Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42234.t1 | PNX71235.1 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 1.50E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42234.t1 | Q9LQ73 | 81.2 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 1.7e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42234.t1 | A0A2K3KY74 | 89.5 | 256 | 25 | 1 | 1 | 256 | 1 | 254 | 1.1e-121 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055849 | MS.gene42234 | 0.823852 | 1.11E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42234 | MS.gene52171 | PPI |
| MS.gene27646 | MS.gene42234 | PPI |
| MS.gene023794 | MS.gene42234 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42234.t1 | MTR_7g076200 | 99.554 | 224 | 1 | 0 | 1 | 224 | 1 | 224 | 2.73e-165 | 456 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42234.t1 | AT1G01820 | 81.250 | 224 | 42 | 0 | 1 | 224 | 1 | 224 | 8.23e-139 | 390 |
| MS.gene42234.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 8.76e-135 | 379 |
| MS.gene42234.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 8.76e-135 | 379 |
| MS.gene42234.t1 | AT2G45740 | 78.027 | 223 | 49 | 0 | 2 | 224 | 3 | 225 | 8.76e-135 | 379 |
| MS.gene42234.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 9.56e-130 | 367 |
| MS.gene42234.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 9.56e-130 | 367 |
| MS.gene42234.t1 | AT3G61070 | 77.232 | 224 | 47 | 1 | 1 | 224 | 1 | 220 | 9.56e-130 | 367 |
Find 63 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGAGCTTGGAAGACTTTC+TGG | 0.141997 | 7.3:+29578722 | MS.gene42234:CDS |
| ATACCTTTCCCAACAGAATT+AGG | 0.150440 | 7.3:-29578252 | None:intergenic |
| TTCTCCATTACTCAAGAATT+TGG | 0.176496 | 7.3:-29577786 | None:intergenic |
| AGCTCGGACAGCAGCTATTT+TGG | 0.221592 | 7.3:-29579240 | None:intergenic |
| TACCTTTCCCAACAGAATTA+GGG | 0.287612 | 7.3:-29578251 | None:intergenic |
| CCCCGTGTTACCGGGGCATT+TGG | 0.290157 | 7.3:+29579011 | MS.gene42234:CDS |
| GATTTCTCTCTACTGTTGGC+TGG | 0.307117 | 7.3:+29578548 | MS.gene42234:CDS |
| ATCTCTAATATCTTGCTATC+AGG | 0.317696 | 7.3:+29579043 | MS.gene42234:CDS |
| AAAGTCACTCCCCGTGTTAC+CGG | 0.327800 | 7.3:+29579002 | MS.gene42234:CDS |
| AGTGGACAGCAATGCATTCT+TGG | 0.368945 | 7.3:-29578354 | None:intergenic |
| AGGGGTGTACCCTGTGGTGA+TGG | 0.409784 | 7.3:-29578226 | None:intergenic |
| GCCGGATTTCTCTCTACTGT+TGG | 0.411303 | 7.3:+29578544 | MS.gene42234:CDS |
| CTTGATCAATTTGTGTGGCT+TGG | 0.417533 | 7.3:+29578386 | MS.gene42234:CDS |
| ATATGCAGAGCGATACAATA+TGG | 0.438108 | 7.3:+29577761 | MS.gene42234:CDS |
| TTTGATTAGCTCGGGGAGCT+TGG | 0.445739 | 7.3:+29578710 | MS.gene42234:intron |
| AATATGTACCTCCTTGGTTG+AGG | 0.447824 | 7.3:+29578578 | MS.gene42234:CDS |
| TTCTGATAGCTTTAGCAGCT+CGG | 0.456319 | 7.3:-29579256 | None:intergenic |
| TTCCTCAATATGTACCTCCT+TGG | 0.461177 | 7.3:+29578572 | MS.gene42234:CDS |
| TTTGTGTGGCTTGGCAGAAC+CGG | 0.466339 | 7.3:+29578395 | MS.gene42234:CDS |
| AGAAATCCGGCCAACTAGTT+CGG | 0.469145 | 7.3:-29578532 | None:intergenic |
| GGTTCCAAATTCTTGAGTAA+TGG | 0.475299 | 7.3:+29577782 | MS.gene42234:CDS |
| AACACGGGGAGTGACTTTCT+CGG | 0.476441 | 7.3:-29578997 | None:intergenic |
| TCAACATTCTGCGCTTTACC+AGG | 0.477818 | 7.3:-29577809 | None:intergenic |
| AAGTCACTCCCCGTGTTACC+GGG | 0.483116 | 7.3:+29579003 | MS.gene42234:CDS |
| ATTTCTCTCTACTGTTGGCT+GGG | 0.484195 | 7.3:+29578549 | MS.gene42234:CDS |
| ATCCAAATGCCCCGGTAACA+CGG | 0.484737 | 7.3:-29579013 | None:intergenic |
| TCCAAATGCCCCGGTAACAC+GGG | 0.487559 | 7.3:-29579012 | None:intergenic |
| ACACGGGGAGTGACTTTCTC+GGG | 0.492261 | 7.3:-29578996 | None:intergenic |
| GATGCAACCAGGGCAGAACT+TGG | 0.500278 | 7.3:+29577695 | MS.gene42234:CDS |
| TTGATCAAGAAACAAGAAAG+TGG | 0.509019 | 7.3:-29578372 | None:intergenic |
| TGCTACAGAGGTGTAGCAGA+TGG | 0.517681 | 7.3:+29579180 | MS.gene42234:intron |
| TTTATATTTGAACAAGGCTG+AGG | 0.519097 | 7.3:+29577727 | MS.gene42234:CDS |
| TTTGAACAAGGCTGAGGCAA+GGG | 0.529250 | 7.3:+29577733 | MS.gene42234:CDS |
| AACCAAGGAGGTACATATTG+AGG | 0.535412 | 7.3:-29578574 | None:intergenic |
| ACTCTTTCACTCATCAAAGC+AGG | 0.538753 | 7.3:+29578933 | MS.gene42234:CDS |
| TTCTTGAGTAATGGAGAACC+TGG | 0.539146 | 7.3:+29577791 | MS.gene42234:CDS |
| TGAGCACATTGGATGCAACC+AGG | 0.549904 | 7.3:+29577684 | MS.gene42234:CDS |
| AAGAAGGCCAAGTTCTGCCC+TGG | 0.549964 | 7.3:-29577702 | None:intergenic |
| TGTTTCTTGATCAATTTGTG+TGG | 0.551401 | 7.3:+29578381 | MS.gene42234:CDS |
| AGCAGTTGGACTGCTTCAGT+TGG | 0.552071 | 7.3:+29578971 | MS.gene42234:CDS |
| GCTTGGCAGAACCGGTGTCA+TGG | 0.554788 | 7.3:+29578403 | MS.gene42234:CDS |
| TCTGATAAGTCCATCACCAC+AGG | 0.563882 | 7.3:+29578216 | MS.gene42234:CDS |
| AGCATTGAAAATGAGCACAT+TGG | 0.576046 | 7.3:+29577673 | None:intergenic |
| ATTTGAACAAGGCTGAGGCA+AGG | 0.577561 | 7.3:+29577732 | MS.gene42234:CDS |
| GCCAACAGTAGAGAGAAATC+CGG | 0.577756 | 7.3:-29578545 | None:intergenic |
| AGCGTACCGAACTAGTTGGC+CGG | 0.581306 | 7.3:+29578526 | MS.gene42234:CDS |
| GCTACAGAGGTGTAGCAGAT+GGG | 0.589217 | 7.3:+29579181 | MS.gene42234:intron |
| AAAGAGCGTACCGAACTAGT+TGG | 0.593530 | 7.3:+29578522 | MS.gene42234:CDS |
| TGTTCAAATATAAAACAAGA+AGG | 0.596092 | 7.3:-29577718 | None:intergenic |
| TGAAACAAATCCAAATGCCC+CGG | 0.597552 | 7.3:-29579021 | None:intergenic |
| ACCTTTCCCAACAGAATTAG+GGG | 0.608517 | 7.3:-29578250 | None:intergenic |
| ATTTCTTACGTCCATGACAC+CGG | 0.608857 | 7.3:-29578414 | None:intergenic |
| GAGCACATTGGATGCAACCA+GGG | 0.617935 | 7.3:+29577685 | MS.gene42234:CDS |
| ATTGATACAGTGGTAGCAGT+TGG | 0.619234 | 7.3:+29578957 | MS.gene42234:CDS |
| GATGCAGAATGAGCAATACC+AGG | 0.621633 | 7.3:+29578884 | MS.gene42234:intron |
| ATGGACTTATCAGAGCATGC+AGG | 0.623130 | 7.3:-29578207 | None:intergenic |
| AGTCACTCCCCGTGTTACCG+GGG | 0.628907 | 7.3:+29579004 | MS.gene42234:CDS |
| CAAAGCAGGCATTGATACAG+TGG | 0.634472 | 7.3:+29578947 | MS.gene42234:CDS |
| CCAAATGCCCCGGTAACACG+GGG | 0.648543 | 7.3:-29579011 | None:intergenic |
| CTGATAAGTCCATCACCACA+GGG | 0.670101 | 7.3:+29578217 | MS.gene42234:CDS |
| CCTTTCCCAACAGAATTAGG+GGG | 0.673035 | 7.3:-29578249 | None:intergenic |
| TAAGCCACAAACCTCAACCA+AGG | 0.690033 | 7.3:-29578589 | None:intergenic |
| GCCACAAACCTCAACCAAGG+AGG | 0.724104 | 7.3:-29578586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAAAGATTGAAA+AGG | - | chr7.3:29578301-29578320 | None:intergenic | 10.0% |
| !! | AAAAAAGTGAAGAAATAAAA+AGG | - | chr7.3:29578665-29578684 | None:intergenic | 15.0% |
| !! | AAAAAAATCAACAAGACATT+AGG | - | chr7.3:29578325-29578344 | None:intergenic | 20.0% |
| !! | TATGCTTAATATTCTTTGTT+CGG | + | chr7.3:29578009-29578028 | MS.gene42234:intron | 20.0% |
| !! | TGTTCAAATATAAAACAAGA+AGG | - | chr7.3:29577721-29577740 | None:intergenic | 20.0% |
| !! | TTATTGCATGAACTAATTAA+TGG | - | chr7.3:29578155-29578174 | None:intergenic | 20.0% |
| !! | TTTAAACAAATCAATCATAG+AGG | - | chr7.3:29577972-29577991 | None:intergenic | 20.0% |
| !!! | TATGCAGATACAAAATTTTA+GGG | - | chr7.3:29579121-29579140 | None:intergenic | 20.0% |
| !!! | TCTTGTTTTATATTTGAACA+AGG | + | chr7.3:29577721-29577740 | MS.gene42234:CDS | 20.0% |
| ! | ACACATAAAATGTCATACAT+AGG | - | chr7.3:29578691-29578710 | None:intergenic | 25.0% |
| ! | AGCTAAAAAAATCAAATGAG+AGG | + | chr7.3:29578910-29578929 | MS.gene42234:CDS | 25.0% |
| ! | ATAATACAGAAGCAAACAAA+AGG | - | chr7.3:29578457-29578476 | None:intergenic | 25.0% |
| ! | ATCCATAAGTAATAAAGGTA+AGG | - | chr7.3:29578867-29578886 | None:intergenic | 25.0% |
| ! | CACACAAAAAAAAGGATAAA+TGG | - | chr7.3:29577917-29577936 | None:intergenic | 25.0% |
| ! | TTCCTTACCTTTATTACTTA+TGG | + | chr7.3:29578862-29578881 | MS.gene42234:intron | 25.0% |
| !! | AAAAGTTTTTCGTCTATTCA+AGG | + | chr7.3:29577853-29577872 | MS.gene42234:CDS | 25.0% |
| !! | AAGAAATAAAAAGGCATGAT+TGG | - | chr7.3:29578656-29578675 | None:intergenic | 25.0% |
| !! | GTATGCAGATACAAAATTTT+AGG | - | chr7.3:29579122-29579141 | None:intergenic | 25.0% |
| !!! | AGTTTGCTTCTTATTTTTCT+TGG | + | chr7.3:29579092-29579111 | MS.gene42234:intron | 25.0% |
| !!! | CTCATTTGATTTTTTTAGCT+TGG | - | chr7.3:29578910-29578929 | None:intergenic | 25.0% |
| !!! | TTTTATGTGTTTGATTAGCT+CGG | + | chr7.3:29578701-29578720 | MS.gene42234:intron | 25.0% |
| AAAATGGGCACACAAAAAAA+AGG | - | chr7.3:29577925-29577944 | None:intergenic | 30.0% | |
| ATAAAATCCGTGTATAGTGT+TGG | - | chr7.3:29578486-29578505 | None:intergenic | 30.0% | |
| GAAGAATTTATACACATGCA+TGG | - | chr7.3:29578806-29578825 | None:intergenic | 30.0% | |
| TATAAAGCGTGTACCAAAAT+GGG | - | chr7.3:29577940-29577959 | None:intergenic | 30.0% | |
| TCTGCATCCATAAGTAATAA+AGG | - | chr7.3:29578872-29578891 | None:intergenic | 30.0% | |
| TGTTTCTTGATCAATTTGTG+TGG | + | chr7.3:29578381-29578400 | MS.gene42234:CDS | 30.0% | |
| TTATAAAGCGTGTACCAAAA+TGG | - | chr7.3:29577941-29577960 | None:intergenic | 30.0% | |
| TTATCATCCAACACTATACA+CGG | + | chr7.3:29578476-29578495 | MS.gene42234:intron | 30.0% | |
| TTCCACGTCAGAAAATATAT+TGG | - | chr7.3:29578123-29578142 | None:intergenic | 30.0% | |
| TTCTCCATTACTCAAGAATT+TGG | - | chr7.3:29577789-29577808 | None:intergenic | 30.0% | |
| TTGATCAAGAAACAAGAAAG+TGG | - | chr7.3:29578375-29578394 | None:intergenic | 30.0% | |
| TTTATATTTGAACAAGGCTG+AGG | + | chr7.3:29577727-29577746 | MS.gene42234:CDS | 30.0% | |
| ! | ATCTCTAATATCTTGCTATC+AGG | + | chr7.3:29579043-29579062 | MS.gene42234:CDS | 30.0% |
| ! | GGAAAGGTATGATATTTCTT+AGG | + | chr7.3:29578265-29578284 | MS.gene42234:intron | 30.0% |
| ! | TATATTTGTTAGCATCAACG+AGG | - | chr7.3:29578627-29578646 | None:intergenic | 30.0% |
| ! | TTCCAATATATTTTCTGACG+TGG | + | chr7.3:29578118-29578137 | MS.gene42234:intron | 30.0% |
| ! | TTCTGTCTTTGGTTTACTTT+GGG | + | chr7.3:29578831-29578850 | MS.gene42234:intron | 30.0% |
| ! | TTTATGTGTTTGATTAGCTC+GGG | + | chr7.3:29578702-29578721 | MS.gene42234:intron | 30.0% |
| ! | TTTCTGTCTTTGGTTTACTT+TGG | + | chr7.3:29578830-29578849 | MS.gene42234:intron | 30.0% |
| ! | TTTTTCGTCTATTCAAGGTT+AGG | + | chr7.3:29577858-29577877 | MS.gene42234:intron | 30.0% |
| !!! | TTTTTTTTGTGTGCCCATTT+TGG | + | chr7.3:29577924-29577943 | MS.gene42234:intron | 30.0% |
| ATACCTTTCCCAACAGAATT+AGG | - | chr7.3:29578255-29578274 | None:intergenic | 35.0% | |
| ATATGCAGAGCGATACAATA+TGG | + | chr7.3:29577761-29577780 | MS.gene42234:CDS | 35.0% | |
| CTAAGGGACACAAGTATAAA+AGG | + | chr7.3:29578041-29578060 | MS.gene42234:intron | 35.0% | |
| GGTTCCAAATTCTTGAGTAA+TGG | + | chr7.3:29577782-29577801 | MS.gene42234:CDS | 35.0% | |
| TACCTTTCCCAACAGAATTA+GGG | - | chr7.3:29578254-29578273 | None:intergenic | 35.0% | |
| TTCTTCGAAGTTTCTGTCTT+TGG | + | chr7.3:29578820-29578839 | MS.gene42234:intron | 35.0% | |
| ! | AAAAACTTTTCGTGCTAAGC+TGG | - | chr7.3:29577843-29577862 | None:intergenic | 35.0% |
| ! | TTATGTGTTTGATTAGCTCG+GGG | + | chr7.3:29578703-29578722 | MS.gene42234:intron | 35.0% |
| !!! | TTGATTTTTTTAGCTTGGCC+TGG | - | chr7.3:29578905-29578924 | None:intergenic | 35.0% |
| AAGCAAACAAAAGGAGCTGA+TGG | - | chr7.3:29578448-29578467 | None:intergenic | 40.0% | |
| AATATGTACCTCCTTGGTTG+AGG | + | chr7.3:29578578-29578597 | MS.gene42234:CDS | 40.0% | |
| ACCTTTCCCAACAGAATTAG+GGG | - | chr7.3:29578253-29578272 | None:intergenic | 40.0% | |
| ACTCTTTCACTCATCAAAGC+AGG | + | chr7.3:29578933-29578952 | MS.gene42234:CDS | 40.0% | |
| ATTGATACAGTGGTAGCAGT+TGG | + | chr7.3:29578957-29578976 | MS.gene42234:CDS | 40.0% | |
| ATTTCTTACGTCCATGACAC+CGG | - | chr7.3:29578417-29578436 | None:intergenic | 40.0% | |
| CTTGATCAATTTGTGTGGCT+TGG | + | chr7.3:29578386-29578405 | MS.gene42234:CDS | 40.0% | |
| TGAAACAAATCCAAATGCCC+CGG | - | chr7.3:29579024-29579043 | None:intergenic | 40.0% | |
| TGTTCGGATCTGACTTCTAA+GGG | + | chr7.3:29578025-29578044 | MS.gene42234:intron | 40.0% | |
| TTCCTCAATATGTACCTCCT+TGG | + | chr7.3:29578572-29578591 | MS.gene42234:CDS | 40.0% | |
| TTGTTCGGATCTGACTTCTA+AGG | + | chr7.3:29578024-29578043 | MS.gene42234:intron | 40.0% | |
| ! | AACCAAGGAGGTACATATTG+AGG | - | chr7.3:29578577-29578596 | None:intergenic | 40.0% |
| ! | ATTTCTCTCTACTGTTGGCT+GGG | + | chr7.3:29578549-29578568 | MS.gene42234:CDS | 40.0% |
| ! | TTCTTGAGTAATGGAGAACC+TGG | + | chr7.3:29577791-29577810 | MS.gene42234:CDS | 40.0% |
| !! | TTCTGATAGCTTTAGCAGCT+CGG | - | chr7.3:29579259-29579278 | None:intergenic | 40.0% |
| AGAAATCCGGCCAACTAGTT+CGG | - | chr7.3:29578535-29578554 | None:intergenic | 45.0% | |
| AGTGGACAGCAATGCATTCT+TGG | - | chr7.3:29578357-29578376 | None:intergenic | 45.0% | |
| ATGGACTTATCAGAGCATGC+AGG | - | chr7.3:29578210-29578229 | None:intergenic | 45.0% | |
| ATTTGAACAAGGCTGAGGCA+AGG | + | chr7.3:29577732-29577751 | MS.gene42234:CDS | 45.0% | |
| CCTTTCCCAACAGAATTAGG+GGG | - | chr7.3:29578252-29578271 | None:intergenic | 45.0% | |
| CTGATAAGTCCATCACCACA+GGG | + | chr7.3:29578217-29578236 | MS.gene42234:CDS | 45.0% | |
| GATGCAGAATGAGCAATACC+AGG | + | chr7.3:29578884-29578903 | MS.gene42234:intron | 45.0% | |
| GATTTCTCTCTACTGTTGGC+TGG | + | chr7.3:29578548-29578567 | MS.gene42234:CDS | 45.0% | |
| GCCAACAGTAGAGAGAAATC+CGG | - | chr7.3:29578548-29578567 | None:intergenic | 45.0% | |
| TAAGCCACAAACCTCAACCA+AGG | - | chr7.3:29578592-29578611 | None:intergenic | 45.0% | |
| TAGCACGCTATTGACAACAC+TGG | - | chr7.3:29579165-29579184 | None:intergenic | 45.0% | |
| TCAACATTCTGCGCTTTACC+AGG | - | chr7.3:29577812-29577831 | None:intergenic | 45.0% | |
| TCTGATAAGTCCATCACCAC+AGG | + | chr7.3:29578216-29578235 | MS.gene42234:CDS | 45.0% | |
| TTGTCAATAGCGTGCTACAG+AGG | + | chr7.3:29579168-29579187 | MS.gene42234:intron | 45.0% | |
| TTTGAACAAGGCTGAGGCAA+GGG | + | chr7.3:29577733-29577752 | MS.gene42234:CDS | 45.0% | |
| ! | AAAGAGCGTACCGAACTAGT+TGG | + | chr7.3:29578522-29578541 | MS.gene42234:CDS | 45.0% |
| !! | CAAAGCAGGCATTGATACAG+TGG | + | chr7.3:29578947-29578966 | MS.gene42234:CDS | 45.0% |
| AAAGTCACTCCCCGTGTTAC+CGG | + | chr7.3:29579002-29579021 | MS.gene42234:CDS | 50.0% | |
| AACACGGGGAGTGACTTTCT+CGG | - | chr7.3:29579000-29579019 | None:intergenic | 50.0% | |
| ACCTCCTTGGTTGAGGTTTG+TGG | + | chr7.3:29578585-29578604 | MS.gene42234:intron | 50.0% | |
| AGCAGTTGGACTGCTTCAGT+TGG | + | chr7.3:29578971-29578990 | MS.gene42234:CDS | 50.0% | |
| ATCCAAATGCCCCGGTAACA+CGG | - | chr7.3:29579016-29579035 | None:intergenic | 50.0% | |
| CCCCCTAATTCTGTTGGGAA+AGG | + | chr7.3:29578249-29578268 | MS.gene42234:CDS | 50.0% | |
| GAGCACATTGGATGCAACCA+GGG | + | chr7.3:29577685-29577704 | MS.gene42234:CDS | 50.0% | |
| GCCGGATTTCTCTCTACTGT+TGG | + | chr7.3:29578544-29578563 | MS.gene42234:CDS | 50.0% | |
| TCCCAACAGAATTAGGGGGA+GGG | - | chr7.3:29578248-29578267 | None:intergenic | 50.0% | |
| TGAGCACATTGGATGCAACC+AGG | + | chr7.3:29577684-29577703 | MS.gene42234:CDS | 50.0% | |
| TTCCCAACAGAATTAGGGGG+AGG | - | chr7.3:29578249-29578268 | None:intergenic | 50.0% | |
| ! | AGCTCGGACAGCAGCTATTT+TGG | - | chr7.3:29579243-29579262 | None:intergenic | 50.0% |
| ! | GCTACAGAGGTGTAGCAGAT+GGG | + | chr7.3:29579181-29579200 | MS.gene42234:intron | 50.0% |
| ! | TGCTACAGAGGTGTAGCAGA+TGG | + | chr7.3:29579180-29579199 | MS.gene42234:intron | 50.0% |
| ! | TTTGATTAGCTCGGGGAGCT+TGG | + | chr7.3:29578710-29578729 | MS.gene42234:intron | 50.0% |
| ! | TTTGTGTGGCTTGGCAGAAC+CGG | + | chr7.3:29578395-29578414 | MS.gene42234:CDS | 50.0% |
| AAGAAGGCCAAGTTCTGCCC+TGG | - | chr7.3:29577705-29577724 | None:intergenic | 55.0% | |
| AAGTCACTCCCCGTGTTACC+GGG | + | chr7.3:29579003-29579022 | MS.gene42234:CDS | 55.0% | |
| ACACGGGGAGTGACTTTCTC+GGG | - | chr7.3:29578999-29579018 | None:intergenic | 55.0% | |
| ACCCCTCCCCCTAATTCTGT+TGG | + | chr7.3:29578243-29578262 | MS.gene42234:CDS | 55.0% | |
| AGCGTACCGAACTAGTTGGC+CGG | + | chr7.3:29578526-29578545 | MS.gene42234:CDS | 55.0% | |
| CCCAACAGAATTAGGGGGAG+GGG | - | chr7.3:29578247-29578266 | None:intergenic | 55.0% | |
| CCCCTCCCCCTAATTCTGTT+GGG | + | chr7.3:29578244-29578263 | MS.gene42234:CDS | 55.0% | |
| GATGCAACCAGGGCAGAACT+TGG | + | chr7.3:29577695-29577714 | MS.gene42234:CDS | 55.0% | |
| GCCACAAACCTCAACCAAGG+AGG | - | chr7.3:29578589-29578608 | None:intergenic | 55.0% | |
| GGGGAGCTTGGAAGACTTTC+TGG | + | chr7.3:29578722-29578741 | MS.gene42234:CDS | 55.0% | |
| TCCAAATGCCCCGGTAACAC+GGG | - | chr7.3:29579015-29579034 | None:intergenic | 55.0% | |
| AGTCACTCCCCGTGTTACCG+GGG | + | chr7.3:29579004-29579023 | MS.gene42234:CDS | 60.0% | |
| CCAAATGCCCCGGTAACACG+GGG | - | chr7.3:29579014-29579033 | None:intergenic | 60.0% | |
| ! | AGGGGTGTACCCTGTGGTGA+TGG | - | chr7.3:29578229-29578248 | None:intergenic | 60.0% |
| ! | GCTTGGCAGAACCGGTGTCA+TGG | + | chr7.3:29578403-29578422 | MS.gene42234:CDS | 60.0% |
| ! | CCCCGTGTTACCGGGGCATT+TGG | + | chr7.3:29579011-29579030 | MS.gene42234:CDS | 65.0% |
| ! | AGGGGGAGGGGTGTACCCTG+TGG | - | chr7.3:29578235-29578254 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 29577683 | 29579286 | 29577683 | ID=MS.gene42234 |
| chr7.3 | mRNA | 29577683 | 29579286 | 29577683 | ID=MS.gene42234.t1;Parent=MS.gene42234 |
| chr7.3 | exon | 29577683 | 29577874 | 29577683 | ID=MS.gene42234.t1.exon1;Parent=MS.gene42234.t1 |
| chr7.3 | CDS | 29577683 | 29577874 | 29577683 | ID=cds.MS.gene42234.t1;Parent=MS.gene42234.t1 |
| chr7.3 | exon | 29578196 | 29578270 | 29578196 | ID=MS.gene42234.t1.exon2;Parent=MS.gene42234.t1 |
| chr7.3 | CDS | 29578196 | 29578270 | 29578196 | ID=cds.MS.gene42234.t1;Parent=MS.gene42234.t1 |
| chr7.3 | exon | 29578353 | 29578427 | 29578353 | ID=MS.gene42234.t1.exon3;Parent=MS.gene42234.t1 |
| chr7.3 | CDS | 29578353 | 29578427 | 29578353 | ID=cds.MS.gene42234.t1;Parent=MS.gene42234.t1 |
| chr7.3 | exon | 29578519 | 29578599 | 29578519 | ID=MS.gene42234.t1.exon4;Parent=MS.gene42234.t1 |
| chr7.3 | CDS | 29578519 | 29578599 | 29578519 | ID=cds.MS.gene42234.t1;Parent=MS.gene42234.t1 |
| chr7.3 | exon | 29578719 | 29578793 | 29578719 | ID=MS.gene42234.t1.exon5;Parent=MS.gene42234.t1 |
| chr7.3 | CDS | 29578719 | 29578793 | 29578719 | ID=cds.MS.gene42234.t1;Parent=MS.gene42234.t1 |
| chr7.3 | exon | 29578891 | 29579064 | 29578891 | ID=MS.gene42234.t1.exon6;Parent=MS.gene42234.t1 |
| chr7.3 | CDS | 29578891 | 29579064 | 29578891 | ID=cds.MS.gene42234.t1;Parent=MS.gene42234.t1 |
| chr7.3 | exon | 29579188 | 29579286 | 29579188 | ID=MS.gene42234.t1.exon7;Parent=MS.gene42234.t1 |
| chr7.3 | CDS | 29579188 | 29579286 | 29579188 | ID=cds.MS.gene42234.t1;Parent=MS.gene42234.t1 |
| Gene Sequence |
| Protein sequence |
