Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044695.t1 | AFK41007.1 | 94.3 | 193 | 11 | 0 | 1 | 193 | 1 | 193 | 2.70E-91 | 344.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044695.t1 | P82190 | 63.3 | 188 | 64 | 3 | 5 | 192 | 7 | 189 | 2.7e-55 | 216.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044695.t1 | I3SL65 | 94.3 | 193 | 11 | 0 | 1 | 193 | 1 | 193 | 1.9e-91 | 344.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044695 | MS.gene058660 | PPI |
| MS.gene023964 | MS.gene044695 | PPI |
| MS.gene023966 | MS.gene044695 | PPI |
| MS.gene36648 | MS.gene044695 | PPI |
| MS.gene044695 | MS.gene85449 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044695.t1 | MTR_3g020680 | 95.855 | 193 | 8 | 0 | 1 | 193 | 1 | 193 | 8.93e-123 | 345 |
| MS.gene044695.t1 | MTR_3g014010 | 54.082 | 98 | 44 | 1 | 51 | 147 | 35 | 132 | 5.88e-26 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044695.t1 | AT5G40950 | 63.131 | 198 | 66 | 4 | 1 | 193 | 3 | 198 | 6.65e-73 | 219 |
| MS.gene044695.t1 | AT5G15220 | 56.989 | 93 | 39 | 1 | 56 | 147 | 45 | 137 | 3.29e-24 | 93.6 |
| MS.gene044695.t1 | AT5G15220 | 56.989 | 93 | 39 | 1 | 56 | 147 | 45 | 137 | 3.29e-24 | 93.6 |
| MS.gene044695.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 56 | 127 | 45 | 116 | 4.17e-24 | 93.2 |
| MS.gene044695.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 56 | 127 | 45 | 116 | 4.17e-24 | 93.2 |
| MS.gene044695.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 56 | 127 | 45 | 116 | 4.17e-24 | 93.2 |
| MS.gene044695.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 56 | 127 | 45 | 116 | 4.17e-24 | 93.2 |
Find 57 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTCGGTGTTAAAGTTTA+TGG | 0.177876 | 3.4:-12914860 | MS.gene044695:CDS |
| ATTTAACAACTCCATCAATT+AGG | 0.209145 | 3.4:+12913424 | None:intergenic |
| GTTGTTAAATTTGAGAAATA+TGG | 0.286354 | 3.4:-12913411 | MS.gene044695:CDS |
| TCCATCAATTAGGGAGAAAA+TGG | 0.286561 | 3.4:+12913434 | None:intergenic |
| TCCACGCTGACGAACGATAA+TGG | 0.287537 | 3.4:+12914814 | None:intergenic |
| CTCCCTTCTTGTGAGCATTC+CGG | 0.294541 | 3.4:+12914921 | None:intergenic |
| AGCCGAGTCACGACCATTCT+TGG | 0.305650 | 3.4:+12914889 | None:intergenic |
| TTTAACAACTCCATCAATTA+GGG | 0.327228 | 3.4:+12913425 | None:intergenic |
| TAAGGAAGATAGAGTACTTC+AGG | 0.334007 | 3.4:-12913230 | MS.gene044695:CDS |
| ACCCCGATAGCTATAGATTA+AGG | 0.337827 | 3.4:-12913248 | MS.gene044695:CDS |
| AGTGGTGGAACCTGATAAAA+AGG | 0.340910 | 3.4:+12915003 | None:intergenic |
| ATATGGACCTGACAAGAAAA+AGG | 0.362247 | 3.4:-12913394 | MS.gene044695:intron |
| GATGAGACGTGAACGCAAAA+AGG | 0.391120 | 3.4:-12913208 | MS.gene044695:CDS |
| TAGCTATCGGGGTTCGGAAC+TGG | 0.398737 | 3.4:+12913258 | None:intergenic |
| TTCCTTAATCTATAGCTATC+GGG | 0.403484 | 3.4:+12913246 | None:intergenic |
| TTCCACCATGGCTGTATGCA+TGG | 0.414968 | 3.4:-12915092 | None:intergenic |
| ATCGGTCAGCACTGATAATC+CGG | 0.421185 | 3.4:-12914940 | MS.gene044695:CDS |
| GAAGTATAGAATCAACAATC+TGG | 0.424433 | 3.4:+12913114 | None:intergenic |
| GCAGGAAAGAATGTAGGAAT+TGG | 0.450063 | 3.4:-12913468 | MS.gene044695:CDS |
| CTTCCTTAATCTATAGCTAT+CGG | 0.452680 | 3.4:+12913245 | None:intergenic |
| AATCTATAGCTATCGGGGTT+CGG | 0.454206 | 3.4:+12913252 | None:intergenic |
| GACTCGGCTGGAAGGCGTCT+CGG | 0.459266 | 3.4:-12914875 | MS.gene044695:CDS |
| TCCACCATGGCTGTATGCAT+GGG | 0.465483 | 3.4:-12915091 | None:intergenic |
| TTCGGAACTGGTTCTTCTCG+TGG | 0.494529 | 3.4:+12913270 | None:intergenic |
| AAGAATGGTCGTGACTCGGC+TGG | 0.507588 | 3.4:-12914887 | MS.gene044695:CDS |
| TCCATTATCGTTCGTCAGCG+TGG | 0.519050 | 3.4:-12914815 | MS.gene044695:CDS |
| GGAAGATGAAGATGAAGATG+AGG | 0.519197 | 3.4:+12915024 | None:intergenic |
| CTCTATTGCGGCATCATCAA+CGG | 0.525471 | 3.4:+12913140 | None:intergenic |
| GGTGACCAGGTCGCTAAACC+TGG | 0.525958 | 3.4:-12914839 | MS.gene044695:CDS |
| GAAGATGAAGATGAAGATGA+GGG | 0.529006 | 3.4:+12915025 | None:intergenic |
| TCGGAACTGGTTCTTCTCGT+GGG | 0.545521 | 3.4:+12913271 | None:intergenic |
| AATGCTCACAAGAAGGGAGC+AGG | 0.545655 | 3.4:-12914917 | MS.gene044695:CDS |
| GCTGACCGATGATGAATTCG+AGG | 0.548418 | 3.4:+12914953 | None:intergenic |
| AGATGAAGATGAAGATGAGG+GGG | 0.548767 | 3.4:+12915027 | None:intergenic |
| AATCCGGAATGCTCACAAGA+AGG | 0.555772 | 3.4:-12914924 | MS.gene044695:CDS |
| TACCAAGAATGGTCGTGACT+CGG | 0.555979 | 3.4:-12914891 | MS.gene044695:CDS |
| CGTTCGTCAGCGTGGAACCA+AGG | 0.557359 | 3.4:-12914807 | MS.gene044695:intron |
| TGGAACCAGGTTTAGCGACC+TGG | 0.559263 | 3.4:+12914834 | None:intergenic |
| GGAGCAGGAAGTACCAAGAA+TGG | 0.569534 | 3.4:-12914902 | MS.gene044695:CDS |
| ATCCGGAATGCTCACAAGAA+GGG | 0.574035 | 3.4:-12914923 | MS.gene044695:CDS |
| TTTCACGCAGGAAAGAATGT+AGG | 0.575613 | 3.4:-12913474 | MS.gene044695:CDS |
| CTCTCCCTCGAATTCATCAT+CGG | 0.577761 | 3.4:-12914958 | MS.gene044695:CDS |
| ATGGTCGTGACTCGGCTGGA+AGG | 0.580035 | 3.4:-12914883 | MS.gene044695:CDS |
| TCCTTAATCTATAGCTATCG+GGG | 0.582549 | 3.4:+12913247 | None:intergenic |
| TGTTAAAGTTTATGGTGACC+AGG | 0.587699 | 3.4:-12914852 | MS.gene044695:CDS |
| AAAGAATGTAGGAATTGGCA+AGG | 0.623999 | 3.4:-12913463 | MS.gene044695:CDS |
| CAATTAGGGAGAAAATGGTA+TGG | 0.636675 | 3.4:+12913439 | None:intergenic |
| ACAATCTGGATTCTCTATTG+CGG | 0.641419 | 3.4:+12913128 | None:intergenic |
| AAGATGAAGATGAAGATGAG+GGG | 0.642716 | 3.4:+12915026 | None:intergenic |
| TGATGGAGTCATACGAAGAG+TGG | 0.649417 | 3.4:+12914985 | None:intergenic |
| CAAAACTTGTAGTTTCACGC+AGG | 0.653399 | 3.4:-12913486 | MS.gene044695:intron |
| ATTCGAGGGAGAGATACTGA+TGG | 0.655380 | 3.4:+12914968 | None:intergenic |
| TGGAGTCATACGAAGAGTGG+TGG | 0.657319 | 3.4:+12914988 | None:intergenic |
| TGACGAACGATAATGGAACC+AGG | 0.673053 | 3.4:+12914821 | None:intergenic |
| GAAACCCATGCATACAGCCA+TGG | 0.673634 | 3.4:+12915087 | None:intergenic |
| CTGACCGATGATGAATTCGA+GGG | 0.678497 | 3.4:+12914954 | None:intergenic |
| ACGGAAGCGAGCATTAGCTG+TGG | 0.714472 | 3.4:+12913159 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATGAATTTTGAAATTA+TGG | - | chr3.4:12913521-12913540 | MS.gene044695:intron | 10.0% |
| !! | AAATCCATAAACTTAAAAAA+GGG | + | chr3.4:12914097-12914116 | None:intergenic | 15.0% |
| !! | AAGAGAAAAAAAAATGAAAT+TGG | - | chr3.4:12913587-12913606 | MS.gene044695:intron | 15.0% |
| !! | CTTGATATTATAGAAAATTA+CGG | - | chr3.4:12914463-12914482 | MS.gene044695:intron | 15.0% |
| !!! | ACATAATTTATGTTTTCTAT+AGG | + | chr3.4:12913635-12913654 | None:intergenic | 15.0% |
| !! | AAGATTTGATTGTTATGATT+TGG | - | chr3.4:12914035-12914054 | MS.gene044695:intron | 20.0% |
| !! | AATCATAACAATCAAATCTT+AGG | + | chr3.4:12914035-12914054 | None:intergenic | 20.0% |
| !! | AATCCATAAACTTAAAAAAG+GGG | + | chr3.4:12914096-12914115 | None:intergenic | 20.0% |
| !! | ATCATAACAATCAAATCTTA+GGG | + | chr3.4:12914034-12914053 | None:intergenic | 20.0% |
| !! | ATTCTTAATGACAATTAACA+TGG | + | chr3.4:12913547-12913566 | None:intergenic | 20.0% |
| !! | CAAAATTCATATAACAATTC+AGG | + | chr3.4:12913515-12913534 | None:intergenic | 20.0% |
| !! | CAAATCCATAAACTTAAAAA+AGG | + | chr3.4:12914098-12914117 | None:intergenic | 20.0% |
| !! | GAAAAATAATCAGAACTAAA+AGG | + | chr3.4:12914700-12914719 | None:intergenic | 20.0% |
| !! | GTTGTTAAATTTGAGAAATA+TGG | - | chr3.4:12914799-12914818 | MS.gene044695:intron | 20.0% |
| !! | TAGAAAACATAAATTATGTC+TGG | - | chr3.4:12913636-12913655 | MS.gene044695:intron | 20.0% |
| !! | TTCAACAATATCTTAAAAAC+TGG | + | chr3.4:12914658-12914677 | None:intergenic | 20.0% |
| !!! | CGTAATTTTCTATAATATCA+AGG | + | chr3.4:12914465-12914484 | None:intergenic | 20.0% |
| !!! | CTTATCATGATTTTAAATTG+CGG | + | chr3.4:12914589-12914608 | None:intergenic | 20.0% |
| !!! | GCAATTTAAAATCATGATAA+GGG | - | chr3.4:12914588-12914607 | MS.gene044695:intron | 20.0% |
| !!! | TTTTAGTAAGAAAAGAATTG+TGG | - | chr3.4:12913468-12913487 | MS.gene044695:CDS | 20.0% |
| ! | AAACATAAATTATGTCTGGA+AGG | - | chr3.4:12913640-12913659 | MS.gene044695:intron | 25.0% |
| ! | ACTGTCAGTGAATAAAAATT+TGG | - | chr3.4:12913973-12913992 | MS.gene044695:intron | 25.0% |
| ! | ATTTAACAACTCCATCAATT+AGG | + | chr3.4:12914789-12914808 | None:intergenic | 25.0% |
| ! | GTCATTAAGAATTATACGTT+TGG | - | chr3.4:12913555-12913574 | MS.gene044695:intron | 25.0% |
| ! | TAGAAAATTACGGAAAAATG+CGG | - | chr3.4:12914473-12914492 | MS.gene044695:intron | 25.0% |
| ! | TTTAACAACTCCATCAATTA+GGG | + | chr3.4:12914788-12914807 | None:intergenic | 25.0% |
| !! | CGCAATTTAAAATCATGATA+AGG | - | chr3.4:12914587-12914606 | MS.gene044695:intron | 25.0% |
| !! | TTTATTACCTTTTTCTTGTC+AGG | + | chr3.4:12914826-12914845 | None:intergenic | 25.0% |
| !!! | TTTCCCCTTTTTTAAGTTTA+TGG | - | chr3.4:12914090-12914109 | MS.gene044695:intron | 25.0% |
| AAATCTTAGGGTTAACTACA+TGG | + | chr3.4:12914022-12914041 | None:intergenic | 30.0% | |
| ATAAAAATTTGGCACAACTG+AGG | - | chr3.4:12913984-12914003 | MS.gene044695:intron | 30.0% | |
| CAAATACAGACTCAATGTAA+AGG | + | chr3.4:12914550-12914569 | None:intergenic | 30.0% | |
| CTGAATATAGAACAAACATG+AGG | + | chr3.4:12914374-12914393 | None:intergenic | 30.0% | |
| CTTCCTTAATCTATAGCTAT+CGG | + | chr3.4:12914968-12914987 | None:intergenic | 30.0% | |
| TTACATTGAGTCTGTATTTG+TGG | - | chr3.4:12914550-12914569 | MS.gene044695:intron | 30.0% | |
| TTACTTCTCTATGCATTTCT+AGG | + | chr3.4:12914229-12914248 | None:intergenic | 30.0% | |
| TTCCTTAATCTATAGCTATC+GGG | + | chr3.4:12914967-12914986 | None:intergenic | 30.0% | |
| ! | ACCATACTGATCAAAAGTAT+CGG | + | chr3.4:12914315-12914334 | None:intergenic | 30.0% |
| ! | AGGAAGTTCTTTAAAAGTGA+TGG | + | chr3.4:12914354-12914373 | None:intergenic | 30.0% |
| ! | GGTGACTTTGATTTAAAACA+TGG | + | chr3.4:12914430-12914449 | None:intergenic | 30.0% |
| ! | TCTTCATCTTCCTTTTTATC+AGG | - | chr3.4:12913197-12913216 | MS.gene044695:CDS | 30.0% |
| ! | TGTTATGATTTGGCACAATT+TGG | - | chr3.4:12914045-12914064 | MS.gene044695:intron | 30.0% |
| !! | AATCATGATAAGGGTGTTAT+AGG | - | chr3.4:12914597-12914616 | MS.gene044695:intron | 30.0% |
| !! | AGCTAGTTAATTTGTACTCT+AGG | + | chr3.4:12914884-12914903 | None:intergenic | 30.0% |
| AAAGAATGTAGGAATTGGCA+AGG | - | chr3.4:12914747-12914766 | MS.gene044695:intron | 35.0% | |
| AAGATGAAGATGAAGATGAG+GGG | + | chr3.4:12913187-12913206 | None:intergenic | 35.0% | |
| ACAATCTGGATTCTCTATTG+CGG | + | chr3.4:12915085-12915104 | None:intergenic | 35.0% | |
| ATATCAAGGATCACCACTAA+CGG | + | chr3.4:12914451-12914470 | None:intergenic | 35.0% | |
| ATATGGACCTGACAAGAAAA+AGG | - | chr3.4:12914816-12914835 | MS.gene044695:CDS | 35.0% | |
| ATGCTACTGTAGAAGTAATG+AGG | - | chr3.4:12914402-12914421 | MS.gene044695:intron | 35.0% | |
| ATTGAGTCTGTATTTGTGGT+TGG | - | chr3.4:12914554-12914573 | MS.gene044695:intron | 35.0% | |
| CAATTAGGGAGAAAATGGTA+TGG | + | chr3.4:12914774-12914793 | None:intergenic | 35.0% | |
| CAGAACTAAAAGGAACAGTA+AGG | + | chr3.4:12914690-12914709 | None:intergenic | 35.0% | |
| CAGTAGATTTCATAGCAAAC+AGG | + | chr3.4:12913957-12913976 | None:intergenic | 35.0% | |
| CTATATCTACCTATTCAGAG+GGG | + | chr3.4:12913934-12913953 | None:intergenic | 35.0% | |
| GAAGATGAAGATGAAGATGA+GGG | + | chr3.4:12913188-12913207 | None:intergenic | 35.0% | |
| GCTATATCTACCTATTCAGA+GGG | + | chr3.4:12913935-12913954 | None:intergenic | 35.0% | |
| TAAATCAAAGTCACCGTTAG+TGG | - | chr3.4:12914435-12914454 | MS.gene044695:intron | 35.0% | |
| TCCATCAATTAGGGAGAAAA+TGG | + | chr3.4:12914779-12914798 | None:intergenic | 35.0% | |
| TCCTTAATCTATAGCTATCG+GGG | + | chr3.4:12914966-12914985 | None:intergenic | 35.0% | |
| TGCTACTGTAGAAGTAATGA+GGG | - | chr3.4:12914403-12914422 | MS.gene044695:intron | 35.0% | |
| TGTTAAAGTTTATGGTGACC+AGG | - | chr3.4:12913358-12913377 | MS.gene044695:intron | 35.0% | |
| TTGAGTCTGTATTTGTGGTT+GGG | - | chr3.4:12914555-12914574 | MS.gene044695:intron | 35.0% | |
| ! | ACCATTTTCTCCCTAATTGA+TGG | - | chr3.4:12914775-12914794 | MS.gene044695:intron | 35.0% |
| ! | ACCGATACTTTTGATCAGTA+TGG | - | chr3.4:12914311-12914330 | MS.gene044695:intron | 35.0% |
| ! | TAAGGAAGATAGAGTACTTC+AGG | - | chr3.4:12914980-12914999 | MS.gene044695:CDS | 35.0% |
| !! | AATTTGTACTCTAGGATTGC+AGG | + | chr3.4:12914876-12914895 | None:intergenic | 35.0% |
| !! | CTTAAAAACTGGTTCGACAA+AGG | + | chr3.4:12914647-12914666 | None:intergenic | 35.0% |
| AATCTATAGCTATCGGGGTT+CGG | + | chr3.4:12914961-12914980 | None:intergenic | 40.0% | |
| ACCCCGATAGCTATAGATTA+AGG | - | chr3.4:12914962-12914981 | MS.gene044695:CDS | 40.0% | |
| AGAGAATGAAAGACACACCT+TGG | + | chr3.4:12913423-12913442 | None:intergenic | 40.0% | |
| AGATGAAGATGAAGATGAGG+GGG | + | chr3.4:12913186-12913205 | None:intergenic | 40.0% | |
| CAAAACTTGTAGTTTCACGC+AGG | - | chr3.4:12914724-12914743 | MS.gene044695:intron | 40.0% | |
| GCAGGAAAGAATGTAGGAAT+TGG | - | chr3.4:12914742-12914761 | MS.gene044695:intron | 40.0% | |
| GGAAGATGAAGATGAAGATG+AGG | + | chr3.4:12913189-12913208 | None:intergenic | 40.0% | |
| GGCTATATCTACCTATTCAG+AGG | + | chr3.4:12913936-12913955 | None:intergenic | 40.0% | |
| TCAACATTGGTCGTTGAGAT+TGG | + | chr3.4:12913666-12913685 | None:intergenic | 40.0% | |
| TGAGTCTGTATTTGTGGTTG+GGG | - | chr3.4:12914556-12914575 | MS.gene044695:intron | 40.0% | |
| TGGTCTAGCAACATCAACAT+TGG | + | chr3.4:12913679-12913698 | None:intergenic | 40.0% | |
| TTTCACGCAGGAAAGAATGT+AGG | - | chr3.4:12914736-12914755 | MS.gene044695:intron | 40.0% | |
| ! | AGTGGTGGAACCTGATAAAA+AGG | + | chr3.4:12913210-12913229 | None:intergenic | 40.0% |
| ! | CTAGACCAGACACTTTTACT+CGG | - | chr3.4:12913691-12913710 | MS.gene044695:intron | 40.0% |
| !! | ATTTGCTTTTGCGATGCCAT+TGG | - | chr3.4:12914510-12914529 | MS.gene044695:intron | 40.0% |
| !! | CGTCTCGGTGTTAAAGTTTA+TGG | - | chr3.4:12913350-12913369 | MS.gene044695:intron | 40.0% |
| !! | CTTTTACTCGGTTCGAAAAC+AGG | - | chr3.4:12913703-12913722 | MS.gene044695:intron | 40.0% |
| AATCCGGAATGCTCACAAGA+AGG | - | chr3.4:12913286-12913305 | MS.gene044695:intron | 45.0% | |
| ATCCGGAATGCTCACAAGAA+GGG | - | chr3.4:12913287-12913306 | MS.gene044695:intron | 45.0% | |
| ATTCGAGGGAGAGATACTGA+TGG | + | chr3.4:12913245-12913264 | None:intergenic | 45.0% | |
| CACAGTTTGTGCAAATCTCG+CGG | - | chr3.4:12913861-12913880 | MS.gene044695:intron | 45.0% | |
| CTCTATTGCGGCATCATCAA+CGG | + | chr3.4:12915073-12915092 | None:intergenic | 45.0% | |
| CTCTCCCTCGAATTCATCAT+CGG | - | chr3.4:12913252-12913271 | MS.gene044695:CDS | 45.0% | |
| CTGACCGATGATGAATTCGA+GGG | + | chr3.4:12913259-12913278 | None:intergenic | 45.0% | |
| CTGTATTTGTGGTTGGGGTT+GGG | - | chr3.4:12914561-12914580 | MS.gene044695:intron | 45.0% | |
| GATGAGACGTGAACGCAAAA+AGG | - | chr3.4:12915002-12915021 | MS.gene044695:CDS | 45.0% | |
| GCTGTTAGGCACACACAATA+TGG | - | chr3.4:12913893-12913912 | MS.gene044695:intron | 45.0% | |
| GGTTCTTGAACTCTCACCAA+TGG | + | chr3.4:12914529-12914548 | None:intergenic | 45.0% | |
| TACCAAGAATGGTCGTGACT+CGG | - | chr3.4:12913319-12913338 | MS.gene044695:intron | 45.0% | |
| TCTGTATTTGTGGTTGGGGT+TGG | - | chr3.4:12914560-12914579 | MS.gene044695:intron | 45.0% | |
| TGATGGAGTCATACGAAGAG+TGG | + | chr3.4:12913228-12913247 | None:intergenic | 45.0% | |
| TGTATTTGTGGTTGGGGTTG+GGG | - | chr3.4:12914562-12914581 | MS.gene044695:intron | 45.0% | |
| TTCGAAAACAGGACCTCACA+CGG | - | chr3.4:12913714-12913733 | MS.gene044695:intron | 45.0% | |
| ! | GTGCAAATCTCGCGGATTAA+GGG | - | chr3.4:12913869-12913888 | MS.gene044695:intron | 45.0% |
| ! | GTTGTGCGTGTGTGAGTTTT+AGG | - | chr3.4:12913736-12913755 | MS.gene044695:intron | 45.0% |
| ! | TGTGCAAATCTCGCGGATTA+AGG | - | chr3.4:12913868-12913887 | MS.gene044695:intron | 45.0% |
| !! | ATCGGTCAGCACTGATAATC+CGG | - | chr3.4:12913270-12913289 | MS.gene044695:CDS | 45.0% |
| !! | TCGAACCGAGTAAAAGTGTC+TGG | + | chr3.4:12913699-12913718 | None:intergenic | 45.0% |
| !! | TGACGAACGATAATGGAACC+AGG | + | chr3.4:12913392-12913411 | None:intergenic | 45.0% |
| AATGCTCACAAGAAGGGAGC+AGG | - | chr3.4:12913293-12913312 | MS.gene044695:intron | 50.0% | |
| CGTGCATTTCCCCTCTGAAT+AGG | - | chr3.4:12913922-12913941 | MS.gene044695:intron | 50.0% | |
| CTCCCTTCTTGTGAGCATTC+CGG | + | chr3.4:12913292-12913311 | None:intergenic | 50.0% | |
| GCTGACCGATGATGAATTCG+AGG | + | chr3.4:12913260-12913279 | None:intergenic | 50.0% | |
| GGCACAACTGAGGCACAATT+TGG | - | chr3.4:12913994-12914013 | MS.gene044695:intron | 50.0% | |
| TCCACGCTGACGAACGATAA+TGG | + | chr3.4:12913399-12913418 | None:intergenic | 50.0% | |
| TCCATTATCGTTCGTCAGCG+TGG | - | chr3.4:12913395-12913414 | MS.gene044695:CDS | 50.0% | |
| TGGAGTCATACGAAGAGTGG+TGG | + | chr3.4:12913225-12913244 | None:intergenic | 50.0% | |
| ! | TCGGAACTGGTTCTTCTCGT+GGG | + | chr3.4:12914942-12914961 | None:intergenic | 50.0% |
| ! | TTCGGAACTGGTTCTTCTCG+TGG | + | chr3.4:12914943-12914962 | None:intergenic | 50.0% |
| !! | GGAGCAGGAAGTACCAAGAA+TGG | - | chr3.4:12913308-12913327 | MS.gene044695:intron | 50.0% |
| !!! | GTGCGTGTGTGAGTTTTAGG+TGG | - | chr3.4:12913739-12913758 | MS.gene044695:intron | 50.0% |
| ACGGAAGCGAGCATTAGCTG+TGG | + | chr3.4:12915054-12915073 | None:intergenic | 55.0% | |
| AGCCGAGTCACGACCATTCT+TGG | + | chr3.4:12913324-12913343 | None:intergenic | 55.0% | |
| ATGAGGGGGAAGAGAGAGTG+AGG | + | chr3.4:12913172-12913191 | None:intergenic | 55.0% | |
| TAGCTATCGGGGTTCGGAAC+TGG | + | chr3.4:12914955-12914974 | None:intergenic | 55.0% | |
| TGAGGGGGAAGAGAGAGTGA+GGG | + | chr3.4:12913171-12913190 | None:intergenic | 55.0% | |
| TGGAACCAGGTTTAGCGACC+TGG | + | chr3.4:12913379-12913398 | None:intergenic | 55.0% | |
| ! | AAGAATGGTCGTGACTCGGC+TGG | - | chr3.4:12913323-12913342 | MS.gene044695:intron | 55.0% |
| !! | CGCGGATTAAGGGTGCTGTT+AGG | - | chr3.4:12913879-12913898 | MS.gene044695:intron | 55.0% |
| CACACACGCACAACCGTGTG+AGG | + | chr3.4:12913730-12913749 | None:intergenic | 60.0% | |
| CGTTCGTCAGCGTGGAACCA+AGG | - | chr3.4:12913403-12913422 | MS.gene044695:CDS | 60.0% | |
| GGTGACCAGGTCGCTAAACC+TGG | - | chr3.4:12913371-12913390 | MS.gene044695:intron | 60.0% | |
| ! | ATGGTCGTGACTCGGCTGGA+AGG | - | chr3.4:12913327-12913346 | MS.gene044695:intron | 60.0% |
| !! | GACTCGGCTGGAAGGCGTCT+CGG | - | chr3.4:12913335-12913354 | MS.gene044695:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12913125 | 12915107 | 12913125 | ID=MS.gene044695 |
| chr3.4 | mRNA | 12913125 | 12915107 | 12913125 | ID=MS.gene044695.t1;Parent=MS.gene044695 |
| chr3.4 | exon | 12914808 | 12915107 | 12914808 | ID=MS.gene044695.t1.exon1;Parent=MS.gene044695.t1 |
| chr3.4 | CDS | 12914808 | 12915107 | 12914808 | ID=cds.MS.gene044695.t1;Parent=MS.gene044695.t1 |
| chr3.4 | exon | 12913395 | 12913496 | 12913395 | ID=MS.gene044695.t1.exon2;Parent=MS.gene044695.t1 |
| chr3.4 | CDS | 12913395 | 12913496 | 12913395 | ID=cds.MS.gene044695.t1;Parent=MS.gene044695.t1 |
| chr3.4 | exon | 12913125 | 12913304 | 12913125 | ID=MS.gene044695.t1.exon3;Parent=MS.gene044695.t1 |
| chr3.4 | CDS | 12913125 | 12913304 | 12913125 | ID=cds.MS.gene044695.t1;Parent=MS.gene044695.t1 |
| Gene Sequence |
| Protein sequence |
