTGAAAGTCAGTGTCCCAGC+AGG | 0.566967 | 5.4:+36160041 | None:intergenic |
| ATCATGTACATTCACCTGCT+GGG | 0.571575 | 5.4:-36160055 | MS.gene98060:CDS |
| ACGGGATTATAGAGACATCC+TGG | 0.572144 | 5.4:-36154980 | MS.gene98060:CDS |
| GGTGCACCAGCAAGATCAGT+AGG | 0.579050 | 5.4:-36159364 | MS.gene98060:CDS |
| ATAGGTGCAGAACACAATAG+TGG | 0.583950 | 5.4:+36162949 | None:intergenic |
| ACGACTCGTTCAAAATATCA+CGG | 0.590797 | 5.4:-36154999 | MS.gene98060:CDS |
| AAAGCTGTGGCAGAAATACA+AGG | 0.590848 | 5.4:-36155438 | MS.gene98060:CDS |
| AAATGGATATCTTTCTCAGT+GGG | 0.591675 | 5.4:-36157960 | MS.gene98060:CDS |
| TATGGGAACATGGATTCTGG+AGG | 0.591887 | 5.4:-36157748 | MS.gene98060:CDS |
| GTTTCTATAGGGTCAAACTT+CGG | 0.592445 | 5.4:-36163344 | MS.gene98060:intron |
| GTCTGGCACTAGGAAAGTCA+TGG | 0.593589 | 5.4:-36160262 | MS.gene98060:CDS |
| GAGAGAGCCTTCAAAAGCTG+TGG | 0.594467 | 5.4:-36155451 | MS.gene98060:CDS |
| ACTTGTAGTCCAAGAAGTGA+TGG | 0.595780 | 5.4:+36163435 | None:intergenic |
| GATGTGAGCAAGGTGAAGAA+GGG | 0.598415 | 5.4:+36163467 | None:intergenic |
| TGGAGGAGAATGTGGTGTGT+TGG | 0.598776 | 5.4:-36157731 | MS.gene98060:CDS |
| GAATACAACAATTTCCAGCA+TGG | 0.599486 | 5.4:-36158064 | MS.gene98060:CDS |
| ACTAGGAAAGTCATGGAATG+AGG | 0.604186 | 5.4:-36160255 | MS.gene98060:intron |
| GACTTTCCTAGTGCCAGACG+AGG | 0.605583 | 5.4:+36160266 | None:intergenic |
| GGATCAATTTACAGCACAGG+TGG | 0.606810 | 5.4:-36157939 | MS.gene98060:CDS |
| AGACATCCTGGCTTGCGCCA+CGG | 0.607728 | 5.4:-36154968 | MS.gene98060:CDS |
| CACCAGCAAGATCAGTAGGA+TGG | 0.607953 | 5.4:-36159360 | MS.gene98060:CDS |
| TAGTTGTCCAAGTGCAACAA+TGG | 0.610822 | 5.4:-36154944 | MS.gene98060:CDS |
| GCAGAAGTCTTTACAACGTG+TGG | 0.611385 | 5.4:-36158519 | MS.gene98060:CDS |
| CTATCGATAGCCAAAGCTAG+TGG | 0.619573 | 5.4:-36160336 | MS.gene98060:intron |
| ATGTCCAAAAGAAAATGGTA+GGG | 0.621831 | 5.4:-36162980 | MS.gene98060:CDS |
| ATGGATTCTGGAGGAGAATG+TGG | 0.624834 | 5.4:-36157739 | MS.gene98060:CDS |
| ACCATACATATTGTTGCTGG+TGG | 0.627861 | 5.4:-36155168 | MS.gene98060:CDS |
| TGTGCAAGGAAGACTAGCCA+TGG | 0.631172 | 5.4:+36155542 | None:intergenic |
| GAGGACATGTCCCATATACC+AGG | 0.631695 | 5.4:-36155378 | MS.gene98060:intron |
| GAGATACTTTGATGTGAGCA+AGG | 0.635050 | 5.4:+36163457 | None:intergenic |
| GTCATGTGCATAATTATGAG+AGG | 0.636193 | 5.4:-36155397 | MS.gene98060:CDS |
| TGCACTTGGACAACTATCCG+TGG | 0.639058 | 5.4:+36154951 | None:intergenic |
| ATGACAGTAACATGGACAAG+TGG | 0.639189 | 5.4:-36160131 | MS.gene98060:CDS |
| GGTGCAGAACACAATAGTGG+TGG | 0.644622 | 5.4:+36162952 | None:intergenic |
| AACCAAGTACCCGATGTGCA+AGG | 0.647147 | 5.4:+36155528 | None:intergenic |
| GGACTTAGAAAACATTGACA+TGG | 0.651172 | 5.4:-36158011 | MS.gene98060:CDS |
| CAAATGGATATCTTTCTCAG+TGG | 0.658638 | 5.4:-36157961 | MS.gene98060:CDS |
| TAAAACAGATGACAGTAACA+TGG | 0.665597 | 5.4:-36160139 | MS.gene98060:intron |
| TGAATGGGGTCCAAAAGGAA+GGG | 0.668748 | 5.4:-36160078 | MS.gene98060:CDS |
| TGGTCATATTTGGTGATATG+GGG | 0.678756 | 5.4:-36158499 | MS.gene98060:CDS |
| GTATCTGTTATGCAGAAGAG+GGG | 0.694095 | 5.4:-36155496 | MS.gene98060:CDS |
| ACTTTCCTAGTGCCAGACGA+GGG | 0.705436 | 5.4:+36160267 | None:intergenic |
| CAAGTTATCTCAAAGAACTG+TGG | 0.721292 | 5.4:-36159315 | MS.gene98060:CDS |
| GGTCATTTGCTGAACCAATG+GGG | 0.724817 | 5.4:-36155475 | MS.gene98060:CDS |
| GCTGTGGCAGAAATACAAGG+TGG | 0.744681 | 5.4:-36155435 | MS.gene98060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 36154936 | 36163607 | 36154936 | ID=MS.gene98060 |
| chr5.4 | mRNA | 36154936 | 36163607 | 36154936 | ID=MS.gene98060.t1;Parent=MS.gene98060 |
| chr5.4 | exon | 36163437 | 36163607 | 36163437 | ID=MS.gene98060.t1.exon1;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36163437 | 36163607 | 36163437 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36163265 | 36163356 | 36163265 | ID=MS.gene98060.t1.exon2;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36163265 | 36163356 | 36163265 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36162945 | 36163011 | 36162945 | ID=MS.gene98060.t1.exon3;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36162945 | 36163011 | 36162945 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36162703 | 36162825 | 36162703 | ID=MS.gene98060.t1.exon4;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36162703 | 36162825 | 36162703 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36160256 | 36160348 | 36160256 | ID=MS.gene98060.t1.exon5;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36160256 | 36160348 | 36160256 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36160024 | 36160153 | 36160024 | ID=MS.gene98060.t1.exon6;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36160024 | 36160153 | 36160024 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36159304 | 36159385 | 36159304 | ID=MS.gene98060.t1.exon7;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36159304 | 36159385 | 36159304 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36158496 | 36158628 | 36158496 | ID=MS.gene98060.t1.exon8;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36158496 | 36158628 | 36158496 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36157902 | 36158107 | 36157902 | ID=MS.gene98060.t1.exon9;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36157902 | 36158107 | 36157902 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36157685 | 36157810 | 36157685 | ID=MS.gene98060.t1.exon10;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36157685 | 36157810 | 36157685 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36155379 | 36155688 | 36155379 | ID=MS.gene98060.t1.exon11;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36155379 | 36155688 | 36155379 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| chr5.4 | exon | 36154936 | 36155241 | 36154936 | ID=MS.gene98060.t1.exon12;Parent=MS.gene98060.t1 |
| chr5.4 | CDS | 36154936 | 36155241 | 36154936 | ID=cds.MS.gene98060.t1;Parent=MS.gene98060.t1 |
| Gene Sequence |
| Protein sequence |
