Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52171.t1 | PNX71235.1 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 1.50E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52171.t1 | Q9LQ73 | 81.2 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 1.7e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52171.t1 | A0A2K3KY74 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 1.1e-121 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055134 | MS.gene52171 | -0.810446 | 1.15E-50 | -1.69E-46 |
| MS.gene055849 | MS.gene52171 | 0.8267 | 2.35E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42234 | MS.gene52171 | PPI |
| MS.gene27646 | MS.gene52171 | PPI |
| MS.gene023794 | MS.gene52171 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52171.t1 | MTR_7g076200 | 99.554 | 224 | 1 | 0 | 1 | 224 | 1 | 224 | 2.53e-165 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52171.t1 | AT1G01820 | 81.250 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 8.14e-139 | 390 |
| MS.gene52171.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.88e-135 | 379 |
| MS.gene52171.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.88e-135 | 379 |
| MS.gene52171.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.88e-135 | 379 |
| MS.gene52171.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.03e-129 | 367 |
| MS.gene52171.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.03e-129 | 367 |
| MS.gene52171.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.03e-129 | 367 |
Find 63 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGAGCTTGGAAGACTTTC+TGG | 0.141997 | 7.4:+29284735 | MS.gene52171:CDS |
| ATACCTTTCCCAACAGAATT+AGG | 0.150440 | 7.4:-29284266 | None:intergenic |
| TTCTCCATTACTCAAGAATT+TGG | 0.176496 | 7.4:-29283800 | None:intergenic |
| AGCTCGGACAGCAGCTATTT+TGG | 0.221592 | 7.4:-29285253 | None:intergenic |
| TACCTTTCCCAACAGAATTA+GGG | 0.287612 | 7.4:-29284265 | None:intergenic |
| CCCCGTGTTACCGGGGCATT+TGG | 0.290157 | 7.4:+29285024 | MS.gene52171:CDS |
| GATTTCTCTCTACTGTTGGC+TGG | 0.307117 | 7.4:+29284561 | MS.gene52171:CDS |
| ATCTCTAATATCTTGCTATC+AGG | 0.317696 | 7.4:+29285056 | MS.gene52171:CDS |
| AAAGTCACTCCCCGTGTTAC+CGG | 0.327800 | 7.4:+29285015 | MS.gene52171:CDS |
| AGTGGACAGCAATGCATTCT+TGG | 0.368945 | 7.4:-29284367 | None:intergenic |
| AGGGGTGTACCCTGTGGTGA+TGG | 0.409784 | 7.4:-29284240 | None:intergenic |
| GCCGGATTTCTCTCTACTGT+TGG | 0.411303 | 7.4:+29284557 | MS.gene52171:CDS |
| CTTGATCAATTTGTGTGGCT+TGG | 0.417533 | 7.4:+29284399 | MS.gene52171:CDS |
| ATATGCAGAGCGATACAATA+TGG | 0.438108 | 7.4:+29283775 | MS.gene52171:CDS |
| TTTGATTAGCTCGGGGAGCT+TGG | 0.445739 | 7.4:+29284723 | MS.gene52171:intron |
| AATATGTACCTCCTTGGTTG+AGG | 0.447824 | 7.4:+29284591 | MS.gene52171:CDS |
| TTCCTCAATATGTACCTCCT+TGG | 0.461177 | 7.4:+29284585 | MS.gene52171:CDS |
| TTTGTGTGGCTTGGCAGAAC+CGG | 0.466339 | 7.4:+29284408 | MS.gene52171:CDS |
| AGAAATCCGGCCAACTAGTT+CGG | 0.469145 | 7.4:-29284545 | None:intergenic |
| GGTTCCAAATTCTTGAGTAA+TGG | 0.475299 | 7.4:+29283796 | MS.gene52171:CDS |
| AACACGGGGAGTGACTTTCT+CGG | 0.476441 | 7.4:-29285010 | None:intergenic |
| TCAACATTCTGCGCTTTACC+AGG | 0.477818 | 7.4:-29283823 | None:intergenic |
| AAGTCACTCCCCGTGTTACC+GGG | 0.483116 | 7.4:+29285016 | MS.gene52171:CDS |
| ATTTCTCTCTACTGTTGGCT+GGG | 0.484195 | 7.4:+29284562 | MS.gene52171:CDS |
| ATCCAAATGCCCCGGTAACA+CGG | 0.484737 | 7.4:-29285026 | None:intergenic |
| TCCAAATGCCCCGGTAACAC+GGG | 0.487559 | 7.4:-29285025 | None:intergenic |
| ACACGGGGAGTGACTTTCTC+GGG | 0.492261 | 7.4:-29285009 | None:intergenic |
| GATGCAACCAGGGCAGAACT+TGG | 0.500278 | 7.4:+29283709 | MS.gene52171:CDS |
| TTGATCAAGAAACAAGAAAG+TGG | 0.509019 | 7.4:-29284385 | None:intergenic |
| TGCTACAGAGGTGTAGCAGA+TGG | 0.517681 | 7.4:+29285193 | MS.gene52171:intron |
| TTTATATTTGAACAAGGCTG+AGG | 0.519097 | 7.4:+29283741 | MS.gene52171:CDS |
| TTTGAACAAGGCTGAGGCAA+GGG | 0.529250 | 7.4:+29283747 | MS.gene52171:CDS |
| AACCAAGGAGGTACATATTG+AGG | 0.535412 | 7.4:-29284587 | None:intergenic |
| ACTCTTTCACTCATCAAAGC+AGG | 0.538753 | 7.4:+29284946 | MS.gene52171:CDS |
| TTCTTGAGTAATGGAGAACC+TGG | 0.539146 | 7.4:+29283805 | MS.gene52171:CDS |
| TGAGCACATTGGATGCAACC+AGG | 0.549904 | 7.4:+29283698 | MS.gene52171:CDS |
| AAGAAGGCCAAGTTCTGCCC+TGG | 0.549964 | 7.4:-29283716 | None:intergenic |
| TGTTTCTTGATCAATTTGTG+TGG | 0.551401 | 7.4:+29284394 | MS.gene52171:CDS |
| AGCAGTTGGACTGCTTCAGT+TGG | 0.552071 | 7.4:+29284984 | MS.gene52171:CDS |
| TTCTGATAGCTCTAGCAGCT+CGG | 0.554584 | 7.4:-29285269 | None:intergenic |
| GCTTGGCAGAACCGGTGTCA+TGG | 0.554788 | 7.4:+29284416 | MS.gene52171:CDS |
| TCTGATAAGTCCATCACCAC+AGG | 0.563882 | 7.4:+29284230 | MS.gene52171:CDS |
| AGCATTGAAAATGAGCACAT+TGG | 0.576046 | 7.4:+29283687 | None:intergenic |
| ATTTGAACAAGGCTGAGGCA+AGG | 0.577561 | 7.4:+29283746 | MS.gene52171:CDS |
| GCCAACAGTAGAGAGAAATC+CGG | 0.577756 | 7.4:-29284558 | None:intergenic |
| AGCGTACCGAACTAGTTGGC+CGG | 0.581306 | 7.4:+29284539 | MS.gene52171:CDS |
| GCTACAGAGGTGTAGCAGAT+GGG | 0.589217 | 7.4:+29285194 | MS.gene52171:intron |
| AAAGAGCGTACCGAACTAGT+TGG | 0.593530 | 7.4:+29284535 | MS.gene52171:CDS |
| TGTTCAAATATAAAACAAGA+AGG | 0.596092 | 7.4:-29283732 | None:intergenic |
| TGAAACAAATCCAAATGCCC+CGG | 0.597552 | 7.4:-29285034 | None:intergenic |
| ACCTTTCCCAACAGAATTAG+GGG | 0.608517 | 7.4:-29284264 | None:intergenic |
| ATTTCTTACGTCCATGACAC+CGG | 0.608857 | 7.4:-29284427 | None:intergenic |
| GAGCACATTGGATGCAACCA+GGG | 0.617935 | 7.4:+29283699 | MS.gene52171:CDS |
| ATTGATACAGTGGTAGCAGT+TGG | 0.619234 | 7.4:+29284970 | MS.gene52171:CDS |
| GATGCAGAATGAGCAATACC+AGG | 0.621633 | 7.4:+29284897 | MS.gene52171:intron |
| ATGGACTTATCAGAGCATGC+AGG | 0.623130 | 7.4:-29284221 | None:intergenic |
| AGTCACTCCCCGTGTTACCG+GGG | 0.628907 | 7.4:+29285017 | MS.gene52171:CDS |
| CAAAGCAGGCATTGATACAG+TGG | 0.634472 | 7.4:+29284960 | MS.gene52171:CDS |
| CCAAATGCCCCGGTAACACG+GGG | 0.648543 | 7.4:-29285024 | None:intergenic |
| CTGATAAGTCCATCACCACA+GGG | 0.670101 | 7.4:+29284231 | MS.gene52171:CDS |
| CCTTTCCCAACAGAATTAGG+GGG | 0.673035 | 7.4:-29284263 | None:intergenic |
| TAAGCCACAAACCTCAACCA+AGG | 0.690033 | 7.4:-29284602 | None:intergenic |
| GCCACAAACCTCAACCAAGG+AGG | 0.724104 | 7.4:-29284599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAAAGATTGAAA+AGG | - | chr7.4:29284315-29284334 | None:intergenic | 10.0% |
| !! | AAAAAAGTGAAGAAATAAAA+AGG | - | chr7.4:29284678-29284697 | None:intergenic | 15.0% |
| !! | AAAAAAATCAACAAGACATT+AGG | - | chr7.4:29284339-29284358 | None:intergenic | 20.0% |
| !! | TATGCTTAATATTCTTTGTT+CGG | + | chr7.4:29284023-29284042 | MS.gene52171:intron | 20.0% |
| !! | TGTTCAAATATAAAACAAGA+AGG | - | chr7.4:29283735-29283754 | None:intergenic | 20.0% |
| !! | TTTAAACAAATCAATCATAG+AGG | - | chr7.4:29283986-29284005 | None:intergenic | 20.0% |
| !!! | TATGCAGATACAAAATTTTA+GGG | - | chr7.4:29285134-29285153 | None:intergenic | 20.0% |
| !!! | TCTTGTTTTATATTTGAACA+AGG | + | chr7.4:29283735-29283754 | MS.gene52171:CDS | 20.0% |
| ! | ACACATAAAATGTCATACAT+AGG | - | chr7.4:29284704-29284723 | None:intergenic | 25.0% |
| ! | AGCTAAAAAAATCAAATGAG+AGG | + | chr7.4:29284923-29284942 | MS.gene52171:CDS | 25.0% |
| ! | ATAATACAGAAGCAAACAAA+AGG | - | chr7.4:29284470-29284489 | None:intergenic | 25.0% |
| ! | ATCCATAAGTAATAAAGGTA+AGG | - | chr7.4:29284880-29284899 | None:intergenic | 25.0% |
| ! | CACACAAAAAAAAGGATAAA+TGG | - | chr7.4:29283931-29283950 | None:intergenic | 25.0% |
| ! | TTCCTTACCTTTATTACTTA+TGG | + | chr7.4:29284875-29284894 | MS.gene52171:intron | 25.0% |
| !! | AAAAGTTTTTCGTCTATTCA+AGG | + | chr7.4:29283867-29283886 | MS.gene52171:CDS | 25.0% |
| !! | AAGAAATAAAAAGGCATGAT+TGG | - | chr7.4:29284669-29284688 | None:intergenic | 25.0% |
| !! | GTATGCAGATACAAAATTTT+AGG | - | chr7.4:29285135-29285154 | None:intergenic | 25.0% |
| !!! | AGTTTGCTTCTTATTTTTCT+TGG | + | chr7.4:29285105-29285124 | MS.gene52171:intron | 25.0% |
| !!! | CTCATTTGATTTTTTTAGCT+TGG | - | chr7.4:29284923-29284942 | None:intergenic | 25.0% |
| !!! | TTTTATGTGTTTGATTAGCT+CGG | + | chr7.4:29284714-29284733 | MS.gene52171:intron | 25.0% |
| AAAATGGGCACACAAAAAAA+AGG | - | chr7.4:29283939-29283958 | None:intergenic | 30.0% | |
| ATAAAATCCGTGTATAGTGT+TGG | - | chr7.4:29284499-29284518 | None:intergenic | 30.0% | |
| GAAGAATTTATACACATGCA+TGG | - | chr7.4:29284819-29284838 | None:intergenic | 30.0% | |
| TATAAAGCGTGTACCAAAAT+GGG | - | chr7.4:29283954-29283973 | None:intergenic | 30.0% | |
| TCTGCATCCATAAGTAATAA+AGG | - | chr7.4:29284885-29284904 | None:intergenic | 30.0% | |
| TGTTTCTTGATCAATTTGTG+TGG | + | chr7.4:29284394-29284413 | MS.gene52171:CDS | 30.0% | |
| TTATAAAGCGTGTACCAAAA+TGG | - | chr7.4:29283955-29283974 | None:intergenic | 30.0% | |
| TTATCATCCAACACTATACA+CGG | + | chr7.4:29284489-29284508 | MS.gene52171:intron | 30.0% | |
| TTCCACGTCAGAAAATATAT+TGG | - | chr7.4:29284137-29284156 | None:intergenic | 30.0% | |
| TTCTCCATTACTCAAGAATT+TGG | - | chr7.4:29283803-29283822 | None:intergenic | 30.0% | |
| TTGATCAAGAAACAAGAAAG+TGG | - | chr7.4:29284388-29284407 | None:intergenic | 30.0% | |
| TTTATATTTGAACAAGGCTG+AGG | + | chr7.4:29283741-29283760 | MS.gene52171:CDS | 30.0% | |
| ! | ATCTCTAATATCTTGCTATC+AGG | + | chr7.4:29285056-29285075 | MS.gene52171:CDS | 30.0% |
| ! | GGAAAGGTATGATATTTCTT+AGG | + | chr7.4:29284279-29284298 | MS.gene52171:intron | 30.0% |
| ! | TATATTTGTTAGCATCAACG+AGG | - | chr7.4:29284640-29284659 | None:intergenic | 30.0% |
| ! | TTCCAATATATTTTCTGACG+TGG | + | chr7.4:29284132-29284151 | MS.gene52171:intron | 30.0% |
| ! | TTCTGTCTTTGGTTTACTTT+GGG | + | chr7.4:29284844-29284863 | MS.gene52171:intron | 30.0% |
| ! | TTTATGTGTTTGATTAGCTC+GGG | + | chr7.4:29284715-29284734 | MS.gene52171:intron | 30.0% |
| ! | TTTCTGTCTTTGGTTTACTT+TGG | + | chr7.4:29284843-29284862 | MS.gene52171:intron | 30.0% |
| ! | TTTTTCGTCTATTCAAGGTT+AGG | + | chr7.4:29283872-29283891 | MS.gene52171:intron | 30.0% |
| !!! | TTTTTTTTGTGTGCCCATTT+TGG | + | chr7.4:29283938-29283957 | MS.gene52171:intron | 30.0% |
| ATACCTTTCCCAACAGAATT+AGG | - | chr7.4:29284269-29284288 | None:intergenic | 35.0% | |
| ATATGCAGAGCGATACAATA+TGG | + | chr7.4:29283775-29283794 | MS.gene52171:CDS | 35.0% | |
| CTAAGGGACACAAGTATAAA+AGG | + | chr7.4:29284055-29284074 | MS.gene52171:intron | 35.0% | |
| GGTTCCAAATTCTTGAGTAA+TGG | + | chr7.4:29283796-29283815 | MS.gene52171:CDS | 35.0% | |
| TACCTTTCCCAACAGAATTA+GGG | - | chr7.4:29284268-29284287 | None:intergenic | 35.0% | |
| TTCTTCGAAGTTTCTGTCTT+TGG | + | chr7.4:29284833-29284852 | MS.gene52171:intron | 35.0% | |
| ! | AAAAACTTTTCGTGCTAAGC+TGG | - | chr7.4:29283857-29283876 | None:intergenic | 35.0% |
| ! | TTATGTGTTTGATTAGCTCG+GGG | + | chr7.4:29284716-29284735 | MS.gene52171:intron | 35.0% |
| !!! | TTGATTTTTTTAGCTTGGCC+TGG | - | chr7.4:29284918-29284937 | None:intergenic | 35.0% |
| AAGCAAACAAAAGGAGCTGA+TGG | - | chr7.4:29284461-29284480 | None:intergenic | 40.0% | |
| AATATGTACCTCCTTGGTTG+AGG | + | chr7.4:29284591-29284610 | MS.gene52171:CDS | 40.0% | |
| ACCTTTCCCAACAGAATTAG+GGG | - | chr7.4:29284267-29284286 | None:intergenic | 40.0% | |
| ACTCTTTCACTCATCAAAGC+AGG | + | chr7.4:29284946-29284965 | MS.gene52171:CDS | 40.0% | |
| ATTGATACAGTGGTAGCAGT+TGG | + | chr7.4:29284970-29284989 | MS.gene52171:CDS | 40.0% | |
| ATTTCTTACGTCCATGACAC+CGG | - | chr7.4:29284430-29284449 | None:intergenic | 40.0% | |
| CTTGATCAATTTGTGTGGCT+TGG | + | chr7.4:29284399-29284418 | MS.gene52171:CDS | 40.0% | |
| TGAAACAAATCCAAATGCCC+CGG | - | chr7.4:29285037-29285056 | None:intergenic | 40.0% | |
| TGTTCGGATCTGACTTCTAA+GGG | + | chr7.4:29284039-29284058 | MS.gene52171:intron | 40.0% | |
| TTCCTCAATATGTACCTCCT+TGG | + | chr7.4:29284585-29284604 | MS.gene52171:CDS | 40.0% | |
| TTGTTCGGATCTGACTTCTA+AGG | + | chr7.4:29284038-29284057 | MS.gene52171:intron | 40.0% | |
| ! | AACCAAGGAGGTACATATTG+AGG | - | chr7.4:29284590-29284609 | None:intergenic | 40.0% |
| ! | ATTTCTCTCTACTGTTGGCT+GGG | + | chr7.4:29284562-29284581 | MS.gene52171:CDS | 40.0% |
| ! | TTCTTGAGTAATGGAGAACC+TGG | + | chr7.4:29283805-29283824 | MS.gene52171:CDS | 40.0% |
| AGAAATCCGGCCAACTAGTT+CGG | - | chr7.4:29284548-29284567 | None:intergenic | 45.0% | |
| AGTGGACAGCAATGCATTCT+TGG | - | chr7.4:29284370-29284389 | None:intergenic | 45.0% | |
| ATGGACTTATCAGAGCATGC+AGG | - | chr7.4:29284224-29284243 | None:intergenic | 45.0% | |
| ATTTGAACAAGGCTGAGGCA+AGG | + | chr7.4:29283746-29283765 | MS.gene52171:CDS | 45.0% | |
| CCTTTCCCAACAGAATTAGG+GGG | - | chr7.4:29284266-29284285 | None:intergenic | 45.0% | |
| CTGATAAGTCCATCACCACA+GGG | + | chr7.4:29284231-29284250 | MS.gene52171:CDS | 45.0% | |
| GATGCAGAATGAGCAATACC+AGG | + | chr7.4:29284897-29284916 | MS.gene52171:intron | 45.0% | |
| GATTTCTCTCTACTGTTGGC+TGG | + | chr7.4:29284561-29284580 | MS.gene52171:CDS | 45.0% | |
| GCCAACAGTAGAGAGAAATC+CGG | - | chr7.4:29284561-29284580 | None:intergenic | 45.0% | |
| TAAGCCACAAACCTCAACCA+AGG | - | chr7.4:29284605-29284624 | None:intergenic | 45.0% | |
| TAGCACGCTATTGACAACAC+TGG | - | chr7.4:29285178-29285197 | None:intergenic | 45.0% | |
| TCAACATTCTGCGCTTTACC+AGG | - | chr7.4:29283826-29283845 | None:intergenic | 45.0% | |
| TCTGATAAGTCCATCACCAC+AGG | + | chr7.4:29284230-29284249 | MS.gene52171:CDS | 45.0% | |
| TTGTCAATAGCGTGCTACAG+AGG | + | chr7.4:29285181-29285200 | MS.gene52171:intron | 45.0% | |
| TTTGAACAAGGCTGAGGCAA+GGG | + | chr7.4:29283747-29283766 | MS.gene52171:CDS | 45.0% | |
| ! | AAAGAGCGTACCGAACTAGT+TGG | + | chr7.4:29284535-29284554 | MS.gene52171:CDS | 45.0% |
| !! | CAAAGCAGGCATTGATACAG+TGG | + | chr7.4:29284960-29284979 | MS.gene52171:CDS | 45.0% |
| !! | TTCTGATAGCTCTAGCAGCT+CGG | - | chr7.4:29285272-29285291 | None:intergenic | 45.0% |
| AAAGTCACTCCCCGTGTTAC+CGG | + | chr7.4:29285015-29285034 | MS.gene52171:CDS | 50.0% | |
| AACACGGGGAGTGACTTTCT+CGG | - | chr7.4:29285013-29285032 | None:intergenic | 50.0% | |
| ACCTCCTTGGTTGAGGTTTG+TGG | + | chr7.4:29284598-29284617 | MS.gene52171:intron | 50.0% | |
| AGCAGTTGGACTGCTTCAGT+TGG | + | chr7.4:29284984-29285003 | MS.gene52171:CDS | 50.0% | |
| ATCCAAATGCCCCGGTAACA+CGG | - | chr7.4:29285029-29285048 | None:intergenic | 50.0% | |
| CCCCCTAATTCTGTTGGGAA+AGG | + | chr7.4:29284263-29284282 | MS.gene52171:CDS | 50.0% | |
| GAGCACATTGGATGCAACCA+GGG | + | chr7.4:29283699-29283718 | MS.gene52171:CDS | 50.0% | |
| GCCGGATTTCTCTCTACTGT+TGG | + | chr7.4:29284557-29284576 | MS.gene52171:CDS | 50.0% | |
| TCCCAACAGAATTAGGGGGA+GGG | - | chr7.4:29284262-29284281 | None:intergenic | 50.0% | |
| TGAGCACATTGGATGCAACC+AGG | + | chr7.4:29283698-29283717 | MS.gene52171:CDS | 50.0% | |
| TTCCCAACAGAATTAGGGGG+AGG | - | chr7.4:29284263-29284282 | None:intergenic | 50.0% | |
| ! | AGCTCGGACAGCAGCTATTT+TGG | - | chr7.4:29285256-29285275 | None:intergenic | 50.0% |
| ! | GCTACAGAGGTGTAGCAGAT+GGG | + | chr7.4:29285194-29285213 | MS.gene52171:intron | 50.0% |
| ! | TGCTACAGAGGTGTAGCAGA+TGG | + | chr7.4:29285193-29285212 | MS.gene52171:intron | 50.0% |
| ! | TTTGATTAGCTCGGGGAGCT+TGG | + | chr7.4:29284723-29284742 | MS.gene52171:intron | 50.0% |
| ! | TTTGTGTGGCTTGGCAGAAC+CGG | + | chr7.4:29284408-29284427 | MS.gene52171:CDS | 50.0% |
| AAGAAGGCCAAGTTCTGCCC+TGG | - | chr7.4:29283719-29283738 | None:intergenic | 55.0% | |
| AAGTCACTCCCCGTGTTACC+GGG | + | chr7.4:29285016-29285035 | MS.gene52171:CDS | 55.0% | |
| ACACGGGGAGTGACTTTCTC+GGG | - | chr7.4:29285012-29285031 | None:intergenic | 55.0% | |
| ACCCCTCCCCCTAATTCTGT+TGG | + | chr7.4:29284257-29284276 | MS.gene52171:CDS | 55.0% | |
| AGCGTACCGAACTAGTTGGC+CGG | + | chr7.4:29284539-29284558 | MS.gene52171:CDS | 55.0% | |
| CCCAACAGAATTAGGGGGAG+GGG | - | chr7.4:29284261-29284280 | None:intergenic | 55.0% | |
| CCCCTCCCCCTAATTCTGTT+GGG | + | chr7.4:29284258-29284277 | MS.gene52171:CDS | 55.0% | |
| GATGCAACCAGGGCAGAACT+TGG | + | chr7.4:29283709-29283728 | MS.gene52171:CDS | 55.0% | |
| GCCACAAACCTCAACCAAGG+AGG | - | chr7.4:29284602-29284621 | None:intergenic | 55.0% | |
| GGGGAGCTTGGAAGACTTTC+TGG | + | chr7.4:29284735-29284754 | MS.gene52171:CDS | 55.0% | |
| TCCAAATGCCCCGGTAACAC+GGG | - | chr7.4:29285028-29285047 | None:intergenic | 55.0% | |
| AGTCACTCCCCGTGTTACCG+GGG | + | chr7.4:29285017-29285036 | MS.gene52171:CDS | 60.0% | |
| CCAAATGCCCCGGTAACACG+GGG | - | chr7.4:29285027-29285046 | None:intergenic | 60.0% | |
| ! | AGGGGTGTACCCTGTGGTGA+TGG | - | chr7.4:29284243-29284262 | None:intergenic | 60.0% |
| ! | GCTTGGCAGAACCGGTGTCA+TGG | + | chr7.4:29284416-29284435 | MS.gene52171:CDS | 60.0% |
| ! | CCCCGTGTTACCGGGGCATT+TGG | + | chr7.4:29285024-29285043 | MS.gene52171:CDS | 65.0% |
| ! | AGGGGGAGGGGTGTACCCTG+TGG | - | chr7.4:29284249-29284268 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 29283697 | 29285299 | 29283697 | ID=MS.gene52171 |
| chr7.4 | mRNA | 29283697 | 29285299 | 29283697 | ID=MS.gene52171.t1;Parent=MS.gene52171 |
| chr7.4 | exon | 29283697 | 29283888 | 29283697 | ID=MS.gene52171.t1.exon1;Parent=MS.gene52171.t1 |
| chr7.4 | CDS | 29283697 | 29283888 | 29283697 | ID=cds.MS.gene52171.t1;Parent=MS.gene52171.t1 |
| chr7.4 | exon | 29284210 | 29284284 | 29284210 | ID=MS.gene52171.t1.exon2;Parent=MS.gene52171.t1 |
| chr7.4 | CDS | 29284210 | 29284284 | 29284210 | ID=cds.MS.gene52171.t1;Parent=MS.gene52171.t1 |
| chr7.4 | exon | 29284366 | 29284440 | 29284366 | ID=MS.gene52171.t1.exon3;Parent=MS.gene52171.t1 |
| chr7.4 | CDS | 29284366 | 29284440 | 29284366 | ID=cds.MS.gene52171.t1;Parent=MS.gene52171.t1 |
| chr7.4 | exon | 29284532 | 29284612 | 29284532 | ID=MS.gene52171.t1.exon4;Parent=MS.gene52171.t1 |
| chr7.4 | CDS | 29284532 | 29284612 | 29284532 | ID=cds.MS.gene52171.t1;Parent=MS.gene52171.t1 |
| chr7.4 | exon | 29284732 | 29284806 | 29284732 | ID=MS.gene52171.t1.exon5;Parent=MS.gene52171.t1 |
| chr7.4 | CDS | 29284732 | 29284806 | 29284732 | ID=cds.MS.gene52171.t1;Parent=MS.gene52171.t1 |
| chr7.4 | exon | 29284904 | 29285077 | 29284904 | ID=MS.gene52171.t1.exon6;Parent=MS.gene52171.t1 |
| chr7.4 | CDS | 29284904 | 29285077 | 29284904 | ID=cds.MS.gene52171.t1;Parent=MS.gene52171.t1 |
| chr7.4 | exon | 29285201 | 29285299 | 29285201 | ID=MS.gene52171.t1.exon7;Parent=MS.gene52171.t1 |
| chr7.4 | CDS | 29285201 | 29285299 | 29285201 | ID=cds.MS.gene52171.t1;Parent=MS.gene52171.t1 |
| Gene Sequence |
| Protein sequence |
