Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023904.t1 | XP_003623975.1 | 96.4 | 527 | 19 | 0 | 1 | 527 | 1 | 527 | 1.90E-288 | 1001.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023904.t1 | Q6EWX0 | 57.4 | 531 | 215 | 6 | 3 | 532 | 4 | 524 | 1.0e-168 | 594.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023904.t1 | G7L4P5 | 96.4 | 527 | 19 | 0 | 1 | 527 | 1 | 527 | 1.4e-288 | 1001.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023904 | MS.gene041794 | PPI |
| MS.gene61735 | MS.gene023904 | PPI |
| MS.gene072702 | MS.gene023904 | PPI |
| MS.gene023904 | MS.gene028307 | PPI |
| MS.gene023904 | MS.gene07051 | PPI |
| MS.gene023904 | MS.gene36485 | PPI |
| MS.gene041861 | MS.gene023904 | PPI |
| MS.gene023904 | MS.gene061260 | PPI |
| MS.gene35150 | MS.gene023904 | PPI |
| MS.gene023147 | MS.gene023904 | PPI |
| MS.gene28807 | MS.gene023904 | PPI |
| MS.gene22500 | MS.gene023904 | PPI |
| MS.gene61736 | MS.gene023904 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023904.t1 | MTR_7g077840 | 96.964 | 527 | 16 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1049 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023904.t1 | AT4G29910 | 58.365 | 526 | 208 | 6 | 3 | 527 | 4 | 519 | 0.0 | 619 |
| MS.gene023904.t1 | AT4G29910 | 58.004 | 531 | 212 | 6 | 3 | 532 | 34 | 554 | 0.0 | 617 |
Find 103 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGAACGATGTATTTA+AGG | 0.039494 | 7.1:+25861664 | MS.gene023904:CDS |
| TTACTTCCTTTGTTTGTTTA+TGG | 0.082867 | 7.1:+25860800 | MS.gene023904:CDS |
| ATCTGAAGACTTGGTCTTAA+AGG | 0.176570 | 7.1:+25862529 | MS.gene023904:CDS |
| CTAAAAGGTCATTAATTGTT+AGG | 0.230888 | 7.1:-25860673 | None:intergenic |
| TCACGAGATTGTGCGTCTTT+TGG | 0.252294 | 7.1:+25860760 | MS.gene023904:CDS |
| GGTTTGCTTGGTTCCTCAAT+AGG | 0.253121 | 7.1:-25861351 | None:intergenic |
| ATAACCCATGTTAGTGTAAA+AGG | 0.259909 | 7.1:-25861272 | None:intergenic |
| AAAGACCTTGTCGTTCTTCT+TGG | 0.270351 | 7.1:-25860590 | None:intergenic |
| AAACAAACAAAGGAAGTAAT+GGG | 0.347305 | 7.1:-25860796 | None:intergenic |
| TCGTTCTTCTTGGGATTTGT+GGG | 0.353908 | 7.1:-25860580 | None:intergenic |
| TACCGAGTTGAGCCTTCAAT+TGG | 0.365816 | 7.1:-25862494 | None:intergenic |
| TGTGTAATCAGGAAAGTAAA+TGG | 0.366600 | 7.1:-25861308 | None:intergenic |
| GAAATGACGAATACAACTTC+TGG | 0.370051 | 7.1:-25861372 | None:intergenic |
| TAGAGTCTCCTCCAACTAAA+AGG | 0.373158 | 7.1:-25860688 | None:intergenic |
| CTCTCCAGTGGAAAAGTTCC+AGG | 0.373590 | 7.1:-25862296 | None:intergenic |
| AATTATTCAGACATCTCAAT+AGG | 0.389184 | 7.1:+25860858 | MS.gene023904:CDS |
| TGAATCTGACTACTTCTTCC+AGG | 0.389815 | 7.1:-25860740 | None:intergenic |
| GTCGTTCTTCTTGGGATTTG+TGG | 0.391231 | 7.1:-25860581 | None:intergenic |
| TCGATTATCAGAACCACCTT+TGG | 0.394739 | 7.1:-25861879 | None:intergenic |
| TTGTGAACCTCTAAGTGATA+AGG | 0.402008 | 7.1:+25861571 | MS.gene023904:CDS |
| TAAAAGGTCATTAATTGTTA+GGG | 0.402778 | 7.1:-25860672 | None:intergenic |
| CTCTTGTTTATTCTAGTTGT+AGG | 0.407262 | 7.1:+25860882 | MS.gene023904:CDS |
| AAGACCTTGTCGTTCTTCTT+GGG | 0.408898 | 7.1:-25860589 | None:intergenic |
| GAATAATTGAAGAATGATAC+TGG | 0.409547 | 7.1:-25860843 | None:intergenic |
| ATGTTAGTGTAAAAGGTATC+TGG | 0.415813 | 7.1:-25861265 | None:intergenic |
| ATATCACCTTCTGTGTAATC+AGG | 0.421532 | 7.1:-25861319 | None:intergenic |
| GTGTAATCAGGAAAGTAAAT+GGG | 0.423617 | 7.1:-25861307 | None:intergenic |
| CCTTCGAGTGAAGTTGAAAC+TGG | 0.426012 | 7.1:+25861698 | MS.gene023904:CDS |
| TTACACTAACATGGGTTATG+TGG | 0.430020 | 7.1:+25861276 | MS.gene023904:CDS |
| CTTCGCATTAGCATAACAAT+TGG | 0.432380 | 7.1:-25860975 | None:intergenic |
| TGTGAACCTCTAAGTGATAA+GGG | 0.439039 | 7.1:+25861572 | MS.gene023904:CDS |
| CATTAATTGTTAGGGATTCA+AGG | 0.441406 | 7.1:-25860664 | None:intergenic |
| TGTTTATGGAGGTGCTTCTA+CGG | 0.442354 | 7.1:+25860814 | MS.gene023904:CDS |
| TTTCTTCGTGAAACATTAAC+CGG | 0.444332 | 7.1:+25861028 | MS.gene023904:CDS |
| AGTGAAGCATCAAGAGTAGC+AGG | 0.447937 | 7.1:-25861848 | None:intergenic |
| TTTGTTCATCTTCATCAGCT+GGG | 0.448183 | 7.1:-25862361 | None:intergenic |
| AATACAACTTCTGGTTTGCT+TGG | 0.449113 | 7.1:-25861363 | None:intergenic |
| CTCCTCTTCATGTCTTCACT+AGG | 0.450709 | 7.1:-25861608 | None:intergenic |
| GGTAAAGAGACGAAGCATAA+GGG | 0.458104 | 7.1:+25861719 | MS.gene023904:CDS |
| CTTCCTTTGTTTGTTTATGG+AGG | 0.462255 | 7.1:+25860803 | MS.gene023904:CDS |
| ACAACCTTCAATATGATCTT+CGG | 0.467205 | 7.1:+25862796 | MS.gene023904:CDS |
| TAAGGGGAATCTGAAGAGAT+TGG | 0.467367 | 7.1:+25861736 | MS.gene023904:CDS |
| ATAACCGAAGATCATATTGA+AGG | 0.469011 | 7.1:-25862800 | None:intergenic |
| TGGTAAAGAGACGAAGCATA+AGG | 0.472743 | 7.1:+25861718 | MS.gene023904:CDS |
| AGCCTTTCTGTAGAATTACT+AGG | 0.473672 | 7.1:+25861501 | MS.gene023904:CDS |
| TAAACAAACAAAGGAAGTAA+TGG | 0.475308 | 7.1:-25860797 | None:intergenic |
| TGAAGGTTGTAGACCGCTCT+TGG | 0.478034 | 7.1:-25862783 | None:intergenic |
| CCTCTAAGTGATAAGGGAAA+AGG | 0.486029 | 7.1:+25861578 | MS.gene023904:CDS |
| GTTTATGGAGGTGCTTCTAC+GGG | 0.488444 | 7.1:+25860815 | MS.gene023904:CDS |
| TTGGAGAGATCTGAGGAAAT+CGG | 0.495611 | 7.1:+25861755 | MS.gene023904:CDS |
| CTGATAATCGAAAGCGAAAG+AGG | 0.504756 | 7.1:+25861891 | MS.gene023904:CDS |
| TACTTTCCTGATTACACAGA+AGG | 0.511531 | 7.1:+25861313 | MS.gene023904:CDS |
| ACTAAGATACATGGATAAAG+AGG | 0.514425 | 7.1:+25860553 | None:intergenic |
| ATGAAAATCAGACCAACCTC+AGG | 0.521853 | 7.1:-25861229 | None:intergenic |
| TGTAGAATTACTAGGCAGGT+TGG | 0.526393 | 7.1:+25861509 | MS.gene023904:CDS |
| TTTCTGTAGAATTACTAGGC+AGG | 0.530292 | 7.1:+25861505 | MS.gene023904:CDS |
| AAAGAAGGAAATGTTGGAAG+AGG | 0.533397 | 7.1:+25862256 | MS.gene023904:CDS |
| ACCGAGTTGAGCCTTCAATT+GGG | 0.534244 | 7.1:-25862493 | None:intergenic |
| AACTAGAAATTATATCATCT+AGG | 0.541748 | 7.1:-25860715 | None:intergenic |
| AGAAACAATGCACTGAAAGA+TGG | 0.543949 | 7.1:-25862327 | None:intergenic |
| TCAGGAAAGTAAATGGGGAT+AGG | 0.544906 | 7.1:-25861301 | None:intergenic |
| CTTCAGATTATTTATAACAC+CGG | 0.547371 | 7.1:-25861047 | None:intergenic |
| AAAATTAGCATTGCAGAGAG+TGG | 0.552781 | 7.1:-25862450 | None:intergenic |
| CGTTCTTCTTGGGATTTGTG+GGG | 0.562446 | 7.1:-25860579 | None:intergenic |
| ATCATAGAGATTAAACAGCA+AGG | 0.565860 | 7.1:-25861194 | None:intergenic |
| TCATAGAGATTAAACAGCAA+GGG | 0.568496 | 7.1:-25861193 | None:intergenic |
| CCAGTTTCAACTTCACTCGA+AGG | 0.571131 | 7.1:-25861698 | None:intergenic |
| CTAGGAGCTCAATGTGGTAG+CGG | 0.571359 | 7.1:+25862395 | MS.gene023904:CDS |
| ATATTCGTCAAATCCTATTG+AGG | 0.571651 | 7.1:+25861338 | MS.gene023904:CDS |
| AACAGGAAACATGATCTACT+TGG | 0.572077 | 7.1:+25861117 | MS.gene023904:CDS |
| TGCCTAGTAATTCTACAGAA+AGG | 0.574180 | 7.1:-25861503 | None:intergenic |
| GGTACAATATTTGAAGTGGA+TGG | 0.578879 | 7.1:-25860620 | None:intergenic |
| CTTAAATACATCGTTCAAAG+AGG | 0.584918 | 7.1:-25861663 | None:intergenic |
| ATCAACTATATCTGAAGACT+TGG | 0.588459 | 7.1:+25862520 | MS.gene023904:CDS |
| CGGTGTTATAAATAATCTGA+AGG | 0.588859 | 7.1:+25861048 | MS.gene023904:CDS |
| GAAGAGGAACTACTAATGAA+AGG | 0.592132 | 7.1:+25862272 | MS.gene023904:CDS |
| GAACAAAAGAATGAAGAACT+AGG | 0.593521 | 7.1:+25862377 | MS.gene023904:CDS |
| ATGCTAAAGATGCCTGAGGT+TGG | 0.596497 | 7.1:+25861217 | MS.gene023904:CDS |
| GCTGGAAAAGAAGGAAATGT+TGG | 0.600775 | 7.1:+25862250 | MS.gene023904:CDS |
| TCCCTAGTGAAGACATGAAG+AGG | 0.602962 | 7.1:+25861606 | MS.gene023904:CDS |
| AAATACATCGTTCAAAGAGG+AGG | 0.606106 | 7.1:-25861660 | None:intergenic |
| TCCTCTTCATGTCTTCACTA+GGG | 0.609445 | 7.1:-25861607 | None:intergenic |
| GTAAAGAGACGAAGCATAAG+GGG | 0.615552 | 7.1:+25861720 | MS.gene023904:CDS |
| CTACAACTAGAATAAACAAG+AGG | 0.616716 | 7.1:-25860881 | None:intergenic |
| GCCCAATTGAAGGCTCAACT+CGG | 0.619028 | 7.1:+25862492 | MS.gene023904:CDS |
| GGAAGTAATGGGGAATTCAA+CGG | 0.622314 | 7.1:-25860785 | None:intergenic |
| AAGAGTAGCAGGGTTTCTAG+AGG | 0.622395 | 7.1:-25861837 | None:intergenic |
| TGTAATCAGGAAAGTAAATG+GGG | 0.623436 | 7.1:-25861306 | None:intergenic |
| GCACCTCCATAAACAAACAA+AGG | 0.623874 | 7.1:-25860806 | None:intergenic |
| AGAAAATTGACAAAATCAGA+CGG | 0.625993 | 7.1:-25861010 | None:intergenic |
| GAAGAGATTGGAGAGATCTG+AGG | 0.630497 | 7.1:+25861748 | MS.gene023904:CDS |
| GAACTACTAATGAAAGGACC+TGG | 0.635191 | 7.1:+25862278 | MS.gene023904:CDS |
| TGCAGGTACAATATTTGAAG+TGG | 0.636267 | 7.1:-25860624 | None:intergenic |
| ATGGCTATCAACCTCTCCAG+TGG | 0.639552 | 7.1:-25862308 | None:intergenic |
| GTGAAGCATCAAGAGTAGCA+GGG | 0.645856 | 7.1:-25861847 | None:intergenic |
| TTCAAAGAGGAGGCAATATG+CGG | 0.652269 | 7.1:-25861650 | None:intergenic |
| CAGACTCGAACAAGATACGC+TGG | 0.657694 | 7.1:-25860916 | None:intergenic |
| CTAGTGAAGACATGAAGAGG+AGG | 0.671922 | 7.1:+25861609 | MS.gene023904:CDS |
| AACAAACAAAGGAAGTAATG+GGG | 0.674348 | 7.1:-25860795 | None:intergenic |
| TCTGATAGATCTACCAAGAG+CGG | 0.694150 | 7.1:+25862770 | MS.gene023904:intron |
| TGATATGCTAAAGATGCCTG+AGG | 0.719075 | 7.1:+25861213 | MS.gene023904:CDS |
| GAAGAACTAGGAGCTCAATG+TGG | 0.747887 | 7.1:+25862389 | MS.gene023904:CDS |
| AAATCCCAAGAAGAACGACA+AGG | 0.747956 | 7.1:+25860585 | MS.gene023904:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGCTAATTTTATTTTTAA+GGG | + | chr7.1:25862461-25862480 | MS.gene023904:CDS | 10.0% |
| !!! | CAATGCTAATTTTATTTTTA+AGG | + | chr7.1:25862460-25862479 | MS.gene023904:CDS | 15.0% |
| !! | AACTAGAAATTATATCATCT+AGG | - | chr7.1:25860718-25860737 | None:intergenic | 20.0% |
| !! | AGAAAAATAAAACCAACAAA+AGG | - | chr7.1:25862016-25862035 | None:intergenic | 20.0% |
| !! | TAAAAGGTCATTAATTGTTA+GGG | - | chr7.1:25860675-25860694 | None:intergenic | 20.0% |
| !! | TGTATAAATACTTTGACAAT+GGG | - | chr7.1:25862694-25862713 | None:intergenic | 20.0% |
| !!! | TCACAATATTTTTCAAATAG+TGG | - | chr7.1:25861557-25861576 | None:intergenic | 20.0% |
| ! | AAACAAACAAAGGAAGTAAT+GGG | - | chr7.1:25860799-25860818 | None:intergenic | 25.0% |
| ! | AATTATTCAGACATCTCAAT+AGG | + | chr7.1:25860858-25860877 | MS.gene023904:CDS | 25.0% |
| ! | AATTTCAACATTGTTTAAGC+AGG | + | chr7.1:25862649-25862668 | MS.gene023904:intron | 25.0% |
| ! | AGAAAATTGACAAAATCAGA+CGG | - | chr7.1:25861013-25861032 | None:intergenic | 25.0% |
| ! | AGATCATGTAATGCTTAAAA+TGG | - | chr7.1:25861436-25861455 | None:intergenic | 25.0% |
| ! | CTAAAAGGTCATTAATTGTT+AGG | - | chr7.1:25860676-25860695 | None:intergenic | 25.0% |
| ! | CTGTATAAATACTTTGACAA+TGG | - | chr7.1:25862695-25862714 | None:intergenic | 25.0% |
| ! | CTTCAGATTATTTATAACAC+CGG | - | chr7.1:25861050-25861069 | None:intergenic | 25.0% |
| ! | GAATAATTGAAGAATGATAC+TGG | - | chr7.1:25860846-25860865 | None:intergenic | 25.0% |
| ! | GTAGTTGATTGATAAGATTT+AGG | + | chr7.1:25862135-25862154 | MS.gene023904:intron | 25.0% |
| ! | TAAACAAACAAAGGAAGTAA+TGG | - | chr7.1:25860800-25860819 | None:intergenic | 25.0% |
| !! | ACAATTAATGACCTTTTAGT+TGG | + | chr7.1:25860677-25860696 | MS.gene023904:CDS | 25.0% |
| !! | ATTTTCATCTTGTTAGAGAT+TGG | + | chr7.1:25861149-25861168 | MS.gene023904:CDS | 25.0% |
| !! | TTACTTCCTTTGTTTGTTTA+TGG | + | chr7.1:25860800-25860819 | MS.gene023904:CDS | 25.0% |
| !! | TTTTCATCTTGTTAGAGATT+GGG | + | chr7.1:25861150-25861169 | MS.gene023904:CDS | 25.0% |
| !!! | GATATAATTTCTAGTTTTCC+TGG | + | chr7.1:25860722-25860741 | MS.gene023904:CDS | 25.0% |
| AACAAACAAAGGAAGTAATG+GGG | - | chr7.1:25860798-25860817 | None:intergenic | 30.0% | |
| ACAACCTTCAATATGATCTT+CGG | + | chr7.1:25862796-25862815 | MS.gene023904:CDS | 30.0% | |
| ATAACCCATGTTAGTGTAAA+AGG | - | chr7.1:25861275-25861294 | None:intergenic | 30.0% | |
| ATAACCGAAGATCATATTGA+AGG | - | chr7.1:25862803-25862822 | None:intergenic | 30.0% | |
| ATATTCGTCAAATCCTATTG+AGG | + | chr7.1:25861338-25861357 | MS.gene023904:CDS | 30.0% | |
| ATCAACTATATCTGAAGACT+TGG | + | chr7.1:25862520-25862539 | MS.gene023904:CDS | 30.0% | |
| ATCATAGAGATTAAACAGCA+AGG | - | chr7.1:25861197-25861216 | None:intergenic | 30.0% | |
| CAATAAATAACTCTTCTCAC+AGG | - | chr7.1:25862065-25862084 | None:intergenic | 30.0% | |
| CATTAATTGTTAGGGATTCA+AGG | - | chr7.1:25860667-25860686 | None:intergenic | 30.0% | |
| CTACAACTAGAATAAACAAG+AGG | - | chr7.1:25860884-25860903 | None:intergenic | 30.0% | |
| CTCACAGGAAAAAATGAAAA+TGG | - | chr7.1:25862050-25862069 | None:intergenic | 30.0% | |
| CTCTTTGAACGATGTATTTA+AGG | + | chr7.1:25861664-25861683 | MS.gene023904:CDS | 30.0% | |
| CTTAAATACATCGTTCAAAG+AGG | - | chr7.1:25861666-25861685 | None:intergenic | 30.0% | |
| GAACAAAAGAATGAAGAACT+AGG | + | chr7.1:25862377-25862396 | MS.gene023904:CDS | 30.0% | |
| GCTCAATAAGAATGAACTAT+GGG | - | chr7.1:25862167-25862186 | None:intergenic | 30.0% | |
| GTGTAATCAGGAAAGTAAAT+GGG | - | chr7.1:25861310-25861329 | None:intergenic | 30.0% | |
| TCATAGAGATTAAACAGCAA+GGG | - | chr7.1:25861196-25861215 | None:intergenic | 30.0% | |
| TGCTCAATAAGAATGAACTA+TGG | - | chr7.1:25862168-25862187 | None:intergenic | 30.0% | |
| TGTAATCAGGAAAGTAAATG+GGG | - | chr7.1:25861309-25861328 | None:intergenic | 30.0% | |
| TGTGTAATCAGGAAAGTAAA+TGG | - | chr7.1:25861311-25861330 | None:intergenic | 30.0% | |
| TTTCTTCGTGAAACATTAAC+CGG | + | chr7.1:25861028-25861047 | MS.gene023904:CDS | 30.0% | |
| ! | AGATACCTTTTACACTAACA+TGG | + | chr7.1:25861267-25861286 | MS.gene023904:CDS | 30.0% |
| ! | ATTTGAATGAAGCCTTTTGT+TGG | + | chr7.1:25862001-25862020 | MS.gene023904:intron | 30.0% |
| ! | CTCTTGTTTATTCTAGTTGT+AGG | + | chr7.1:25860882-25860901 | MS.gene023904:CDS | 30.0% |
| ! | GATACCTTTTACACTAACAT+GGG | + | chr7.1:25861268-25861287 | MS.gene023904:CDS | 30.0% |
| ! | GTTTTCAGCACATCAAAAAA+TGG | - | chr7.1:25861939-25861958 | None:intergenic | 30.0% |
| !! | ATATGCTTTTTGATGCATAC+AGG | + | chr7.1:25862213-25862232 | MS.gene023904:intron | 30.0% |
| !! | ATGTTAGTGTAAAAGGTATC+TGG | - | chr7.1:25861268-25861287 | None:intergenic | 30.0% |
| !! | ATTAATGACCTTTTAGTTGG+AGG | + | chr7.1:25860680-25860699 | MS.gene023904:CDS | 30.0% |
| !! | CGGTGTTATAAATAATCTGA+AGG | + | chr7.1:25861048-25861067 | MS.gene023904:CDS | 30.0% |
| !! | TATGCTTTTTGATGCATACA+GGG | + | chr7.1:25862214-25862233 | MS.gene023904:intron | 30.0% |
| !!! | AATTGGCAGCATTTTTTCTA+TGG | - | chr7.1:25860961-25860980 | None:intergenic | 30.0% |
| AAAAAGAAGATACATGGTGG+GGG | + | chr7.1:25861094-25861113 | MS.gene023904:CDS | 35.0% | |
| AAAATTAGCATTGCAGAGAG+TGG | - | chr7.1:25862453-25862472 | None:intergenic | 35.0% | |
| AAACAAAGCCATTCAGACAA+TGG | - | chr7.1:25862097-25862116 | None:intergenic | 35.0% | |
| AAAGAAGGAAATGTTGGAAG+AGG | + | chr7.1:25862256-25862275 | MS.gene023904:CDS | 35.0% | |
| AAATACATCGTTCAAAGAGG+AGG | - | chr7.1:25861663-25861682 | None:intergenic | 35.0% | |
| AACAGGAAACATGATCTACT+TGG | + | chr7.1:25861117-25861136 | MS.gene023904:CDS | 35.0% | |
| ACTTTGACAATGGGAACTTA+AGG | - | chr7.1:25862685-25862704 | None:intergenic | 35.0% | |
| AGAAACAATGCACTGAAAGA+TGG | - | chr7.1:25862330-25862349 | None:intergenic | 35.0% | |
| AGCCTTTCTGTAGAATTACT+AGG | + | chr7.1:25861501-25861520 | MS.gene023904:CDS | 35.0% | |
| ATATCACCTTCTGTGTAATC+AGG | - | chr7.1:25861322-25861341 | None:intergenic | 35.0% | |
| ATCCCGAAAAAGAAGATACA+TGG | + | chr7.1:25861088-25861107 | MS.gene023904:CDS | 35.0% | |
| CGAAAAAGAAGATACATGGT+GGG | + | chr7.1:25861092-25861111 | MS.gene023904:CDS | 35.0% | |
| CTTCGCATTAGCATAACAAT+TGG | - | chr7.1:25860978-25860997 | None:intergenic | 35.0% | |
| GAAAAAGAAGATACATGGTG+GGG | + | chr7.1:25861093-25861112 | MS.gene023904:CDS | 35.0% | |
| GAAATGACGAATACAACTTC+TGG | - | chr7.1:25861375-25861394 | None:intergenic | 35.0% | |
| GAAGAGGAACTACTAATGAA+AGG | + | chr7.1:25862272-25862291 | MS.gene023904:CDS | 35.0% | |
| TACTTTCCTGATTACACAGA+AGG | + | chr7.1:25861313-25861332 | MS.gene023904:CDS | 35.0% | |
| TGCAGGTACAATATTTGAAG+TGG | - | chr7.1:25860627-25860646 | None:intergenic | 35.0% | |
| TGCCTAGTAATTCTACAGAA+AGG | - | chr7.1:25861506-25861525 | None:intergenic | 35.0% | |
| TGTGAACCTCTAAGTGATAA+GGG | + | chr7.1:25861572-25861591 | MS.gene023904:CDS | 35.0% | |
| TTGTGAACCTCTAAGTGATA+AGG | + | chr7.1:25861571-25861590 | MS.gene023904:CDS | 35.0% | |
| TTTCTGTAGAATTACTAGGC+AGG | + | chr7.1:25861505-25861524 | MS.gene023904:CDS | 35.0% | |
| TTTGTTCATCTTCATCAGCT+GGG | - | chr7.1:25862364-25862383 | None:intergenic | 35.0% | |
| ! | CACCATGTATCTTCTTTTTC+GGG | - | chr7.1:25861093-25861112 | None:intergenic | 35.0% |
| ! | CCACCATGTATCTTCTTTTT+CGG | - | chr7.1:25861094-25861113 | None:intergenic | 35.0% |
| ! | CTTCCTTTGTTTGTTTATGG+AGG | + | chr7.1:25860803-25860822 | MS.gene023904:CDS | 35.0% |
| ! | GGTACAATATTTGAAGTGGA+TGG | - | chr7.1:25860623-25860642 | None:intergenic | 35.0% |
| ! | TTACACTAACATGGGTTATG+TGG | + | chr7.1:25861276-25861295 | MS.gene023904:CDS | 35.0% |
| ! | TTTTGTTCATCTTCATCAGC+TGG | - | chr7.1:25862365-25862384 | None:intergenic | 35.0% |
| !! | AATACAACTTCTGGTTTGCT+TGG | - | chr7.1:25861366-25861385 | None:intergenic | 35.0% |
| !! | ATCTGAAGACTTGGTCTTAA+AGG | + | chr7.1:25862529-25862548 | MS.gene023904:CDS | 35.0% |
| !!! | GCTTCACTTTTTGATTCCAA+AGG | + | chr7.1:25861863-25861882 | MS.gene023904:CDS | 35.0% |
| !!! | TCACTTTTTGATTCCAAAGG+TGG | + | chr7.1:25861866-25861885 | MS.gene023904:CDS | 35.0% |
| AAAGACCTTGTCGTTCTTCT+TGG | - | chr7.1:25860593-25860612 | None:intergenic | 40.0% | |
| AAAGCCATTCAGACAATGGT+TGG | - | chr7.1:25862093-25862112 | None:intergenic | 40.0% | |
| AAATCCCAAGAAGAACGACA+AGG | + | chr7.1:25860585-25860604 | MS.gene023904:CDS | 40.0% | |
| AAGACCTTGTCGTTCTTCTT+GGG | - | chr7.1:25860592-25860611 | None:intergenic | 40.0% | |
| AGCGAAAGAGGAAGTAAGTA+TGG | + | chr7.1:25861903-25861922 | MS.gene023904:intron | 40.0% | |
| AGTTCCAACCATTGTCTGAA+TGG | + | chr7.1:25862086-25862105 | MS.gene023904:intron | 40.0% | |
| ATGAAAATCAGACCAACCTC+AGG | - | chr7.1:25861232-25861251 | None:intergenic | 40.0% | |
| CATTGTTTAAGCAGGTTGCA+AGG | + | chr7.1:25862657-25862676 | MS.gene023904:intron | 40.0% | |
| CCGAAAAAGAAGATACATGG+TGG | + | chr7.1:25861091-25861110 | MS.gene023904:CDS | 40.0% | |
| CCTCTAAGTGATAAGGGAAA+AGG | + | chr7.1:25861578-25861597 | MS.gene023904:CDS | 40.0% | |
| CTCGCGTACATGTGTAATAA+AGG | + | chr7.1:25862621-25862640 | MS.gene023904:intron | 40.0% | |
| CTGATAATCGAAAGCGAAAG+AGG | + | chr7.1:25861891-25861910 | MS.gene023904:CDS | 40.0% | |
| CTTTAACAATGACAGCTTCG+CGG | + | chr7.1:25862726-25862745 | MS.gene023904:intron | 40.0% | |
| GAACTACTAATGAAAGGACC+TGG | + | chr7.1:25862278-25862297 | MS.gene023904:CDS | 40.0% | |
| GCACCTCCATAAACAAACAA+AGG | - | chr7.1:25860809-25860828 | None:intergenic | 40.0% | |
| GCTGGAAAAGAAGGAAATGT+TGG | + | chr7.1:25862250-25862269 | MS.gene023904:CDS | 40.0% | |
| GGTAAAGAGACGAAGCATAA+GGG | + | chr7.1:25861719-25861738 | MS.gene023904:CDS | 40.0% | |
| GTAAAGAGACGAAGCATAAG+GGG | + | chr7.1:25861720-25861739 | MS.gene023904:CDS | 40.0% | |
| TAAGGGGAATCTGAAGAGAT+TGG | + | chr7.1:25861736-25861755 | MS.gene023904:CDS | 40.0% | |
| TAGAGTCTCCTCCAACTAAA+AGG | - | chr7.1:25860691-25860710 | None:intergenic | 40.0% | |
| TCAGGAAAGTAAATGGGGAT+AGG | - | chr7.1:25861304-25861323 | None:intergenic | 40.0% | |
| TCCTCTTCATGTCTTCACTA+GGG | - | chr7.1:25861610-25861629 | None:intergenic | 40.0% | |
| TCGATTATCAGAACCACCTT+TGG | - | chr7.1:25861882-25861901 | None:intergenic | 40.0% | |
| TCGTTCTTCTTGGGATTTGT+GGG | - | chr7.1:25860583-25860602 | None:intergenic | 40.0% | |
| TCTGATAGATCTACCAAGAG+CGG | + | chr7.1:25862770-25862789 | MS.gene023904:intron | 40.0% | |
| TGAATCTGACTACTTCTTCC+AGG | - | chr7.1:25860743-25860762 | None:intergenic | 40.0% | |
| TGATATGCTAAAGATGCCTG+AGG | + | chr7.1:25861213-25861232 | MS.gene023904:CDS | 40.0% | |
| TGGTAAAGAGACGAAGCATA+AGG | + | chr7.1:25861718-25861737 | MS.gene023904:CDS | 40.0% | |
| TGTAGAATTACTAGGCAGGT+TGG | + | chr7.1:25861509-25861528 | MS.gene023904:CDS | 40.0% | |
| TTCAAAGAGGAGGCAATATG+CGG | - | chr7.1:25861653-25861672 | None:intergenic | 40.0% | |
| TTGGAGAGATCTGAGGAAAT+CGG | + | chr7.1:25861755-25861774 | MS.gene023904:CDS | 40.0% | |
| ! | CCTTTTCCCTTATCACTTAG+AGG | - | chr7.1:25861581-25861600 | None:intergenic | 40.0% |
| ! | GGAAGTAATGGGGAATTCAA+CGG | - | chr7.1:25860788-25860807 | None:intergenic | 40.0% |
| !! | TGAAAAAGCGCTGGAAAAGA+AGG | + | chr7.1:25862241-25862260 | MS.gene023904:CDS | 40.0% |
| !! | TGTTTATGGAGGTGCTTCTA+CGG | + | chr7.1:25860814-25860833 | MS.gene023904:CDS | 40.0% |
| ATGCTAAAGATGCCTGAGGT+TGG | + | chr7.1:25861217-25861236 | MS.gene023904:CDS | 45.0% | |
| CCAGTTTCAACTTCACTCGA+AGG | - | chr7.1:25861701-25861720 | None:intergenic | 45.0% | |
| CCTTCGAGTGAAGTTGAAAC+TGG | + | chr7.1:25861698-25861717 | MS.gene023904:CDS | 45.0% | |
| CGCGAAGCTGTCATTGTTAA+AGG | - | chr7.1:25862728-25862747 | None:intergenic | 45.0% | |
| CGTTCTTCTTGGGATTTGTG+GGG | - | chr7.1:25860582-25860601 | None:intergenic | 45.0% | |
| CTAGTGAAGACATGAAGAGG+AGG | + | chr7.1:25861609-25861628 | MS.gene023904:CDS | 45.0% | |
| CTCCTCTTCATGTCTTCACT+AGG | - | chr7.1:25861611-25861630 | None:intergenic | 45.0% | |
| GAAGAACTAGGAGCTCAATG+TGG | + | chr7.1:25862389-25862408 | MS.gene023904:CDS | 45.0% | |
| GAAGAGATTGGAGAGATCTG+AGG | + | chr7.1:25861748-25861767 | MS.gene023904:CDS | 45.0% | |
| GGAAAAAGCTGCCCAATTGA+AGG | + | chr7.1:25862482-25862501 | MS.gene023904:CDS | 45.0% | |
| GTCGTTCTTCTTGGGATTTG+TGG | - | chr7.1:25860584-25860603 | None:intergenic | 45.0% | |
| TCCCTAGTGAAGACATGAAG+AGG | + | chr7.1:25861606-25861625 | MS.gene023904:CDS | 45.0% | |
| ! | AAGAGTAGCAGGGTTTCTAG+AGG | - | chr7.1:25861840-25861859 | None:intergenic | 45.0% |
| ! | ACCGAGTTGAGCCTTCAATT+GGG | - | chr7.1:25862496-25862515 | None:intergenic | 45.0% |
| ! | AGTGAAGCATCAAGAGTAGC+AGG | - | chr7.1:25861851-25861870 | None:intergenic | 45.0% |
| ! | CACGAGATTGTGCGTCTTTT+GGG | + | chr7.1:25860761-25860780 | MS.gene023904:CDS | 45.0% |
| ! | GGTTTGCTTGGTTCCTCAAT+AGG | - | chr7.1:25861354-25861373 | None:intergenic | 45.0% |
| ! | GTGAAGCATCAAGAGTAGCA+GGG | - | chr7.1:25861850-25861869 | None:intergenic | 45.0% |
| ! | TACCGAGTTGAGCCTTCAAT+TGG | - | chr7.1:25862497-25862516 | None:intergenic | 45.0% |
| ! | TCACGAGATTGTGCGTCTTT+TGG | + | chr7.1:25860760-25860779 | MS.gene023904:CDS | 45.0% |
| !! | CTGCTGTTTACTTTTGCTGC+AGG | - | chr7.1:25860644-25860663 | None:intergenic | 45.0% |
| !! | GTTTATGGAGGTGCTTCTAC+GGG | + | chr7.1:25860815-25860834 | MS.gene023904:CDS | 45.0% |
| !!! | CTTTTCCAGCGCTTTTTCAG+TGG | - | chr7.1:25862240-25862259 | None:intergenic | 45.0% |
| ATGGCTATCAACCTCTCCAG+TGG | - | chr7.1:25862311-25862330 | None:intergenic | 50.0% | |
| CAGACTCGAACAAGATACGC+TGG | - | chr7.1:25860919-25860938 | None:intergenic | 50.0% | |
| CTAGGAGCTCAATGTGGTAG+CGG | + | chr7.1:25862395-25862414 | MS.gene023904:CDS | 50.0% | |
| CTCTCCAGTGGAAAAGTTCC+AGG | - | chr7.1:25862299-25862318 | None:intergenic | 50.0% | |
| GCCCAATTGAAGGCTCAACT+CGG | + | chr7.1:25862492-25862511 | MS.gene023904:CDS | 50.0% | |
| TGAAGGTTGTAGACCGCTCT+TGG | - | chr7.1:25862786-25862805 | None:intergenic | 50.0% | |
| ! | AAGATACATGGTGGGGGAAC+AGG | + | chr7.1:25861100-25861119 | MS.gene023904:CDS | 50.0% |
| ! | AGGACCTGGAACTTTTCCAC+TGG | + | chr7.1:25862292-25862311 | MS.gene023904:CDS | 50.0% |
| ! | CTGGAACTTTTCCACTGGAG+AGG | + | chr7.1:25862297-25862316 | MS.gene023904:CDS | 50.0% |
| AATGACAGCTTCGCGGAGCT+TGG | + | chr7.1:25862733-25862752 | MS.gene023904:intron | 55.0% | |
| ! | CAGGGCCACTGAAAAAGCGC+TGG | + | chr7.1:25862232-25862251 | MS.gene023904:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 25860563 | 25862825 | 25860563 | ID=MS.gene023904 |
| chr7.1 | mRNA | 25860563 | 25862825 | 25860563 | ID=MS.gene023904.t1;Parent=MS.gene023904 |
| chr7.1 | exon | 25860563 | 25861398 | 25860563 | ID=MS.gene023904.t1.exon1;Parent=MS.gene023904.t1 |
| chr7.1 | CDS | 25860563 | 25861398 | 25860563 | ID=cds.MS.gene023904.t1;Parent=MS.gene023904.t1 |
| chr7.1 | exon | 25861490 | 25861915 | 25861490 | ID=MS.gene023904.t1.exon2;Parent=MS.gene023904.t1 |
| chr7.1 | CDS | 25861490 | 25861915 | 25861490 | ID=cds.MS.gene023904.t1;Parent=MS.gene023904.t1 |
| chr7.1 | exon | 25862235 | 25862550 | 25862235 | ID=MS.gene023904.t1.exon3;Parent=MS.gene023904.t1 |
| chr7.1 | CDS | 25862235 | 25862550 | 25862235 | ID=cds.MS.gene023904.t1;Parent=MS.gene023904.t1 |
| chr7.1 | exon | 25862778 | 25862825 | 25862778 | ID=MS.gene023904.t1.exon4;Parent=MS.gene023904.t1 |
| chr7.1 | CDS | 25862778 | 25862825 | 25862778 | ID=cds.MS.gene023904.t1;Parent=MS.gene023904.t1 |
| Gene Sequence |
| Protein sequence |
