AlfalfaGEDB | MS.gene044695

M. sativa cultivar XinJiangDaYe / MS.gene044695

KEGG: K02899
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01016.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044695.t1	AFK41007.1	94.3	193	11	0	1	193	1	193	2.70E-91	344.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044695.t1	P82190	63.3	188	64	3	5	192	7	189	2.7e-55	216.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044695.t1	I3SL65	94.3	193	11	0	1	193	1	193	1.9e-91	344.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene023964	MS.gene044695	PPI
MS.gene023966	MS.gene044695	PPI
MS.gene044695	MS.gene058660	PPI
MS.gene044695	MS.gene85449	PPI
MS.gene36648	MS.gene044695	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044695.t1	MTR_3g020680	95.855	193	8	0	1	193	1	193	8.93e-123	345
MS.gene044695.t1	MTR_3g014010	54.082	98	44	1	51	147	35	132	5.88e-26	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044695.t1	AT5G40950	63.131	198	66	4	1	193	3	198	6.65e-73	219
MS.gene044695.t1	AT5G15220	56.989	93	39	1	56	147	45	137	3.29e-24	93.6
MS.gene044695.t1	AT5G15220	56.989	93	39	1	56	147	45	137	3.29e-24	93.6
MS.gene044695.t1	AT2G16930	65.278	72	25	0	56	127	45	116	4.17e-24	93.2
MS.gene044695.t1	AT2G16930	65.278	72	25	0	56	127	45	116	4.17e-24	93.2
MS.gene044695.t1	AT2G16930	65.278	72	25	0	56	127	45	116	4.17e-24	93.2
MS.gene044695.t1	AT2G16930	65.278	72	25	0	56	127	45	116	4.17e-24	93.2

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Find 57 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGTAGGAATTGGCA+AGG	0.623999	3.4:-12913463	MS.gene044695:CDS
AAGAATGGTCGTGACTCGGC+TGG	0.507588	3.4:-12914887	MS.gene044695:CDS
AAGATGAAGATGAAGATGAG+GGG	0.642716	3.4:+12915026	None:intergenic
AATCCGGAATGCTCACAAGA+AGG	0.555772	3.4:-12914924	MS.gene044695:CDS
AATCTATAGCTATCGGGGTT+CGG	0.454206	3.4:+12913252	None:intergenic
AATGCTCACAAGAAGGGAGC+AGG	0.545655	3.4:-12914917	MS.gene044695:CDS
ACAATCTGGATTCTCTATTG+CGG	0.641419	3.4:+12913128	None:intergenic
ACCCCGATAGCTATAGATTA+AGG	0.337827	3.4:-12913248	MS.gene044695:CDS
ACGGAAGCGAGCATTAGCTG+TGG	0.714472	3.4:+12913159	None:intergenic
AGATGAAGATGAAGATGAGG+GGG	0.548767	3.4:+12915027	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTAGGGTTAACTACA+TGG	+	chr3.4:12914022-12914041	None:intergenic	30.0%
ATAAAAATTTGGCACAACTG+AGG	-	chr3.4:12913984-12914003	MS.gene044695:intron	30.0%
CAAATACAGACTCAATGTAA+AGG	+	chr3.4:12914550-12914569	None:intergenic	30.0%
CTGAATATAGAACAAACATG+AGG	+	chr3.4:12914374-12914393	None:intergenic	30.0%
CTTCCTTAATCTATAGCTAT+CGG	+	chr3.4:12914968-12914987	None:intergenic	30.0%
TTACATTGAGTCTGTATTTG+TGG	-	chr3.4:12914550-12914569	MS.gene044695:intron	30.0%
TTACTTCTCTATGCATTTCT+AGG	+	chr3.4:12914229-12914248	None:intergenic	30.0%
TTCCTTAATCTATAGCTATC+GGG	+	chr3.4:12914967-12914986	None:intergenic	30.0%
AAAGAATGTAGGAATTGGCA+AGG	-	chr3.4:12914747-12914766	MS.gene044695:intron	35.0%
AAGATGAAGATGAAGATGAG+GGG	+	chr3.4:12913187-12913206	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	12913125	12915107	12913125	ID=MS.gene044695
chr3.4	mRNA	12913125	12915107	12913125	ID=MS.gene044695.t1;Parent=MS.gene044695
chr3.4	exon	12914808	12915107	12914808	ID=MS.gene044695.t1.exon1;Parent=MS.gene044695.t1
chr3.4	CDS	12914808	12915107	12914808	ID=cds.MS.gene044695.t1;Parent=MS.gene044695.t1
chr3.4	exon	12913395	12913496	12913395	ID=MS.gene044695.t1.exon2;Parent=MS.gene044695.t1
chr3.4	CDS	12913395	12913496	12913395	ID=cds.MS.gene044695.t1;Parent=MS.gene044695.t1
chr3.4	exon	12913125	12913304	12913125	ID=MS.gene044695.t1.exon3;Parent=MS.gene044695.t1
chr3.4	CDS	12913125	12913304	12913125	ID=cds.MS.gene044695.t1;Parent=MS.gene044695.t1

Gene Sequence

>MS.gene044695

ATGGCTGTATGCATGGGTTTCAACATAGCAACAGCATTCAAATCCCTCACTCTCTCTTCCCCCTCATCTTCATCTTCATCTTCCTTTTTATCAGGTTCCACCACTCTTCGTATGACTCCATCAGTATCTCTCCCTCGAATTCATCATCGGTCAGCACTGATAATCCGGAATGCTCACAAGAAGGGAGCAGGAAGTACCAAGAATGGTCGTGACTCGGCTGGAAGGCGTCTCGGTGTTAAAGTTTATGGTGACCAGGTCGCTAAACCTGGTTCCATTATCGTTCGTCAGCGTGGAACCAAGGTGTGTCTTTCATTCTCTCACTCTTCTATATTAAATTTTTAAATTTTAGTAAGAAAAGAATTGTGGTATGTTAGTTAATTTAACTGTCCTGAATTGTTATATGAATTTTGAAATTATGGCCATGTTAATTGTCATTAAGAATTATACGTTTGGTGAATTGAAAAGAGAAAAAAAAATGAAATTGGTGTAGTTTCTGTTCAATTAGAGCCTATAGAAAACATAAATTATGTCTGGAAGGCCAATCTCAACGACCAATGTTGATGTTGCTAGACCAGACACTTTTACTCGGTTCGAAAACAGGACCTCACACGGTTGTGCGTGTGTGAGTTTTAGGTGGTGTTTGTCACTTCGTCAATAAACAAAACAAAACAAAAAAGTAAGCTTTTTAAAAAGTATATTTGTATAATTGAAACTTGACGCGTTATTATTTGAACTTCACAGTTTGTGCAAATCTCGCGGATTAAGGGTGCTGTTAGGCACACACAATATGGTAAATACGTGCATTTCCCCTCTGAATAGGTAGATATAGCCTGTTTGCTATGAAATCTACTGTCAGTGAATAAAAATTTGGCACAACTGAGGCACAATTTGGATCCATGTAGTTAACCCTAAGATTTGATTGTTATGATTTGGCACAATTTGGATTATCTTTTATTTTATGTGAATTTCCCCTTTTTTAAGTTTATGGATTTGTAAGTCAACTTAAACGATAGAGCTTCACTTAACTCAACTTATACTGCAAGTTATTTTGTTTTTAACTCAATTGTTGCAAGATTCTTTTGATACTTTTGCAATGTATAGCCTAGAAATGCATAGAGAAGTAAGAACGAGTAAGTTCGTTTGAATAGTTGAGTTGTATTTTGTAATTGACAATATTTGCATTGATACCGATACTTTTGATCAGTATGGTAAATCTGTAAACTATTCCATCACTTTTAAAGAACTTCCTCATGTTTGTTCTATATTCAGAGTAATAAATGCTACTGTAGAAGTAATGAGGGTCCATGTTTTAAATCAAAGTCACCGTTAGTGGTGATCCTTGATATTATAGAAAATTACGGAAAAATGCGGTTAATGTAGACACTATTTGCTTTTGCGATGCCATTGGTGAGAGTTCAAGAACCTTTACATTGAGTCTGTATTTGTGGTTGGGGTTGGGGTCCGCAATTTAAAATCATGATAAGGGTGTTATAGGCGCACACAATATAGTAAATACGTGCCTTTGTCGAACCAGTTTTTAAGATATTGTTGAATCTTTATTACCTTACTGTTCCTTTTAGTTCTGATTATTTTTCTTTGCAAAACTTGTAGTTTCACGCAGGAAAGAATGTAGGAATTGGCAAGGACCATACCATTTTCTCCCTAATTGATGGAGTTGTTAAATTTGAGAAATATGGACCTGACAAGAAAAAGGTAATAAATAGTCTTTCAGTGCTTGCTGTGTATGACCTGCAATCCTAGAGTACAAATTAACTAGCTAATAAAGTTGTAATAATATTACAGATCAGTGTTTACCCACGAGAAGAACCAGTTCCGAACCCCGATAGCTATAGATTAAGGAAGATAGAGTACTTCAGGATGAGACGTGAACGCAAAAAGGCTGCTCAAGAAAGAAGAGCTTTTCAACCACAGCTAATGCTCGCTTCCGTTGATGATGCCGCAATAGAGAATCCAGATTGTTGA

Protein sequence

>MS.gene044695.t1

MAVCMGFNIATAFKSLTLSSPSSSSSSSFLSGSTTLRMTPSVSLPRIHHRSALIIRNAHKKGAGSTKNGRDSAGRRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGVVKFEKYGPDKKKISVYPREEPVPNPDSYRLRKIEYFRMRRERKKAAQERRAFQPQLMLASVDDAAIENPDC