AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene023964

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023964.t1 MTR_7g078800 98.352 182 3 0 1 182 87 268 2.68e-132 371
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene023964.t1 AT4G01310 75.419 179 41 2 1 176 83 261 1.21e-96 281

Find 49 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCTACCCTTTGATTT+TGG 0.123648 7.1:-25338890 None:intergenic
GAATTACAACATTGGTATTA+AGG 0.259700 7.1:+25338676 MS.gene023964:CDS
ACCACAATCTTCTTAACTTT+AGG 0.360933 7.1:-25336897 None:intergenic
TTGAATATCAGCAGCTTTGA+TGG 0.369608 7.1:+25338647 MS.gene023964:CDS
TCAGCTCTGGGAACACAGTT+TGG 0.396548 7.1:-25338700 None:intergenic
TTCCTCGCCCGAGTCTTAAC+AGG 0.398404 7.1:-25337005 None:intergenic
TTGACCTTCCCTGATCTTGA+AGG 0.406375 7.1:-25337039 None:intergenic
CCGTTGCCACCTTCAAGATC+AGG 0.407745 7.1:+25337030 MS.gene023964:CDS
CCTATACCAGATTTCAGCTC+TGG 0.422499 7.1:-25338713 None:intergenic
GTGTTCCCAGAGCTGAAATC+TGG 0.439069 7.1:+25338707 MS.gene023964:CDS
TGCACAAAATGCAAAAGGTT+TGG 0.451207 7.1:+25336941 MS.gene023964:CDS
CTTGATCTAGCACTGATCAC+TGG 0.459647 7.1:+25336975 MS.gene023964:CDS
CTAAGTTGATAACGCGGTCT+AGG 0.460763 7.1:-25338595 None:intergenic
CCTTGAAAATCTCTTGTCCT+AGG 0.465103 7.1:-25338623 None:intergenic
ATCAGCAGCTTTGATGGGAA+TGG 0.466511 7.1:+25338653 MS.gene023964:CDS
TTATCAACTTAGGACTTCCT+AGG 0.473041 7.1:+25338606 MS.gene023964:CDS
CTAGACCGCGTTATCAACTT+AGG 0.474580 7.1:+25338596 MS.gene023964:CDS
CCAGAGCTGAAATCTGGTAT+AGG 0.476827 7.1:+25338713 MS.gene023964:CDS
ATTGTGGTAAACTGTGGTAT+TGG 0.479842 7.1:+25336912 MS.gene023964:CDS
ATCAGGGAAGGTCAACCACT+TGG 0.482119 7.1:+25337047 MS.gene023964:CDS
TCAGCAGCTTTGATGGGAAT+GGG 0.496382 7.1:+25338654 MS.gene023964:CDS
GAAGCTGCACAAAATGCAAA+AGG 0.526930 7.1:+25336936 MS.gene023964:CDS
AACTTCAACTCCCTCTCTGA+AGG 0.527309 7.1:-25338822 None:intergenic
GATCCAAAATCAAAGGGTAG+AGG 0.531994 7.1:+25338887 MS.gene023964:CDS
TTGATCTAGCACTGATCACT+GGG 0.532729 7.1:+25336976 MS.gene023964:CDS
CCTGATCTTGAAGGTGGCAA+CGG 0.533580 7.1:-25337030 None:intergenic
TGAATATCAGCAGCTTTGAT+GGG 0.536920 7.1:+25338648 MS.gene023964:CDS
CGTTGCCACCTTCAAGATCA+GGG 0.545237 7.1:+25337031 MS.gene023964:CDS
GGCAGAGACCTGTTAAGACT+CGG 0.549649 7.1:+25336997 MS.gene023964:CDS
TATAGGTACACCTAGAGGAA+TGG 0.575467 7.1:+25338730 MS.gene023964:CDS
ACCTTCCCTGATCTTGAAGG+TGG 0.584511 7.1:-25337036 None:intergenic
ATGCAGATATCCATTCCTCT+AGG 0.588286 7.1:-25338740 None:intergenic
CTATACCAGATTTCAGCTCT+GGG 0.594159 7.1:-25338712 None:intergenic
TCCTTCTTGATCAGTTCTAG+CGG 0.602168 7.1:-25338771 None:intergenic
ATGGGTATGCCCTTCAGAGA+GGG 0.602286 7.1:+25338812 MS.gene023964:CDS
GCAGAGACCTGTTAAGACTC+GGG 0.607855 7.1:+25336998 MS.gene023964:CDS
AAGAAGATTGTGGTAAACTG+TGG 0.615390 7.1:+25336906 MS.gene023964:CDS
ACTTCAACTCCCTCTCTGAA+GGG 0.615523 7.1:-25338821 None:intergenic
GGGATTGCTGTGACACTCAG+AGG 0.615781 7.1:+25337068 MS.gene023964:CDS
TCAGGGAAGGTCAACCACTT+GGG 0.616213 7.1:+25337048 MS.gene023964:CDS
GCCACCTTCAAGATCAGGGA+AGG 0.616261 7.1:+25337035 MS.gene023964:CDS
GGGAATGGGAATTACAACAT+TGG 0.626171 7.1:+25338668 MS.gene023964:CDS
ACCGCTAGAACTGATCAAGA+AGG 0.627372 7.1:+25338770 MS.gene023964:CDS
GCCTAAAGTTAAGAAGATTG+TGG 0.634345 7.1:+25336896 MS.gene023964:CDS
GACCTGTTAAGACTCGGGCG+AGG 0.646443 7.1:+25337003 MS.gene023964:CDS
CATGGGTATGCCCTTCAGAG+AGG 0.660728 7.1:+25338811 MS.gene023964:CDS
AGTGTCACAGCAATCCCAAG+TGG 0.690222 7.1:-25337062 None:intergenic
TCTGGTATAGGTACACCTAG+AGG 0.713169 7.1:+25338725 MS.gene023964:CDS
GAAGTCCTAAGTTGATAACG+CGG 0.748246 7.1:-25338601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAATAGTATAAAAAA+TGG - chr7.1:25337191-25337210 None:intergenic 10.0%
!! ATTATTCATATTACTTAAAT+AGG - chr7.1:25337512-25337531 None:intergenic 10.0%
!! TACTAAATAGTATAAAAAAT+GGG - chr7.1:25337190-25337209 None:intergenic 10.0%
!! ACAAAATAATATTTGATCAT+TGG - chr7.1:25338057-25338076 None:intergenic 15.0%
!! TAATGCAAAATACTATAATT+TGG - chr7.1:25338302-25338321 None:intergenic 15.0%
!!! ATTCTTATGGTTTTAAAATA+TGG - chr7.1:25338480-25338499 None:intergenic 15.0%
!! GCATGTATAATATATTCTTA+TGG - chr7.1:25338493-25338512 None:intergenic 20.0%
!! GTTAACAAAATATATTCACT+AGG - chr7.1:25337131-25337150 None:intergenic 20.0%
!! TAAAGATGTTCATAAGATAT+AGG + chr7.1:25337784-25337803 MS.gene023964:intron 20.0%
!! TATTTGAATATGTTGTCATT+TGG + chr7.1:25338226-25338245 MS.gene023964:intron 20.0%
!!! TTTAGTATTTAGAACAATGT+CGG + chr7.1:25337203-25337222 MS.gene023964:intron 20.0%
! CAATGTGATCTAAGTTTAAA+TGG - chr7.1:25337758-25337777 None:intergenic 25.0%
! GAATTACAACATTGGTATTA+AGG + chr7.1:25338676-25338695 MS.gene023964:CDS 25.0%
! TAACACAGGATGTTTAATAT+CGG + chr7.1:25338338-25338357 MS.gene023964:intron 25.0%
! TCAAGAAGGACAAAAATTAT+TGG + chr7.1:25338784-25338803 MS.gene023964:CDS 25.0%
! TTCATATTACTTAAATAGGC+CGG - chr7.1:25337508-25337527 None:intergenic 25.0%
!! AACCAATAGGTATTAGATTT+TGG - chr7.1:25338549-25338568 None:intergenic 25.0%
!! ACCAATAGGTATTAGATTTT+GGG - chr7.1:25338548-25338567 None:intergenic 25.0%
!! ATTCTCTTTTATCTTGAGAA+TGG + chr7.1:25338139-25338158 MS.gene023964:intron 25.0%
!! TAAAGCCTATTTAGCTTAAA+AGG + chr7.1:25337440-25337459 MS.gene023964:intron 25.0%
!! TAAGATATAGGCTTTTAAAC+AGG + chr7.1:25337796-25337815 MS.gene023964:intron 25.0%
!!! CATTTTGATCCAAAATCAAA+GGG + chr7.1:25338881-25338900 MS.gene023964:CDS 25.0%
!!! GCTTTTTTCTTAAATAGAGA+AGG + chr7.1:25337404-25337423 MS.gene023964:intron 25.0%
!!! GTAATAGAAAGTGTTTACAT+AGG + chr7.1:25338075-25338094 MS.gene023964:intron 25.0%
!!! TCATTTTGATCCAAAATCAA+AGG + chr7.1:25338880-25338899 MS.gene023964:CDS 25.0%
!!! TTAGATTCTAGTTAATTTGC+TGG + chr7.1:25337246-25337265 MS.gene023964:intron 25.0%
ACCACAATCTTCTTAACTTT+AGG - chr7.1:25336900-25336919 None:intergenic 30.0%
ACCCAAAATCTAATACCTAT+TGG + chr7.1:25338544-25338563 MS.gene023964:intron 30.0%
CAAAATATATTCACTAGGCA+AGG - chr7.1:25337126-25337145 None:intergenic 30.0%
CTCTATTTAAGAAAAAAGCC+TGG - chr7.1:25337403-25337422 None:intergenic 30.0%
TGTGTAGTATAATGCATCTT+TGG + chr7.1:25337974-25337993 MS.gene023964:intron 30.0%
! ATAATCAACACGAGGTTTTT+GGG - chr7.1:25337694-25337713 None:intergenic 30.0%
!! ACAAAAATTATTGGCTCTCA+TGG + chr7.1:25338793-25338812 MS.gene023964:CDS 30.0%
!! ATAGGCTTTAAAAAAAGCCT+AGG - chr7.1:25337430-25337449 None:intergenic 30.0%
!! CAAAAATTATTGGCTCTCAT+GGG + chr7.1:25338794-25338813 MS.gene023964:CDS 30.0%
!!! TAGGTATTAGATTTTGGGTT+CGG - chr7.1:25338543-25338562 None:intergenic 30.0%
!!! TCATTTTACACGCTTTGTTT+TGG - chr7.1:25338120-25338139 None:intergenic 30.0%
AAAAGCCTCTTAAGCCTATT+AGG + chr7.1:25337482-25337501 MS.gene023964:intron 35.0%
AAGAAGATTGTGGTAAACTG+TGG + chr7.1:25336906-25336925 MS.gene023964:CDS 35.0%
ACATCCTGTGTTAGAATATG+AGG - chr7.1:25338331-25338350 None:intergenic 35.0%
ATTGTGGTAAACTGTGGTAT+TGG + chr7.1:25336912-25336931 MS.gene023964:CDS 35.0%
CATAAAAAACCTGGATGTTG+CGG + chr7.1:25338434-25338453 MS.gene023964:intron 35.0%
GAGACATCACATAAAAAACC+TGG + chr7.1:25338425-25338444 MS.gene023964:intron 35.0%
GCCTAAAGTTAAGAAGATTG+TGG + chr7.1:25336896-25336915 MS.gene023964:CDS 35.0%
TCTGTCGAATATCAACCAAT+AGG - chr7.1:25338562-25338581 None:intergenic 35.0%
TGCACAAAATGCAAAAGGTT+TGG + chr7.1:25336941-25336960 MS.gene023964:CDS 35.0%
TTAGCCTCATATTCTAACAC+AGG + chr7.1:25338324-25338343 MS.gene023964:intron 35.0%
TTATCAACTTAGGACTTCCT+AGG + chr7.1:25338606-25338625 MS.gene023964:CDS 35.0%
TTCTTAAATAGAGAAGGCCT+AGG + chr7.1:25337410-25337429 MS.gene023964:intron 35.0%
! ACTTCTTTTTGCGAACTACT+TGG - chr7.1:25338850-25338869 None:intergenic 35.0%
! CTTCTTTTTGCGAACTACTT+GGG - chr7.1:25338849-25338868 None:intergenic 35.0%
! GATAATCAACACGAGGTTTT+TGG - chr7.1:25337695-25337714 None:intergenic 35.0%
! GGATGTTTAATATCGGTTAG+CGG + chr7.1:25338345-25338364 MS.gene023964:intron 35.0%
! TGAATATCAGCAGCTTTGAT+GGG + chr7.1:25338648-25338667 MS.gene023964:CDS 35.0%
! TGGATCACATGTAAGCTTTT+TGG + chr7.1:25337994-25338013 MS.gene023964:intron 35.0%
! TTGAATATCAGCAGCTTTGA+TGG + chr7.1:25338647-25338666 MS.gene023964:CDS 35.0%
! TTTGAGATTGCGGAAAATTG+AGG + chr7.1:25338387-25338406 MS.gene023964:intron 35.0%
!! CTCTTTTGATAATCAACACG+AGG - chr7.1:25337702-25337721 None:intergenic 35.0%
!!! ACATGTAAGCTTTTTGGAGT+TGG + chr7.1:25338000-25338019 MS.gene023964:intron 35.0%
!!! CATGTAAGCTTTTTGGAGTT+GGG + chr7.1:25338001-25338020 MS.gene023964:intron 35.0%
AAATGTCTTGGAGTTAGGGA+TGG - chr7.1:25337936-25337955 None:intergenic 40.0%
AATGTCTTGGAGTTAGGGAT+GGG - chr7.1:25337935-25337954 None:intergenic 40.0%
AGCCAAATGTCTTGGAGTTA+GGG - chr7.1:25337940-25337959 None:intergenic 40.0%
ATCCCTAACTCCAAGACATT+TGG + chr7.1:25337935-25337954 MS.gene023964:intron 40.0%
ATGCAGATATCCATTCCTCT+AGG - chr7.1:25338743-25338762 None:intergenic 40.0%
CAAACAGTAGCCAAATGTCT+TGG - chr7.1:25337948-25337967 None:intergenic 40.0%
CCTTGAAAATCTCTTGTCCT+AGG - chr7.1:25338626-25338645 None:intergenic 40.0%
CGGAAAATTGAGGTCAAACA+CGG + chr7.1:25338397-25338416 MS.gene023964:intron 40.0%
CTAAAAAGTAGGCCTATGAC+AGG + chr7.1:25337860-25337879 MS.gene023964:intron 40.0%
CTATACCAGATTTCAGCTCT+GGG - chr7.1:25338715-25338734 None:intergenic 40.0%
GAAGCTGCACAAAATGCAAA+AGG + chr7.1:25336936-25336955 MS.gene023964:CDS 40.0%
GATCCAAAATCAAAGGGTAG+AGG + chr7.1:25338887-25338906 MS.gene023964:CDS 40.0%
GCTGGTATAGTTAGATGCAT+TGG + chr7.1:25337264-25337283 MS.gene023964:intron 40.0%
GGGAATGGGAATTACAACAT+TGG + chr7.1:25338668-25338687 MS.gene023964:CDS 40.0%
TAGCCAAATGTCTTGGAGTT+AGG - chr7.1:25337941-25337960 None:intergenic 40.0%
TATAGGTACACCTAGAGGAA+TGG + chr7.1:25338730-25338749 MS.gene023964:CDS 40.0%
TTTAAGAAAAAAGCCTGGCC+TGG - chr7.1:25337398-25337417 None:intergenic 40.0%
! CCTAGGACAAGAGATTTTCA+AGG + chr7.1:25338623-25338642 MS.gene023964:CDS 40.0%
! CCTATTTAGCTTAAAAGGCC+AGG + chr7.1:25337445-25337464 MS.gene023964:intron 40.0%
! TCCTTCTTGATCAGTTCTAG+CGG - chr7.1:25338774-25338793 None:intergenic 40.0%
!! CCTGGCCTTTTAAGCTAAAT+AGG - chr7.1:25337448-25337467 None:intergenic 40.0%
!! GAAGTCCTAAGTTGATAACG+CGG - chr7.1:25338604-25338623 None:intergenic 40.0%
!! TCTCCTCTACCCTTTGATTT+TGG - chr7.1:25338893-25338912 None:intergenic 40.0%
!! TTGATCTAGCACTGATCACT+GGG + chr7.1:25336976-25336995 MS.gene023964:CDS 40.0%
!!! ACACGCTTTGTTTTGGTATG+TGG - chr7.1:25338113-25338132 None:intergenic 40.0%
!!! CACGCTTTGTTTTGGTATGT+GGG - chr7.1:25338112-25338131 None:intergenic 40.0%
!!! CTGTCATAGGCCTACTTTTT+AGG - chr7.1:25337862-25337881 None:intergenic 40.0%
AAAATATGGTCTGCAGACCG+TGG - chr7.1:25338466-25338485 None:intergenic 45.0%
AACTTCAACTCCCTCTCTGA+AGG - chr7.1:25338825-25338844 None:intergenic 45.0%
ACCGCTAGAACTGATCAAGA+AGG + chr7.1:25338770-25338789 MS.gene023964:CDS 45.0%
ACTTCAACTCCCTCTCTGAA+GGG - chr7.1:25338824-25338843 None:intergenic 45.0%
AGACTACTCCAAGTAGGGAT+GGG + chr7.1:25337324-25337343 MS.gene023964:intron 45.0%
ATTGAGGTCAAACACGGTTG+TGG + chr7.1:25338403-25338422 MS.gene023964:intron 45.0%
CAAGGAGACTACTCCAAGTA+GGG + chr7.1:25337319-25337338 MS.gene023964:intron 45.0%
CCAGAGCTGAAATCTGGTAT+AGG + chr7.1:25338713-25338732 MS.gene023964:CDS 45.0%
CCTATACCAGATTTCAGCTC+TGG - chr7.1:25338716-25338735 None:intergenic 45.0%
CTAGACCGCGTTATCAACTT+AGG + chr7.1:25338596-25338615 MS.gene023964:CDS 45.0%
CTTAAATAGGCCGGCCTAAT+AGG - chr7.1:25337499-25337518 None:intergenic 45.0%
TATCAGGCTTTCAGAAGGTC+AGG + chr7.1:25337830-25337849 MS.gene023964:intron 45.0%
TCAAGGAGACTACTCCAAGT+AGG + chr7.1:25337318-25337337 MS.gene023964:intron 45.0%
TCTGGTATAGGTACACCTAG+AGG + chr7.1:25338725-25338744 MS.gene023964:CDS 45.0%
TTGACCTTCCCTGATCTTGA+AGG - chr7.1:25337042-25337061 None:intergenic 45.0%
TTGGAGTTAGGGATGGGAAT+AGG - chr7.1:25337929-25337948 None:intergenic 45.0%
! AGGCTTTTAAACAGGCTAGC+AGG + chr7.1:25337804-25337823 MS.gene023964:intron 45.0%
! ATCAGCAGCTTTGATGGGAA+TGG + chr7.1:25338653-25338672 MS.gene023964:CDS 45.0%
! ATGAACTCTGATAAGCGCTG+AGG + chr7.1:25337291-25337310 MS.gene023964:intron 45.0%
! GACCTTCTGAAAGCCTGATA+CGG - chr7.1:25337830-25337849 None:intergenic 45.0%
! TCAGCAGCTTTGATGGGAAT+GGG + chr7.1:25338654-25338673 MS.gene023964:CDS 45.0%
! TTAATATCGGTTAGCGGCTG+TGG + chr7.1:25338351-25338370 MS.gene023964:intron 45.0%
!! CTAAGTTGATAACGCGGTCT+AGG - chr7.1:25338598-25338617 None:intergenic 45.0%
!! CTTCGCGATCTTTGAGATTG+CGG + chr7.1:25338377-25338396 MS.gene023964:intron 45.0%
!! CTTGATCTAGCACTGATCAC+TGG + chr7.1:25336975-25336994 MS.gene023964:CDS 45.0%
!! GGCTTAAGAGGCTTTTTGAG+AGG - chr7.1:25337478-25337497 None:intergenic 45.0%
ACCTTCCCTGATCTTGAAGG+TGG - chr7.1:25337039-25337058 None:intergenic 50.0%
AGCTTAAAAGGCCAGGCCAT+AGG + chr7.1:25337452-25337471 MS.gene023964:intron 50.0%
AGTGTCACAGCAATCCCAAG+TGG - chr7.1:25337065-25337084 None:intergenic 50.0%
ATCAGGGAAGGTCAACCACT+TGG + chr7.1:25337047-25337066 MS.gene023964:CDS 50.0%
ATGGGTATGCCCTTCAGAGA+GGG + chr7.1:25338812-25338831 MS.gene023964:CDS 50.0%
CAGGCTCAGGCCTAAAAAGT+AGG + chr7.1:25337849-25337868 MS.gene023964:intron 50.0%
CCTGATCTTGAAGGTGGCAA+CGG - chr7.1:25337033-25337052 None:intergenic 50.0%
CGTTGCCACCTTCAAGATCA+GGG + chr7.1:25337031-25337050 MS.gene023964:CDS 50.0%
CTCCAAGTAGGGATGGGAAT+AGG + chr7.1:25337330-25337349 MS.gene023964:intron 50.0%
GAGACTACTCCAAGTAGGGA+TGG + chr7.1:25337323-25337342 MS.gene023964:intron 50.0%
GCAGAGACCTGTTAAGACTC+GGG + chr7.1:25336998-25337017 MS.gene023964:CDS 50.0%
GCCTCTTAAGCCTATTAGGC+CGG + chr7.1:25337486-25337505 MS.gene023964:intron 50.0%
GGCAGAGACCTGTTAAGACT+CGG + chr7.1:25336997-25337016 MS.gene023964:CDS 50.0%
GTGTTCCCAGAGCTGAAATC+TGG + chr7.1:25338707-25338726 MS.gene023964:CDS 50.0%
GTTAGGGATGGGAATAGGCT+AGG - chr7.1:25337924-25337943 None:intergenic 50.0%
TCAGGGAAGGTCAACCACTT+GGG + chr7.1:25337048-25337067 MS.gene023964:CDS 50.0%
!! GAGGCTTTTTGAGAGGCCTA+TGG - chr7.1:25337471-25337490 None:intergenic 50.0%
!! TCAGCTCTGGGAACACAGTT+TGG - chr7.1:25338703-25338722 None:intergenic 50.0%
!! TTTTTGAGAGGCCTATGGCC+TGG - chr7.1:25337466-25337485 None:intergenic 50.0%
AGGCCTTGCAAAGCCTAGCT+CGG + chr7.1:25337898-25337917 MS.gene023964:intron 55.0%
CATGGGTATGCCCTTCAGAG+AGG + chr7.1:25338811-25338830 MS.gene023964:CDS 55.0%
CCGTTGCCACCTTCAAGATC+AGG + chr7.1:25337030-25337049 MS.gene023964:CDS 55.0%
GCCACCTTCAAGATCAGGGA+AGG + chr7.1:25337035-25337054 MS.gene023964:CDS 55.0%
GCCGGCCTAATAGGCTTAAG+AGG - chr7.1:25337490-25337509 None:intergenic 55.0%
GCTTTCAGAAGGTCAGGCTC+AGG + chr7.1:25337836-25337855 MS.gene023964:intron 55.0%
GGCCGTATCAGGCTTTCAGA+AGG + chr7.1:25337825-25337844 MS.gene023964:intron 55.0%
GGCCTATTCCCATCCCTACT+TGG - chr7.1:25337335-25337354 None:intergenic 55.0%
GGGATTGCTGTGACACTCAG+AGG + chr7.1:25337068-25337087 MS.gene023964:CDS 55.0%
TTCCTCGCCCGAGTCTTAAC+AGG - chr7.1:25337008-25337027 None:intergenic 55.0%
!! ATAAGCGCTGAGGCGCTTCA+AGG + chr7.1:25337301-25337320 MS.gene023964:intron 55.0%
AATAGGCCAGACCGGCCTAC+AGG + chr7.1:25337347-25337366 MS.gene023964:intron 60.0%
ACAGGCTAGCAGGCCGTATC+AGG + chr7.1:25337814-25337833 MS.gene023964:intron 60.0%
AGGCCGAGCTAGGCTTTGCA+AGG - chr7.1:25337904-25337923 None:intergenic 60.0%
ATAGGCCAGACCGGCCTACA+GGG + chr7.1:25337348-25337367 MS.gene023964:intron 60.0%
GACCTGTTAAGACTCGGGCG+AGG + chr7.1:25337003-25337022 MS.gene023964:CDS 60.0%
GGAATAGGCTAGGCCGAGCT+AGG - chr7.1:25337914-25337933 None:intergenic 60.0%
GGCTTTGCAAGGCCTAAGCC+TGG - chr7.1:25337893-25337912 None:intergenic 60.0%
GGGATGGGAATAGGCCAGAC+CGG + chr7.1:25337339-25337358 MS.gene023964:intron 60.0%
CAAGGCCTAAGCCTGGCCTG+CGG - chr7.1:25337886-25337905 None:intergenic 65.0%
CCTACGGCCTAGCCTACGAC+AGG + chr7.1:25337372-25337391 MS.gene023964:intron 65.0%
CCTGTCGTAGGCTAGGCCGT+AGG - chr7.1:25337375-25337394 None:intergenic 65.0%
GGATGTTGCGGCCACAGCCA+CGG + chr7.1:25338446-25338465 MS.gene023964:intron 65.0%
GTAGGCCTATGACAGGCCGC+AGG + chr7.1:25337867-25337886 MS.gene023964:intron 65.0%
TAGGCCAGACCGGCCTACAG+GGG + chr7.1:25337349-25337368 MS.gene023964:intron 65.0%
TGGCTGTGGCCGCAACATCC+AGG - chr7.1:25338446-25338465 None:intergenic 65.0%
TGGTCTGCAGACCGTGGCTG+TGG - chr7.1:25338460-25338479 None:intergenic 65.0%
ACAGGCCGCAGGCCAGGCTT+AGG + chr7.1:25337878-25337897 MS.gene023964:intron 70.0%
AGCCTACGACAGGCCAGGCC+AGG + chr7.1:25337382-25337401 MS.gene023964:intron 70.0%
AGCCTGGCCTGGCCTGTCGT+AGG - chr7.1:25337387-25337406 None:intergenic 70.0%
CCTATGACAGGCCGCAGGCC+AGG + chr7.1:25337872-25337891 MS.gene023964:intron 70.0%
CCTGGCCTGCGGCCTGTCAT+AGG - chr7.1:25337875-25337894 None:intergenic 70.0%
GACCGGCCTACAGGGGCCTA+CGG + chr7.1:25337356-25337375 MS.gene023964:intron 70.0%
GCTAGGCCGTAGGCCCCTGT+AGG - chr7.1:25337365-25337384 None:intergenic 70.0%
GGCCTAGCCTACGACAGGCC+AGG + chr7.1:25337377-25337396 MS.gene023964:intron 70.0%
GGCCTGGCCTGTCGTAGGCT+AGG - chr7.1:25337382-25337401 None:intergenic 70.0%
TAGGCCCCTGTAGGCCGGTC+TGG - chr7.1:25337356-25337375 None:intergenic 70.0%
GGCCGTAGGCCCCTGTAGGC+CGG - chr7.1:25337361-25337380 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 25336894 25338928 25336894 ID=MS.gene023964
chr7.1 mRNA 25336894 25338928 25336894 ID=MS.gene023964.t1;Parent=MS.gene023964
chr7.1 exon 25336894 25337094 25336894 ID=MS.gene023964.t1.exon1;Parent=MS.gene023964.t1
chr7.1 CDS 25336894 25337094 25336894 ID=cds.MS.gene023964.t1;Parent=MS.gene023964.t1
chr7.1 exon 25338581 25338928 25338581 ID=MS.gene023964.t1.exon2;Parent=MS.gene023964.t1
chr7.1 CDS 25338581 25338928 25338581 ID=cds.MS.gene023964.t1;Parent=MS.gene023964.t1
Gene Sequence

>MS.gene023964

GTGCCTAAAGTTAAGAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATACTTGATCTAGCACTGATCACTGGGCAGAGACCTGTTAAGACTCGGGCGAGGAATTCCGTTGCCACCTTCAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAGTGAGTGCTTCGTATTCAATTGATATTGCCTTGCCTAGTGAATATATTTTGTTAACATGAGATCATTATTTAGTTTAATTGCTTGACATTTTCCCATTTTTTATACTATTTAGTATTTAGAACAATGTCGGTATCATGAATAATGATATTGTTAGATTCTAGTTAATTTGCTGGTATAGTTAGATGCATTGGTGTAATGAACTCTGATAAGCGCTGAGGCGCTTCAAGGAGACTACTCCAAGTAGGGATGGGAATAGGCCAGACCGGCCTACAGGGGCCTACGGCCTAGCCTACGACAGGCCAGGCCAGGCTTTTTTCTTAAATAGAGAAGGCCTAGGCTTTTTTTAAAGCCTATTTAGCTTAAAAGGCCAGGCCATAGGCCTCTCAAAAAGCCTCTTAAGCCTATTAGGCCGGCCTATTTAAGTAATATGAATAATATTATTTATTATTATATTATATTTTGTACTTTGAATTAAAATATAAATTTGTAAACTTGTTCAATAATTTAAGCTTTATTAGTATACATTAGTTTTTTGCATATATAAATGTATTATTATAAACTAGAATAGAAATATGATACAATATATAGTCGAATTCCCAAAAACCTCGTGTTGATTATCAAAAGAGAGTTTAATCTAATTGAACTATTAGTTTGTTAGTCCATTTAAACTTAGATCACATTGCTTATTTAAAGATGTTCATAAGATATAGGCTTTTAAACAGGCTAGCAGGCCGTATCAGGCTTTCAGAAGGTCAGGCTCAGGCCTAAAAAGTAGGCCTATGACAGGCCGCAGGCCAGGCTTAGGCCTTGCAAAGCCTAGCTCGGCCTAGCCTATTCCCATCCCTAACTCCAAGACATTTGGCTACTGTTTGTTAACTTGTGTAGTATAATGCATCTTTGGATCACATGTAAGCTTTTTGGAGTTGGGAATATTCTCTGTTGACATAATATATGCTTTCCAATGATCAAATATTATTTTGTAATAGAAAGTGTTTACATAGGAAGCATTATTTCCCACATACCAAAACAAAGCGTGTAAAATGATTCTCTTTTATCTTGAGAATGGTACTTCAGAAGTCAAAAGTTTAGTTAATTTGAATTTTCTTCTGCGTATGTGTTTTTCAACAATTTATTTGAATATGTTGTCATTTGGAACTTTTTAAAAAAAATATTGTTAAGTATATTATAGTTCTACAGCGAGTACCAAATTATAGTATTTTGCATTACTTTAGCCTCATATTCTAACACAGGATGTTTAATATCGGTTAGCGGCTGTGGTTTCTTCGCGATCTTTGAGATTGCGGAAAATTGAGGTCAAACACGGTTGTGGAGACATCACATAAAAAACCTGGATGTTGCGGCCACAGCCACGGTCTGCAGACCATATTTTAAAACCATAAGAATATATTATACATGCTTTGCAACTTTCTTTGTTTTTATATAGCCGAACCCAAAATCTAATACCTATTGGTTGATATTCGACAGATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTTTGAATATCAGCAGCTTTGATGGGAATGGGAATTACAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTATAGGTACACCTAGAGGAATGGATATCTGCATCTCAACAACCGCTAGAACTGATCAAGAAGGACAAAAATTATTGGCTCTCATGGGTATGCCCTTCAGAGAGGGAGTTGAAGTTACCCAAGTAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATCCAAAATCAAAGGGTAGAGGAGACAGAGCAAAGAAGTAA
Protein sequence

>MS.gene023964.t1

VPKVKKIVVNCGIGEAAQNAKGLDAAILDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNISSFDGNGNYNIGIKDQTVFPELKSGIGTPRGMDICISTTARTDQEGQKLLALMGMPFREGVEVTQVVRKKKLKSHHFDPKSKGRGDRAKK