Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023794.t1 | PNX71235.1 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 6.70E-122 | 446.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023794.t1 | Q9LQ73 | 81.2 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 1.7e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023794.t1 | A0A2K3KY74 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 4.8e-122 | 446.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023794 | MS.gene42234 | PPI |
| MS.gene27646 | MS.gene023794 | PPI |
| MS.gene023794 | MS.gene52171 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023794.t1 | MTR_7g076200 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 1.01e-165 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023794.t1 | AT1G01820 | 81.250 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 1.16e-138 | 389 |
| MS.gene023794.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.99e-135 | 379 |
| MS.gene023794.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.99e-135 | 379 |
| MS.gene023794.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.99e-135 | 379 |
| MS.gene023794.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.34e-129 | 366 |
| MS.gene023794.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.34e-129 | 366 |
| MS.gene023794.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.34e-129 | 366 |
Find 62 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGAGCTTGGAAGACTTTC+TGG | 0.141997 | 7.1:+27011970 | MS.gene023794:CDS |
| ATACCTTTCCCAACAGAATT+AGG | 0.150440 | 7.1:-27011499 | None:intergenic |
| TTCTCCATTACTCAAGAATT+TGG | 0.176496 | 7.1:-27011033 | None:intergenic |
| AGCTCGGACAGCAGCTATTT+TGG | 0.221592 | 7.1:-27012488 | None:intergenic |
| TACCTTTCCCAACAGAATTA+GGG | 0.287612 | 7.1:-27011498 | None:intergenic |
| CCCCGTGTTACCGGGGCATT+TGG | 0.290157 | 7.1:+27012259 | MS.gene023794:CDS |
| GATTTCTCTCTACTGTTGGC+TGG | 0.307117 | 7.1:+27011795 | MS.gene023794:CDS |
| ATCTCTAATATCTTGCTATC+AGG | 0.317696 | 7.1:+27012291 | MS.gene023794:CDS |
| AAAGTCACTCCCCGTGTTAC+CGG | 0.327800 | 7.1:+27012250 | MS.gene023794:CDS |
| AGTGGACAGCAATGCATTCT+TGG | 0.368945 | 7.1:-27011601 | None:intergenic |
| AGGGGTGTACCCTGTGGTGA+TGG | 0.409784 | 7.1:-27011473 | None:intergenic |
| GCCGGATTTCTCTCTACTGT+TGG | 0.411303 | 7.1:+27011791 | MS.gene023794:CDS |
| CTTGATCAATTTGTGTGGCT+TGG | 0.417533 | 7.1:+27011633 | MS.gene023794:CDS |
| ATATGCAGAGCGATACAATA+TGG | 0.438108 | 7.1:+27011008 | MS.gene023794:CDS |
| TTTGATTAGCTCGGGGAGCT+TGG | 0.445739 | 7.1:+27011958 | MS.gene023794:intron |
| AATATGTACCTCCTTGGTTG+AGG | 0.447824 | 7.1:+27011825 | MS.gene023794:CDS |
| TTCTGATAGCTTTAGCAGCT+CGG | 0.456319 | 7.1:-27012504 | None:intergenic |
| TTCCTCAATATGTACCTCCT+TGG | 0.461177 | 7.1:+27011819 | MS.gene023794:CDS |
| TTTGTGTGGCTTGGCAGAAC+CGG | 0.466339 | 7.1:+27011642 | MS.gene023794:CDS |
| AGAAATCCGGCCAACTAGTT+CGG | 0.469145 | 7.1:-27011779 | None:intergenic |
| GGTTCCAAATTCTTGAGTAA+TGG | 0.475299 | 7.1:+27011029 | MS.gene023794:CDS |
| AACACGGGGAGTGACTTTCT+CGG | 0.476441 | 7.1:-27012245 | None:intergenic |
| TCAACATTCTGCGCTTTACC+AGG | 0.477818 | 7.1:-27011056 | None:intergenic |
| AAGTCACTCCCCGTGTTACC+GGG | 0.483116 | 7.1:+27012251 | MS.gene023794:CDS |
| ATTTCTCTCTACTGTTGGCT+GGG | 0.484195 | 7.1:+27011796 | MS.gene023794:CDS |
| ATCCAAATGCCCCGGTAACA+CGG | 0.484737 | 7.1:-27012261 | None:intergenic |
| TCCAAATGCCCCGGTAACAC+GGG | 0.487559 | 7.1:-27012260 | None:intergenic |
| ACACGGGGAGTGACTTTCTC+GGG | 0.492261 | 7.1:-27012244 | None:intergenic |
| GATGCAACCAGGGCAGAACT+TGG | 0.500278 | 7.1:+27010942 | MS.gene023794:CDS |
| TTGATCAAGAAACAAGAAAG+TGG | 0.509019 | 7.1:-27011619 | None:intergenic |
| TGCTACAGAGGTGTAGCAGA+TGG | 0.517681 | 7.1:+27012428 | MS.gene023794:intron |
| TTTATATTTGAACAAGGCTG+AGG | 0.519097 | 7.1:+27010974 | MS.gene023794:CDS |
| TTTGAACAAGGCTGAGGCAA+GGG | 0.529250 | 7.1:+27010980 | MS.gene023794:CDS |
| AACCAAGGAGGTACATATTG+AGG | 0.535412 | 7.1:-27011821 | None:intergenic |
| ACTCTTTCACTCATCAAAGC+AGG | 0.538753 | 7.1:+27012181 | MS.gene023794:CDS |
| TTCTTGAGTAATGGAGAACC+TGG | 0.539146 | 7.1:+27011038 | MS.gene023794:CDS |
| TGAGCACATTGGATGCAACC+AGG | 0.549904 | 7.1:+27010931 | MS.gene023794:CDS |
| AAGAAGGCCAAGTTCTGCCC+TGG | 0.549964 | 7.1:-27010949 | None:intergenic |
| TGTTTCTTGATCAATTTGTG+TGG | 0.551401 | 7.1:+27011628 | MS.gene023794:CDS |
| AGCAGTTGGACTGCTTCAGT+TGG | 0.552071 | 7.1:+27012219 | MS.gene023794:CDS |
| TCTGATAAGTCCATCACCAC+AGG | 0.563882 | 7.1:+27011463 | MS.gene023794:CDS |
| AGCATTGAAAATGAGCACAT+TGG | 0.576046 | 7.1:+27010920 | None:intergenic |
| ATTTGAACAAGGCTGAGGCA+AGG | 0.577561 | 7.1:+27010979 | MS.gene023794:CDS |
| GCCAACAGTAGAGAGAAATC+CGG | 0.577756 | 7.1:-27011792 | None:intergenic |
| ATTTCTTACGTCGATGACAC+CGG | 0.577930 | 7.1:-27011661 | None:intergenic |
| AGCGTACCGAACTAGTTGGC+CGG | 0.581306 | 7.1:+27011773 | MS.gene023794:CDS |
| GCTACAGAGGTGTAGCAGAT+GGG | 0.589217 | 7.1:+27012429 | MS.gene023794:intron |
| AAAGAGCGTACCGAACTAGT+TGG | 0.593530 | 7.1:+27011769 | MS.gene023794:CDS |
| TGTTCAAATATAAAACAAGA+AGG | 0.596092 | 7.1:-27010965 | None:intergenic |
| TGAAACAAATCCAAATGCCC+CGG | 0.597552 | 7.1:-27012269 | None:intergenic |
| ACCTTTCCCAACAGAATTAG+GGG | 0.608517 | 7.1:-27011497 | None:intergenic |
| GAGCACATTGGATGCAACCA+GGG | 0.617935 | 7.1:+27010932 | MS.gene023794:CDS |
| ATTGATACAGTGGTAGCAGT+TGG | 0.619234 | 7.1:+27012205 | MS.gene023794:CDS |
| GATGCAGAATGAGCAATACC+AGG | 0.621633 | 7.1:+27012132 | MS.gene023794:intron |
| ATGGACTTATCAGAGCATGC+AGG | 0.623130 | 7.1:-27011454 | None:intergenic |
| AGTCACTCCCCGTGTTACCG+GGG | 0.628907 | 7.1:+27012252 | MS.gene023794:CDS |
| CAAAGCAGGCATTGATACAG+TGG | 0.634472 | 7.1:+27012195 | MS.gene023794:CDS |
| CCAAATGCCCCGGTAACACG+GGG | 0.648543 | 7.1:-27012259 | None:intergenic |
| CTGATAAGTCCATCACCACA+GGG | 0.670101 | 7.1:+27011464 | MS.gene023794:CDS |
| CCTTTCCCAACAGAATTAGG+GGG | 0.673035 | 7.1:-27011496 | None:intergenic |
| TAAGCCACAAACCTCAACCA+AGG | 0.690033 | 7.1:-27011836 | None:intergenic |
| GCCACAAACCTCAACCAAGG+AGG | 0.724104 | 7.1:-27011833 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAAAGATTGAAA+AGG | - | chr7.1:27011548-27011567 | None:intergenic | 10.0% |
| !! | AAAAAAGTGAAGAAATAAAA+AGG | - | chr7.1:27011912-27011931 | None:intergenic | 15.0% |
| !! | TTATTACATGAACTAATTAA+TGG | - | chr7.1:27011402-27011421 | None:intergenic | 15.0% |
| !! | AAAAAAATCAACAAGACATT+AGG | - | chr7.1:27011572-27011591 | None:intergenic | 20.0% |
| !! | TATGCTTAATATTCTTTGTT+CGG | + | chr7.1:27011256-27011275 | MS.gene023794:intron | 20.0% |
| !! | TGTTCAAATATAAAACAAGA+AGG | - | chr7.1:27010968-27010987 | None:intergenic | 20.0% |
| !! | TTTAAACAAATCAATCATAG+AGG | - | chr7.1:27011219-27011238 | None:intergenic | 20.0% |
| !!! | TATGCAGATACAAAATTTTA+GGG | - | chr7.1:27012369-27012388 | None:intergenic | 20.0% |
| !!! | TCTTGTTTTATATTTGAACA+AGG | + | chr7.1:27010968-27010987 | MS.gene023794:CDS | 20.0% |
| ! | AGCTAAAAAAATCAAATGAG+AGG | + | chr7.1:27012158-27012177 | MS.gene023794:CDS | 25.0% |
| ! | ATAATACAGAAGCAAACAAA+AGG | - | chr7.1:27011704-27011723 | None:intergenic | 25.0% |
| ! | ATCCATAAGTAATAAAGGTA+AGG | - | chr7.1:27012115-27012134 | None:intergenic | 25.0% |
| ! | CACACAAAAAAAAGGATAAA+TGG | - | chr7.1:27011164-27011183 | None:intergenic | 25.0% |
| ! | CACATAAAATGTCATACAAT+AGG | - | chr7.1:27011938-27011957 | None:intergenic | 25.0% |
| ! | TTCCATGTCAGAAAATATAT+TGG | - | chr7.1:27011370-27011389 | None:intergenic | 25.0% |
| ! | TTCCTTACCTTTATTACTTA+TGG | + | chr7.1:27012110-27012129 | MS.gene023794:intron | 25.0% |
| !! | AAAAGTTTTTCGTCTATTCA+AGG | + | chr7.1:27011100-27011119 | MS.gene023794:CDS | 25.0% |
| !! | AAGAAATAAAAAGGCATGAT+TGG | - | chr7.1:27011903-27011922 | None:intergenic | 25.0% |
| !! | GTATGCAGATACAAAATTTT+AGG | - | chr7.1:27012370-27012389 | None:intergenic | 25.0% |
| !! | TTCCAATATATTTTCTGACA+TGG | + | chr7.1:27011365-27011384 | MS.gene023794:intron | 25.0% |
| !!! | AGTTTGCTTCTTATTTTTCT+TGG | + | chr7.1:27012340-27012359 | MS.gene023794:intron | 25.0% |
| !!! | CTCATTTGATTTTTTTAGCT+TGG | - | chr7.1:27012158-27012177 | None:intergenic | 25.0% |
| !!! | TTTTATGTGTTTGATTAGCT+CGG | + | chr7.1:27011949-27011968 | MS.gene023794:intron | 25.0% |
| AAAATGGGCACACAAAAAAA+AGG | - | chr7.1:27011172-27011191 | None:intergenic | 30.0% | |
| ATAAAATCCGTGTATAGTGT+TGG | - | chr7.1:27011733-27011752 | None:intergenic | 30.0% | |
| GAAGAATTTATACACATGCA+TGG | - | chr7.1:27012054-27012073 | None:intergenic | 30.0% | |
| TATAAAGCGTGTACCAAAAT+GGG | - | chr7.1:27011187-27011206 | None:intergenic | 30.0% | |
| TCTGCATCCATAAGTAATAA+AGG | - | chr7.1:27012120-27012139 | None:intergenic | 30.0% | |
| TGTTTCTTGATCAATTTGTG+TGG | + | chr7.1:27011628-27011647 | MS.gene023794:CDS | 30.0% | |
| TTATAAAGCGTGTACCAAAA+TGG | - | chr7.1:27011188-27011207 | None:intergenic | 30.0% | |
| TTATCATCCAACACTATACA+CGG | + | chr7.1:27011723-27011742 | MS.gene023794:intron | 30.0% | |
| TTCTCCATTACTCAAGAATT+TGG | - | chr7.1:27011036-27011055 | None:intergenic | 30.0% | |
| TTGATCAAGAAACAAGAAAG+TGG | - | chr7.1:27011622-27011641 | None:intergenic | 30.0% | |
| TTTATATTTGAACAAGGCTG+AGG | + | chr7.1:27010974-27010993 | MS.gene023794:CDS | 30.0% | |
| ! | ATCTCTAATATCTTGCTATC+AGG | + | chr7.1:27012291-27012310 | MS.gene023794:CDS | 30.0% |
| ! | GGAAAGGTATGATATTTCTT+AGG | + | chr7.1:27011512-27011531 | MS.gene023794:intron | 30.0% |
| ! | TATATTTGTTAGCATCAACG+AGG | - | chr7.1:27011874-27011893 | None:intergenic | 30.0% |
| ! | TTCTGTCTTTGGTTTACTTT+GGG | + | chr7.1:27012079-27012098 | MS.gene023794:intron | 30.0% |
| ! | TTTATGTGTTTGATTAGCTC+GGG | + | chr7.1:27011950-27011969 | MS.gene023794:intron | 30.0% |
| ! | TTTCTGTCTTTGGTTTACTT+TGG | + | chr7.1:27012078-27012097 | MS.gene023794:intron | 30.0% |
| ! | TTTTTCGTCTATTCAAGGTT+AGG | + | chr7.1:27011105-27011124 | MS.gene023794:intron | 30.0% |
| !!! | TTTTTTTTGTGTGCCCATTT+TGG | + | chr7.1:27011171-27011190 | MS.gene023794:intron | 30.0% |
| ATACCTTTCCCAACAGAATT+AGG | - | chr7.1:27011502-27011521 | None:intergenic | 35.0% | |
| ATATGCAGAGCGATACAATA+TGG | + | chr7.1:27011008-27011027 | MS.gene023794:CDS | 35.0% | |
| CTAAGGGACACAAGTATAAA+AGG | + | chr7.1:27011288-27011307 | MS.gene023794:intron | 35.0% | |
| GGTTCCAAATTCTTGAGTAA+TGG | + | chr7.1:27011029-27011048 | MS.gene023794:CDS | 35.0% | |
| TACCTTTCCCAACAGAATTA+GGG | - | chr7.1:27011501-27011520 | None:intergenic | 35.0% | |
| TTCTTCGAAGTTTCTGTCTT+TGG | + | chr7.1:27012068-27012087 | MS.gene023794:intron | 35.0% | |
| ! | AAAAACTTTTCGTGCTAAGC+TGG | - | chr7.1:27011090-27011109 | None:intergenic | 35.0% |
| ! | TTATGTGTTTGATTAGCTCG+GGG | + | chr7.1:27011951-27011970 | MS.gene023794:intron | 35.0% |
| !!! | TTGATTTTTTTAGCTTGGCC+TGG | - | chr7.1:27012153-27012172 | None:intergenic | 35.0% |
| AAGCAAACAAAAGGAGCTGA+TGG | - | chr7.1:27011695-27011714 | None:intergenic | 40.0% | |
| AATATGTACCTCCTTGGTTG+AGG | + | chr7.1:27011825-27011844 | MS.gene023794:CDS | 40.0% | |
| ACCTTTCCCAACAGAATTAG+GGG | - | chr7.1:27011500-27011519 | None:intergenic | 40.0% | |
| ACTCTTTCACTCATCAAAGC+AGG | + | chr7.1:27012181-27012200 | MS.gene023794:CDS | 40.0% | |
| ATTGATACAGTGGTAGCAGT+TGG | + | chr7.1:27012205-27012224 | MS.gene023794:CDS | 40.0% | |
| ATTTCTTACGTCGATGACAC+CGG | - | chr7.1:27011664-27011683 | None:intergenic | 40.0% | |
| CTTGATCAATTTGTGTGGCT+TGG | + | chr7.1:27011633-27011652 | MS.gene023794:CDS | 40.0% | |
| TGAAACAAATCCAAATGCCC+CGG | - | chr7.1:27012272-27012291 | None:intergenic | 40.0% | |
| TGTTCGGATCTGACTTCTAA+GGG | + | chr7.1:27011272-27011291 | MS.gene023794:intron | 40.0% | |
| TTCCTCAATATGTACCTCCT+TGG | + | chr7.1:27011819-27011838 | MS.gene023794:CDS | 40.0% | |
| TTGTTCGGATCTGACTTCTA+AGG | + | chr7.1:27011271-27011290 | MS.gene023794:intron | 40.0% | |
| ! | AACCAAGGAGGTACATATTG+AGG | - | chr7.1:27011824-27011843 | None:intergenic | 40.0% |
| ! | ATTTCTCTCTACTGTTGGCT+GGG | + | chr7.1:27011796-27011815 | MS.gene023794:CDS | 40.0% |
| ! | TTCTTGAGTAATGGAGAACC+TGG | + | chr7.1:27011038-27011057 | MS.gene023794:CDS | 40.0% |
| !! | TTCTGATAGCTTTAGCAGCT+CGG | - | chr7.1:27012507-27012526 | None:intergenic | 40.0% |
| AGAAATCCGGCCAACTAGTT+CGG | - | chr7.1:27011782-27011801 | None:intergenic | 45.0% | |
| AGTGGACAGCAATGCATTCT+TGG | - | chr7.1:27011604-27011623 | None:intergenic | 45.0% | |
| ATGGACTTATCAGAGCATGC+AGG | - | chr7.1:27011457-27011476 | None:intergenic | 45.0% | |
| ATTTGAACAAGGCTGAGGCA+AGG | + | chr7.1:27010979-27010998 | MS.gene023794:CDS | 45.0% | |
| CCTTTCCCAACAGAATTAGG+GGG | - | chr7.1:27011499-27011518 | None:intergenic | 45.0% | |
| CTGATAAGTCCATCACCACA+GGG | + | chr7.1:27011464-27011483 | MS.gene023794:CDS | 45.0% | |
| GATGCAGAATGAGCAATACC+AGG | + | chr7.1:27012132-27012151 | MS.gene023794:intron | 45.0% | |
| GATTTCTCTCTACTGTTGGC+TGG | + | chr7.1:27011795-27011814 | MS.gene023794:CDS | 45.0% | |
| GCCAACAGTAGAGAGAAATC+CGG | - | chr7.1:27011795-27011814 | None:intergenic | 45.0% | |
| TAAGCCACAAACCTCAACCA+AGG | - | chr7.1:27011839-27011858 | None:intergenic | 45.0% | |
| TAGCACGCTATTGACAACAC+TGG | - | chr7.1:27012413-27012432 | None:intergenic | 45.0% | |
| TCAACATTCTGCGCTTTACC+AGG | - | chr7.1:27011059-27011078 | None:intergenic | 45.0% | |
| TCTGATAAGTCCATCACCAC+AGG | + | chr7.1:27011463-27011482 | MS.gene023794:CDS | 45.0% | |
| TTGTCAATAGCGTGCTACAG+AGG | + | chr7.1:27012416-27012435 | MS.gene023794:intron | 45.0% | |
| TTTGAACAAGGCTGAGGCAA+GGG | + | chr7.1:27010980-27010999 | MS.gene023794:CDS | 45.0% | |
| ! | AAAGAGCGTACCGAACTAGT+TGG | + | chr7.1:27011769-27011788 | MS.gene023794:CDS | 45.0% |
| !! | CAAAGCAGGCATTGATACAG+TGG | + | chr7.1:27012195-27012214 | MS.gene023794:CDS | 45.0% |
| AAAGTCACTCCCCGTGTTAC+CGG | + | chr7.1:27012250-27012269 | MS.gene023794:CDS | 50.0% | |
| AACACGGGGAGTGACTTTCT+CGG | - | chr7.1:27012248-27012267 | None:intergenic | 50.0% | |
| ACCTCCTTGGTTGAGGTTTG+TGG | + | chr7.1:27011832-27011851 | MS.gene023794:intron | 50.0% | |
| AGCAGTTGGACTGCTTCAGT+TGG | + | chr7.1:27012219-27012238 | MS.gene023794:CDS | 50.0% | |
| ATCCAAATGCCCCGGTAACA+CGG | - | chr7.1:27012264-27012283 | None:intergenic | 50.0% | |
| CCCCCTAATTCTGTTGGGAA+AGG | + | chr7.1:27011496-27011515 | MS.gene023794:CDS | 50.0% | |
| GAGCACATTGGATGCAACCA+GGG | + | chr7.1:27010932-27010951 | MS.gene023794:CDS | 50.0% | |
| GCCGGATTTCTCTCTACTGT+TGG | + | chr7.1:27011791-27011810 | MS.gene023794:CDS | 50.0% | |
| TCCCAACAGAATTAGGGGGA+GGG | - | chr7.1:27011495-27011514 | None:intergenic | 50.0% | |
| TGAGCACATTGGATGCAACC+AGG | + | chr7.1:27010931-27010950 | MS.gene023794:CDS | 50.0% | |
| TTCCCAACAGAATTAGGGGG+AGG | - | chr7.1:27011496-27011515 | None:intergenic | 50.0% | |
| ! | AGCTCGGACAGCAGCTATTT+TGG | - | chr7.1:27012491-27012510 | None:intergenic | 50.0% |
| ! | GCTACAGAGGTGTAGCAGAT+GGG | + | chr7.1:27012429-27012448 | MS.gene023794:intron | 50.0% |
| ! | TGCTACAGAGGTGTAGCAGA+TGG | + | chr7.1:27012428-27012447 | MS.gene023794:intron | 50.0% |
| ! | TTTGATTAGCTCGGGGAGCT+TGG | + | chr7.1:27011958-27011977 | MS.gene023794:intron | 50.0% |
| ! | TTTGTGTGGCTTGGCAGAAC+CGG | + | chr7.1:27011642-27011661 | MS.gene023794:CDS | 50.0% |
| AAGAAGGCCAAGTTCTGCCC+TGG | - | chr7.1:27010952-27010971 | None:intergenic | 55.0% | |
| AAGTCACTCCCCGTGTTACC+GGG | + | chr7.1:27012251-27012270 | MS.gene023794:CDS | 55.0% | |
| ACACGGGGAGTGACTTTCTC+GGG | - | chr7.1:27012247-27012266 | None:intergenic | 55.0% | |
| ACCCCTCCCCCTAATTCTGT+TGG | + | chr7.1:27011490-27011509 | MS.gene023794:CDS | 55.0% | |
| AGCGTACCGAACTAGTTGGC+CGG | + | chr7.1:27011773-27011792 | MS.gene023794:CDS | 55.0% | |
| CCCAACAGAATTAGGGGGAG+GGG | - | chr7.1:27011494-27011513 | None:intergenic | 55.0% | |
| CCCCTCCCCCTAATTCTGTT+GGG | + | chr7.1:27011491-27011510 | MS.gene023794:CDS | 55.0% | |
| GATGCAACCAGGGCAGAACT+TGG | + | chr7.1:27010942-27010961 | MS.gene023794:CDS | 55.0% | |
| GCCACAAACCTCAACCAAGG+AGG | - | chr7.1:27011836-27011855 | None:intergenic | 55.0% | |
| GGGGAGCTTGGAAGACTTTC+TGG | + | chr7.1:27011970-27011989 | MS.gene023794:CDS | 55.0% | |
| TCCAAATGCCCCGGTAACAC+GGG | - | chr7.1:27012263-27012282 | None:intergenic | 55.0% | |
| AGTCACTCCCCGTGTTACCG+GGG | + | chr7.1:27012252-27012271 | MS.gene023794:CDS | 60.0% | |
| CCAAATGCCCCGGTAACACG+GGG | - | chr7.1:27012262-27012281 | None:intergenic | 60.0% | |
| ! | AGGGGTGTACCCTGTGGTGA+TGG | - | chr7.1:27011476-27011495 | None:intergenic | 60.0% |
| ! | CCCCGTGTTACCGGGGCATT+TGG | + | chr7.1:27012259-27012278 | MS.gene023794:CDS | 65.0% |
| ! | AGGGGGAGGGGTGTACCCTG+TGG | - | chr7.1:27011482-27011501 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 27010930 | 27012534 | 27010930 | ID=MS.gene023794 |
| chr7.1 | mRNA | 27010930 | 27012534 | 27010930 | ID=MS.gene023794.t1;Parent=MS.gene023794 |
| chr7.1 | exon | 27010930 | 27011121 | 27010930 | ID=MS.gene023794.t1.exon1;Parent=MS.gene023794.t1 |
| chr7.1 | CDS | 27010930 | 27011121 | 27010930 | ID=cds.MS.gene023794.t1;Parent=MS.gene023794.t1 |
| chr7.1 | exon | 27011443 | 27011517 | 27011443 | ID=MS.gene023794.t1.exon2;Parent=MS.gene023794.t1 |
| chr7.1 | CDS | 27011443 | 27011517 | 27011443 | ID=cds.MS.gene023794.t1;Parent=MS.gene023794.t1 |
| chr7.1 | exon | 27011600 | 27011674 | 27011600 | ID=MS.gene023794.t1.exon3;Parent=MS.gene023794.t1 |
| chr7.1 | CDS | 27011600 | 27011674 | 27011600 | ID=cds.MS.gene023794.t1;Parent=MS.gene023794.t1 |
| chr7.1 | exon | 27011766 | 27011846 | 27011766 | ID=MS.gene023794.t1.exon4;Parent=MS.gene023794.t1 |
| chr7.1 | CDS | 27011766 | 27011846 | 27011766 | ID=cds.MS.gene023794.t1;Parent=MS.gene023794.t1 |
| chr7.1 | exon | 27011967 | 27012041 | 27011967 | ID=MS.gene023794.t1.exon5;Parent=MS.gene023794.t1 |
| chr7.1 | CDS | 27011967 | 27012041 | 27011967 | ID=cds.MS.gene023794.t1;Parent=MS.gene023794.t1 |
| chr7.1 | exon | 27012139 | 27012312 | 27012139 | ID=MS.gene023794.t1.exon6;Parent=MS.gene023794.t1 |
| chr7.1 | CDS | 27012139 | 27012312 | 27012139 | ID=cds.MS.gene023794.t1;Parent=MS.gene023794.t1 |
| chr7.1 | exon | 27012436 | 27012534 | 27012436 | ID=MS.gene023794.t1.exon7;Parent=MS.gene023794.t1 |
| chr7.1 | CDS | 27012436 | 27012534 | 27012436 | ID=cds.MS.gene023794.t1;Parent=MS.gene023794.t1 |
| Gene Sequence |
| Protein sequence |
