Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063970.t1 | XP_003614162.2 | 94.6 | 614 | 30 | 2 | 1 | 613 | 8 | 619 | 0.00E+00 | 1211.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063970.t1 | Q9LMX4 | 73.7 | 601 | 155 | 2 | 14 | 613 | 15 | 613 | 6.3e-276 | 951.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063970.t1 | G7JZ41 | 94.6 | 614 | 30 | 2 | 1 | 613 | 8 | 619 | 0.0e+00 | 1211.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene063970 | MS.gene35568 | PPI |
MS.gene011407 | MS.gene063970 | PPI |
MS.gene063970 | MS.gene49261 | PPI |
MS.gene022461 | MS.gene063970 | PPI |
MS.gene29801 | MS.gene063970 | PPI |
MS.gene063970 | MS.gene057175 | PPI |
MS.gene033368 | MS.gene063970 | PPI |
MS.gene063970 | MS.gene98300 | PPI |
MS.gene063970 | MS.gene022463 | PPI |
MS.gene29799 | MS.gene063970 | PPI |
MS.gene35570 | MS.gene063970 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063970.t1 | MTR_5g045600 | 94.625 | 614 | 30 | 2 | 1 | 613 | 8 | 619 | 0.0 | 1207 |
MS.gene063970.t1 | MTR_8g063080 | 74.794 | 607 | 149 | 3 | 9 | 613 | 8 | 612 | 0.0 | 966 |
MS.gene063970.t1 | MTR_4g103520 | 68.412 | 611 | 185 | 4 | 9 | 613 | 19 | 627 | 0.0 | 900 |
MS.gene063970.t1 | MTR_3g074930 | 67.851 | 619 | 188 | 4 | 4 | 613 | 7 | 623 | 0.0 | 876 |
MS.gene063970.t1 | MTR_3g074930 | 67.093 | 626 | 188 | 5 | 4 | 613 | 7 | 630 | 0.0 | 870 |
MS.gene063970.t1 | MTR_4g103520 | 71.558 | 552 | 153 | 3 | 64 | 613 | 1 | 550 | 0.0 | 857 |
MS.gene063970.t1 | MTR_3g074970 | 64.000 | 475 | 123 | 4 | 140 | 613 | 100 | 527 | 0.0 | 630 |
MS.gene063970.t1 | MTR_3g074970 | 65.385 | 104 | 36 | 0 | 510 | 613 | 3 | 106 | 2.34e-35 | 140 |
MS.gene063970.t1 | MTR_3g074960 | 50.610 | 492 | 168 | 9 | 4 | 465 | 7 | 453 | 2.02e-159 | 464 |
MS.gene063970.t1 | MTR_1g052505 | 36.380 | 558 | 294 | 17 | 77 | 593 | 78 | 615 | 6.06e-105 | 330 |
MS.gene063970.t1 | MTR_4g037670 | 36.077 | 571 | 305 | 16 | 62 | 593 | 85 | 634 | 8.74e-103 | 325 |
MS.gene063970.t1 | MTR_4g082930 | 31.286 | 521 | 282 | 21 | 124 | 591 | 83 | 580 | 7.82e-57 | 203 |
MS.gene063970.t1 | MTR_4g082940 | 28.983 | 521 | 279 | 20 | 124 | 591 | 84 | 566 | 5.09e-47 | 175 |
MS.gene063970.t1 | MTR_6g005650 | 64.789 | 71 | 24 | 1 | 181 | 250 | 10 | 80 | 3.47e-25 | 106 |
MS.gene063970.t1 | MTR_3g083820 | 26.591 | 440 | 234 | 16 | 138 | 539 | 44 | 432 | 1.25e-24 | 108 |
MS.gene063970.t1 | MTR_7g104360 | 25.420 | 417 | 227 | 14 | 181 | 582 | 58 | 405 | 1.61e-24 | 107 |
MS.gene063970.t1 | MTR_3g083810 | 26.879 | 439 | 234 | 17 | 138 | 539 | 44 | 432 | 1.64e-24 | 108 |
MS.gene063970.t1 | MTR_7g104330 | 24.242 | 429 | 257 | 15 | 181 | 602 | 65 | 432 | 1.02e-23 | 104 |
MS.gene063970.t1 | MTR_1g060360 | 24.146 | 410 | 248 | 13 | 181 | 586 | 57 | 407 | 3.08e-23 | 103 |
MS.gene063970.t1 | MTR_7g056403 | 29.091 | 330 | 163 | 11 | 237 | 539 | 146 | 431 | 1.28e-22 | 102 |
MS.gene063970.t1 | MTR_3g051240 | 25.485 | 361 | 212 | 12 | 237 | 591 | 99 | 408 | 1.64e-21 | 98.2 |
MS.gene063970.t1 | MTR_0188s0020 | 26.260 | 377 | 207 | 14 | 237 | 588 | 119 | 449 | 2.17e-21 | 98.2 |
MS.gene063970.t1 | MTR_4g115670 | 26.134 | 463 | 277 | 18 | 152 | 595 | 35 | 451 | 2.82e-21 | 97.8 |
MS.gene063970.t1 | MTR_6g013050 | 28.399 | 331 | 165 | 11 | 237 | 539 | 146 | 432 | 3.63e-21 | 97.8 |
MS.gene063970.t1 | MTR_6g013050 | 28.399 | 331 | 165 | 11 | 237 | 539 | 146 | 432 | 5.24e-21 | 97.4 |
MS.gene063970.t1 | MTR_5g092360 | 27.692 | 260 | 154 | 8 | 329 | 580 | 170 | 403 | 2.52e-20 | 94.4 |
MS.gene063970.t1 | MTR_4g037105 | 25.000 | 372 | 208 | 13 | 237 | 583 | 113 | 438 | 2.66e-18 | 88.6 |
MS.gene063970.t1 | MTR_2g020270 | 87.234 | 47 | 4 | 1 | 111 | 155 | 33 | 79 | 4.25e-18 | 79.7 |
MS.gene063970.t1 | MTR_1g112630 | 24.731 | 372 | 209 | 13 | 237 | 583 | 115 | 440 | 7.65e-18 | 87.0 |
MS.gene063970.t1 | MTR_7g405800 | 82.143 | 28 | 5 | 0 | 223 | 250 | 1 | 28 | 5.93e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063970.t1 | AT1G13750 | 72.683 | 615 | 164 | 3 | 1 | 613 | 1 | 613 | 0.0 | 936 |
MS.gene063970.t1 | AT5G50400 | 67.267 | 611 | 191 | 5 | 8 | 613 | 5 | 611 | 0.0 | 863 |
MS.gene063970.t1 | AT4G24890 | 63.819 | 597 | 211 | 4 | 18 | 612 | 21 | 614 | 0.0 | 815 |
MS.gene063970.t1 | AT5G50400 | 71.676 | 519 | 143 | 3 | 96 | 613 | 24 | 539 | 0.0 | 800 |
MS.gene063970.t1 | AT2G03450 | 30.033 | 606 | 325 | 24 | 40 | 591 | 17 | 577 | 5.96e-57 | 203 |
MS.gene063970.t1 | AT1G13900 | 29.885 | 609 | 310 | 27 | 45 | 591 | 24 | 577 | 3.33e-56 | 201 |
MS.gene063970.t1 | AT4G13700 | 26.515 | 396 | 205 | 12 | 183 | 539 | 78 | 426 | 8.85e-25 | 108 |
MS.gene063970.t1 | AT3G52780 | 25.508 | 443 | 241 | 16 | 160 | 582 | 32 | 405 | 2.03e-24 | 106 |
MS.gene063970.t1 | AT3G52820 | 26.822 | 343 | 198 | 12 | 251 | 582 | 104 | 404 | 5.60e-22 | 99.4 |
MS.gene063970.t1 | AT3G52780 | 27.083 | 336 | 181 | 11 | 181 | 506 | 55 | 336 | 8.97e-22 | 97.8 |
MS.gene063970.t1 | AT3G52810 | 25.926 | 351 | 206 | 11 | 237 | 582 | 107 | 408 | 1.24e-21 | 98.6 |
MS.gene063970.t1 | AT3G07130 | 28.182 | 330 | 166 | 12 | 237 | 539 | 140 | 425 | 1.65e-21 | 99.0 |
MS.gene063970.t1 | AT3G20500 | 26.374 | 273 | 173 | 8 | 318 | 584 | 155 | 405 | 7.43e-21 | 96.3 |
MS.gene063970.t1 | AT2G27190 | 26.359 | 368 | 208 | 13 | 237 | 583 | 118 | 443 | 4.52e-20 | 94.0 |
MS.gene063970.t1 | AT4G13700 | 25.698 | 358 | 190 | 11 | 183 | 501 | 78 | 398 | 8.17e-20 | 92.8 |
MS.gene063970.t1 | AT1G56360 | 24.113 | 423 | 252 | 15 | 183 | 584 | 65 | 439 | 2.22e-18 | 89.0 |
MS.gene063970.t1 | AT5G34850 | 25.132 | 378 | 225 | 15 | 237 | 595 | 112 | 450 | 3.27e-18 | 88.2 |
MS.gene063970.t1 | AT4G36350 | 24.796 | 367 | 216 | 13 | 237 | 584 | 114 | 439 | 1.60e-17 | 86.3 |
MS.gene063970.t1 | AT3G07130 | 25.779 | 353 | 178 | 13 | 237 | 539 | 140 | 458 | 1.14e-16 | 84.0 |
MS.gene063970.t1 | AT2G32770 | 25.439 | 342 | 173 | 11 | 237 | 540 | 149 | 446 | 2.30e-15 | 79.7 |
MS.gene063970.t1 | AT2G32770 | 25.439 | 342 | 173 | 11 | 237 | 540 | 68 | 365 | 2.93e-15 | 79.0 |
MS.gene063970.t1 | AT2G16430 | 26.978 | 278 | 152 | 11 | 331 | 583 | 71 | 322 | 3.36e-15 | 77.8 |
MS.gene063970.t1 | AT2G18130 | 25.347 | 288 | 170 | 8 | 331 | 595 | 168 | 433 | 3.99e-15 | 78.6 |
MS.gene063970.t1 | AT2G16430 | 26.978 | 278 | 152 | 11 | 331 | 583 | 191 | 442 | 1.22e-14 | 77.0 |
Find 144 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTATAAGGGAACATTAAA+TGG | 0.126548 | 5.2:-36216864 | MS.gene063970:CDS |
TTACTTCTCTTAAAACTAAA+TGG | 0.183814 | 5.2:-36216794 | MS.gene063970:CDS |
TGTACATGATTCCCTCCTTT+TGG | 0.276210 | 5.2:+36226502 | None:intergenic |
TTACAACGTGTGGTCATATT+TGG | 0.288462 | 5.2:-36225135 | MS.gene063970:CDS |
AGTTGAAGATACCTGGTATA+TGG | 0.293684 | 5.2:+36217530 | None:intergenic |
AACCATGAGCGCGACTGGCC+TGG | 0.293808 | 5.2:-36224402 | MS.gene063970:CDS |
CATCCAGACATATACCTTAA+TGG | 0.297130 | 5.2:+36234940 | None:intergenic |
TGAAGAGAAACACAACTATA+AGG | 0.298168 | 5.2:-36216877 | MS.gene063970:CDS |
TGTGGTCATATTTGGTGATA+TGG | 0.300904 | 5.2:-36225127 | MS.gene063970:CDS |
ATAACATGGACAAGTGGATA+TGG | 0.313837 | 5.2:-36226559 | MS.gene063970:CDS |
TCTACATGTCCAAAAGAAAA+TGG | 0.321458 | 5.2:-36234995 | MS.gene063970:CDS |
AAAGCATCTCCATCACTTCT+TGG | 0.323857 | 5.2:-36235433 | MS.gene063970:CDS |
CTGGAAATTGTTGTATTCAT+TGG | 0.325510 | 5.2:+36224696 | None:intergenic |
CGAGGGTAAACTGGTGCATT+TGG | 0.330430 | 5.2:+36226741 | None:intergenic |
CTTCAAACAGAGCAAAATTC+TGG | 0.335864 | 5.2:-36224302 | MS.gene063970:intron |
GTCAGGTATTCAATTGACTA+TGG | 0.343414 | 5.2:-36217834 | MS.gene063970:intron |
CAATTGATTCAATTCATGAT+TGG | 0.346303 | 5.2:-36235287 | MS.gene063970:CDS |
CAAGTTCATTGAGCATTGTT+TGG | 0.348514 | 5.2:-36217751 | MS.gene063970:CDS |
ATCTTTAAAGACTATGATTA+CGG | 0.354471 | 5.2:-36216768 | MS.gene063970:CDS |
ATCCAGACATATACCTTAAT+GGG | 0.376524 | 5.2:+36234941 | None:intergenic |
ACCATGAGCGCGACTGGCCT+GGG | 0.378743 | 5.2:-36224401 | MS.gene063970:CDS |
CCAATCTCTGATTTATTAGC+TGG | 0.385538 | 5.2:+36234713 | None:intergenic |
CAATCATGAATTGAATCAAT+TGG | 0.386090 | 5.2:+36235288 | None:intergenic |
TTCGACACTGCCACTAGCTT+TGG | 0.397462 | 5.2:+36226783 | None:intergenic |
ATTATGCACATGACCATAGA+TGG | 0.402255 | 5.2:+36217569 | None:intergenic |
CGCCATCCTACTGATCTTGC+TGG | 0.404385 | 5.2:+36225791 | None:intergenic |
CTGATGCAATTGGCTCCACC+TGG | 0.405260 | 5.2:+36224545 | None:intergenic |
AATCCTCAATACAAAACAAC+TGG | 0.409206 | 5.2:-36234754 | MS.gene063970:CDS |
CAATACAAAACAACTGGAAA+AGG | 0.420416 | 5.2:-36234748 | MS.gene063970:CDS |
TTCCTTGCACATCGGGTACT+TGG | 0.421068 | 5.2:-36217693 | MS.gene063970:CDS |
TGAAGGCTCTCTCTCCCCAT+TGG | 0.421188 | 5.2:+36217624 | None:intergenic |
AGTGCCAGACGAGGGTAAAC+TGG | 0.422688 | 5.2:+36226732 | None:intergenic |
GAAGAGAAACACAACTATAA+GGG | 0.423363 | 5.2:-36216876 | MS.gene063970:CDS |
CATATTGTTGCTGGTGGTGG+TGG | 0.426694 | 5.2:-36216834 | MS.gene063970:CDS |
GTTGAAGATACCTGGTATAT+GGG | 0.427979 | 5.2:+36217531 | None:intergenic |
GTGGGAACCATGAGCGCGAC+TGG | 0.434292 | 5.2:-36224407 | MS.gene063970:CDS |
AATACAAAACAACTGGAAAA+GGG | 0.440863 | 5.2:-36234747 | MS.gene063970:CDS |
GAGCGCGACTGGCCTGGGTC+AGG | 0.444203 | 5.2:-36224396 | MS.gene063970:CDS |
ATTGTGTTCTGCACCCATTA+AGG | 0.445134 | 5.2:-36234954 | MS.gene063970:intron |
TTTGGACCCCATTGAACAAA+AGG | 0.448036 | 5.2:+36226520 | None:intergenic |
GATTCAATTCATGATTGGAT+TGG | 0.450725 | 5.2:-36235282 | MS.gene063970:CDS |
CCAGCTAATAAATCAGAGAT+TGG | 0.451635 | 5.2:-36234713 | MS.gene063970:CDS |
GAATATAAGAAGAGCAGAGA+TGG | 0.453713 | 5.2:-36216702 | MS.gene063970:CDS |
TAAGGCACAGCTGATGCAAT+TGG | 0.459159 | 5.2:+36224535 | None:intergenic |
AAATTCCAAGAAGAAAACTT+TGG | 0.459212 | 5.2:+36235564 | None:intergenic |
TAACTTGTGTGTATGTATCC+AGG | 0.465019 | 5.2:+36225764 | None:intergenic |
CATGATGCCATTGTTGCACT+TGG | 0.466766 | 5.2:+36216609 | None:intergenic |
TAAGAAGAGCAGAGATGGGA+AGG | 0.472432 | 5.2:-36216697 | MS.gene063970:CDS |
AAAGACTTCTGCCCAGGAAA+AGG | 0.474049 | 5.2:+36225156 | None:intergenic |
AAGGTGGACATTGCCATCTA+TGG | 0.477668 | 5.2:-36217582 | MS.gene063970:CDS |
AATATAAGAAGAGCAGAGAT+GGG | 0.478209 | 5.2:-36216701 | MS.gene063970:CDS |
ACGGGATTATAGAGACATCT+TGG | 0.479544 | 5.2:-36216652 | MS.gene063970:CDS |
TTTGTTCAATGGGGTCCAAA+AGG | 0.483959 | 5.2:-36226517 | MS.gene063970:CDS |
GGGTCATTTGCTGAACCAAT+GGG | 0.484546 | 5.2:-36217639 | MS.gene063970:CDS |
ACCCAGGCCAGTCGCGCTCA+TGG | 0.485318 | 5.2:+36224400 | None:intergenic |
GCTAGTCTTCCTTGCACATC+GGG | 0.487138 | 5.2:-36217700 | MS.gene063970:CDS |
TGATGTGAGCAAGGTGAAGA+AGG | 0.489710 | 5.2:+36235455 | None:intergenic |
ACTATAAGGGAACATTAAAT+GGG | 0.491837 | 5.2:-36216863 | MS.gene063970:CDS |
TAAGAGAAGTAAATGTTGAA+AGG | 0.498399 | 5.2:+36216805 | None:intergenic |
TGCACCAGTTTACCCTCGTC+TGG | 0.498904 | 5.2:-36226736 | MS.gene063970:CDS |
GGAGATATAAGTTATGCAAA+TGG | 0.499815 | 5.2:-36224598 | MS.gene063970:CDS |
TGTAGGGTCAAACTTCAGAA+TGG | 0.502192 | 5.2:-36235332 | MS.gene063970:intron |
CACTACACAGCAGCTTATCC+AGG | 0.502214 | 5.2:-36224653 | MS.gene063970:CDS |
TGCAGATATGAGTACAAGAT+AGG | 0.505403 | 5.2:-36225237 | MS.gene063970:intron |
GTAGGGTCAAACTTCAGAAT+GGG | 0.507482 | 5.2:-36235331 | MS.gene063970:intron |
CTACAAAGGGCATGCTCACA+TGG | 0.510720 | 5.2:-36235523 | MS.gene063970:CDS |
GAACTAACATACATTCTGTT+GGG | 0.510721 | 5.2:+36225725 | None:intergenic |
AATCATGTACATTCACCTGC+TGG | 0.512159 | 5.2:-36226490 | MS.gene063970:CDS |
AGAACTAACATACATTCTGT+TGG | 0.513603 | 5.2:+36225724 | None:intergenic |
CATGTCCAAAAGAAAATGGT+AGG | 0.515005 | 5.2:-36234991 | MS.gene063970:CDS |
TGTATCTGTTATGCAGAAGA+GGG | 0.519842 | 5.2:-36217660 | MS.gene063970:CDS |
ACCACCAGCAACAATATGTA+TGG | 0.519917 | 5.2:+36216839 | None:intergenic |
TACTGTTACTTGAACCATGC+TGG | 0.521878 | 5.2:+36224677 | None:intergenic |
CATATTTGGTGATATGGGGA+AGG | 0.522150 | 5.2:-36225121 | MS.gene063970:intron |
GGGACCATACATATTGTTGC+TGG | 0.522851 | 5.2:-36216843 | MS.gene063970:CDS |
TTGCTGACACTGAACATGAT+TGG | 0.523191 | 5.2:-36217794 | MS.gene063970:CDS |
CTGTGCCTTATATGATTGCA+AGG | 0.523779 | 5.2:-36224522 | MS.gene063970:intron |
TAACATGGACAAGTGGATAT+GGG | 0.525257 | 5.2:-36226558 | MS.gene063970:CDS |
GGGGTCATTTGCTGAACCAA+TGG | 0.526077 | 5.2:-36217640 | MS.gene063970:CDS |
ATACATATTGTTGCTGGTGG+TGG | 0.526285 | 5.2:-36216837 | MS.gene063970:CDS |
TCAGTAGGATGGCGTGACCC+TGG | 0.531425 | 5.2:-36225782 | MS.gene063970:CDS |
TTCAATGGGGTCCAAAAGGA+GGG | 0.533245 | 5.2:-36226513 | MS.gene063970:CDS |
ATAGGACACAAACTCAAGAA+TGG | 0.533869 | 5.2:-36225219 | MS.gene063970:CDS |
TTGTATCTGTTATGCAGAAG+AGG | 0.535950 | 5.2:-36217661 | MS.gene063970:CDS |
CGTTGTAAAGACTTCTGCCC+AGG | 0.537116 | 5.2:+36225150 | None:intergenic |
CGACTCGTTCAAAATATCAC+GGG | 0.537803 | 5.2:-36216670 | MS.gene063970:CDS |
ATCATGCAGGAGGAAGTTGA+TGG | 0.543293 | 5.2:-36224721 | MS.gene063970:intron |
GTGGTCATATTTGGTGATAT+GGG | 0.543566 | 5.2:-36225126 | MS.gene063970:CDS |
CAGTGTCAGCAACACAGAAA+CGG | 0.548388 | 5.2:+36217805 | None:intergenic |
ACTTTCACTCATAGCTTATG+TGG | 0.548449 | 5.2:-36226460 | MS.gene063970:intron |
GTTCAATGGGGTCCAAAAGG+AGG | 0.548801 | 5.2:-36226514 | MS.gene063970:CDS |
GGCTAGTCTTCCTTGCACAT+CGG | 0.549971 | 5.2:-36217701 | MS.gene063970:CDS |
AACTTGTGTGTATGTATCCA+GGG | 0.556625 | 5.2:+36225765 | None:intergenic |
GTGGGATCAATTTACAGCCC+AGG | 0.556903 | 5.2:-36224563 | MS.gene063970:CDS |
ACTGAACATGATTGGAGAGA+AGG | 0.557113 | 5.2:-36217786 | MS.gene063970:CDS |
ATCATGTACATTCACCTGCT+GGG | 0.564921 | 5.2:-36226489 | MS.gene063970:CDS |
GTTTACCCTCGTCTGGCACT+AGG | 0.565323 | 5.2:-36226729 | MS.gene063970:CDS |
GAGGACATGCCCCATATACC+AGG | 0.571356 | 5.2:-36217541 | MS.gene063970:intron |
GTGAAAGTCAGTGTCCCAGC+AGG | 0.578340 | 5.2:+36226475 | None:intergenic |
GGTGCACCAGCAAGATCAGT+AGG | 0.579050 | 5.2:-36225797 | MS.gene063970:CDS |
TGATGCAATTGGCTCCACCT+GGG | 0.580217 | 5.2:+36224546 | None:intergenic |
ACTAGGAAAGTCGTGGAATG+AGG | 0.581835 | 5.2:-36226712 | MS.gene063970:intron |
ATGGGTGCAGAACACAATAG+TGG | 0.583798 | 5.2:+36234959 | None:intergenic |
TCAAGAATGGAACATACACT+TGG | 0.587569 | 5.2:-36225206 | MS.gene063970:CDS |
ACGACTCGTTCAAAATATCA+CGG | 0.590797 | 5.2:-36216671 | MS.gene063970:CDS |
AAAGCTGTGGCAGAAATACA+AGG | 0.590848 | 5.2:-36217601 | MS.gene063970:CDS |
AAATGGATATCTTTCTCAGT+GGG | 0.591675 | 5.2:-36224581 | MS.gene063970:CDS |
ATACAAAACAACTGGAAAAG+GGG | 0.593757 | 5.2:-36234746 | MS.gene063970:CDS |
GAGAGAGCCTTCAAAAGCTG+TGG | 0.594467 | 5.2:-36217614 | MS.gene063970:CDS |
GATGTGAGCAAGGTGAAGAA+GGG | 0.598415 | 5.2:+36235456 | None:intergenic |
TGGAGGAGAATGTGGTGTGT+TGG | 0.598776 | 5.2:-36224349 | MS.gene063970:CDS |
GAATACAACAATTTCCAGCA+TGG | 0.599486 | 5.2:-36224691 | MS.gene063970:CDS |
ACTTGGAGTCCAAGAAGTGA+TGG | 0.601746 | 5.2:+36235424 | None:intergenic |
AGACATCTTGGCTTGCGCCA+CGG | 0.607728 | 5.2:-36216640 | MS.gene063970:CDS |
CACCAGCAAGATCAGTAGGA+TGG | 0.607953 | 5.2:-36225793 | MS.gene063970:CDS |
TAGTTGTCCAAGTGCAACAA+TGG | 0.610822 | 5.2:-36216616 | MS.gene063970:CDS |
GCAGAAGTCTTTACAACGTG+TGG | 0.611385 | 5.2:-36225145 | MS.gene063970:CDS |
TTGAAGATACCTGGTATATG+GGG | 0.611539 | 5.2:+36217532 | None:intergenic |
TATGGGAACATGGATTCTGG+AGG | 0.614193 | 5.2:-36224366 | MS.gene063970:CDS |
CTGTTGGCAGCCAAAGCTAG+TGG | 0.618169 | 5.2:-36226793 | MS.gene063970:intron |
ATGTCCAAAAGAAAATGGTA+GGG | 0.621831 | 5.2:-36234990 | MS.gene063970:CDS |
GTCTGGCACTAGGAAAGTCG+TGG | 0.622998 | 5.2:-36226719 | MS.gene063970:CDS |
ATGGATTCTGGAGGAGAATG+TGG | 0.624834 | 5.2:-36224357 | MS.gene063970:CDS |
GACTTTCCTAGTGCCAGACG+AGG | 0.626017 | 5.2:+36226723 | None:intergenic |
ACCATACATATTGTTGCTGG+TGG | 0.627861 | 5.2:-36216840 | MS.gene063970:CDS |
ACGATGGTCTTACATTTGAG+AGG | 0.630170 | 5.2:+36234662 | None:intergenic |
TGTGCAAGGAAGACTAGCCA+TGG | 0.631172 | 5.2:+36217705 | None:intergenic |
GTCATGTGCATAATTATGAG+AGG | 0.636193 | 5.2:-36217560 | MS.gene063970:CDS |
CATAACTTATATCTCCAATG+TGG | 0.638374 | 5.2:+36224605 | None:intergenic |
TGCACTTGGACAACTATCCG+TGG | 0.639058 | 5.2:+36216623 | None:intergenic |
ATGACTATAACATGGACAAG+TGG | 0.639189 | 5.2:-36226565 | MS.gene063970:CDS |
GGATCAATTTACAGCCCAGG+TGG | 0.641444 | 5.2:-36224560 | MS.gene063970:CDS |
AACCAAGTACCCGATGTGCA+AGG | 0.647147 | 5.2:+36217691 | None:intergenic |
GGACTTAGAAAACATTGACA+TGG | 0.651172 | 5.2:-36224632 | MS.gene063970:CDS |
GAGATGCTTTGATGTGAGCA+AGG | 0.657715 | 5.2:+36235446 | None:intergenic |
CAAATGGATATCTTTCTCAG+TGG | 0.658638 | 5.2:-36224582 | MS.gene063970:CDS |
GGTGCAGAACACAATAGTGG+TGG | 0.658962 | 5.2:+36234962 | None:intergenic |
TAAAATAGATGACTATAACA+TGG | 0.659053 | 5.2:-36226573 | MS.gene063970:intron |
TGGTCATATTTGGTGATATG+GGG | 0.678756 | 5.2:-36225125 | MS.gene063970:CDS |
GTATCTGTTATGCAGAAGAG+GGG | 0.694095 | 5.2:-36217659 | MS.gene063970:CDS |
ACTTTCCTAGTGCCAGACGA+GGG | 0.717855 | 5.2:+36226724 | None:intergenic |
CAAGTTATCTCAAAGAACTG+TGG | 0.721292 | 5.2:-36225748 | MS.gene063970:CDS |
GGTCATTTGCTGAACCAATG+GGG | 0.724817 | 5.2:-36217638 | MS.gene063970:CDS |
GCTGTGGCAGAAATACAAGG+TGG | 0.744681 | 5.2:-36217598 | MS.gene063970:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 36216608 | 36235596 | 36216608 | ID=MS.gene063970 |
chr5.2 | mRNA | 36216608 | 36235596 | 36216608 | ID=MS.gene063970.t1;Parent=MS.gene063970 |
chr5.2 | exon | 36235426 | 36235596 | 36235426 | ID=MS.gene063970.t1.exon1;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36235426 | 36235596 | 36235426 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36235258 | 36235349 | 36235258 | ID=MS.gene063970.t1.exon2;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36235258 | 36235349 | 36235258 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36234955 | 36235021 | 36234955 | ID=MS.gene063970.t1.exon3;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36234955 | 36235021 | 36234955 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36234675 | 36234797 | 36234675 | ID=MS.gene063970.t1.exon4;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36234675 | 36234797 | 36234675 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36226713 | 36226805 | 36226713 | ID=MS.gene063970.t1.exon5;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36226713 | 36226805 | 36226713 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36226461 | 36226587 | 36226461 | ID=MS.gene063970.t1.exon6;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36226461 | 36226587 | 36226461 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36225737 | 36225818 | 36225737 | ID=MS.gene063970.t1.exon7;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36225737 | 36225818 | 36225737 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36225122 | 36225254 | 36225122 | ID=MS.gene063970.t1.exon8;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36225122 | 36225254 | 36225122 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36224523 | 36224734 | 36224523 | ID=MS.gene063970.t1.exon9;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36224523 | 36224734 | 36224523 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36224303 | 36224428 | 36224303 | ID=MS.gene063970.t1.exon10;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36224303 | 36224428 | 36224303 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36217542 | 36217851 | 36217542 | ID=MS.gene063970.t1.exon11;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36217542 | 36217851 | 36217542 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
chr5.2 | exon | 36216608 | 36216913 | 36216608 | ID=MS.gene063970.t1.exon12;Parent=MS.gene063970.t1 |
chr5.2 | CDS | 36216608 | 36216913 | 36216608 | ID=cds.MS.gene063970.t1;Parent=MS.gene063970.t1 |
Gene Sequence |
Protein sequence |