Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039830.t1 | AFK41007.1 | 94.9 | 156 | 8 | 0 | 1 | 156 | 38 | 193 | 2.30E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039830.t1 | P82190 | 75.0 | 140 | 32 | 1 | 16 | 155 | 53 | 189 | 1.0e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039830.t1 | G7IW75 | 94.9 | 156 | 8 | 0 | 1 | 156 | 38 | 193 | 1.7e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36648 | MS.gene039830 | PPI |
| MS.gene039830 | MS.gene023966 | PPI |
| MS.gene039830 | MS.gene023964 | PPI |
| MS.gene039830 | MS.gene85449 | PPI |
| MS.gene039830 | MS.gene058660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039830.t1 | MTR_3g020680 | 94.872 | 156 | 8 | 0 | 1 | 156 | 38 | 193 | 1.13e-108 | 307 |
| MS.gene039830.t1 | MTR_3g014010 | 54.082 | 98 | 44 | 1 | 14 | 110 | 35 | 132 | 8.43e-26 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039830.t1 | AT5G40950 | 69.375 | 160 | 41 | 4 | 4 | 156 | 40 | 198 | 5.45e-70 | 210 |
| MS.gene039830.t1 | AT5G15220 | 56.989 | 93 | 39 | 1 | 19 | 110 | 45 | 137 | 4.01e-24 | 92.0 |
| MS.gene039830.t1 | AT5G15220 | 56.989 | 93 | 39 | 1 | 19 | 110 | 45 | 137 | 4.01e-24 | 92.0 |
| MS.gene039830.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
| MS.gene039830.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
| MS.gene039830.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
| MS.gene039830.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
Find 0 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAATAAAATGAAAT+TGG | - | 24248:1719-1738 | MS.gene039830:CDS | 10.0% |
| !! | GAAAGAAAAAATAAAAAAAA+GGG | - | 24248:3648-3667 | MS.gene039830:intron | 10.0% |
| !! | TGAAAGAAAAAATAAAAAAA+AGG | - | 24248:3647-3666 | MS.gene039830:intron | 10.0% |
| !!! | TTATATGAATTTTGAAATTA+TGG | - | 24248:1656-1675 | MS.gene039830:CDS | 10.0% |
| !! | AAATCCATAAACTTAAAAAA+GGG | + | 24248:2655-2674 | MS.gene039830:intergenic | 15.0% |
| !! | AAGAAAAAAAAAACAAAGAA+AGG | + | 24248:3218-3237 | MS.gene039830:intergenic | 15.0% |
| !! | AGAAAAAAAAAACAAAGAAA+GGG | + | 24248:3217-3236 | MS.gene039830:intergenic | 15.0% |
| !! | TTCATTATTATTTAGACATT+TGG | + | 24248:2034-2053 | MS.gene039830:intergenic | 15.0% |
| !! | AAGATTTGATTGTTATGATT+TGG | - | 24248:2593-2612 | MS.gene039830:intron | 20.0% |
| !! | AATAACAAATTTAGAGAGAA+AGG | + | 24248:3427-3446 | MS.gene039830:intergenic | 20.0% |
| !! | AATCCATAAACTTAAAAAAG+GGG | + | 24248:2654-2673 | MS.gene039830:intergenic | 20.0% |
| !! | ATAACAAATTTAGAGAGAAA+GGG | + | 24248:3426-3445 | MS.gene039830:intergenic | 20.0% |
| !! | CAAAATTCATATAACAATTC+AGG | + | 24248:1650-1669 | MS.gene039830:intergenic | 20.0% |
| !! | CAAATCCATAAACTTAAAAA+AGG | + | 24248:2656-2675 | MS.gene039830:intergenic | 20.0% |
| !! | CTTGATATTGTAGAAAATTA+CGG | - | 24248:3857-3876 | MS.gene039830:intron | 20.0% |
| !! | GAAAAATAATCAGAACTAAA+AGG | + | 24248:4094-4113 | MS.gene039830:intergenic | 20.0% |
| !! | GTTGTAAAATTTGAGAAATA+TGG | - | 24248:4193-4212 | MS.gene039830:intron | 20.0% |
| !! | TTCAACAATATCTTAAAAAC+TGG | + | 24248:4052-4071 | MS.gene039830:intergenic | 20.0% |
| !!! | AATTTGTTATTTGCATTTAC+AGG | - | 24248:3436-3455 | MS.gene039830:intron | 20.0% |
| !!! | CAAAAAAAAAGTGAAGTTTT+TGG | - | 24248:3621-3640 | MS.gene039830:intron | 20.0% |
| !!! | CTTATCATGATTTTAAATTG+CGG | + | 24248:3983-4002 | MS.gene039830:intergenic | 20.0% |
| !!! | GCAATTTAAAATCATGATAA+GGG | - | 24248:3982-4001 | MS.gene039830:intron | 20.0% |
| !!! | GTAATTTTCTACAATATCAA+GGG | + | 24248:3858-3877 | MS.gene039830:intergenic | 20.0% |
| !!! | TTTTAGTAAGAAAAGAATTG+TGG | - | 24248:1603-1622 | MS.gene039830:intron | 20.0% |
| ! | ACTGTCAGTGAATAAAAATT+TGG | - | 24248:2519-2538 | MS.gene039830:intron | 25.0% |
| ! | ATAAAAAAAAGGGATTGAAG+TGG | - | 24248:3658-3677 | MS.gene039830:intron | 25.0% |
| ! | ATCGTATTAGTTATTTGCAT+TGG | + | 24248:3546-3565 | MS.gene039830:intergenic | 25.0% |
| ! | CAATCAAAAATTCATACAGA+AGG | + | 24248:2381-2400 | MS.gene039830:intergenic | 25.0% |
| ! | TATAAAGTAATGATACGAAG+AGG | + | 24248:2239-2258 | MS.gene039830:intergenic | 25.0% |
| ! | TATGTCACACATGTAAAATA+CGG | - | 24248:3059-3078 | MS.gene039830:intron | 25.0% |
| !! | ATTTTACAACTCCATCAATT+AGG | + | 24248:4183-4202 | MS.gene039830:intergenic | 25.0% |
| !! | CGCAATTTAAAATCATGATA+AGG | - | 24248:3981-4000 | MS.gene039830:intron | 25.0% |
| !! | CGTAATTTTCTACAATATCA+AGG | + | 24248:3859-3878 | MS.gene039830:intergenic | 25.0% |
| !! | TACAAGAAAAGTGAAGTTTT+TGG | - | 24248:3590-3609 | MS.gene039830:intron | 25.0% |
| !! | TTTATTACCTTTTTCTTGTC+AGG | + | 24248:4220-4239 | MS.gene039830:intergenic | 25.0% |
| !! | TTTTACAACTCCATCAATTA+GGG | + | 24248:4182-4201 | MS.gene039830:intergenic | 25.0% |
| !!! | ATGATTAGTCTAGTAATTGT+TGG | - | 24248:2056-2075 | MS.gene039830:intron | 25.0% |
| !!! | TTTCCCCTTTTTTAAGTTTA+TGG | - | 24248:2648-2667 | MS.gene039830:intron | 25.0% |
| AAACAAAACAGAACAGAACT+AGG | + | 24248:1991-2010 | MS.gene03983:intergenic | 30.0% | |
| AAATCTTATCTCAGTACACA+GGG | + | 24248:2580-2599 | MS.gene03983:intergenic | 30.0% | |
| AAGAAGAAGAAGAAAAGAGA+AGG | - | 24248:3684-3703 | MS.gene039830:intron | 30.0% | |
| AAGAAGAAGAAGAAAAGAGA+AGG | + | 24248:3703-3684 | MS.gene039830:intergenic | 30.0% | |
| ATAAAAATTTGGCACAACTG+AGG | - | 24248:2530-2549 | MS.gene039830:intron | 30.0% | |
| CTGAATATAGAACAAACATG+AGG | + | 24248:2932-2951 | MS.gene039830:intergenic | 30.0% | |
| CTTCCTTAATCTATAGCTAT+CGG | + | 24248:4362-4381 | MS.gene039830:intergenic | 30.0% | |
| GTCAGTAAGAACTATACTTT+GGG | - | 24248:1690-1709 | MS.gene039830:CDS | 30.0% | |
| GTGTAGTTTCTGTTCAATTA+GGG | - | 24248:1741-1760 | MS.gene039830:intron | 30.0% | |
| GTTCTTACTGACAATTAACA+TGG | + | 24248:1682-1701 | MS.gene039830:intergenic | 30.0% | |
| TAATACGATTATGCTACCTT+GGG | - | 24248:3557-3576 | MS.gene039830:intron | 30.0% | |
| TACAAGAAAAGTGAAGTTTG+TGG | - | 24248:3297-3316 | MS.gene039830:intron | 30.0% | |
| TGGCAGCAATGATAAAAATT+AGG | + | 24248:2116-2135 | MS.gene039830:intergenic | 30.0% | |
| TGTCAGTAAGAACTATACTT+TGG | - | 24248:1689-1708 | MS.gene039830:CDS | 30.0% | |
| TTACTTCTCTATGCATTTCT+AGG | + | 24248:2787-2806 | MS.gene039830:intergenic | 30.0% | |
| TTCCTTAATCTATAGCTATC+GGG | + | 24248:4361-4380 | MS.gene039830:intergenic | 30.0% | |
| ! | ACCATACTGATCAAAAGTAT+CGG | + | 24248:2873-2892 | MS.gene039830:intergenic | 30.0% |
| ! | AGGAAGTTCTTTAAAAGTGA+TGG | + | 24248:2912-2931 | MS.gene039830:intergenic | 30.0% |
| ! | CAACAGCAATTTTCATATCA+AGG | + | 24248:3023-3042 | MS.gene039830:intergenic | 30.0% |
| ! | GGTGACTTTGATTTAAAACA+TGG | + | 24248:2988-3007 | MS.gene039830:intergenic | 30.0% |
| ! | TGTTATGATTTGGCACAATT+TGG | - | 24248:2603-2622 | MS.gene039830:intron | 30.0% |
| !! | AACTTCACTTTTCTTGTATG+TGG | + | 24248:3588-3607 | MS.gene039830:intergenic | 30.0% |
| !! | AATCATGATAAGGGTGTTAT+AGG | - | 24248:3991-4010 | MS.gene039830:intron | 30.0% |
| !! | AGCTAGTTAATTTGTACTCT+AGG | + | 24248:4278-4297 | MS.gene039830:intergenic | 30.0% |
| AACAAAGAAAGGGATTGAAG+TGG | + | 24248:3207-3226 | MS.gene03983:intergenic | 35.0% | |
| AATGTAAGAGTGGAGGTTTA+TGG | - | 24248:2345-2364 | MS.gene039830:intron | 35.0% | |
| ACAATCTGGATTCTCTATTG+CGG | + | 24248:4479-4498 | MS.gene039830:intergenic | 35.0% | |
| AGAGAATGAAAGAAACACCT+TGG | + | 24248:1558-1577 | MS.gene039830:intergenic | 35.0% | |
| AGGACTGCTATAGATCAATT+TGG | + | 24248:3259-3278 | MS.gene039830:intergenic | 35.0% | |
| ATATCAAGGATCACCACTAA+CGG | + | 24248:3009-3028 | MS.gene039830:intergenic | 35.0% | |
| ATATGGACCTGACAAGAAAA+AGG | - | 24248:4210-4229 | MS.gene039830:intron | 35.0% | |
| ATGCTACTGTAGAAGTAATG+AGG | - | 24248:2960-2979 | MS.gene039830:intron | 35.0% | |
| ATTGAGTCTGTATTTGTGGT+TGG | - | 24248:3948-3967 | MS.gene039830:intron | 35.0% | |
| CAAAACTTGAAGTTTCATGC+AGG | - | 24248:4118-4137 | MS.gene039830:intron | 35.0% | |
| CAAATACAGACTCAATGTCA+AGG | + | 24248:3944-3963 | MS.gene039830:intergenic | 35.0% | |
| CAAATCTTATCTCAGTACAC+AGG | + | 24248:2581-2600 | MS.gene039830:intergenic | 35.0% | |
| CAATTAGGGAGAAAATGGTA+TGG | + | 24248:4168-4187 | MS.gene039830:intergenic | 35.0% | |
| CAGAACTAAAAGGAACAGTA+AGG | + | 24248:4084-4103 | MS.gene039830:intergenic | 35.0% | |
| CAGTAGATTTCATAGCAAAC+AGG | + | 24248:2503-2522 | MS.gene039830:intergenic | 35.0% | |
| CTAATACGATTATGCTACCT+TGG | - | 24248:3556-3575 | MS.gene039830:intron | 35.0% | |
| CTATATCTACCTATTCAGAG+GGG | + | 24248:2480-2499 | MS.gene039830:intergenic | 35.0% | |
| CTTCAGAAAGAATGTAAGAG+TGG | - | 24248:2335-2354 | MS.gene039830:intron | 35.0% | |
| GATCAATTTGGAGAAGTTTG+TGG | + | 24248:3247-3266 | MS.gene039830:intergenic | 35.0% | |
| GCTATATCTACCTATTCAGA+GGG | + | 24248:2481-2500 | MS.gene039830:intergenic | 35.0% | |
| GGTGTAGTTTCTGTTCAATT+AGG | - | 24248:1740-1759 | MS.gene039830:intron | 35.0% | |
| TAAATCAAAGTCACCGTTAG+TGG | - | 24248:2993-3012 | MS.gene039830:intron | 35.0% | |
| TACGTACAAAACAGCAAAAC+AGG | + | 24248:3279-3298 | MS.gene039830:intergenic | 35.0% | |
| TCCATCAATTAGGGAGAAAA+TGG | + | 24248:4173-4192 | MS.gene039830:intergenic | 35.0% | |
| TCCTTAATCTATAGCTATCG+GGG | + | 24248:4360-4379 | MS.gene039830:intergenic | 35.0% | |
| TGACATTGAGTCTGTATTTG+TGG | - | 24248:3944-3963 | MS.gene039830:intron | 35.0% | |
| TGCTACTGTAGAAGTAATGA+GGG | - | 24248:2961-2980 | MS.gene039830:intron | 35.0% | |
| TGCTGTTGACACATTTGAAA+AGG | - | 24248:3035-3054 | MS.gene039830:intron | 35.0% | |
| TGCTGTTGACACATTTGAAA+AGG | + | 24248:3054-3035 | MS.gene039830:intergenic | 35.0% | |
| TGTGGCACACATGTAAAATA+CGG | + | 24248:3806-3825 | MS.gene039830:intergenic | 35.0% | |
| TTAACTACCAAGGAAATCCT+CGG | + | 24248:3734-3753 | MS.gene039830:intergenic | 35.0% | |
| TTCATGCAGGAAAGAATGTA+GGG | - | 24248:4131-4150 | MS.gene039830:intron | 35.0% | |
| TTGAGTCTGTATTTGTGGTT+GGG | - | 24248:3949-3968 | MS.gene039830:intron | 35.0% | |
| TTTATAAGAGTGACCTGATG+TGG | - | 24248:2253-2272 | MS.gene039830:intron | 35.0% | |
| TTTCATGCAGGAAAGAATGT+AGG | - | 24248:4130-4149 | MS.gene039830:intron | 35.0% | |
| ! | AAAGAATGTAGGGATTGGTA+AGG | - | 24248:4141-4160 | MS.gene039830:intron | 35.0% |
| ! | ACCATTTTCTCCCTAATTGA+TGG | - | 24248:4169-4188 | MS.gene039830:intron | 35.0% |
| ! | ACCGATACTTTTGATCAGTA+TGG | - | 24248:2869-2888 | MS.gene039830:intron | 35.0% |
| ! | ACTGCCGAGTAATTTAAAAC+CGG | - | 24248:3102-3121 | MS.gene039830:intron | 35.0% |
| ! | ACTGCCGAGTAATTTAAAAC+CGG | + | 24248:3121-3102 | MS.gene039830:intergenic | 35.0% |
| ! | GAAAGTTAGTGTGTCATTCA+CGG | - | 24248:2275-2294 | MS.gene039830:intron | 35.0% |
| ! | TAAGGAAGATAGAGTACTTC+AGG | - | 24248:4374-4393 | MS.gene039830:CDS | 35.0% |
| ! | TTTTATCATTGCTGCCAACA+TGG | - | 24248:2119-2138 | MS.gene039830:intron | 35.0% |
| !! | AATTTGTACTCTAGGATTGC+AGG | + | 24248:4270-4289 | MS.gene039830:intergenic | 35.0% |
| !! | GTTGAACTCTCTGAAATATG+TGG | + | 24248:3339-3358 | MS.gene039830:intergenic | 35.0% |
| AAGAGAAGGTCTGATTTCCT+CGG | - | 24248:3698-3717 | MS.gene039830:intron | 40.0% | |
| AAGAGAAGGTCTGATTTCCT+CGG | + | 24248:3717-3698 | MS.gene039830:intergenic | 40.0% | |
| AATCTATAGCTATCGGGGTT+CGG | + | 24248:4355-4374 | MS.gene039830:intergenic | 40.0% | |
| ACACACTAACTTTCCACATC+AGG | + | 24248:2269-2288 | MS.gene039830:intergenic | 40.0% | |
| ACCCCGATAGCTATAGATTA+AGG | - | 24248:4356-4375 | MS.gene039830:CDS | 40.0% | |
| AGTACACAGGGTTAACTACA+TGG | + | 24248:2568-2587 | MS.gene039830:intergenic | 40.0% | |
| CAGAAAGAATGTAAGAGTGG+AGG | - | 24248:2338-2357 | MS.gene039830:intron | 40.0% | |
| CTTGTATGTGGAAATTCCCA+AGG | + | 24248:3576-3595 | MS.gene039830:intergenic | 40.0% | |
| GGCTATATCTACCTATTCAG+AGG | + | 24248:2482-2501 | MS.gene039830:intergenic | 40.0% | |
| TAATGCCAAGTACACCATGT+TGG | + | 24248:2136-2155 | MS.gene039830:intergenic | 40.0% | |
| TGACACATTTGAAAAGGCTG+TGG | + | 24248:3824-3843 | MS.gene039830:intergenic | 40.0% | |
| TGAGTCTGTATTTGTGGTTG+GGG | - | 24248:3950-3969 | MS.gene039830:intron | 40.0% | |
| TGGAGGTTTATGGTTTGATG+TGG | - | 24248:2355-2374 | MS.gene039830:intron | 40.0% | |
| TGTTAAGGTTTATGGTGACC+AGG | - | 24248:1493-1512 | MS.gene039830:CDS | 40.0% | |
| TTAACTACCGAGGAAATCCT+CGG | - | 24248:3131-3150 | MS.gene039830:intron | 40.0% | |
| TTAACTACCGAGGATTTCCT+CGG | + | 24248:3743-3724 | MS.gene039830:intergenic | 40.0% | |
| TTAACTACCGAGGATTTCCT+TGG | - | 24248:3724-3743 | MS.gene039830:intron | 40.0% | |
| ! | CCTCATGATGGTGTATTTCT+CGG | - | 24248:3513-3532 | MS.gene039830:intron | 40.0% |
| ! | CTAGACCAGACACTTTTACT+AGG | - | 24248:1792-1811 | MS.gene039830:intron | 40.0% |
| !! | ATTTGCTTTTGCGATGCCAT+TGG | - | 24248:3904-3923 | MS.gene039830:intron | 40.0% |
| !! | CGTCTTGGTGTTAAGGTTTA+TGG | - | 24248:1485-1504 | MS.gene039830:CDS | 40.0% |
| !! | CTACTTGATTTGCCTCATGA+TGG | - | 24248:3501-3520 | MS.gene039830:intron | 40.0% |
| !! | GAAAGGGTATCTTGAAACGA+TGG | + | 24248:3410-3429 | MS.gene039830:intergenic | 40.0% |
| !! | TCGAACCTAGTAAAAGTGTC+TGG | + | 24248:1800-1819 | MS.gene039830:intergenic | 40.0% |
| !!! | GCAGCCGGTTTTAAATTACT+CGG | - | 24248:3756-3775 | MS.gene039830:intron | 40.0% |
| !!! | GCAGCCGGTTTTAAATTACT+CGG | + | 24248:3775-3756 | MS.gene039830:intergenic | 40.0% |
| AATCCGGAATGCTCACAAGA+AGG | - | 24248:1421-1440 | MS.gene039830:CDS | 45.0% | |
| ACAGAACAGAACTAGGCACT+TGG | + | 24248:1984-2003 | MS.gene039830:intergenic | 45.0% | |
| ACTTGGCATTAAGTGCGCTT+TGG | - | 24248:2145-2164 | MS.gene039830:intron | 45.0% | |
| ATCCGGAATGCTCACAAGAA+GGG | - | 24248:1422-1441 | MS.gene039830:CDS | 45.0% | |
| ATTCGAGGGAGAGTTACTGA+TGG | + | 24248:1380-1399 | MS.gene039830:intergenic | 45.0% | |
| CAGACCGATGATGAATTCGA+GGG | + | 24248:1394-1413 | MS.gene039830:intergenic | 45.0% | |
| CATGAGGCAAATCAAGTAGC+AGG | + | 24248:3500-3519 | MS.gene039830:intergenic | 45.0% | |
| CCGAGAAATACACCATCATG+AGG | + | 24248:3516-3535 | MS.gene039830:intergenic | 45.0% | |
| CTCTATTGCGGCATCATCAA+CGG | + | 24248:4467-4486 | MS.gene039830:intergenic | 45.0% | |
| CTCTCCCTCGAATTCATCAT+CGG | - | 24248:1387-1406 | MS.gene039830:CDS | 45.0% | |
| CTGTATTTGTGGTTGGGGTT+GGG | - | 24248:3955-3974 | MS.gene039830:intron | 45.0% | |
| CTTGGCATTAAGTGCGCTTT+GGG | - | 24248:2146-2165 | MS.gene039830:intron | 45.0% | |
| GATGAGACGTGAACGCAAAA+AGG | - | 24248:4396-4415 | MS.gene039830:CDS | 45.0% | |
| GCAGGAAAGAATGTAGGGAT+TGG | - | 24248:4136-4155 | MS.gene039830:intron | 45.0% | |
| GGTTCTTGAACTCTCACCAA+TGG | + | 24248:3923-3942 | MS.gene039830:intergenic | 45.0% | |
| TCACAGTTTGTGCAATCTCG+CGG | - | 24248:2405-2424 | MS.gene039830:intron | 45.0% | |
| TCACCATTGGTCGTTGAGTT+TGG | + | 24248:1767-1786 | MS.gene039830:intergenic | 45.0% | |
| TCTGTATTTGTGGTTGGGGT+TGG | - | 24248:3954-3973 | MS.gene039830:intron | 45.0% | |
| TGGTCTAGCAACATCACCAT+TGG | + | 24248:1780-1799 | MS.gene039830:intergenic | 45.0% | |
| TGTATTTGTGGTTGGGGTTG+GGG | - | 24248:3956-3975 | MS.gene039830:intron | 45.0% | |
| ! | AAAATACGGTTTTGCCCCCT+CGG | - | 24248:3073-3092 | MS.gene039830:intron | 45.0% |
| ! | AAAATACGGTTTTGCCCCCT+CGG | + | 24248:3092-3073 | MS.gene039830:intergenic | 45.0% |
| ! | ATCGGTCTGCACTGATAATC+CGG | - | 24248:1405-1424 | MS.gene039830:CDS | 45.0% |
| ! | CAGTCGTGTGTGTGAGTTTT+AGG | - | 24248:1835-1854 | MS.gene039830:intron | 45.0% |
| ! | TGACGAACAATGATGGAACC+AGG | + | 24248:1527-1546 | MS.gene039830:intergenic | 45.0% |
| ! | TGTGCAATCTCGCGGATTAA+GGG | - | 24248:2413-2432 | MS.gene039830:intron | 45.0% |
| ! | TTGTGCAATCTCGCGGATTA+AGG | - | 24248:2412-2431 | MS.gene039830:intron | 45.0% |
| !!! | TCGTGTGTGTGAGTTTTAGG+TGG | - | 24248:1838-1857 | MS.gene039830:intron | 45.0% |
| AATGCTCACAAGAAGGGAGC+CGG | - | 24248:1428-1447 | MS.gene039830:CDS | 50.0% | |
| ACGGCCATTCTTGGTACTTC+CGG | + | 24248:1450-1469 | MS.gene039830:intergenic | 50.0% | |
| CGTGCATTTCCCCTCTGAAT+AGG | - | 24248:2468-2487 | MS.gene039830:intron | 50.0% | |
| CTCCCTTCTTGTGAGCATTC+CGG | + | 24248:1427-1446 | MS.gene039830:intergenic | 50.0% | |
| CTTAACACCAAGACGCCTTC+CGG | + | 24248:1480-1499 | MS.gene039830:intergenic | 50.0% | |
| GCAGACCGATGATGAATTCG+AGG | + | 24248:1395-1414 | MS.gene039830:intergenic | 50.0% | |
| GGCACAACTGAGGCACAATT+TGG | - | 24248:2540-2559 | MS.gene039830:intron | 50.0% | |
| GTATTTGTGGTTGGGGTTGG+GGG | - | 24248:3957-3976 | MS.gene039830:intron | 50.0% | |
| TACCAAGAATGGCCGTGACT+CGG | - | 24248:1454-1473 | MS.gene039830:CDS | 50.0% | |
| TCCACGCTGACGAACAATGA+TGG | + | 24248:1534-1553 | MS.gene039830:intergenic | 50.0% | |
| TCCATCATTGTTCGTCAGCG+TGG | - | 24248:1530-1549 | MS.gene039830:CDS | 50.0% | |
| TGCTGCCAACATGGTGTACT+TGG | - | 24248:2128-2147 | MS.gene039830:intron | 50.0% | |
| ! | CCTTGGTAGTTAACTGCAGC+CGG | - | 24248:3741-3760 | MS.gene039830:intron | 50.0% |
| ! | TCGGAACTGGTTCTTCTCGT+GGG | + | 24248:4336-4355 | MS.gene039830:intergenic | 50.0% |
| ! | TTCGGAACTGGTTCTTCTCG+TGG | + | 24248:4337-4356 | MS.gene039830:intergenic | 50.0% |
| ACGGAAGCGAGCATTAGCTG+TGG | + | 24248:4448-4467 | MS.gene039830:intergenic | 55.0% | |
| ACTCGGCAGTTAACTGCCGA+GGG | - | 24248:3773-3792 | MS.gene039830:intron | 55.0% | |
| ACTCGGCAGTTAACTGCCGA+GGG | + | 24248:3792-3773 | MS.gene039830:intergenic | 55.0% | |
| CCGGCTGCAGTTAACTACCA+AGG | + | 24248:3744-3763 | MS.gene039830:intergenic | 55.0% | |
| CCTCGGTAGTTAACTGCAGC+CGG | + | 24248:3124-3143 | MS.gene039830:intergenic | 55.0% | |
| CTCACACACACGACTGTGTG+AGG | + | 24248:1831-1850 | MS.gene039830:intergenic | 55.0% | |
| GGGCCAAACTCAACGACCAA+TGG | - | 24248:1761-1780 | MS.gene039830:intron | 55.0% | |
| TACTCGGCAGTTAACTGCCG+AGG | - | 24248:3772-3791 | MS.gene039830:intron | 55.0% | |
| TACTCGGCAGTTAACTGCCG+AGG | + | 24248:3791-3772 | MS.gene039830:intergenic | 55.0% | |
| TAGCTATCGGGGTTCGGAAC+TGG | + | 24248:4349-4368 | MS.gene039830:intergenic | 55.0% | |
| TCCTCGGCAGTTAACTACCG+AGG | - | 24248:3714-3733 | MS.gene039830:intron | 55.0% | |
| TCCTCGGCAGTTAACTACCG+AGG | + | 24248:3733-3714 | MS.gene039830:intergenic | 55.0% | |
| TCCTCGGTAGTTAACTGCCG+AGG | - | 24248:3147-3166 | MS.gene039830:intron | 55.0% | |
| TCCTCGGTAGTTAACTGCCG+AGG | + | 24248:3166-3147 | MS.gene039830:intergenic | 55.0% | |
| TGGAACCAGGTTTAGCGACC+TGG | + | 24248:1514-1533 | MS.gene039830:intergenic | 55.0% | |
| TGTTCGTCAGCGTGGAACCA+AGG | - | 24248:1538-1557 | MS.gene039830:intron | 55.0% | |
| ! | GGCATTAAGTGCGCTTTGGG+CGG | - | 24248:2149-2168 | MS.gene039830:intron | 55.0% |
| !! | CGCGGATTAAGGGTGCTGTT+AGG | - | 24248:2423-2442 | MS.gene039830:intron | 55.0% |
| !! | CGGAAGGCGTCTTGGTGTTA+AGG | - | 24248:1478-1497 | MS.gene039830:CDS | 55.0% |
| !! | GGAGCCGGAAGTACCAAGAA+TGG | - | 24248:1443-1462 | MS.gene039830:CDS | 55.0% |
| CCGGCTGCAGTTAACTACCG+AGG | - | 24248:3121-3140 | MS.gene039830:intron | 60.0% | |
| CTCGGCAGTTAACTGCCGAG+GGG | - | 24248:3091-3110 | MS.gene039830:intron | 60.0% | |
| CTCGGCAGTTAACTGCCGAG+GGG | + | 24248:3110-3091 | MS.gene039830:intergenic | 60.0% | |
| GGTGACCAGGTCGCTAAACC+TGG | - | 24248:1506-1525 | MS.gene039830:CDS | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | - | 24248:3775-3794 | MS.gene039830:intron | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | + | 24248:3794-3775 | MS.gene039830:intergenic | 60.0% | |
| ! | AAGAATGGCCGTGACTCGGC+CGG | - | 24248:1458-1477 | MS.gene039830:CDS | 60.0% |
| GGCCGAGTCACGGCCATTCT+TGG | + | 24248:1459-1478 | MS.gene039830:intergenic | 65.0% | |
| GACGCCTTCCGGCCGAGTCA+CGG | + | 24248:1469-1488 | MS.gene039830:intergenic | 70.0% | |
| ! | ATGGCCGTGACTCGGCCGGA+AGG | - | 24248:1462-1481 | MS.gene039830:CDS | 70.0% |
| !! | GACTCGGCCGGAAGGCGTCT+TGG | - | 24248:1470-1489 | MS.gene039830:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24248 | gene | 1371 | 4501 | 1371 | ID=MS.gene039830 |
| 24248 | mRNA | 1371 | 4501 | 1371 | ID=MS.gene039830.t1;Parent=MS.gene039830 |
| 24248 | exon | 4313 | 4501 | 4313 | ID=MS.gene039830.t1.exon1;Parent=MS.gene039830.t1 |
| 24248 | CDS | 4313 | 4501 | 4313 | ID=cds.MS.gene039830.t1;Parent=MS.gene039830.t1 |
| 24248 | exon | 1641 | 1742 | 1641 | ID=MS.gene039830.t1.exon2;Parent=MS.gene039830.t1 |
| 24248 | CDS | 1641 | 1742 | 1641 | ID=cds.MS.gene039830.t1;Parent=MS.gene039830.t1 |
| 24248 | exon | 1371 | 1550 | 1371 | ID=MS.gene039830.t1.exon3;Parent=MS.gene039830.t1 |
| 24248 | CDS | 1371 | 1550 | 1371 | ID=cds.MS.gene039830.t1;Parent=MS.gene039830.t1 |
| Gene Sequence |
| Protein sequence |
