Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27646.t1 | PNX71235.1 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 6.70E-122 | 446.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27646.t1 | Q9LQ73 | 81.2 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 1.7e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27646.t1 | A0A2K3KY74 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 4.8e-122 | 446.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene27646 | -0.811393 | 7.16E-51 | -1.69E-46 |
| MS.gene04918 | MS.gene27646 | -0.81866 | 1.75E-52 | -1.69E-46 |
| MS.gene049227 | MS.gene27646 | -0.806814 | 6.85E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene27646 | -0.860065 | 2.68E-63 | -1.69E-46 |
| MS.gene049368 | MS.gene27646 | -0.800536 | 1.38E-48 | -1.69E-46 |
| MS.gene049411 | MS.gene27646 | -0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene27646 | -0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene27646 | -0.877536 | 5.81E-69 | -1.69E-46 |
| MS.gene049807 | MS.gene27646 | -0.833608 | 4.84E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene27646 | -0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene050258 | MS.gene27646 | -0.81705 | 4.03E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene27646 | -0.801191 | 1.01E-48 | -1.69E-46 |
| MS.gene050901 | MS.gene27646 | -0.823816 | 1.13E-53 | -1.69E-46 |
| MS.gene050945 | MS.gene27646 | -0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene051018 | MS.gene27646 | -0.816201 | 6.25E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene27646 | -0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene27646 | -0.869534 | 2.88E-66 | -1.69E-46 |
| MS.gene051279 | MS.gene27646 | -0.817093 | 3.94E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene27646 | -0.802284 | 6.03E-49 | -1.69E-46 |
| MS.gene051450 | MS.gene27646 | -0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene051538 | MS.gene27646 | -0.808416 | 3.13E-50 | -1.69E-46 |
| MS.gene051648 | MS.gene27646 | -0.836636 | 8.33E-57 | -1.69E-46 |
| MS.gene051664 | MS.gene27646 | -0.812897 | 3.36E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene27646 | -0.807156 | 5.80E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene27646 | -0.833036 | 6.72E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene27646 | -0.816187 | 6.29E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene27646 | -0.815241 | 1.02E-51 | -1.69E-46 |
| MS.gene052150 | MS.gene27646 | -0.802591 | 5.22E-49 | -1.69E-46 |
| MS.gene052155 | MS.gene27646 | 0.825313 | 5.02E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene27646 | -0.805898 | 1.07E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene27646 | -0.809333 | 1.99E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene27646 | -0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene27646 | -0.830792 | 2.41E-55 | -1.69E-46 |
| MS.gene052628 | MS.gene27646 | -0.809376 | 1.95E-50 | -1.69E-46 |
| MS.gene052717 | MS.gene27646 | -0.8033 | 3.72E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene27646 | -0.87654 | 1.29E-68 | -1.69E-46 |
| MS.gene053143 | MS.gene27646 | -0.839446 | 1.58E-57 | -1.69E-46 |
| MS.gene053144 | MS.gene27646 | -0.837996 | 3.74E-57 | -1.69E-46 |
| MS.gene053171 | MS.gene27646 | -0.827373 | 1.62E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene27646 | -0.845771 | 3.30E-59 | -1.69E-46 |
| MS.gene053272 | MS.gene27646 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene053536 | MS.gene27646 | -0.843038 | 1.79E-58 | -1.69E-46 |
| MS.gene053538 | MS.gene27646 | -0.836693 | 8.06E-57 | -1.69E-46 |
| MS.gene053581 | MS.gene27646 | -0.839997 | 1.13E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene27646 | -0.82621 | 3.07E-54 | -1.69E-46 |
| MS.gene054142 | MS.gene27646 | -0.855125 | 7.78E-62 | -1.69E-46 |
| MS.gene054178 | MS.gene27646 | -0.825038 | 5.83E-54 | -1.69E-46 |
| MS.gene054554 | MS.gene27646 | -0.801282 | 9.69E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene27646 | -0.83914 | 1.89E-57 | -1.69E-46 |
| MS.gene05458 | MS.gene27646 | -0.824483 | 7.88E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene27646 | -0.810471 | 1.13E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene27646 | -0.803665 | 3.13E-49 | -1.69E-46 |
| MS.gene055083 | MS.gene27646 | -0.816116 | 6.53E-52 | -1.69E-46 |
| MS.gene055220 | MS.gene27646 | -0.845149 | 4.86E-59 | -1.69E-46 |
| MS.gene055221 | MS.gene27646 | -0.852321 | 4.98E-61 | -1.69E-46 |
| MS.gene055465 | MS.gene27646 | -0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene27646 | -0.804939 | 1.70E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene27646 | -0.810755 | 9.85E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene27646 | -0.856545 | 2.99E-62 | -1.69E-46 |
| MS.gene055537 | MS.gene27646 | -0.848546 | 5.72E-60 | -1.69E-46 |
| MS.gene055580 | MS.gene27646 | 0.847939 | 8.42E-60 | -1.69E-46 |
| MS.gene055765 | MS.gene27646 | -0.812947 | 3.28E-51 | -1.69E-46 |
| MS.gene056005 | MS.gene27646 | -0.806396 | 8.40E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene27646 | 0.833565 | 4.96E-56 | -1.69E-46 |
| MS.gene056082 | MS.gene27646 | -0.823114 | 1.65E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene27646 | -0.83668 | 8.12E-57 | -1.69E-46 |
| MS.gene05686 | MS.gene27646 | -0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene057082 | MS.gene27646 | -0.849998 | 2.26E-60 | -1.69E-46 |
| MS.gene057102 | MS.gene27646 | -0.87334 | 1.59E-67 | -1.69E-46 |
| MS.gene057132 | MS.gene27646 | -0.800443 | 1.44E-48 | -1.69E-46 |
| MS.gene057294 | MS.gene27646 | -0.819265 | 1.27E-52 | -1.69E-46 |
| MS.gene057684 | MS.gene27646 | 0.833065 | 6.60E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene27646 | -0.811309 | 7.47E-51 | -1.69E-46 |
| MS.gene058149 | MS.gene27646 | -0.834513 | 2.87E-56 | -1.69E-46 |
| MS.gene058210 | MS.gene27646 | -0.805539 | 1.27E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene27646 | -0.83532 | 1.80E-56 | -1.69E-46 |
| MS.gene058649 | MS.gene27646 | -0.803711 | 3.06E-49 | -1.69E-46 |
| MS.gene058668 | MS.gene27646 | -0.837574 | 4.80E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene27646 | -0.848518 | 5.83E-60 | -1.69E-46 |
| MS.gene059146 | MS.gene27646 | -0.808034 | 3.78E-50 | -1.69E-46 |
| MS.gene059227 | MS.gene27646 | -0.820802 | 5.66E-53 | -1.69E-46 |
| MS.gene059424 | MS.gene27646 | -0.826406 | 2.76E-54 | -1.69E-46 |
| MS.gene059778 | MS.gene27646 | -0.883752 | 3.44E-71 | -1.69E-46 |
| MS.gene05985 | MS.gene27646 | 0.859971 | 2.86E-63 | -1.69E-46 |
| MS.gene059900 | MS.gene27646 | 0.820311 | 7.34E-53 | -1.69E-46 |
| MS.gene059901 | MS.gene27646 | 0.838237 | 3.24E-57 | -1.69E-46 |
| MS.gene060519 | MS.gene27646 | -0.827466 | 1.54E-54 | -1.69E-46 |
| MS.gene060525 | MS.gene27646 | -0.805421 | 1.35E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene27646 | -0.864135 | 1.51E-64 | -1.69E-46 |
| MS.gene061188 | MS.gene27646 | -0.835377 | 1.74E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27646 | MS.gene42234 | PPI |
| MS.gene27646 | MS.gene52171 | PPI |
| MS.gene27646 | MS.gene023794 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27646.t1 | MTR_7g076200 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 1.01e-165 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27646.t1 | AT1G01820 | 81.250 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 1.16e-138 | 389 |
| MS.gene27646.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.99e-135 | 379 |
| MS.gene27646.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.99e-135 | 379 |
| MS.gene27646.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 9.99e-135 | 379 |
| MS.gene27646.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.34e-129 | 366 |
| MS.gene27646.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.34e-129 | 366 |
| MS.gene27646.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 1.34e-129 | 366 |
Find 62 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGAGCTTGGAAGACTTTC+TGG | 0.141997 | 7.2:+29601543 | MS.gene27646:CDS |
| ATACCTTTCCCAACAGAATT+AGG | 0.150440 | 7.2:-29601072 | None:intergenic |
| TTCTCCATTACTCAAGAATT+TGG | 0.176496 | 7.2:-29600606 | None:intergenic |
| AGCTCGGACAGCAGCTATTT+TGG | 0.221592 | 7.2:-29602061 | None:intergenic |
| TACCTTTCCCAACAGAATTA+GGG | 0.287612 | 7.2:-29601071 | None:intergenic |
| CCCCGTGTTACCGGGGCATT+TGG | 0.290157 | 7.2:+29601832 | MS.gene27646:CDS |
| GATTTCTCTCTACTGTTGGC+TGG | 0.307117 | 7.2:+29601369 | MS.gene27646:CDS |
| ATCTCTAATATCTTGCTATC+AGG | 0.317696 | 7.2:+29601864 | MS.gene27646:CDS |
| AAAGTCACTCCCCGTGTTAC+CGG | 0.327800 | 7.2:+29601823 | MS.gene27646:CDS |
| AGTGGACAGCAATGCATTCT+TGG | 0.368945 | 7.2:-29601175 | None:intergenic |
| AGGGGTGTACCCTGTGGTGA+TGG | 0.409784 | 7.2:-29601046 | None:intergenic |
| GCCGGATTTCTCTCTACTGT+TGG | 0.411303 | 7.2:+29601365 | MS.gene27646:CDS |
| CTTGATCAATTTGTGTGGCT+TGG | 0.417533 | 7.2:+29601207 | MS.gene27646:CDS |
| ATATGCAGAGCGATACAATA+TGG | 0.438108 | 7.2:+29600581 | MS.gene27646:CDS |
| TTTGATTAGCTCGGGGAGCT+TGG | 0.445739 | 7.2:+29601531 | MS.gene27646:intron |
| AATATGTACCTCCTTGGTTG+AGG | 0.447824 | 7.2:+29601399 | MS.gene27646:CDS |
| TTCTGATAGCTTTAGCAGCT+CGG | 0.456319 | 7.2:-29602077 | None:intergenic |
| TTCCTCAATATGTACCTCCT+TGG | 0.461177 | 7.2:+29601393 | MS.gene27646:CDS |
| TTTGTGTGGCTTGGCAGAAC+CGG | 0.466339 | 7.2:+29601216 | MS.gene27646:CDS |
| AGAAATCCGGCCAACTAGTT+CGG | 0.469145 | 7.2:-29601353 | None:intergenic |
| GGTTCCAAATTCTTGAGTAA+TGG | 0.475299 | 7.2:+29600602 | MS.gene27646:CDS |
| AACACGGGGAGTGACTTTCT+CGG | 0.476441 | 7.2:-29601818 | None:intergenic |
| TCAACATTCTGCGCTTTACC+AGG | 0.477818 | 7.2:-29600629 | None:intergenic |
| AAGTCACTCCCCGTGTTACC+GGG | 0.483116 | 7.2:+29601824 | MS.gene27646:CDS |
| ATTTCTCTCTACTGTTGGCT+GGG | 0.484195 | 7.2:+29601370 | MS.gene27646:CDS |
| ATCCAAATGCCCCGGTAACA+CGG | 0.484737 | 7.2:-29601834 | None:intergenic |
| TCCAAATGCCCCGGTAACAC+GGG | 0.487559 | 7.2:-29601833 | None:intergenic |
| ACACGGGGAGTGACTTTCTC+GGG | 0.492261 | 7.2:-29601817 | None:intergenic |
| GATGCAACCAGGGCAGAACT+TGG | 0.500278 | 7.2:+29600515 | MS.gene27646:CDS |
| TTGATCAAGAAACAAGAAAG+TGG | 0.509019 | 7.2:-29601193 | None:intergenic |
| TGCTACAGAGGTGTAGCAGA+TGG | 0.517681 | 7.2:+29602001 | MS.gene27646:intron |
| TTTATATTTGAACAAGGCTG+AGG | 0.519097 | 7.2:+29600547 | MS.gene27646:CDS |
| TTTGAACAAGGCTGAGGCAA+GGG | 0.529250 | 7.2:+29600553 | MS.gene27646:CDS |
| AACCAAGGAGGTACATATTG+AGG | 0.535412 | 7.2:-29601395 | None:intergenic |
| ACTCTTTCACTCATCAAAGC+AGG | 0.538753 | 7.2:+29601754 | MS.gene27646:CDS |
| TTCTTGAGTAATGGAGAACC+TGG | 0.539146 | 7.2:+29600611 | MS.gene27646:CDS |
| TGAGCACATTGGATGCAACC+AGG | 0.549904 | 7.2:+29600504 | MS.gene27646:CDS |
| AAGAAGGCCAAGTTCTGCCC+TGG | 0.549964 | 7.2:-29600522 | None:intergenic |
| TGTTTCTTGATCAATTTGTG+TGG | 0.551401 | 7.2:+29601202 | MS.gene27646:CDS |
| AGCAGTTGGACTGCTTCAGT+TGG | 0.552071 | 7.2:+29601792 | MS.gene27646:CDS |
| TCTGATAAGTCCATCACCAC+AGG | 0.563882 | 7.2:+29601036 | MS.gene27646:CDS |
| ATTTGAACAAGGCTGAGGCA+AGG | 0.577561 | 7.2:+29600552 | MS.gene27646:CDS |
| GCCAACAGTAGAGAGAAATC+CGG | 0.577756 | 7.2:-29601366 | None:intergenic |
| ATTTCTTACGTCGATGACAC+CGG | 0.577930 | 7.2:-29601235 | None:intergenic |
| AGCGTACCGAACTAGTTGGC+CGG | 0.581306 | 7.2:+29601347 | MS.gene27646:CDS |
| GCTACAGAGGTGTAGCAGAT+GGG | 0.589217 | 7.2:+29602002 | MS.gene27646:intron |
| AAAGAGCGTACCGAACTAGT+TGG | 0.593530 | 7.2:+29601343 | MS.gene27646:CDS |
| AGCATTGGAAATGAGCACAT+TGG | 0.594687 | 7.2:+29600493 | None:intergenic |
| TGTTCAAATATAAAACAAGA+AGG | 0.596092 | 7.2:-29600538 | None:intergenic |
| TGAAACAAATCCAAATGCCC+CGG | 0.597552 | 7.2:-29601842 | None:intergenic |
| ACCTTTCCCAACAGAATTAG+GGG | 0.608517 | 7.2:-29601070 | None:intergenic |
| GAGCACATTGGATGCAACCA+GGG | 0.617935 | 7.2:+29600505 | MS.gene27646:CDS |
| ATTGATACAGTGGTAGCAGT+TGG | 0.619234 | 7.2:+29601778 | MS.gene27646:CDS |
| GATGCAGAATGAGCAATACC+AGG | 0.621633 | 7.2:+29601705 | MS.gene27646:intron |
| ATGGACTTATCAGAGCATGC+AGG | 0.623130 | 7.2:-29601027 | None:intergenic |
| AGTCACTCCCCGTGTTACCG+GGG | 0.628907 | 7.2:+29601825 | MS.gene27646:CDS |
| CAAAGCAGGCATTGATACAG+TGG | 0.634472 | 7.2:+29601768 | MS.gene27646:CDS |
| CCAAATGCCCCGGTAACACG+GGG | 0.648543 | 7.2:-29601832 | None:intergenic |
| CTGATAAGTCCATCACCACA+GGG | 0.670101 | 7.2:+29601037 | MS.gene27646:CDS |
| CCTTTCCCAACAGAATTAGG+GGG | 0.673035 | 7.2:-29601069 | None:intergenic |
| TAAGCCACAAACCTCAACCA+AGG | 0.690033 | 7.2:-29601410 | None:intergenic |
| GCCACAAACCTCAACCAAGG+AGG | 0.724104 | 7.2:-29601407 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAAAGATTGAAA+AGG | - | chr7.2:29601121-29601140 | None:intergenic | 10.0% |
| !! | AAAAAAGTGAAGAAATAAAA+AGG | - | chr7.2:29601486-29601505 | None:intergenic | 15.0% |
| !! | TTATTACATGAACTAATTAA+TGG | - | chr7.2:29600975-29600994 | None:intergenic | 15.0% |
| !! | AAAAAAATCAACAAGACATT+AGG | - | chr7.2:29601145-29601164 | None:intergenic | 20.0% |
| !! | TATGCTTAATATTCTTTGTT+CGG | + | chr7.2:29600829-29600848 | MS.gene27646:intron | 20.0% |
| !! | TGTTCAAATATAAAACAAGA+AGG | - | chr7.2:29600541-29600560 | None:intergenic | 20.0% |
| !! | TTTAAACAAATCAATCATAG+AGG | - | chr7.2:29600792-29600811 | None:intergenic | 20.0% |
| !!! | TATGCAGATACAAAATTTTA+GGG | - | chr7.2:29601942-29601961 | None:intergenic | 20.0% |
| !!! | TCTTGTTTTATATTTGAACA+AGG | + | chr7.2:29600541-29600560 | MS.gene27646:CDS | 20.0% |
| ! | ACACATAAAATGTCATACAT+AGG | - | chr7.2:29601512-29601531 | None:intergenic | 25.0% |
| ! | AGCTAAAAAAATCAAATGAG+AGG | + | chr7.2:29601731-29601750 | MS.gene27646:CDS | 25.0% |
| ! | ATAATACAGAAGCAAACAAA+AGG | - | chr7.2:29601278-29601297 | None:intergenic | 25.0% |
| ! | ATCCATAAGTAATAAAGGTA+AGG | - | chr7.2:29601688-29601707 | None:intergenic | 25.0% |
| ! | CACACAAAAAAAAGGATAAA+TGG | - | chr7.2:29600737-29600756 | None:intergenic | 25.0% |
| ! | TTCCATGTCAGAAAATATAT+TGG | - | chr7.2:29600943-29600962 | None:intergenic | 25.0% |
| ! | TTCCTTACCTTTATTACTTA+TGG | + | chr7.2:29601683-29601702 | MS.gene27646:intron | 25.0% |
| !! | AAAAGTTTTTCGTCTATTCA+AGG | + | chr7.2:29600673-29600692 | MS.gene27646:CDS | 25.0% |
| !! | AAGAAATAAAAAGGCATGAT+TGG | - | chr7.2:29601477-29601496 | None:intergenic | 25.0% |
| !! | GTATGCAGATACAAAATTTT+AGG | - | chr7.2:29601943-29601962 | None:intergenic | 25.0% |
| !! | TTCCAATATATTTTCTGACA+TGG | + | chr7.2:29600938-29600957 | MS.gene27646:intron | 25.0% |
| !!! | AGTTTGCTTCTTATTTTTCT+TGG | + | chr7.2:29601913-29601932 | MS.gene27646:intron | 25.0% |
| !!! | CTCATTTGATTTTTTTAGCT+TGG | - | chr7.2:29601731-29601750 | None:intergenic | 25.0% |
| !!! | TTTTATGTGTTTGATTAGCT+CGG | + | chr7.2:29601522-29601541 | MS.gene27646:intron | 25.0% |
| AAAATGGGCACACAAAAAAA+AGG | - | chr7.2:29600745-29600764 | None:intergenic | 30.0% | |
| ATAAAATCCGTGTATAGTGT+TGG | - | chr7.2:29601307-29601326 | None:intergenic | 30.0% | |
| GAAGAATTTATACACATGCA+TGG | - | chr7.2:29601627-29601646 | None:intergenic | 30.0% | |
| TATAAAGCGTGTACCAAAAT+GGG | - | chr7.2:29600760-29600779 | None:intergenic | 30.0% | |
| TCTGCATCCATAAGTAATAA+AGG | - | chr7.2:29601693-29601712 | None:intergenic | 30.0% | |
| TGTTTCTTGATCAATTTGTG+TGG | + | chr7.2:29601202-29601221 | MS.gene27646:CDS | 30.0% | |
| TTATAAAGCGTGTACCAAAA+TGG | - | chr7.2:29600761-29600780 | None:intergenic | 30.0% | |
| TTATCATCCAACACTATACA+CGG | + | chr7.2:29601297-29601316 | MS.gene27646:intron | 30.0% | |
| TTCTCCATTACTCAAGAATT+TGG | - | chr7.2:29600609-29600628 | None:intergenic | 30.0% | |
| TTGATCAAGAAACAAGAAAG+TGG | - | chr7.2:29601196-29601215 | None:intergenic | 30.0% | |
| TTTATATTTGAACAAGGCTG+AGG | + | chr7.2:29600547-29600566 | MS.gene27646:CDS | 30.0% | |
| ! | ATCTCTAATATCTTGCTATC+AGG | + | chr7.2:29601864-29601883 | MS.gene27646:CDS | 30.0% |
| ! | GGAAAGGTATGATATTTCTT+AGG | + | chr7.2:29601085-29601104 | MS.gene27646:intron | 30.0% |
| ! | TATATTTGTTAGCATCAACG+AGG | - | chr7.2:29601448-29601467 | None:intergenic | 30.0% |
| ! | TTCTGTCTTTGGTTTACTTT+GGG | + | chr7.2:29601652-29601671 | MS.gene27646:intron | 30.0% |
| ! | TTTATGTGTTTGATTAGCTC+GGG | + | chr7.2:29601523-29601542 | MS.gene27646:intron | 30.0% |
| ! | TTTCTGTCTTTGGTTTACTT+TGG | + | chr7.2:29601651-29601670 | MS.gene27646:intron | 30.0% |
| ! | TTTTTCGTCTATTCAAGGTT+AGG | + | chr7.2:29600678-29600697 | MS.gene27646:intron | 30.0% |
| !!! | TTTTTTTTGTGTGCCCATTT+TGG | + | chr7.2:29600744-29600763 | MS.gene27646:intron | 30.0% |
| ATACCTTTCCCAACAGAATT+AGG | - | chr7.2:29601075-29601094 | None:intergenic | 35.0% | |
| ATATGCAGAGCGATACAATA+TGG | + | chr7.2:29600581-29600600 | MS.gene27646:CDS | 35.0% | |
| CTAAGGGACACAAGTATAAA+AGG | + | chr7.2:29600861-29600880 | MS.gene27646:intron | 35.0% | |
| GGTTCCAAATTCTTGAGTAA+TGG | + | chr7.2:29600602-29600621 | MS.gene27646:CDS | 35.0% | |
| TACCTTTCCCAACAGAATTA+GGG | - | chr7.2:29601074-29601093 | None:intergenic | 35.0% | |
| TTCTTCGAAGTTTCTGTCTT+TGG | + | chr7.2:29601641-29601660 | MS.gene27646:intron | 35.0% | |
| ! | AAAAACTTTTCGTGCTAAGC+TGG | - | chr7.2:29600663-29600682 | None:intergenic | 35.0% |
| ! | TTATGTGTTTGATTAGCTCG+GGG | + | chr7.2:29601524-29601543 | MS.gene27646:intron | 35.0% |
| !!! | TTGATTTTTTTAGCTTGGCC+TGG | - | chr7.2:29601726-29601745 | None:intergenic | 35.0% |
| AAGCAAACAAAAGGAGCTGA+TGG | - | chr7.2:29601269-29601288 | None:intergenic | 40.0% | |
| AATATGTACCTCCTTGGTTG+AGG | + | chr7.2:29601399-29601418 | MS.gene27646:CDS | 40.0% | |
| ACCTTTCCCAACAGAATTAG+GGG | - | chr7.2:29601073-29601092 | None:intergenic | 40.0% | |
| ACTCTTTCACTCATCAAAGC+AGG | + | chr7.2:29601754-29601773 | MS.gene27646:CDS | 40.0% | |
| ATTGATACAGTGGTAGCAGT+TGG | + | chr7.2:29601778-29601797 | MS.gene27646:CDS | 40.0% | |
| ATTTCTTACGTCGATGACAC+CGG | - | chr7.2:29601238-29601257 | None:intergenic | 40.0% | |
| CTTGATCAATTTGTGTGGCT+TGG | + | chr7.2:29601207-29601226 | MS.gene27646:CDS | 40.0% | |
| TGAAACAAATCCAAATGCCC+CGG | - | chr7.2:29601845-29601864 | None:intergenic | 40.0% | |
| TGTTCGGATCTGACTTCTAA+GGG | + | chr7.2:29600845-29600864 | MS.gene27646:intron | 40.0% | |
| TTCCTCAATATGTACCTCCT+TGG | + | chr7.2:29601393-29601412 | MS.gene27646:CDS | 40.0% | |
| TTGTTCGGATCTGACTTCTA+AGG | + | chr7.2:29600844-29600863 | MS.gene27646:intron | 40.0% | |
| ! | AACCAAGGAGGTACATATTG+AGG | - | chr7.2:29601398-29601417 | None:intergenic | 40.0% |
| ! | ATTTCTCTCTACTGTTGGCT+GGG | + | chr7.2:29601370-29601389 | MS.gene27646:CDS | 40.0% |
| ! | TTCTTGAGTAATGGAGAACC+TGG | + | chr7.2:29600611-29600630 | MS.gene27646:CDS | 40.0% |
| !! | TTCTGATAGCTTTAGCAGCT+CGG | - | chr7.2:29602080-29602099 | None:intergenic | 40.0% |
| AGAAATCCGGCCAACTAGTT+CGG | - | chr7.2:29601356-29601375 | None:intergenic | 45.0% | |
| AGTGGACAGCAATGCATTCT+TGG | - | chr7.2:29601178-29601197 | None:intergenic | 45.0% | |
| ATGGACTTATCAGAGCATGC+AGG | - | chr7.2:29601030-29601049 | None:intergenic | 45.0% | |
| ATTTGAACAAGGCTGAGGCA+AGG | + | chr7.2:29600552-29600571 | MS.gene27646:CDS | 45.0% | |
| CCTTTCCCAACAGAATTAGG+GGG | - | chr7.2:29601072-29601091 | None:intergenic | 45.0% | |
| CTGATAAGTCCATCACCACA+GGG | + | chr7.2:29601037-29601056 | MS.gene27646:CDS | 45.0% | |
| GATGCAGAATGAGCAATACC+AGG | + | chr7.2:29601705-29601724 | MS.gene27646:intron | 45.0% | |
| GATTTCTCTCTACTGTTGGC+TGG | + | chr7.2:29601369-29601388 | MS.gene27646:CDS | 45.0% | |
| GCCAACAGTAGAGAGAAATC+CGG | - | chr7.2:29601369-29601388 | None:intergenic | 45.0% | |
| TAAGCCACAAACCTCAACCA+AGG | - | chr7.2:29601413-29601432 | None:intergenic | 45.0% | |
| TAGCACGCTATTGACAACAC+TGG | - | chr7.2:29601986-29602005 | None:intergenic | 45.0% | |
| TCAACATTCTGCGCTTTACC+AGG | - | chr7.2:29600632-29600651 | None:intergenic | 45.0% | |
| TCTGATAAGTCCATCACCAC+AGG | + | chr7.2:29601036-29601055 | MS.gene27646:CDS | 45.0% | |
| TTGTCAATAGCGTGCTACAG+AGG | + | chr7.2:29601989-29602008 | MS.gene27646:intron | 45.0% | |
| TTTGAACAAGGCTGAGGCAA+GGG | + | chr7.2:29600553-29600572 | MS.gene27646:CDS | 45.0% | |
| ! | AAAGAGCGTACCGAACTAGT+TGG | + | chr7.2:29601343-29601362 | MS.gene27646:CDS | 45.0% |
| !! | CAAAGCAGGCATTGATACAG+TGG | + | chr7.2:29601768-29601787 | MS.gene27646:CDS | 45.0% |
| AAAGTCACTCCCCGTGTTAC+CGG | + | chr7.2:29601823-29601842 | MS.gene27646:CDS | 50.0% | |
| AACACGGGGAGTGACTTTCT+CGG | - | chr7.2:29601821-29601840 | None:intergenic | 50.0% | |
| ACCTCCTTGGTTGAGGTTTG+TGG | + | chr7.2:29601406-29601425 | MS.gene27646:intron | 50.0% | |
| AGCAGTTGGACTGCTTCAGT+TGG | + | chr7.2:29601792-29601811 | MS.gene27646:CDS | 50.0% | |
| ATCCAAATGCCCCGGTAACA+CGG | - | chr7.2:29601837-29601856 | None:intergenic | 50.0% | |
| CCCCCTAATTCTGTTGGGAA+AGG | + | chr7.2:29601069-29601088 | MS.gene27646:CDS | 50.0% | |
| GAGCACATTGGATGCAACCA+GGG | + | chr7.2:29600505-29600524 | MS.gene27646:CDS | 50.0% | |
| GCCGGATTTCTCTCTACTGT+TGG | + | chr7.2:29601365-29601384 | MS.gene27646:CDS | 50.0% | |
| TCCCAACAGAATTAGGGGGA+GGG | - | chr7.2:29601068-29601087 | None:intergenic | 50.0% | |
| TGAGCACATTGGATGCAACC+AGG | + | chr7.2:29600504-29600523 | MS.gene27646:CDS | 50.0% | |
| TTCCCAACAGAATTAGGGGG+AGG | - | chr7.2:29601069-29601088 | None:intergenic | 50.0% | |
| ! | AGCTCGGACAGCAGCTATTT+TGG | - | chr7.2:29602064-29602083 | None:intergenic | 50.0% |
| ! | GCTACAGAGGTGTAGCAGAT+GGG | + | chr7.2:29602002-29602021 | MS.gene27646:intron | 50.0% |
| ! | TGCTACAGAGGTGTAGCAGA+TGG | + | chr7.2:29602001-29602020 | MS.gene27646:intron | 50.0% |
| ! | TTTGATTAGCTCGGGGAGCT+TGG | + | chr7.2:29601531-29601550 | MS.gene27646:intron | 50.0% |
| ! | TTTGTGTGGCTTGGCAGAAC+CGG | + | chr7.2:29601216-29601235 | MS.gene27646:CDS | 50.0% |
| AAGAAGGCCAAGTTCTGCCC+TGG | - | chr7.2:29600525-29600544 | None:intergenic | 55.0% | |
| AAGTCACTCCCCGTGTTACC+GGG | + | chr7.2:29601824-29601843 | MS.gene27646:CDS | 55.0% | |
| ACACGGGGAGTGACTTTCTC+GGG | - | chr7.2:29601820-29601839 | None:intergenic | 55.0% | |
| ACCCCTCCCCCTAATTCTGT+TGG | + | chr7.2:29601063-29601082 | MS.gene27646:CDS | 55.0% | |
| AGCGTACCGAACTAGTTGGC+CGG | + | chr7.2:29601347-29601366 | MS.gene27646:CDS | 55.0% | |
| CCCAACAGAATTAGGGGGAG+GGG | - | chr7.2:29601067-29601086 | None:intergenic | 55.0% | |
| CCCCTCCCCCTAATTCTGTT+GGG | + | chr7.2:29601064-29601083 | MS.gene27646:CDS | 55.0% | |
| GATGCAACCAGGGCAGAACT+TGG | + | chr7.2:29600515-29600534 | MS.gene27646:CDS | 55.0% | |
| GCCACAAACCTCAACCAAGG+AGG | - | chr7.2:29601410-29601429 | None:intergenic | 55.0% | |
| GGGGAGCTTGGAAGACTTTC+TGG | + | chr7.2:29601543-29601562 | MS.gene27646:CDS | 55.0% | |
| TCCAAATGCCCCGGTAACAC+GGG | - | chr7.2:29601836-29601855 | None:intergenic | 55.0% | |
| AGTCACTCCCCGTGTTACCG+GGG | + | chr7.2:29601825-29601844 | MS.gene27646:CDS | 60.0% | |
| CCAAATGCCCCGGTAACACG+GGG | - | chr7.2:29601835-29601854 | None:intergenic | 60.0% | |
| ! | AGGGGTGTACCCTGTGGTGA+TGG | - | chr7.2:29601049-29601068 | None:intergenic | 60.0% |
| ! | CCCCGTGTTACCGGGGCATT+TGG | + | chr7.2:29601832-29601851 | MS.gene27646:CDS | 65.0% |
| ! | AGGGGGAGGGGTGTACCCTG+TGG | - | chr7.2:29601055-29601074 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 29600503 | 29602107 | 29600503 | ID=MS.gene27646 |
| chr7.2 | mRNA | 29600503 | 29602107 | 29600503 | ID=MS.gene27646.t1;Parent=MS.gene27646 |
| chr7.2 | exon | 29600503 | 29600694 | 29600503 | ID=MS.gene27646.t1.exon1;Parent=MS.gene27646.t1 |
| chr7.2 | CDS | 29600503 | 29600694 | 29600503 | ID=cds.MS.gene27646.t1;Parent=MS.gene27646.t1 |
| chr7.2 | exon | 29601016 | 29601090 | 29601016 | ID=MS.gene27646.t1.exon2;Parent=MS.gene27646.t1 |
| chr7.2 | CDS | 29601016 | 29601090 | 29601016 | ID=cds.MS.gene27646.t1;Parent=MS.gene27646.t1 |
| chr7.2 | exon | 29601174 | 29601248 | 29601174 | ID=MS.gene27646.t1.exon3;Parent=MS.gene27646.t1 |
| chr7.2 | CDS | 29601174 | 29601248 | 29601174 | ID=cds.MS.gene27646.t1;Parent=MS.gene27646.t1 |
| chr7.2 | exon | 29601340 | 29601420 | 29601340 | ID=MS.gene27646.t1.exon4;Parent=MS.gene27646.t1 |
| chr7.2 | CDS | 29601340 | 29601420 | 29601340 | ID=cds.MS.gene27646.t1;Parent=MS.gene27646.t1 |
| chr7.2 | exon | 29601540 | 29601614 | 29601540 | ID=MS.gene27646.t1.exon5;Parent=MS.gene27646.t1 |
| chr7.2 | CDS | 29601540 | 29601614 | 29601540 | ID=cds.MS.gene27646.t1;Parent=MS.gene27646.t1 |
| chr7.2 | exon | 29601712 | 29601885 | 29601712 | ID=MS.gene27646.t1.exon6;Parent=MS.gene27646.t1 |
| chr7.2 | CDS | 29601712 | 29601885 | 29601712 | ID=cds.MS.gene27646.t1;Parent=MS.gene27646.t1 |
| chr7.2 | exon | 29602009 | 29602107 | 29602009 | ID=MS.gene27646.t1.exon7;Parent=MS.gene27646.t1 |
| chr7.2 | CDS | 29602009 | 29602107 | 29602009 | ID=cds.MS.gene27646.t1;Parent=MS.gene27646.t1 |
| Gene Sequence |
| Protein sequence |
