Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023966.t1 | XP_003624060.1 | 96.6 | 268 | 9 | 0 | 1 | 268 | 1 | 268 | 3.70E-139 | 504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023966.t1 | O04603 | 69.1 | 262 | 75 | 3 | 4 | 262 | 3 | 261 | 1.3e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023966.t1 | G7L6M1 | 96.6 | 268 | 9 | 0 | 1 | 268 | 1 | 268 | 2.7e-139 | 504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039830 | MS.gene023966 | PPI |
| MS.gene023966 | MS.gene73087 | PPI |
| MS.gene023966 | MS.gene044695 | PPI |
| MS.gene039829 | MS.gene023966 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023966.t1 | MTR_7g078800 | 96.642 | 268 | 9 | 0 | 1 | 268 | 1 | 268 | 0.0 | 537 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023966.t1 | AT4G01310 | 69.084 | 262 | 75 | 3 | 4 | 262 | 3 | 261 | 8.07e-127 | 361 |
Find 66 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTCTACCCTTTGATTT+TGG | 0.123648 | 7.1:-25326209 | None:intergenic |
| GAATTACAACATTGGTATTA+AGG | 0.259700 | 7.1:+25325995 | MS.gene023966:CDS |
| ACAACGAAGAAGAAGAGAAT+TGG | 0.342752 | 7.1:-25323157 | None:intergenic |
| AAAACCAACCTGATGAATAT+TGG | 0.349771 | 7.1:-25323330 | None:intergenic |
| ACCACAATCTTCTTAACTTT+AGG | 0.360933 | 7.1:-25324216 | None:intergenic |
| TCTGTGAAAGCTGATGCTTC+TGG | 0.361039 | 7.1:+25323206 | MS.gene023966:CDS |
| TTGAATATCAGCAGCTTTGA+TGG | 0.369608 | 7.1:+25325966 | MS.gene023966:CDS |
| TCTTCTTCGTTGTTCTCTCA+TGG | 0.377778 | 7.1:+25323167 | MS.gene023966:CDS |
| TCAGCTCTGGGAACACAGTT+TGG | 0.396548 | 7.1:-25326019 | None:intergenic |
| TGATGCTTCTGGTGCTGTAT+TGG | 0.397654 | 7.1:+25323217 | MS.gene023966:CDS |
| TTCCTCGCCCGAGTCTTAAC+AGG | 0.398404 | 7.1:-25324324 | None:intergenic |
| TTGACCTTCCCTGATCTTGA+AGG | 0.406375 | 7.1:-25324358 | None:intergenic |
| CCGTTGCCACCTTCAAGATC+AGG | 0.407745 | 7.1:+25324349 | MS.gene023966:CDS |
| CCTATACCAGATTTCAGCTC+TGG | 0.422499 | 7.1:-25326032 | None:intergenic |
| CAACGAAGAAGAAGAGAATT+GGG | 0.435438 | 7.1:-25323156 | None:intergenic |
| GTGTTCCCAGAGCTGAAATC+TGG | 0.439069 | 7.1:+25326026 | MS.gene023966:CDS |
| CTCCTACACCAATATTCATC+AGG | 0.443040 | 7.1:+25323322 | MS.gene023966:CDS |
| TGCACAAAATGCAAAAGGTT+TGG | 0.451207 | 7.1:+25324260 | MS.gene023966:CDS |
| AGCTCGAAATTGAGAGAGAA+AGG | 0.454415 | 7.1:-25323126 | None:intergenic |
| TGCTTCTGGTGCTGTATTGG+TGG | 0.457226 | 7.1:+25323220 | MS.gene023966:CDS |
| CTTGATCTAGCACTGATCAC+TGG | 0.459647 | 7.1:+25324294 | MS.gene023966:CDS |
| CAGAAGAGTGTAGAAGAGAA+GGG | 0.460397 | 7.1:-25323097 | None:intergenic |
| CTAAGTTGATAACGCGGTCT+AGG | 0.460763 | 7.1:-25325914 | None:intergenic |
| GCAGAAGAGTGTAGAAGAGA+AGG | 0.463128 | 7.1:-25323098 | None:intergenic |
| CCTTGAAAATCTCTTGTCCT+AGG | 0.465103 | 7.1:-25325942 | None:intergenic |
| ATCAGCAGCTTTGATGGGAA+TGG | 0.466511 | 7.1:+25325972 | MS.gene023966:CDS |
| TTATCAACTTAGGACTTCCT+AGG | 0.473041 | 7.1:+25325925 | MS.gene023966:CDS |
| CTAGACCGCGTTATCAACTT+AGG | 0.474580 | 7.1:+25325915 | MS.gene023966:CDS |
| CCAGAGCTGAAATCTGGTAT+AGG | 0.476827 | 7.1:+25326032 | MS.gene023966:CDS |
| ATTGTGGTAAACTGTGGTAT+TGG | 0.479842 | 7.1:+25324231 | MS.gene023966:CDS |
| ATCAGGGAAGGTCAACCACT+TGG | 0.482119 | 7.1:+25324366 | MS.gene023966:CDS |
| TCAGCAGCTTTGATGGGAAT+GGG | 0.496382 | 7.1:+25325973 | MS.gene023966:CDS |
| GAAGCTGCACAAAATGCAAA+AGG | 0.526930 | 7.1:+25324255 | MS.gene023966:CDS |
| AACTTCAACTCCCTCTCTGA+AGG | 0.527309 | 7.1:-25326141 | None:intergenic |
| GAAGAAGAAGAGAATTGGGT+TGG | 0.530860 | 7.1:-25323152 | None:intergenic |
| GATCCAAAATCAAAGGGTAG+AGG | 0.531994 | 7.1:+25326206 | MS.gene023966:CDS |
| TTGATCTAGCACTGATCACT+GGG | 0.532729 | 7.1:+25324295 | MS.gene023966:CDS |
| CCTGATCTTGAAGGTGGCAA+CGG | 0.533580 | 7.1:-25324349 | None:intergenic |
| TGAATATCAGCAGCTTTGAT+GGG | 0.536920 | 7.1:+25325967 | MS.gene023966:CDS |
| CGTTGCCACCTTCAAGATCA+GGG | 0.545237 | 7.1:+25324350 | MS.gene023966:CDS |
| GGCAGAGACCTGTTAAGACT+CGG | 0.549649 | 7.1:+25324316 | MS.gene023966:CDS |
| GGAGAAATCTGAAGCAGAGA+AGG | 0.557353 | 7.1:+25323241 | MS.gene023966:CDS |
| AGAAGAGTGTAGAAGAGAAG+GGG | 0.566918 | 7.1:-25323096 | None:intergenic |
| TATAGGTACACCTAGAGGAA+TGG | 0.575467 | 7.1:+25326049 | MS.gene023966:CDS |
| CTCTCATGGAAACAACAGAC+TGG | 0.584243 | 7.1:+25323181 | MS.gene023966:CDS |
| ACCTTCCCTGATCTTGAAGG+TGG | 0.584511 | 7.1:-25324355 | None:intergenic |
| GAGAATTCTTCCATAAGCAA+AGG | 0.587605 | 7.1:-25323302 | None:intergenic |
| ATGCAGATATCCATTCCTCT+AGG | 0.588286 | 7.1:-25326059 | None:intergenic |
| CTATACCAGATTTCAGCTCT+GGG | 0.594159 | 7.1:-25326031 | None:intergenic |
| TCCTTCTTGATCAGTTCTAG+CGG | 0.602168 | 7.1:-25326090 | None:intergenic |
| ATGGGTATGCCCTTCAGAGA+GGG | 0.602286 | 7.1:+25326131 | MS.gene023966:CDS |
| GCAGAGACCTGTTAAGACTC+GGG | 0.607855 | 7.1:+25324317 | MS.gene023966:CDS |
| AAGAAGATTGTGGTAAACTG+TGG | 0.615390 | 7.1:+25324225 | MS.gene023966:CDS |
| ACTTCAACTCCCTCTCTGAA+GGG | 0.615523 | 7.1:-25326140 | None:intergenic |
| GGGATTGCTGTGACACTCAG+AGG | 0.615781 | 7.1:+25324387 | MS.gene023966:CDS |
| TCAGGGAAGGTCAACCACTT+GGG | 0.616213 | 7.1:+25324367 | MS.gene023966:CDS |
| GCCACCTTCAAGATCAGGGA+AGG | 0.616261 | 7.1:+25324354 | MS.gene023966:CDS |
| GGGAATGGGAATTACAACAT+TGG | 0.626171 | 7.1:+25325987 | MS.gene023966:CDS |
| ACCGCTAGAACTGATCAAGA+AGG | 0.627372 | 7.1:+25326089 | MS.gene023966:CDS |
| GCCTAAAGTTAAGAAGATTG+TGG | 0.634345 | 7.1:+25324215 | MS.gene023966:CDS |
| GACCTGTTAAGACTCGGGCG+AGG | 0.646443 | 7.1:+25324322 | MS.gene023966:CDS |
| AACCTGATGAATATTGGTGT+AGG | 0.659149 | 7.1:-25323324 | None:intergenic |
| CATGGGTATGCCCTTCAGAG+AGG | 0.660728 | 7.1:+25326130 | MS.gene023966:CDS |
| AGTGTCACAGCAATCCCAAG+TGG | 0.690222 | 7.1:-25324381 | None:intergenic |
| TCTGGTATAGGTACACCTAG+AGG | 0.713169 | 7.1:+25326044 | MS.gene023966:CDS |
| GAAGTCCTAAGTTGATAACG+CGG | 0.748246 | 7.1:-25325920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTAAATAGTATAAAAAA+TGG | - | chr7.1:25324510-25324529 | None:intergenic | 10.0% |
| !! | ATTATTCATATTACTTAAAT+AGG | - | chr7.1:25324831-25324850 | None:intergenic | 10.0% |
| !! | TACTAAATAGTATAAAAAAT+GGG | - | chr7.1:25324509-25324528 | None:intergenic | 10.0% |
| !! | ACAAAATAATATTTGATCAT+TGG | - | chr7.1:25325376-25325395 | None:intergenic | 15.0% |
| !! | TAATGCAAAATACTATAATT+TGG | - | chr7.1:25325621-25325640 | None:intergenic | 15.0% |
| !!! | ATTCTTATGGTTTTAAAATA+TGG | - | chr7.1:25325799-25325818 | None:intergenic | 15.0% |
| !! | GCATGTATAATATATTCTTA+TGG | - | chr7.1:25325812-25325831 | None:intergenic | 20.0% |
| !! | GTTAACAAAATATATTCACT+AGG | - | chr7.1:25324450-25324469 | None:intergenic | 20.0% |
| !! | TAAAGATGTTCATAAGATAT+AGG | + | chr7.1:25325103-25325122 | MS.gene023966:intron | 20.0% |
| !! | TATTTGAATATGTTGTCATT+TGG | + | chr7.1:25325545-25325564 | MS.gene023966:intron | 20.0% |
| !!! | AATTTGAAACTAAGTGAATA+AGG | + | chr7.1:25323986-25324005 | MS.gene023966:intron | 20.0% |
| !!! | ATGACATTAAGTTGATAAAT+CGG | + | chr7.1:25323958-25323977 | MS.gene023966:intron | 20.0% |
| !!! | GCATTTTCAAAAATTCATTT+TGG | - | chr7.1:25323890-25323909 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTAGAACAATGT+CGG | + | chr7.1:25324522-25324541 | MS.gene023966:intron | 20.0% |
| !!! | TTTTTTGGTTTTGGTTTAAT+GGG | + | chr7.1:25323444-25323463 | MS.gene023966:intron | 20.0% |
| ! | AAAAATTGTTCCTTTGCTTA+TGG | + | chr7.1:25323292-25323311 | MS.gene023966:CDS | 25.0% |
| ! | CAATGTGATCTAAGTTTAAA+TGG | - | chr7.1:25325077-25325096 | None:intergenic | 25.0% |
| ! | CTCTTTAAGTAGAATCAATT+CGG | + | chr7.1:25323775-25323794 | MS.gene023966:intron | 25.0% |
| ! | GAATTACAACATTGGTATTA+AGG | + | chr7.1:25325995-25326014 | MS.gene023966:CDS | 25.0% |
| ! | TAACACAGGATGTTTAATAT+CGG | + | chr7.1:25325657-25325676 | MS.gene023966:intron | 25.0% |
| ! | TCAAGAAGGACAAAAATTAT+TGG | + | chr7.1:25326103-25326122 | MS.gene023966:CDS | 25.0% |
| ! | TTCATATTACTTAAATAGGC+CGG | - | chr7.1:25324827-25324846 | None:intergenic | 25.0% |
| ! | TTGCAATATCCATAATTTGA+GGG | - | chr7.1:25323514-25323533 | None:intergenic | 25.0% |
| ! | TTTGCAATATCCATAATTTG+AGG | - | chr7.1:25323515-25323534 | None:intergenic | 25.0% |
| !! | AACCAATAGGTATTAGATTT+TGG | - | chr7.1:25325868-25325887 | None:intergenic | 25.0% |
| !! | AATTGATTCTACTTAAAGAG+AGG | - | chr7.1:25323775-25323794 | None:intergenic | 25.0% |
| !! | ACAGTTAAAATTGATTCTAG+AGG | - | chr7.1:25323839-25323858 | None:intergenic | 25.0% |
| !! | ACCAATAGGTATTAGATTTT+GGG | - | chr7.1:25325867-25325886 | None:intergenic | 25.0% |
| !! | ATTCTCTTTTATCTTGAGAA+TGG | + | chr7.1:25325458-25325477 | MS.gene023966:intron | 25.0% |
| !! | TAAAGCCTATTTAGCTTAAA+AGG | + | chr7.1:25324759-25324778 | MS.gene023966:intron | 25.0% |
| !! | TAAGATATAGGCTTTTAAAC+AGG | + | chr7.1:25325115-25325134 | MS.gene023966:intron | 25.0% |
| !!! | AGGTTGGTTTTTGTTAAATT+TGG | + | chr7.1:25323342-25323361 | MS.gene023966:intron | 25.0% |
| !!! | CATTTTGATCCAAAATCAAA+GGG | + | chr7.1:25326200-25326219 | MS.gene023966:CDS | 25.0% |
| !!! | CTTTTTTGGTTTTGGTTTAA+TGG | + | chr7.1:25323443-25323462 | MS.gene023966:intron | 25.0% |
| !!! | GCTTTTTTCTTAAATAGAGA+AGG | + | chr7.1:25324723-25324742 | MS.gene023966:intron | 25.0% |
| !!! | GTAATAGAAAGTGTTTACAT+AGG | + | chr7.1:25325394-25325413 | MS.gene023966:intron | 25.0% |
| !!! | GTTAAAGTTTGAGTCTTTTT+TGG | + | chr7.1:25323429-25323448 | MS.gene023966:intron | 25.0% |
| !!! | TCATTTTGATCCAAAATCAA+AGG | + | chr7.1:25326199-25326218 | MS.gene023966:CDS | 25.0% |
| !!! | TGACATTAAGTTGATAAATC+GGG | + | chr7.1:25323959-25323978 | MS.gene023966:intron | 25.0% |
| !!! | TGATTTTGACTTAAATGAGT+TGG | + | chr7.1:25323656-25323675 | MS.gene023966:intron | 25.0% |
| !!! | TTAGATTCTAGTTAATTTGC+TGG | + | chr7.1:25324565-25324584 | MS.gene023966:intron | 25.0% |
| !!! | TTTGATTTTGCGTTTTTGTT+GGG | + | chr7.1:25323399-25323418 | MS.gene023966:intron | 25.0% |
| !!! | TTTTTGGTTTTGGTTTAATG+GGG | + | chr7.1:25323445-25323464 | MS.gene023966:intron | 25.0% |
| AAAACCAACCTGATGAATAT+TGG | - | chr7.1:25323333-25323352 | None:intergenic | 30.0% | |
| AATTGCTTCAAGTGTATGTT+TGG | + | chr7.1:25323587-25323606 | MS.gene023966:intron | 30.0% | |
| ACCACAATCTTCTTAACTTT+AGG | - | chr7.1:25324219-25324238 | None:intergenic | 30.0% | |
| ACCCAAAATCTAATACCTAT+TGG | + | chr7.1:25325863-25325882 | MS.gene023966:intron | 30.0% | |
| AGGGACTATATTGATACATA+TGG | - | chr7.1:25323495-25323514 | None:intergenic | 30.0% | |
| CAAAATATATTCACTAGGCA+AGG | - | chr7.1:25324445-25324464 | None:intergenic | 30.0% | |
| CAATATAGTCCCTCAAATTA+TGG | + | chr7.1:25323502-25323521 | MS.gene023966:intron | 30.0% | |
| CTCTATTTAAGAAAAAAGCC+TGG | - | chr7.1:25324722-25324741 | None:intergenic | 30.0% | |
| CTTAGAGTAAATACTCAAGT+TGG | - | chr7.1:25324138-25324157 | None:intergenic | 30.0% | |
| TGATAACATGTCTATAGAGA+GGG | + | chr7.1:25324022-25324041 | MS.gene023966:intron | 30.0% | |
| TGTGTAGTATAATGCATCTT+TGG | + | chr7.1:25325293-25325312 | MS.gene023966:intron | 30.0% | |
| ! | AGTTGGTACTCGAAATTAAA+GGG | - | chr7.1:25324121-25324140 | None:intergenic | 30.0% |
| ! | ATAATCAACACGAGGTTTTT+GGG | - | chr7.1:25325013-25325032 | None:intergenic | 30.0% |
| ! | TTGATAACATGTCTATAGAG+AGG | + | chr7.1:25324021-25324040 | MS.gene023966:intron | 30.0% |
| !! | AAGTTGGTACTCGAAATTAA+AGG | - | chr7.1:25324122-25324141 | None:intergenic | 30.0% |
| !! | ACAAAAATTATTGGCTCTCA+TGG | + | chr7.1:25326112-25326131 | MS.gene023966:CDS | 30.0% |
| !! | ATAGGCTTTAAAAAAAGCCT+AGG | - | chr7.1:25324749-25324768 | None:intergenic | 30.0% |
| !! | CAAAAATTATTGGCTCTCAT+GGG | + | chr7.1:25326113-25326132 | MS.gene023966:CDS | 30.0% |
| !! | GACATTAAGTTGATAAATCG+GGG | + | chr7.1:25323960-25323979 | MS.gene023966:intron | 30.0% |
| !! | GTTTGATTTTGCGTTTTTGT+TGG | + | chr7.1:25323398-25323417 | MS.gene023966:intron | 30.0% |
| !! | TATTGTTTTTCCCTCTTTTC+AGG | + | chr7.1:25324191-25324210 | MS.gene023966:intron | 30.0% |
| !!! | GTTTGAGTCTTTTTTGGTTT+TGG | + | chr7.1:25323435-25323454 | MS.gene023966:intron | 30.0% |
| !!! | TAGGTATTAGATTTTGGGTT+CGG | - | chr7.1:25325862-25325881 | None:intergenic | 30.0% |
| !!! | TCATTTTACACGCTTTGTTT+TGG | - | chr7.1:25325439-25325458 | None:intergenic | 30.0% |
| !!! | TTGGACTGTTTTTTTGTGAT+GGG | + | chr7.1:25323361-25323380 | MS.gene023966:intron | 30.0% |
| !!! | TTTGGACTGTTTTTTTGTGA+TGG | + | chr7.1:25323360-25323379 | MS.gene023966:intron | 30.0% |
| !!! | TTTTGACTTAAATGAGTTGG+AGG | + | chr7.1:25323659-25323678 | MS.gene023966:intron | 30.0% |
| AAAAGCCTCTTAAGCCTATT+AGG | + | chr7.1:25324801-25324820 | MS.gene023966:intron | 35.0% | |
| AACCTGATGAATATTGGTGT+AGG | - | chr7.1:25323327-25323346 | None:intergenic | 35.0% | |
| AAGAAGATTGTGGTAAACTG+TGG | + | chr7.1:25324225-25324244 | MS.gene023966:CDS | 35.0% | |
| ACAACGAAGAAGAAGAGAAT+TGG | - | chr7.1:25323160-25323179 | None:intergenic | 35.0% | |
| ACATCCTGTGTTAGAATATG+AGG | - | chr7.1:25325650-25325669 | None:intergenic | 35.0% | |
| ACTTGAAGCAATTCAACAGA+GGG | - | chr7.1:25323580-25323599 | None:intergenic | 35.0% | |
| ATTGTGGTAAACTGTGGTAT+TGG | + | chr7.1:25324231-25324250 | MS.gene023966:CDS | 35.0% | |
| CAACGAAGAAGAAGAGAATT+GGG | - | chr7.1:25323159-25323178 | None:intergenic | 35.0% | |
| CATAAAAAACCTGGATGTTG+CGG | + | chr7.1:25325753-25325772 | MS.gene023966:intron | 35.0% | |
| CCTCTCCATTTGTATTTGTA+GGG | + | chr7.1:25323929-25323948 | MS.gene023966:intron | 35.0% | |
| CTAGTCCCTACAAATACAAA+TGG | - | chr7.1:25323937-25323956 | None:intergenic | 35.0% | |
| GAGAATTCTTCCATAAGCAA+AGG | - | chr7.1:25323305-25323324 | None:intergenic | 35.0% | |
| GAGACATCACATAAAAAACC+TGG | + | chr7.1:25325744-25325763 | MS.gene023966:intron | 35.0% | |
| GCCTAAAGTTAAGAAGATTG+TGG | + | chr7.1:25324215-25324234 | MS.gene023966:CDS | 35.0% | |
| GGTTCTATGTTGACAAGAAT+TGG | + | chr7.1:25323608-25323627 | MS.gene023966:intron | 35.0% | |
| TACACCAATATTCATCAGGT+TGG | + | chr7.1:25323326-25323345 | MS.gene023966:intron | 35.0% | |
| TCCTCTCCATTTGTATTTGT+AGG | + | chr7.1:25323928-25323947 | MS.gene023966:intron | 35.0% | |
| TCTGTCGAATATCAACCAAT+AGG | - | chr7.1:25325881-25325900 | None:intergenic | 35.0% | |
| TGCACAAAATGCAAAAGGTT+TGG | + | chr7.1:25324260-25324279 | MS.gene023966:CDS | 35.0% | |
| TTAAGTAGAATCAATTCGGC+AGG | + | chr7.1:25323779-25323798 | MS.gene023966:intron | 35.0% | |
| TTAGCCTCATATTCTAACAC+AGG | + | chr7.1:25325643-25325662 | MS.gene023966:intron | 35.0% | |
| TTATCAACTTAGGACTTCCT+AGG | + | chr7.1:25325925-25325944 | MS.gene023966:CDS | 35.0% | |
| TTCTTAAATAGAGAAGGCCT+AGG | + | chr7.1:25324729-25324748 | MS.gene023966:intron | 35.0% | |
| ! | ACTTCTTTTTGCGAACTACT+TGG | - | chr7.1:25326169-25326188 | None:intergenic | 35.0% |
| ! | CTTCTTTTTGCGAACTACTT+GGG | - | chr7.1:25326168-25326187 | None:intergenic | 35.0% |
| ! | GAGGTAAAGTGATTTGTGTT+CGG | + | chr7.1:25323678-25323697 | MS.gene023966:intron | 35.0% |
| ! | GATAATCAACACGAGGTTTT+TGG | - | chr7.1:25325014-25325033 | None:intergenic | 35.0% |
| ! | GGATGTTTAATATCGGTTAG+CGG | + | chr7.1:25325664-25325683 | MS.gene023966:intron | 35.0% |
| ! | TGAATATCAGCAGCTTTGAT+GGG | + | chr7.1:25325967-25325986 | MS.gene023966:CDS | 35.0% |
| ! | TGGATCACATGTAAGCTTTT+TGG | + | chr7.1:25325313-25325332 | MS.gene023966:intron | 35.0% |
| ! | TTGAATATCAGCAGCTTTGA+TGG | + | chr7.1:25325966-25325985 | MS.gene023966:CDS | 35.0% |
| ! | TTTGAGATTGCGGAAAATTG+AGG | + | chr7.1:25325706-25325725 | MS.gene023966:intron | 35.0% |
| !! | CTCTTTTGATAATCAACACG+AGG | - | chr7.1:25325021-25325040 | None:intergenic | 35.0% |
| !!! | ACATGTAAGCTTTTTGGAGT+TGG | + | chr7.1:25325319-25325338 | MS.gene023966:intron | 35.0% |
| !!! | CATGTAAGCTTTTTGGAGTT+GGG | + | chr7.1:25325320-25325339 | MS.gene023966:intron | 35.0% |
| AAATGTCTTGGAGTTAGGGA+TGG | - | chr7.1:25325255-25325274 | None:intergenic | 40.0% | |
| AACATGTCTATAGAGAGGGA+TGG | + | chr7.1:25324026-25324045 | MS.gene023966:intron | 40.0% | |
| AACTTTAGGCACCTGAAAAG+AGG | - | chr7.1:25324205-25324224 | None:intergenic | 40.0% | |
| AATGTCTTGGAGTTAGGGAT+GGG | - | chr7.1:25325254-25325273 | None:intergenic | 40.0% | |
| ACTTTAGGCACCTGAAAAGA+GGG | - | chr7.1:25324204-25324223 | None:intergenic | 40.0% | |
| AGCCAAATGTCTTGGAGTTA+GGG | - | chr7.1:25325259-25325278 | None:intergenic | 40.0% | |
| AGCTCGAAATTGAGAGAGAA+AGG | - | chr7.1:25323129-25323148 | None:intergenic | 40.0% | |
| ATCCCTAACTCCAAGACATT+TGG | + | chr7.1:25325254-25325273 | MS.gene023966:intron | 40.0% | |
| ATGCAGATATCCATTCCTCT+AGG | - | chr7.1:25326062-25326081 | None:intergenic | 40.0% | |
| CAAACAGTAGCCAAATGTCT+TGG | - | chr7.1:25325267-25325286 | None:intergenic | 40.0% | |
| CACTTGAAGCAATTCAACAG+AGG | - | chr7.1:25323581-25323600 | None:intergenic | 40.0% | |
| CCCTACAAATACAAATGGAG+AGG | - | chr7.1:25323932-25323951 | None:intergenic | 40.0% | |
| CCTTGAAAATCTCTTGTCCT+AGG | - | chr7.1:25325945-25325964 | None:intergenic | 40.0% | |
| CGGAAAATTGAGGTCAAACA+CGG | + | chr7.1:25325716-25325735 | MS.gene023966:intron | 40.0% | |
| CTAAAAAGTAGGCCTATGAC+AGG | + | chr7.1:25325179-25325198 | MS.gene023966:intron | 40.0% | |
| CTATACCAGATTTCAGCTCT+GGG | - | chr7.1:25326034-25326053 | None:intergenic | 40.0% | |
| CTCCTACACCAATATTCATC+AGG | + | chr7.1:25323322-25323341 | MS.gene023966:CDS | 40.0% | |
| GAAGAAGAAGAGAATTGGGT+TGG | - | chr7.1:25323155-25323174 | None:intergenic | 40.0% | |
| GAAGCTGCACAAAATGCAAA+AGG | + | chr7.1:25324255-25324274 | MS.gene023966:CDS | 40.0% | |
| GATCCAAAATCAAAGGGTAG+AGG | + | chr7.1:25326206-25326225 | MS.gene023966:CDS | 40.0% | |
| GCTGGTATAGTTAGATGCAT+TGG | + | chr7.1:25324583-25324602 | MS.gene023966:intron | 40.0% | |
| GGGAATGGGAATTACAACAT+TGG | + | chr7.1:25325987-25326006 | MS.gene023966:CDS | 40.0% | |
| TAGCCAAATGTCTTGGAGTT+AGG | - | chr7.1:25325260-25325279 | None:intergenic | 40.0% | |
| TATAGGTACACCTAGAGGAA+TGG | + | chr7.1:25326049-25326068 | MS.gene023966:CDS | 40.0% | |
| TCTTCTTCGTTGTTCTCTCA+TGG | + | chr7.1:25323167-25323186 | MS.gene023966:CDS | 40.0% | |
| TTTAAGAAAAAAGCCTGGCC+TGG | - | chr7.1:25324717-25324736 | None:intergenic | 40.0% | |
| ! | AGAAGAGTGTAGAAGAGAAG+GGG | - | chr7.1:25323099-25323118 | None:intergenic | 40.0% |
| ! | CAGAAGAGTGTAGAAGAGAA+GGG | - | chr7.1:25323100-25323119 | None:intergenic | 40.0% |
| ! | CCTAGGACAAGAGATTTTCA+AGG | + | chr7.1:25325942-25325961 | MS.gene023966:CDS | 40.0% |
| ! | CCTATTTAGCTTAAAAGGCC+AGG | + | chr7.1:25324764-25324783 | MS.gene023966:intron | 40.0% |
| ! | TCCTTCTTGATCAGTTCTAG+CGG | - | chr7.1:25326093-25326112 | None:intergenic | 40.0% |
| ! | TGCGTTTTTGTTGGGTTTGT+GGG | + | chr7.1:25323407-25323426 | MS.gene023966:intron | 40.0% |
| ! | TTGCGTTTTTGTTGGGTTTG+TGG | + | chr7.1:25323406-25323425 | MS.gene023966:intron | 40.0% |
| !! | CCTGGCCTTTTAAGCTAAAT+AGG | - | chr7.1:25324767-25324786 | None:intergenic | 40.0% |
| !! | GAAGTCCTAAGTTGATAACG+CGG | - | chr7.1:25325923-25325942 | None:intergenic | 40.0% |
| !! | TCTCCTCTACCCTTTGATTT+TGG | - | chr7.1:25326212-25326231 | None:intergenic | 40.0% |
| !! | TTGATCTAGCACTGATCACT+GGG | + | chr7.1:25324295-25324314 | MS.gene023966:CDS | 40.0% |
| !!! | ACACGCTTTGTTTTGGTATG+TGG | - | chr7.1:25325432-25325451 | None:intergenic | 40.0% |
| !!! | CACGCTTTGTTTTGGTATGT+GGG | - | chr7.1:25325431-25325450 | None:intergenic | 40.0% |
| !!! | CTGTCATAGGCCTACTTTTT+AGG | - | chr7.1:25325181-25325200 | None:intergenic | 40.0% |
| AAAATATGGTCTGCAGACCG+TGG | - | chr7.1:25325785-25325804 | None:intergenic | 45.0% | |
| AACTTCAACTCCCTCTCTGA+AGG | - | chr7.1:25326144-25326163 | None:intergenic | 45.0% | |
| ACCGCTAGAACTGATCAAGA+AGG | + | chr7.1:25326089-25326108 | MS.gene023966:CDS | 45.0% | |
| ACTTCAACTCCCTCTCTGAA+GGG | - | chr7.1:25326143-25326162 | None:intergenic | 45.0% | |
| AGACTACTCCAAGTAGGGAT+GGG | + | chr7.1:25324643-25324662 | MS.gene023966:intron | 45.0% | |
| ATTGAGGTCAAACACGGTTG+TGG | + | chr7.1:25325722-25325741 | MS.gene023966:intron | 45.0% | |
| CAAGGAGACTACTCCAAGTA+GGG | + | chr7.1:25324638-25324657 | MS.gene023966:intron | 45.0% | |
| CCAGAGCTGAAATCTGGTAT+AGG | + | chr7.1:25326032-25326051 | MS.gene023966:CDS | 45.0% | |
| CCTATACCAGATTTCAGCTC+TGG | - | chr7.1:25326035-25326054 | None:intergenic | 45.0% | |
| CTAGACCGCGTTATCAACTT+AGG | + | chr7.1:25325915-25325934 | MS.gene023966:CDS | 45.0% | |
| CTCTCATGGAAACAACAGAC+TGG | + | chr7.1:25323181-25323200 | MS.gene023966:CDS | 45.0% | |
| CTTAAATAGGCCGGCCTAAT+AGG | - | chr7.1:25324818-25324837 | None:intergenic | 45.0% | |
| TATCAGGCTTTCAGAAGGTC+AGG | + | chr7.1:25325149-25325168 | MS.gene023966:intron | 45.0% | |
| TCAAGGAGACTACTCCAAGT+AGG | + | chr7.1:25324637-25324656 | MS.gene023966:intron | 45.0% | |
| TCTGGTATAGGTACACCTAG+AGG | + | chr7.1:25326044-25326063 | MS.gene023966:CDS | 45.0% | |
| TCTGTGAAAGCTGATGCTTC+TGG | + | chr7.1:25323206-25323225 | MS.gene023966:CDS | 45.0% | |
| TTGACCTTCCCTGATCTTGA+AGG | - | chr7.1:25324361-25324380 | None:intergenic | 45.0% | |
| TTGGAGTTAGGGATGGGAAT+AGG | - | chr7.1:25325248-25325267 | None:intergenic | 45.0% | |
| ! | AGGCTTTTAAACAGGCTAGC+AGG | + | chr7.1:25325123-25325142 | MS.gene023966:intron | 45.0% |
| ! | ATCAGCAGCTTTGATGGGAA+TGG | + | chr7.1:25325972-25325991 | MS.gene023966:CDS | 45.0% |
| ! | ATGAACTCTGATAAGCGCTG+AGG | + | chr7.1:25324610-25324629 | MS.gene023966:intron | 45.0% |
| ! | GACCTTCTGAAAGCCTGATA+CGG | - | chr7.1:25325149-25325168 | None:intergenic | 45.0% |
| ! | GCAGAAGAGTGTAGAAGAGA+AGG | - | chr7.1:25323101-25323120 | None:intergenic | 45.0% |
| ! | GGAGAAATCTGAAGCAGAGA+AGG | + | chr7.1:25323241-25323260 | MS.gene023966:CDS | 45.0% |
| ! | TCAGCAGCTTTGATGGGAAT+GGG | + | chr7.1:25325973-25325992 | MS.gene023966:CDS | 45.0% |
| ! | TTAATATCGGTTAGCGGCTG+TGG | + | chr7.1:25325670-25325689 | MS.gene023966:intron | 45.0% |
| !! | CTAAGTTGATAACGCGGTCT+AGG | - | chr7.1:25325917-25325936 | None:intergenic | 45.0% |
| !! | CTTCGCGATCTTTGAGATTG+CGG | + | chr7.1:25325696-25325715 | MS.gene023966:intron | 45.0% |
| !! | CTTGATCTAGCACTGATCAC+TGG | + | chr7.1:25324294-25324313 | MS.gene023966:CDS | 45.0% |
| !! | GGCTTAAGAGGCTTTTTGAG+AGG | - | chr7.1:25324797-25324816 | None:intergenic | 45.0% |
| !! | TGATGCTTCTGGTGCTGTAT+TGG | + | chr7.1:25323217-25323236 | MS.gene023966:CDS | 45.0% |
| ACCTTCCCTGATCTTGAAGG+TGG | - | chr7.1:25324358-25324377 | None:intergenic | 50.0% | |
| AGCTTAAAAGGCCAGGCCAT+AGG | + | chr7.1:25324771-25324790 | MS.gene023966:intron | 50.0% | |
| AGTGTCACAGCAATCCCAAG+TGG | - | chr7.1:25324384-25324403 | None:intergenic | 50.0% | |
| ATCAGGGAAGGTCAACCACT+TGG | + | chr7.1:25324366-25324385 | MS.gene023966:CDS | 50.0% | |
| ATGGGTATGCCCTTCAGAGA+GGG | + | chr7.1:25326131-25326150 | MS.gene023966:CDS | 50.0% | |
| CAGGCTCAGGCCTAAAAAGT+AGG | + | chr7.1:25325168-25325187 | MS.gene023966:intron | 50.0% | |
| CCTGATCTTGAAGGTGGCAA+CGG | - | chr7.1:25324352-25324371 | None:intergenic | 50.0% | |
| CGTTGCCACCTTCAAGATCA+GGG | + | chr7.1:25324350-25324369 | MS.gene023966:CDS | 50.0% | |
| CTCCAAGTAGGGATGGGAAT+AGG | + | chr7.1:25324649-25324668 | MS.gene023966:intron | 50.0% | |
| GAGACTACTCCAAGTAGGGA+TGG | + | chr7.1:25324642-25324661 | MS.gene023966:intron | 50.0% | |
| GCAGAGACCTGTTAAGACTC+GGG | + | chr7.1:25324317-25324336 | MS.gene023966:CDS | 50.0% | |
| GCCTCTTAAGCCTATTAGGC+CGG | + | chr7.1:25324805-25324824 | MS.gene023966:intron | 50.0% | |
| GGCAGAGACCTGTTAAGACT+CGG | + | chr7.1:25324316-25324335 | MS.gene023966:CDS | 50.0% | |
| GTGTTCCCAGAGCTGAAATC+TGG | + | chr7.1:25326026-25326045 | MS.gene023966:CDS | 50.0% | |
| GTTAGGGATGGGAATAGGCT+AGG | - | chr7.1:25325243-25325262 | None:intergenic | 50.0% | |
| TCAGGGAAGGTCAACCACTT+GGG | + | chr7.1:25324367-25324386 | MS.gene023966:CDS | 50.0% | |
| !! | GAGGCTTTTTGAGAGGCCTA+TGG | - | chr7.1:25324790-25324809 | None:intergenic | 50.0% |
| !! | TCAGCTCTGGGAACACAGTT+TGG | - | chr7.1:25326022-25326041 | None:intergenic | 50.0% |
| !! | TGCTTCTGGTGCTGTATTGG+TGG | + | chr7.1:25323220-25323239 | MS.gene023966:CDS | 50.0% |
| !! | TTTTTGAGAGGCCTATGGCC+TGG | - | chr7.1:25324785-25324804 | None:intergenic | 50.0% |
| AGGCCTTGCAAAGCCTAGCT+CGG | + | chr7.1:25325217-25325236 | MS.gene023966:intron | 55.0% | |
| CATGGGTATGCCCTTCAGAG+AGG | + | chr7.1:25326130-25326149 | MS.gene023966:CDS | 55.0% | |
| CCGTTGCCACCTTCAAGATC+AGG | + | chr7.1:25324349-25324368 | MS.gene023966:CDS | 55.0% | |
| GCCACCTTCAAGATCAGGGA+AGG | + | chr7.1:25324354-25324373 | MS.gene023966:CDS | 55.0% | |
| GCCGGCCTAATAGGCTTAAG+AGG | - | chr7.1:25324809-25324828 | None:intergenic | 55.0% | |
| GCTTTCAGAAGGTCAGGCTC+AGG | + | chr7.1:25325155-25325174 | MS.gene023966:intron | 55.0% | |
| GGCCGTATCAGGCTTTCAGA+AGG | + | chr7.1:25325144-25325163 | MS.gene023966:intron | 55.0% | |
| GGCCTATTCCCATCCCTACT+TGG | - | chr7.1:25324654-25324673 | None:intergenic | 55.0% | |
| GGGATTGCTGTGACACTCAG+AGG | + | chr7.1:25324387-25324406 | MS.gene023966:CDS | 55.0% | |
| TTCCTCGCCCGAGTCTTAAC+AGG | - | chr7.1:25324327-25324346 | None:intergenic | 55.0% | |
| !! | ATAAGCGCTGAGGCGCTTCA+AGG | + | chr7.1:25324620-25324639 | MS.gene023966:intron | 55.0% |
| AATAGGCCAGACCGGCCTAC+AGG | + | chr7.1:25324666-25324685 | MS.gene023966:intron | 60.0% | |
| ACAGGCTAGCAGGCCGTATC+AGG | + | chr7.1:25325133-25325152 | MS.gene023966:intron | 60.0% | |
| AGGCCGAGCTAGGCTTTGCA+AGG | - | chr7.1:25325223-25325242 | None:intergenic | 60.0% | |
| ATAGGCCAGACCGGCCTACA+GGG | + | chr7.1:25324667-25324686 | MS.gene023966:intron | 60.0% | |
| GACCTGTTAAGACTCGGGCG+AGG | + | chr7.1:25324322-25324341 | MS.gene023966:CDS | 60.0% | |
| GGAATAGGCTAGGCCGAGCT+AGG | - | chr7.1:25325233-25325252 | None:intergenic | 60.0% | |
| GGCTTTGCAAGGCCTAAGCC+TGG | - | chr7.1:25325212-25325231 | None:intergenic | 60.0% | |
| GGGATGGGAATAGGCCAGAC+CGG | + | chr7.1:25324658-25324677 | MS.gene023966:intron | 60.0% | |
| CAAGGCCTAAGCCTGGCCTG+CGG | - | chr7.1:25325205-25325224 | None:intergenic | 65.0% | |
| CCTACGGCCTAGCCTACGAC+AGG | + | chr7.1:25324691-25324710 | MS.gene023966:intron | 65.0% | |
| CCTGTCGTAGGCTAGGCCGT+AGG | - | chr7.1:25324694-25324713 | None:intergenic | 65.0% | |
| GGATGTTGCGGCCACAGCCA+CGG | + | chr7.1:25325765-25325784 | MS.gene023966:intron | 65.0% | |
| GTAGGCCTATGACAGGCCGC+AGG | + | chr7.1:25325186-25325205 | MS.gene023966:intron | 65.0% | |
| TAGGCCAGACCGGCCTACAG+GGG | + | chr7.1:25324668-25324687 | MS.gene023966:intron | 65.0% | |
| TGGCTGTGGCCGCAACATCC+AGG | - | chr7.1:25325765-25325784 | None:intergenic | 65.0% | |
| TGGTCTGCAGACCGTGGCTG+TGG | - | chr7.1:25325779-25325798 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGCCAGGCTT+AGG | + | chr7.1:25325197-25325216 | MS.gene023966:intron | 70.0% | |
| AGCCTACGACAGGCCAGGCC+AGG | + | chr7.1:25324701-25324720 | MS.gene023966:intron | 70.0% | |
| AGCCTGGCCTGGCCTGTCGT+AGG | - | chr7.1:25324706-25324725 | None:intergenic | 70.0% | |
| CCTATGACAGGCCGCAGGCC+AGG | + | chr7.1:25325191-25325210 | MS.gene023966:intron | 70.0% | |
| CCTGGCCTGCGGCCTGTCAT+AGG | - | chr7.1:25325194-25325213 | None:intergenic | 70.0% | |
| GACCGGCCTACAGGGGCCTA+CGG | + | chr7.1:25324675-25324694 | MS.gene023966:intron | 70.0% | |
| GCTAGGCCGTAGGCCCCTGT+AGG | - | chr7.1:25324684-25324703 | None:intergenic | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | + | chr7.1:25324696-25324715 | MS.gene023966:intron | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | - | chr7.1:25324701-25324720 | None:intergenic | 70.0% | |
| TAGGCCCCTGTAGGCCGGTC+TGG | - | chr7.1:25324675-25324694 | None:intergenic | 70.0% | |
| GGCCGTAGGCCCCTGTAGGC+CGG | - | chr7.1:25324680-25324699 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 25323086 | 25326247 | 25323086 | ID=MS.gene023966 |
| chr7.1 | mRNA | 25323086 | 25326247 | 25323086 | ID=MS.gene023966.t1;Parent=MS.gene023966 |
| chr7.1 | exon | 25323086 | 25323343 | 25323086 | ID=MS.gene023966.t1.exon1;Parent=MS.gene023966.t1 |
| chr7.1 | CDS | 25323086 | 25323343 | 25323086 | ID=cds.MS.gene023966.t1;Parent=MS.gene023966.t1 |
| chr7.1 | exon | 25324213 | 25324413 | 25324213 | ID=MS.gene023966.t1.exon2;Parent=MS.gene023966.t1 |
| chr7.1 | CDS | 25324213 | 25324413 | 25324213 | ID=cds.MS.gene023966.t1;Parent=MS.gene023966.t1 |
| chr7.1 | exon | 25325900 | 25326247 | 25325900 | ID=MS.gene023966.t1.exon3;Parent=MS.gene023966.t1 |
| chr7.1 | CDS | 25325900 | 25326247 | 25325900 | ID=cds.MS.gene023966.t1;Parent=MS.gene023966.t1 |
| Gene Sequence |
| Protein sequence |
