Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039829.t1 | AFK41007.1 | 94.9 | 156 | 8 | 0 | 1 | 156 | 38 | 193 | 2.30E-77 | 298.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039829.t1 | P82190 | 75.0 | 140 | 32 | 1 | 16 | 155 | 53 | 189 | 1.0e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039829.t1 | G7IW75 | 94.9 | 156 | 8 | 0 | 1 | 156 | 38 | 193 | 1.7e-77 | 298.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039829 | MS.gene85449 | PPI |
| MS.gene039829 | MS.gene058660 | PPI |
| MS.gene039829 | MS.gene023966 | PPI |
| MS.gene36648 | MS.gene039829 | PPI |
| MS.gene039829 | MS.gene023964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039829.t1 | MTR_3g020680 | 94.872 | 156 | 8 | 0 | 1 | 156 | 38 | 193 | 1.13e-108 | 307 |
| MS.gene039829.t1 | MTR_3g014010 | 54.082 | 98 | 44 | 1 | 14 | 110 | 35 | 132 | 8.43e-26 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039829.t1 | AT5G40950 | 69.375 | 160 | 41 | 4 | 4 | 156 | 40 | 198 | 5.45e-70 | 210 |
| MS.gene039829.t1 | AT5G15220 | 56.989 | 93 | 39 | 1 | 19 | 110 | 45 | 137 | 4.01e-24 | 92.0 |
| MS.gene039829.t1 | AT5G15220 | 56.989 | 93 | 39 | 1 | 19 | 110 | 45 | 137 | 4.01e-24 | 92.0 |
| MS.gene039829.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
| MS.gene039829.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
| MS.gene039829.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
| MS.gene039829.t1 | AT2G16930 | 65.278 | 72 | 25 | 0 | 19 | 90 | 45 | 116 | 4.37e-24 | 92.0 |
Find 50 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTTGGTGTTAAGGTTTA+TGG | 0.120927 | 3.3:-12652647 | MS.gene039829:CDS |
| TCCATCAATTAGGGAGAAAA+TGG | 0.286561 | 3.3:+12649962 | None:intergenic |
| CTCCCTTCTTGTGAGCATTC+CGG | 0.296980 | 3.3:+12652708 | None:intergenic |
| GGCCGAGTCACGGCCATTCT+TGG | 0.302166 | 3.3:+12652676 | None:intergenic |
| GTTGTAAAATTTGAGAAATA+TGG | 0.308551 | 3.3:-12649939 | MS.gene039829:CDS |
| TAAGGAAGATAGAGTACTTC+AGG | 0.334007 | 3.3:-12649758 | MS.gene039829:CDS |
| ACCCCGATAGCTATAGATTA+AGG | 0.337827 | 3.3:-12649776 | MS.gene039829:CDS |
| CGGAAGGCGTCTTGGTGTTA+AGG | 0.357138 | 3.3:-12652654 | MS.gene039829:CDS |
| ATATGGACCTGACAAGAAAA+AGG | 0.362247 | 3.3:-12649922 | MS.gene039829:intron |
| GATGAGACGTGAACGCAAAA+AGG | 0.391120 | 3.3:-12649736 | MS.gene039829:CDS |
| TAGCTATCGGGGTTCGGAAC+TGG | 0.398737 | 3.3:+12649786 | None:intergenic |
| TTCCTTAATCTATAGCTATC+GGG | 0.403484 | 3.3:+12649774 | None:intergenic |
| CTTAACACCAAGACGCCTTC+CGG | 0.405403 | 3.3:+12652655 | None:intergenic |
| ATCGGTCTGCACTGATAATC+CGG | 0.408476 | 3.3:-12652727 | MS.gene039829:CDS |
| GAAGTATAGAATCAACAATC+TGG | 0.424433 | 3.3:+12649642 | None:intergenic |
| CTTCCTTAATCTATAGCTAT+CGG | 0.452680 | 3.3:+12649773 | None:intergenic |
| GACTCGGCCGGAAGGCGTCT+TGG | 0.454151 | 3.3:-12652662 | MS.gene039829:CDS |
| AATCTATAGCTATCGGGGTT+CGG | 0.454206 | 3.3:+12649780 | None:intergenic |
| ACGGCCATTCTTGGTACTTC+CGG | 0.493809 | 3.3:+12652685 | None:intergenic |
| TTCGGAACTGGTTCTTCTCG+TGG | 0.494529 | 3.3:+12649798 | None:intergenic |
| TTTCATGCAGGAAAGAATGT+AGG | 0.500592 | 3.3:-12650002 | MS.gene039829:CDS |
| CAAAACTTGAAGTTTCATGC+AGG | 0.502679 | 3.3:-12650014 | MS.gene039829:intron |
| TCCACGCTGACGAACAATGA+TGG | 0.507312 | 3.3:+12652601 | None:intergenic |
| TACCAAGAATGGCCGTGACT+CGG | 0.523716 | 3.3:-12652678 | MS.gene039829:CDS |
| CTCTATTGCGGCATCATCAA+CGG | 0.525471 | 3.3:+12649668 | None:intergenic |
| GGTGACCAGGTCGCTAAACC+TGG | 0.525958 | 3.3:-12652626 | MS.gene039829:CDS |
| TTCATGCAGGAAAGAATGTA+GGG | 0.529341 | 3.3:-12650001 | MS.gene039829:CDS |
| GCAGGAAAGAATGTAGGGAT+TGG | 0.532144 | 3.3:-12649996 | MS.gene039829:CDS |
| GCAGACCGATGATGAATTCG+AGG | 0.535895 | 3.3:+12652740 | None:intergenic |
| GACGCCTTCCGGCCGAGTCA+CGG | 0.537877 | 3.3:+12652666 | None:intergenic |
| TCGGAACTGGTTCTTCTCGT+GGG | 0.545521 | 3.3:+12649799 | None:intergenic |
| AAGAATGGCCGTGACTCGGC+CGG | 0.548270 | 3.3:-12652674 | MS.gene039829:CDS |
| TCCATCATTGTTCGTCAGCG+TGG | 0.555721 | 3.3:-12652602 | MS.gene039829:CDS |
| AATCCGGAATGCTCACAAGA+AGG | 0.555772 | 3.3:-12652711 | MS.gene039829:CDS |
| TGGAACCAGGTTTAGCGACC+TGG | 0.556823 | 3.3:+12652621 | None:intergenic |
| AATGCTCACAAGAAGGGAGC+CGG | 0.563169 | 3.3:-12652704 | MS.gene039829:CDS |
| TGTTAAGGTTTATGGTGACC+AGG | 0.569002 | 3.3:-12652639 | MS.gene039829:CDS |
| GGAGCCGGAAGTACCAAGAA+TGG | 0.573762 | 3.3:-12652689 | MS.gene039829:CDS |
| ATCCGGAATGCTCACAAGAA+GGG | 0.574035 | 3.3:-12652710 | MS.gene039829:CDS |
| CTCTCCCTCGAATTCATCAT+CGG | 0.577761 | 3.3:-12652745 | MS.gene039829:CDS |
| TCCTTAATCTATAGCTATCG+GGG | 0.582549 | 3.3:+12649775 | None:intergenic |
| AAAGAATGTAGGGATTGGTA+AGG | 0.582902 | 3.3:-12649991 | MS.gene039829:CDS |
| ATGGCCGTGACTCGGCCGGA+AGG | 0.604039 | 3.3:-12652670 | MS.gene039829:CDS |
| TGTTCGTCAGCGTGGAACCA+AGG | 0.607342 | 3.3:-12652594 | MS.gene039829:intron |
| TGACGAACAATGATGGAACC+AGG | 0.634962 | 3.3:+12652608 | None:intergenic |
| CAATTAGGGAGAAAATGGTA+TGG | 0.636675 | 3.3:+12649967 | None:intergenic |
| ACAATCTGGATTCTCTATTG+CGG | 0.641419 | 3.3:+12649656 | None:intergenic |
| ATTCGAGGGAGAGTTACTGA+TGG | 0.652700 | 3.3:+12652755 | None:intergenic |
| CAGACCGATGATGAATTCGA+GGG | 0.678497 | 3.3:+12652741 | None:intergenic |
| ACGGAAGCGAGCATTAGCTG+TGG | 0.714472 | 3.3:+12649687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAATAAAATGAAAT+TGG | - | chr3.3:12650001-12650020 | MS.gene039829:CDS | 10.0% |
| !! | GAAAGAAAAAATAAAAAAAA+GGG | - | chr3.3:12651930-12651949 | MS.gene039829:intron | 10.0% |
| !! | TGAAAGAAAAAATAAAAAAA+AGG | - | chr3.3:12651929-12651948 | MS.gene039829:intron | 10.0% |
| !!! | TTATATGAATTTTGAAATTA+TGG | - | chr3.3:12649938-12649957 | MS.gene039829:CDS | 10.0% |
| !! | AAATCCATAAACTTAAAAAA+GGG | + | chr3.3:12650937-12650956 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAAACAAAGAA+AGG | + | chr3.3:12651500-12651519 | None:intergenic | 15.0% |
| !! | AGAAAAAAAAAACAAAGAAA+GGG | + | chr3.3:12651499-12651518 | None:intergenic | 15.0% |
| !! | TTCATTATTATTTAGACATT+TGG | + | chr3.3:12650316-12650335 | None:intergenic | 15.0% |
| !! | AAGATTTGATTGTTATGATT+TGG | - | chr3.3:12650875-12650894 | MS.gene039829:intron | 20.0% |
| !! | AATAACAAATTTAGAGAGAA+AGG | + | chr3.3:12651709-12651728 | None:intergenic | 20.0% |
| !! | AATCCATAAACTTAAAAAAG+GGG | + | chr3.3:12650936-12650955 | None:intergenic | 20.0% |
| !! | ATAACAAATTTAGAGAGAAA+GGG | + | chr3.3:12651708-12651727 | None:intergenic | 20.0% |
| !! | CAAAATTCATATAACAATTC+AGG | + | chr3.3:12649932-12649951 | None:intergenic | 20.0% |
| !! | CAAATCCATAAACTTAAAAA+AGG | + | chr3.3:12650938-12650957 | None:intergenic | 20.0% |
| !! | CTTGATATTGTAGAAAATTA+CGG | - | chr3.3:12652139-12652158 | MS.gene039829:intron | 20.0% |
| !! | GAAAAATAATCAGAACTAAA+AGG | + | chr3.3:12652376-12652395 | None:intergenic | 20.0% |
| !! | GTTGTAAAATTTGAGAAATA+TGG | - | chr3.3:12652475-12652494 | MS.gene039829:intron | 20.0% |
| !! | TTCAACAATATCTTAAAAAC+TGG | + | chr3.3:12652334-12652353 | None:intergenic | 20.0% |
| !!! | AATTTGTTATTTGCATTTAC+AGG | - | chr3.3:12651718-12651737 | MS.gene039829:intron | 20.0% |
| !!! | CAAAAAAAAAGTGAAGTTTT+TGG | - | chr3.3:12651903-12651922 | MS.gene039829:intron | 20.0% |
| !!! | CTTATCATGATTTTAAATTG+CGG | + | chr3.3:12652265-12652284 | None:intergenic | 20.0% |
| !!! | GCAATTTAAAATCATGATAA+GGG | - | chr3.3:12652264-12652283 | MS.gene039829:intron | 20.0% |
| !!! | GTAATTTTCTACAATATCAA+GGG | + | chr3.3:12652140-12652159 | None:intergenic | 20.0% |
| !!! | TTTTAGTAAGAAAAGAATTG+TGG | - | chr3.3:12649885-12649904 | MS.gene039829:intron | 20.0% |
| ! | ACTGTCAGTGAATAAAAATT+TGG | - | chr3.3:12650801-12650820 | MS.gene039829:intron | 25.0% |
| ! | ATAAAAAAAAGGGATTGAAG+TGG | - | chr3.3:12651940-12651959 | MS.gene039829:intron | 25.0% |
| ! | ATCGTATTAGTTATTTGCAT+TGG | + | chr3.3:12651828-12651847 | None:intergenic | 25.0% |
| ! | CAATCAAAAATTCATACAGA+AGG | + | chr3.3:12650663-12650682 | None:intergenic | 25.0% |
| ! | TATAAAGTAATGATACGAAG+AGG | + | chr3.3:12650521-12650540 | None:intergenic | 25.0% |
| ! | TATGTCACACATGTAAAATA+CGG | - | chr3.3:12651341-12651360 | MS.gene039829:intron | 25.0% |
| !! | ATTTTACAACTCCATCAATT+AGG | + | chr3.3:12652465-12652484 | None:intergenic | 25.0% |
| !! | CGCAATTTAAAATCATGATA+AGG | - | chr3.3:12652263-12652282 | MS.gene039829:intron | 25.0% |
| !! | CGTAATTTTCTACAATATCA+AGG | + | chr3.3:12652141-12652160 | None:intergenic | 25.0% |
| !! | TACAAGAAAAGTGAAGTTTT+TGG | - | chr3.3:12651872-12651891 | MS.gene039829:intron | 25.0% |
| !! | TTTATTACCTTTTTCTTGTC+AGG | + | chr3.3:12652502-12652521 | None:intergenic | 25.0% |
| !! | TTTTACAACTCCATCAATTA+GGG | + | chr3.3:12652464-12652483 | None:intergenic | 25.0% |
| !!! | ATGATTAGTCTAGTAATTGT+TGG | - | chr3.3:12650338-12650357 | MS.gene039829:intron | 25.0% |
| !!! | TTTCCCCTTTTTTAAGTTTA+TGG | - | chr3.3:12650930-12650949 | MS.gene039829:intron | 25.0% |
| AAACAAAACAGAACAGAACT+AGG | + | chr3.3:12650273-12650292 | None:intergenic | 30.0% | |
| AAATCTTATCTCAGTACACA+GGG | + | chr3.3:12650862-12650881 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAAAGAGA+AGG | - | chr3.3:12651966-12651985 | MS.gene039829:intron | 30.0% | |
| AAGAAGAAGAAGAAAAGAGA+AGG | + | chr3.3:12651985-12651966 | None:intergenic | 30.0% | |
| ATAAAAATTTGGCACAACTG+AGG | - | chr3.3:12650812-12650831 | MS.gene039829:intron | 30.0% | |
| CTGAATATAGAACAAACATG+AGG | + | chr3.3:12651214-12651233 | None:intergenic | 30.0% | |
| CTTCCTTAATCTATAGCTAT+CGG | + | chr3.3:12652644-12652663 | None:intergenic | 30.0% | |
| GTCAGTAAGAACTATACTTT+GGG | - | chr3.3:12649972-12649991 | MS.gene039829:CDS | 30.0% | |
| GTGTAGTTTCTGTTCAATTA+GGG | - | chr3.3:12650023-12650042 | MS.gene039829:intron | 30.0% | |
| GTTCTTACTGACAATTAACA+TGG | + | chr3.3:12649964-12649983 | None:intergenic | 30.0% | |
| TAATACGATTATGCTACCTT+GGG | - | chr3.3:12651839-12651858 | MS.gene039829:intron | 30.0% | |
| TACAAGAAAAGTGAAGTTTG+TGG | - | chr3.3:12651579-12651598 | MS.gene039829:intron | 30.0% | |
| TGGCAGCAATGATAAAAATT+AGG | + | chr3.3:12650398-12650417 | None:intergenic | 30.0% | |
| TGTCAGTAAGAACTATACTT+TGG | - | chr3.3:12649971-12649990 | MS.gene039829:CDS | 30.0% | |
| TTACTTCTCTATGCATTTCT+AGG | + | chr3.3:12651069-12651088 | None:intergenic | 30.0% | |
| TTCCTTAATCTATAGCTATC+GGG | + | chr3.3:12652643-12652662 | None:intergenic | 30.0% | |
| ! | ACCATACTGATCAAAAGTAT+CGG | + | chr3.3:12651155-12651174 | None:intergenic | 30.0% |
| ! | AGGAAGTTCTTTAAAAGTGA+TGG | + | chr3.3:12651194-12651213 | None:intergenic | 30.0% |
| ! | CAACAGCAATTTTCATATCA+AGG | + | chr3.3:12651305-12651324 | None:intergenic | 30.0% |
| ! | GGTGACTTTGATTTAAAACA+TGG | + | chr3.3:12651270-12651289 | None:intergenic | 30.0% |
| ! | TGTTATGATTTGGCACAATT+TGG | - | chr3.3:12650885-12650904 | MS.gene039829:intron | 30.0% |
| !! | AACTTCACTTTTCTTGTATG+TGG | + | chr3.3:12651870-12651889 | None:intergenic | 30.0% |
| !! | AATCATGATAAGGGTGTTAT+AGG | - | chr3.3:12652273-12652292 | MS.gene039829:intron | 30.0% |
| !! | AGCTAGTTAATTTGTACTCT+AGG | + | chr3.3:12652560-12652579 | None:intergenic | 30.0% |
| AACAAAGAAAGGGATTGAAG+TGG | + | chr3.3:12651489-12651508 | None:intergenic | 35.0% | |
| AATGTAAGAGTGGAGGTTTA+TGG | - | chr3.3:12650627-12650646 | MS.gene039829:intron | 35.0% | |
| ACAATCTGGATTCTCTATTG+CGG | + | chr3.3:12652761-12652780 | None:intergenic | 35.0% | |
| AGAGAATGAAAGAAACACCT+TGG | + | chr3.3:12649840-12649859 | None:intergenic | 35.0% | |
| AGGACTGCTATAGATCAATT+TGG | + | chr3.3:12651541-12651560 | None:intergenic | 35.0% | |
| ATATCAAGGATCACCACTAA+CGG | + | chr3.3:12651291-12651310 | None:intergenic | 35.0% | |
| ATATGGACCTGACAAGAAAA+AGG | - | chr3.3:12652492-12652511 | MS.gene039829:intron | 35.0% | |
| ATGCTACTGTAGAAGTAATG+AGG | - | chr3.3:12651242-12651261 | MS.gene039829:intron | 35.0% | |
| ATTGAGTCTGTATTTGTGGT+TGG | - | chr3.3:12652230-12652249 | MS.gene039829:intron | 35.0% | |
| CAAAACTTGAAGTTTCATGC+AGG | - | chr3.3:12652400-12652419 | MS.gene039829:intron | 35.0% | |
| CAAATACAGACTCAATGTCA+AGG | + | chr3.3:12652226-12652245 | None:intergenic | 35.0% | |
| CAAATCTTATCTCAGTACAC+AGG | + | chr3.3:12650863-12650882 | None:intergenic | 35.0% | |
| CAATTAGGGAGAAAATGGTA+TGG | + | chr3.3:12652450-12652469 | None:intergenic | 35.0% | |
| CAGAACTAAAAGGAACAGTA+AGG | + | chr3.3:12652366-12652385 | None:intergenic | 35.0% | |
| CAGTAGATTTCATAGCAAAC+AGG | + | chr3.3:12650785-12650804 | None:intergenic | 35.0% | |
| CTAATACGATTATGCTACCT+TGG | - | chr3.3:12651838-12651857 | MS.gene039829:intron | 35.0% | |
| CTATATCTACCTATTCAGAG+GGG | + | chr3.3:12650762-12650781 | None:intergenic | 35.0% | |
| CTTCAGAAAGAATGTAAGAG+TGG | - | chr3.3:12650617-12650636 | MS.gene039829:intron | 35.0% | |
| GATCAATTTGGAGAAGTTTG+TGG | + | chr3.3:12651529-12651548 | None:intergenic | 35.0% | |
| GCTATATCTACCTATTCAGA+GGG | + | chr3.3:12650763-12650782 | None:intergenic | 35.0% | |
| GGTGTAGTTTCTGTTCAATT+AGG | - | chr3.3:12650022-12650041 | MS.gene039829:intron | 35.0% | |
| TAAATCAAAGTCACCGTTAG+TGG | - | chr3.3:12651275-12651294 | MS.gene039829:intron | 35.0% | |
| TACGTACAAAACAGCAAAAC+AGG | + | chr3.3:12651561-12651580 | None:intergenic | 35.0% | |
| TCCATCAATTAGGGAGAAAA+TGG | + | chr3.3:12652455-12652474 | None:intergenic | 35.0% | |
| TCCTTAATCTATAGCTATCG+GGG | + | chr3.3:12652642-12652661 | None:intergenic | 35.0% | |
| TGACATTGAGTCTGTATTTG+TGG | - | chr3.3:12652226-12652245 | MS.gene039829:intron | 35.0% | |
| TGCTACTGTAGAAGTAATGA+GGG | - | chr3.3:12651243-12651262 | MS.gene039829:intron | 35.0% | |
| TGCTGTTGACACATTTGAAA+AGG | - | chr3.3:12651317-12651336 | MS.gene039829:intron | 35.0% | |
| TGCTGTTGACACATTTGAAA+AGG | + | chr3.3:12651336-12651317 | None:intergenic | 35.0% | |
| TGTGGCACACATGTAAAATA+CGG | + | chr3.3:12652088-12652107 | None:intergenic | 35.0% | |
| TTAACTACCAAGGAAATCCT+CGG | + | chr3.3:12652016-12652035 | None:intergenic | 35.0% | |
| TTCATGCAGGAAAGAATGTA+GGG | - | chr3.3:12652413-12652432 | MS.gene039829:intron | 35.0% | |
| TTGAGTCTGTATTTGTGGTT+GGG | - | chr3.3:12652231-12652250 | MS.gene039829:intron | 35.0% | |
| TTTATAAGAGTGACCTGATG+TGG | - | chr3.3:12650535-12650554 | MS.gene039829:intron | 35.0% | |
| TTTCATGCAGGAAAGAATGT+AGG | - | chr3.3:12652412-12652431 | MS.gene039829:intron | 35.0% | |
| ! | AAAGAATGTAGGGATTGGTA+AGG | - | chr3.3:12652423-12652442 | MS.gene039829:intron | 35.0% |
| ! | ACCATTTTCTCCCTAATTGA+TGG | - | chr3.3:12652451-12652470 | MS.gene039829:intron | 35.0% |
| ! | ACCGATACTTTTGATCAGTA+TGG | - | chr3.3:12651151-12651170 | MS.gene039829:intron | 35.0% |
| ! | ACTGCCGAGTAATTTAAAAC+CGG | - | chr3.3:12651384-12651403 | MS.gene039829:intron | 35.0% |
| ! | ACTGCCGAGTAATTTAAAAC+CGG | + | chr3.3:12651403-12651384 | None:intergenic | 35.0% |
| ! | GAAAGTTAGTGTGTCATTCA+CGG | - | chr3.3:12650557-12650576 | MS.gene039829:intron | 35.0% |
| ! | TAAGGAAGATAGAGTACTTC+AGG | - | chr3.3:12652656-12652675 | MS.gene039829:CDS | 35.0% |
| ! | TTTTATCATTGCTGCCAACA+TGG | - | chr3.3:12650401-12650420 | MS.gene039829:intron | 35.0% |
| !! | AATTTGTACTCTAGGATTGC+AGG | + | chr3.3:12652552-12652571 | None:intergenic | 35.0% |
| !! | GTTGAACTCTCTGAAATATG+TGG | + | chr3.3:12651621-12651640 | None:intergenic | 35.0% |
| AAGAGAAGGTCTGATTTCCT+CGG | - | chr3.3:12651980-12651999 | MS.gene039829:intron | 40.0% | |
| AAGAGAAGGTCTGATTTCCT+CGG | + | chr3.3:12651999-12651980 | None:intergenic | 40.0% | |
| AATCTATAGCTATCGGGGTT+CGG | + | chr3.3:12652637-12652656 | None:intergenic | 40.0% | |
| ACACACTAACTTTCCACATC+AGG | + | chr3.3:12650551-12650570 | None:intergenic | 40.0% | |
| ACCCCGATAGCTATAGATTA+AGG | - | chr3.3:12652638-12652657 | MS.gene039829:CDS | 40.0% | |
| AGTACACAGGGTTAACTACA+TGG | + | chr3.3:12650850-12650869 | None:intergenic | 40.0% | |
| CAGAAAGAATGTAAGAGTGG+AGG | - | chr3.3:12650620-12650639 | MS.gene039829:intron | 40.0% | |
| CTTGTATGTGGAAATTCCCA+AGG | + | chr3.3:12651858-12651877 | None:intergenic | 40.0% | |
| GGCTATATCTACCTATTCAG+AGG | + | chr3.3:12650764-12650783 | None:intergenic | 40.0% | |
| TAATGCCAAGTACACCATGT+TGG | + | chr3.3:12650418-12650437 | None:intergenic | 40.0% | |
| TGACACATTTGAAAAGGCTG+TGG | + | chr3.3:12652106-12652125 | None:intergenic | 40.0% | |
| TGAGTCTGTATTTGTGGTTG+GGG | - | chr3.3:12652232-12652251 | MS.gene039829:intron | 40.0% | |
| TGGAGGTTTATGGTTTGATG+TGG | - | chr3.3:12650637-12650656 | MS.gene039829:intron | 40.0% | |
| TGTTAAGGTTTATGGTGACC+AGG | - | chr3.3:12649775-12649794 | MS.gene039829:CDS | 40.0% | |
| TTAACTACCGAGGAAATCCT+CGG | - | chr3.3:12651413-12651432 | MS.gene039829:intron | 40.0% | |
| TTAACTACCGAGGATTTCCT+CGG | + | chr3.3:12652025-12652006 | None:intergenic | 40.0% | |
| TTAACTACCGAGGATTTCCT+TGG | - | chr3.3:12652006-12652025 | MS.gene039829:intron | 40.0% | |
| ! | CCTCATGATGGTGTATTTCT+CGG | - | chr3.3:12651795-12651814 | MS.gene039829:intron | 40.0% |
| ! | CTAGACCAGACACTTTTACT+AGG | - | chr3.3:12650074-12650093 | MS.gene039829:intron | 40.0% |
| !! | ATTTGCTTTTGCGATGCCAT+TGG | - | chr3.3:12652186-12652205 | MS.gene039829:intron | 40.0% |
| !! | CGTCTTGGTGTTAAGGTTTA+TGG | - | chr3.3:12649767-12649786 | MS.gene039829:CDS | 40.0% |
| !! | CTACTTGATTTGCCTCATGA+TGG | - | chr3.3:12651783-12651802 | MS.gene039829:intron | 40.0% |
| !! | GAAAGGGTATCTTGAAACGA+TGG | + | chr3.3:12651692-12651711 | None:intergenic | 40.0% |
| !! | TCGAACCTAGTAAAAGTGTC+TGG | + | chr3.3:12650082-12650101 | None:intergenic | 40.0% |
| !!! | GCAGCCGGTTTTAAATTACT+CGG | - | chr3.3:12652038-12652057 | MS.gene039829:intron | 40.0% |
| !!! | GCAGCCGGTTTTAAATTACT+CGG | + | chr3.3:12652057-12652038 | None:intergenic | 40.0% |
| AATCCGGAATGCTCACAAGA+AGG | - | chr3.3:12649703-12649722 | MS.gene039829:CDS | 45.0% | |
| ACAGAACAGAACTAGGCACT+TGG | + | chr3.3:12650266-12650285 | None:intergenic | 45.0% | |
| ACTTGGCATTAAGTGCGCTT+TGG | - | chr3.3:12650427-12650446 | MS.gene039829:intron | 45.0% | |
| ATCCGGAATGCTCACAAGAA+GGG | - | chr3.3:12649704-12649723 | MS.gene039829:CDS | 45.0% | |
| ATTCGAGGGAGAGTTACTGA+TGG | + | chr3.3:12649662-12649681 | None:intergenic | 45.0% | |
| CAGACCGATGATGAATTCGA+GGG | + | chr3.3:12649676-12649695 | None:intergenic | 45.0% | |
| CATGAGGCAAATCAAGTAGC+AGG | + | chr3.3:12651782-12651801 | None:intergenic | 45.0% | |
| CCGAGAAATACACCATCATG+AGG | + | chr3.3:12651798-12651817 | None:intergenic | 45.0% | |
| CTCTATTGCGGCATCATCAA+CGG | + | chr3.3:12652749-12652768 | None:intergenic | 45.0% | |
| CTCTCCCTCGAATTCATCAT+CGG | - | chr3.3:12649669-12649688 | MS.gene039829:CDS | 45.0% | |
| CTGTATTTGTGGTTGGGGTT+GGG | - | chr3.3:12652237-12652256 | MS.gene039829:intron | 45.0% | |
| CTTGGCATTAAGTGCGCTTT+GGG | - | chr3.3:12650428-12650447 | MS.gene039829:intron | 45.0% | |
| GATGAGACGTGAACGCAAAA+AGG | - | chr3.3:12652678-12652697 | MS.gene039829:CDS | 45.0% | |
| GCAGGAAAGAATGTAGGGAT+TGG | - | chr3.3:12652418-12652437 | MS.gene039829:intron | 45.0% | |
| GGTTCTTGAACTCTCACCAA+TGG | + | chr3.3:12652205-12652224 | None:intergenic | 45.0% | |
| TCACAGTTTGTGCAATCTCG+CGG | - | chr3.3:12650687-12650706 | MS.gene039829:intron | 45.0% | |
| TCACCATTGGTCGTTGAGTT+TGG | + | chr3.3:12650049-12650068 | None:intergenic | 45.0% | |
| TCTGTATTTGTGGTTGGGGT+TGG | - | chr3.3:12652236-12652255 | MS.gene039829:intron | 45.0% | |
| TGGTCTAGCAACATCACCAT+TGG | + | chr3.3:12650062-12650081 | None:intergenic | 45.0% | |
| TGTATTTGTGGTTGGGGTTG+GGG | - | chr3.3:12652238-12652257 | MS.gene039829:intron | 45.0% | |
| ! | AAAATACGGTTTTGCCCCCT+CGG | - | chr3.3:12651355-12651374 | MS.gene039829:intron | 45.0% |
| ! | AAAATACGGTTTTGCCCCCT+CGG | + | chr3.3:12651374-12651355 | None:intergenic | 45.0% |
| ! | ATCGGTCTGCACTGATAATC+CGG | - | chr3.3:12649687-12649706 | MS.gene039829:CDS | 45.0% |
| ! | CAGTCGTGTGTGTGAGTTTT+AGG | - | chr3.3:12650117-12650136 | MS.gene039829:intron | 45.0% |
| ! | TGACGAACAATGATGGAACC+AGG | + | chr3.3:12649809-12649828 | None:intergenic | 45.0% |
| ! | TGTGCAATCTCGCGGATTAA+GGG | - | chr3.3:12650695-12650714 | MS.gene039829:intron | 45.0% |
| ! | TTGTGCAATCTCGCGGATTA+AGG | - | chr3.3:12650694-12650713 | MS.gene039829:intron | 45.0% |
| !!! | TCGTGTGTGTGAGTTTTAGG+TGG | - | chr3.3:12650120-12650139 | MS.gene039829:intron | 45.0% |
| AATGCTCACAAGAAGGGAGC+CGG | - | chr3.3:12649710-12649729 | MS.gene039829:CDS | 50.0% | |
| ACGGCCATTCTTGGTACTTC+CGG | + | chr3.3:12649732-12649751 | None:intergenic | 50.0% | |
| CGTGCATTTCCCCTCTGAAT+AGG | - | chr3.3:12650750-12650769 | MS.gene039829:intron | 50.0% | |
| CTCCCTTCTTGTGAGCATTC+CGG | + | chr3.3:12649709-12649728 | None:intergenic | 50.0% | |
| CTTAACACCAAGACGCCTTC+CGG | + | chr3.3:12649762-12649781 | None:intergenic | 50.0% | |
| GCAGACCGATGATGAATTCG+AGG | + | chr3.3:12649677-12649696 | None:intergenic | 50.0% | |
| GGCACAACTGAGGCACAATT+TGG | - | chr3.3:12650822-12650841 | MS.gene039829:intron | 50.0% | |
| GTATTTGTGGTTGGGGTTGG+GGG | - | chr3.3:12652239-12652258 | MS.gene039829:intron | 50.0% | |
| TACCAAGAATGGCCGTGACT+CGG | - | chr3.3:12649736-12649755 | MS.gene039829:CDS | 50.0% | |
| TCCACGCTGACGAACAATGA+TGG | + | chr3.3:12649816-12649835 | None:intergenic | 50.0% | |
| TCCATCATTGTTCGTCAGCG+TGG | - | chr3.3:12649812-12649831 | MS.gene039829:CDS | 50.0% | |
| TGCTGCCAACATGGTGTACT+TGG | - | chr3.3:12650410-12650429 | MS.gene039829:intron | 50.0% | |
| ! | CCTTGGTAGTTAACTGCAGC+CGG | - | chr3.3:12652023-12652042 | MS.gene039829:intron | 50.0% |
| ! | TCGGAACTGGTTCTTCTCGT+GGG | + | chr3.3:12652618-12652637 | None:intergenic | 50.0% |
| ! | TTCGGAACTGGTTCTTCTCG+TGG | + | chr3.3:12652619-12652638 | None:intergenic | 50.0% |
| ACGGAAGCGAGCATTAGCTG+TGG | + | chr3.3:12652730-12652749 | None:intergenic | 55.0% | |
| ACTCGGCAGTTAACTGCCGA+GGG | - | chr3.3:12652055-12652074 | MS.gene039829:intron | 55.0% | |
| ACTCGGCAGTTAACTGCCGA+GGG | + | chr3.3:12652074-12652055 | None:intergenic | 55.0% | |
| CCGGCTGCAGTTAACTACCA+AGG | + | chr3.3:12652026-12652045 | None:intergenic | 55.0% | |
| CCTCGGTAGTTAACTGCAGC+CGG | + | chr3.3:12651406-12651425 | None:intergenic | 55.0% | |
| CTCACACACACGACTGTGTG+AGG | + | chr3.3:12650113-12650132 | None:intergenic | 55.0% | |
| GGGCCAAACTCAACGACCAA+TGG | - | chr3.3:12650043-12650062 | MS.gene039829:intron | 55.0% | |
| TACTCGGCAGTTAACTGCCG+AGG | - | chr3.3:12652054-12652073 | MS.gene039829:intron | 55.0% | |
| TACTCGGCAGTTAACTGCCG+AGG | + | chr3.3:12652073-12652054 | None:intergenic | 55.0% | |
| TAGCTATCGGGGTTCGGAAC+TGG | + | chr3.3:12652631-12652650 | None:intergenic | 55.0% | |
| TCCTCGGCAGTTAACTACCG+AGG | - | chr3.3:12651996-12652015 | MS.gene039829:intron | 55.0% | |
| TCCTCGGCAGTTAACTACCG+AGG | + | chr3.3:12652015-12651996 | None:intergenic | 55.0% | |
| TCCTCGGTAGTTAACTGCCG+AGG | - | chr3.3:12651429-12651448 | MS.gene039829:intron | 55.0% | |
| TCCTCGGTAGTTAACTGCCG+AGG | + | chr3.3:12651448-12651429 | None:intergenic | 55.0% | |
| TGGAACCAGGTTTAGCGACC+TGG | + | chr3.3:12649796-12649815 | None:intergenic | 55.0% | |
| TGTTCGTCAGCGTGGAACCA+AGG | - | chr3.3:12649820-12649839 | MS.gene039829:intron | 55.0% | |
| ! | GGCATTAAGTGCGCTTTGGG+CGG | - | chr3.3:12650431-12650450 | MS.gene039829:intron | 55.0% |
| !! | CGCGGATTAAGGGTGCTGTT+AGG | - | chr3.3:12650705-12650724 | MS.gene039829:intron | 55.0% |
| !! | CGGAAGGCGTCTTGGTGTTA+AGG | - | chr3.3:12649760-12649779 | MS.gene039829:CDS | 55.0% |
| !! | GGAGCCGGAAGTACCAAGAA+TGG | - | chr3.3:12649725-12649744 | MS.gene039829:CDS | 55.0% |
| CCGGCTGCAGTTAACTACCG+AGG | - | chr3.3:12651403-12651422 | MS.gene039829:intron | 60.0% | |
| CTCGGCAGTTAACTGCCGAG+GGG | - | chr3.3:12651373-12651392 | MS.gene039829:intron | 60.0% | |
| CTCGGCAGTTAACTGCCGAG+GGG | + | chr3.3:12651392-12651373 | None:intergenic | 60.0% | |
| GGTGACCAGGTCGCTAAACC+TGG | - | chr3.3:12649788-12649807 | MS.gene039829:CDS | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | - | chr3.3:12652057-12652076 | MS.gene039829:intron | 60.0% | |
| TCGGCAGTTAACTGCCGAGG+GGG | + | chr3.3:12652076-12652057 | None:intergenic | 60.0% | |
| ! | AAGAATGGCCGTGACTCGGC+CGG | - | chr3.3:12649740-12649759 | MS.gene039829:CDS | 60.0% |
| GGCCGAGTCACGGCCATTCT+TGG | + | chr3.3:12649741-12649760 | None:intergenic | 65.0% | |
| GACGCCTTCCGGCCGAGTCA+CGG | + | chr3.3:12649751-12649770 | None:intergenic | 70.0% | |
| ! | ATGGCCGTGACTCGGCCGGA+AGG | - | chr3.3:12649744-12649763 | MS.gene039829:CDS | 70.0% |
| !! | GACTCGGCCGGAAGGCGTCT+TGG | - | chr3.3:12649752-12649771 | MS.gene039829:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 12649653 | 12652783 | 12649653 | ID=MS.gene039829 |
| chr3.3 | mRNA | 12649653 | 12652783 | 12649653 | ID=MS.gene039829.t1;Parent=MS.gene039829 |
| chr3.3 | exon | 12652595 | 12652783 | 12652595 | ID=MS.gene039829.t1.exon1;Parent=MS.gene039829.t1 |
| chr3.3 | CDS | 12652595 | 12652783 | 12652595 | ID=cds.MS.gene039829.t1;Parent=MS.gene039829.t1 |
| chr3.3 | exon | 12649923 | 12650024 | 12649923 | ID=MS.gene039829.t1.exon2;Parent=MS.gene039829.t1 |
| chr3.3 | CDS | 12649923 | 12650024 | 12649923 | ID=cds.MS.gene039829.t1;Parent=MS.gene039829.t1 |
| chr3.3 | exon | 12649653 | 12649832 | 12649653 | ID=MS.gene039829.t1.exon3;Parent=MS.gene039829.t1 |
| chr3.3 | CDS | 12649653 | 12649832 | 12649653 | ID=cds.MS.gene039829.t1;Parent=MS.gene039829.t1 |
| Gene Sequence |
| Protein sequence |
