Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024170.t1 | XP_003624347.1 | 92.5 | 253 | 14 | 3 | 1 | 250 | 1 | 251 | 1.00E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024170.t1 | Q9LF14 | 77.0 | 204 | 47 | 0 | 47 | 250 | 37 | 240 | 1.2e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024170.t1 | G7KUB5 | 92.5 | 253 | 14 | 3 | 1 | 250 | 1 | 251 | 7.5e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08762 | MS.gene024170 | PPI |
| MS.gene024170 | MS.gene55353 | PPI |
| MS.gene024170 | MS.gene53154 | PPI |
| MS.gene024170 | MS.gene023541 | PPI |
| MS.gene78610 | MS.gene024170 | PPI |
| MS.gene024170 | MS.gene85927 | PPI |
| MS.gene024170 | MS.gene09080 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024170.t1 | MTR_7g082240 | 92.490 | 253 | 14 | 3 | 1 | 250 | 1 | 251 | 3.31e-169 | 467 |
| MS.gene024170.t1 | MTR_8g095500 | 88.608 | 237 | 19 | 3 | 14 | 250 | 15 | 243 | 1.93e-149 | 417 |
| MS.gene024170.t1 | MTR_8g085910 | 59.694 | 196 | 79 | 0 | 55 | 250 | 17 | 212 | 1.89e-84 | 251 |
| MS.gene024170.t1 | MTR_8g103890 | 51.759 | 199 | 96 | 0 | 48 | 246 | 57 | 255 | 2.69e-76 | 232 |
| MS.gene024170.t1 | MTR_8g103890 | 58.571 | 140 | 58 | 0 | 48 | 187 | 57 | 196 | 8.15e-59 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024170.t1 | AT5G16140 | 76.961 | 204 | 47 | 0 | 47 | 250 | 37 | 240 | 1.18e-119 | 341 |
| MS.gene024170.t1 | AT5G16140 | 76.961 | 204 | 47 | 0 | 47 | 250 | 37 | 240 | 1.18e-119 | 341 |
| MS.gene024170.t1 | AT5G38290 | 64.400 | 250 | 85 | 2 | 1 | 250 | 5 | 250 | 1.03e-115 | 332 |
| MS.gene024170.t1 | AT5G38290 | 64.400 | 250 | 85 | 2 | 1 | 250 | 1 | 246 | 1.71e-115 | 331 |
| MS.gene024170.t1 | AT5G19830 | 57.868 | 197 | 83 | 0 | 53 | 249 | 16 | 212 | 4.97e-82 | 245 |
| MS.gene024170.t1 | AT1G18440 | 56.452 | 186 | 81 | 0 | 55 | 240 | 94 | 279 | 2.24e-79 | 241 |
| MS.gene024170.t1 | AT1G18440 | 62.857 | 105 | 39 | 0 | 55 | 159 | 94 | 198 | 6.55e-46 | 153 |
Find 60 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAAACCCTCCTGGAACTA+TGG | 0.238093 | 7.1:+22550057 | MS.gene024170:CDS |
| TTGATATGTACAGGTTCTAT+TGG | 0.279222 | 7.1:+22548927 | MS.gene024170:intron |
| CATGTCAATAGATTCAATTT+AGG | 0.292948 | 7.1:+22550582 | MS.gene024170:CDS |
| ATGTCAATAGATTCAATTTA+GGG | 0.304320 | 7.1:+22550583 | MS.gene024170:CDS |
| GTGCCATGGTATTTATTTCC+AGG | 0.314037 | 7.1:-22548493 | None:intergenic |
| TCCTTGGCTTGTTGTTGGCT+TGG | 0.320294 | 7.1:+22548465 | MS.gene024170:CDS |
| TGATGCCCATGTCCACCTTT+AGG | 0.328247 | 7.1:-22549399 | None:intergenic |
| CCTTGGCTTGTTGTTGGCTT+GGG | 0.334876 | 7.1:+22548466 | MS.gene024170:CDS |
| TGAAGCTTTAAAACACCATT+TGG | 0.358207 | 7.1:-22549375 | None:intergenic |
| CTTTAACCTATCCCAGTAGA+AGG | 0.376903 | 7.1:+22548335 | MS.gene024170:CDS |
| AAATACTTACCACTAGAATA+TGG | 0.382387 | 7.1:-22549248 | None:intergenic |
| TGAGGTTTCGCCAACAAAAC+TGG | 0.384292 | 7.1:-22548957 | None:intergenic |
| CTAAAATTCATGTATGTTTG+AGG | 0.385508 | 7.1:-22548975 | None:intergenic |
| GCTCTTAAATCCATAGTTCC+AGG | 0.394847 | 7.1:-22550067 | None:intergenic |
| TATACTCCTTGGCTTGTTGT+TGG | 0.402188 | 7.1:+22548460 | MS.gene024170:CDS |
| AAATAATTGATAGTCTTTCT+CGG | 0.408351 | 7.1:+22548767 | MS.gene024170:CDS |
| ATGGCAGGTTGATGAGTCAT+TGG | 0.410508 | 7.1:+22550509 | MS.gene024170:intron |
| ATAATGAAAGTTCCTTCTAC+TGG | 0.425882 | 7.1:-22548347 | None:intergenic |
| ATACAATCAAAAGCCTTGAT+TGG | 0.428178 | 7.1:+22548814 | MS.gene024170:CDS |
| TTAAGACCTTAGTGCTCAAT+GGG | 0.429285 | 7.1:+22550550 | MS.gene024170:CDS |
| TCAAAAGCCTTGATTGGAAT+AGG | 0.438540 | 7.1:+22548820 | MS.gene024170:CDS |
| GTTAAGACCTTAGTGCTCAA+TGG | 0.445730 | 7.1:+22550549 | MS.gene024170:CDS |
| AATTGAATCTATTGACATGA+TGG | 0.460838 | 7.1:-22550578 | None:intergenic |
| GTAGGAATCGGAAACCCTCC+TGG | 0.472720 | 7.1:+22550049 | MS.gene024170:intron |
| AAAGTTCCTTCTACTGGGAT+AGG | 0.473181 | 7.1:-22548341 | None:intergenic |
| TGCCATGGTATTTATTTCCA+GGG | 0.492429 | 7.1:-22548492 | None:intergenic |
| CTTCAACCTAAAGGTGGACA+TGG | 0.505877 | 7.1:+22549393 | MS.gene024170:CDS |
| TCTACAAAAGTTCAGTTCAG+TGG | 0.508418 | 7.1:+22550096 | MS.gene024170:CDS |
| CAGTTCAGTGGAAAGAAAGC+AGG | 0.510677 | 7.1:+22550108 | MS.gene024170:CDS |
| GTGGACATGGGCATCACAAT+GGG | 0.516901 | 7.1:+22549406 | MS.gene024170:CDS |
| CAATGGAGATACTAATAAAG+TGG | 0.520031 | 7.1:+22548435 | MS.gene024170:CDS |
| GGATAGGTTAAAGATAAGGT+TGG | 0.522902 | 7.1:-22548325 | None:intergenic |
| ACTGGGATAGGTTAAAGATA+AGG | 0.523092 | 7.1:-22548329 | None:intergenic |
| GTTGTTGGCTTGGGTAACCC+TGG | 0.525883 | 7.1:+22548475 | MS.gene024170:CDS |
| ATAAAGTGGAATATACTCCT+TGG | 0.537329 | 7.1:+22548449 | MS.gene024170:CDS |
| GCACGCACCTATTCCAATCA+AGG | 0.543862 | 7.1:-22548827 | None:intergenic |
| AATGTGATTGGCCATTTGGA+TGG | 0.549742 | 7.1:+22549911 | MS.gene024170:CDS |
| GATAGTCTTTCTCGGTCAGA+AGG | 0.550469 | 7.1:+22548775 | MS.gene024170:CDS |
| TCTCCATTGTTATTTGTCTG+TGG | 0.553915 | 7.1:-22548421 | None:intergenic |
| GCTTTAAAACACCATTTGGA+AGG | 0.554239 | 7.1:-22549371 | None:intergenic |
| GATGAAACTAGCCTTCCAAA+TGG | 0.554723 | 7.1:+22549360 | MS.gene024170:CDS |
| GTTAAACCCATTGAGCACTA+AGG | 0.557059 | 7.1:-22550556 | None:intergenic |
| CTGTGGAACCGAACAATGAA+CGG | 0.565610 | 7.1:-22548404 | None:intergenic |
| TAATGAAAGTTCCTTCTACT+GGG | 0.572140 | 7.1:-22548346 | None:intergenic |
| TTAAAGCTTCAACCTAAAGG+TGG | 0.579023 | 7.1:+22549387 | MS.gene024170:CDS |
| GGTGGACATGGGCATCACAA+TGG | 0.579435 | 7.1:+22549405 | MS.gene024170:CDS |
| AATCACGAGAACCATCCAAA+TGG | 0.582644 | 7.1:-22549922 | None:intergenic |
| CCCAAGCCAACAACAAGCCA+AGG | 0.596759 | 7.1:-22548466 | None:intergenic |
| TACCACTAGAATATGGCGCA+AGG | 0.599906 | 7.1:-22549241 | None:intergenic |
| ACTCGATAATATGCAGCAAG+AGG | 0.600246 | 7.1:-22549216 | None:intergenic |
| TTACATTGTGTCTAGTGCCA+TGG | 0.610008 | 7.1:-22548507 | None:intergenic |
| TTAAATCCATAGTTCCAGGA+GGG | 0.631727 | 7.1:-22550063 | None:intergenic |
| AACTAACCGATTGCAAGTCG+AGG | 0.636266 | 7.1:-22549947 | None:intergenic |
| GTTGATGAGTCATTGGAGCA+AGG | 0.639313 | 7.1:+22550516 | MS.gene024170:CDS |
| GCCCTTGCGCCATATTCTAG+TGG | 0.639540 | 7.1:+22549239 | MS.gene024170:CDS |
| TTCAACCTAAAGGTGGACAT+GGG | 0.647848 | 7.1:+22549394 | MS.gene024170:CDS |
| AACCCTGGAAATAAATACCA+TGG | 0.650251 | 7.1:+22548490 | MS.gene024170:CDS |
| ACCACTAGAATATGGCGCAA+GGG | 0.651637 | 7.1:-22549240 | None:intergenic |
| GTTCCACAGACAAATAACAA+TGG | 0.675048 | 7.1:+22548418 | MS.gene024170:CDS |
| CTTAAATCCATAGTTCCAGG+AGG | 0.685463 | 7.1:-22550064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAGAAAACAGTAT+TGG | - | chr7.1:22550484-22550503 | None:intergenic | 15.0% |
| !! | ATCAATTCAAATACAAAAAA+AGG | - | chr7.1:22550460-22550479 | None:intergenic | 15.0% |
| !! | CAATAATTAAAACAAATGAA+TGG | - | chr7.1:22548538-22548557 | None:intergenic | 15.0% |
| !! | TTTAATAATTTGATATGTAC+AGG | + | chr7.1:22548918-22548937 | MS.gene024170:intron | 15.0% |
| !!! | CATTCATTTGTTTTAATTAT+TGG | + | chr7.1:22548536-22548555 | MS.gene024170:intron | 15.0% |
| !!! | CTCATTTTTAATATTGTTAA+AGG | + | chr7.1:22549188-22549207 | MS.gene024170:intron | 15.0% |
| !!! | TTTTAATATTGTTAAAGGTT+GGG | + | chr7.1:22549193-22549212 | MS.gene024170:intron | 15.0% |
| !!! | TTTTTAATATTGTTAAAGGT+TGG | + | chr7.1:22549192-22549211 | MS.gene024170:intron | 15.0% |
| !! | ATGTCAATAGATTCAATTTA+GGG | + | chr7.1:22550583-22550602 | MS.gene024170:CDS | 20.0% |
| !! | TTTCTAATAACATGGTTATT+AGG | + | chr7.1:22549443-22549462 | MS.gene024170:intron | 20.0% |
| !!! | AAACATACATGAATTTTAGT+GGG | + | chr7.1:22548979-22548998 | MS.gene024170:CDS | 20.0% |
| !!! | AAATAATTGATAGTCTTTCT+CGG | + | chr7.1:22548767-22548786 | MS.gene024170:CDS | 20.0% |
| !!! | CTTTTTATTTTTTTAATGGC+AGG | + | chr7.1:22550494-22550513 | MS.gene024170:intron | 20.0% |
| !!! | TTGTTGTATTTCTAATAACA+TGG | + | chr7.1:22549435-22549454 | MS.gene024170:intron | 20.0% |
| ! | AAATACTTACCACTAGAATA+TGG | - | chr7.1:22549251-22549270 | None:intergenic | 25.0% |
| ! | AATTGAATCTATTGACATGA+TGG | - | chr7.1:22550581-22550600 | None:intergenic | 25.0% |
| ! | CATGTCAATAGATTCAATTT+AGG | + | chr7.1:22550582-22550601 | MS.gene024170:CDS | 25.0% |
| ! | CTAAAATTCATGTATGTTTG+AGG | - | chr7.1:22548978-22548997 | None:intergenic | 25.0% |
| ! | CTAAATATGTCAAGAAAACA+AGG | - | chr7.1:22549801-22549820 | None:intergenic | 25.0% |
| ! | TACAGATTGAAAAATGTGAT+TGG | + | chr7.1:22549899-22549918 | MS.gene024170:intron | 25.0% |
| ! | TATACTCTGATAAACAACTA+AGG | - | chr7.1:22550006-22550025 | None:intergenic | 25.0% |
| ! | TCCATAGATAAGAACAATTT+AGG | + | chr7.1:22550246-22550265 | MS.gene024170:intron | 25.0% |
| ! | TCCTAAATTGTTCTTATCTA+TGG | - | chr7.1:22550250-22550269 | None:intergenic | 25.0% |
| ! | TTACTTCATGAATAATGAGA+TGG | + | chr7.1:22549535-22549554 | MS.gene024170:intron | 25.0% |
| ! | TTTATGGATAATACAAAGAC+TGG | + | chr7.1:22549758-22549777 | MS.gene024170:intron | 25.0% |
| !! | AAGTTGCATTTTTACTTTGT+AGG | + | chr7.1:22550031-22550050 | MS.gene024170:intron | 25.0% |
| !! | ACAATTTAGGATTTAGTTTC+TGG | + | chr7.1:22550259-22550278 | MS.gene024170:intron | 25.0% |
| !! | CAAACATACATGAATTTTAG+TGG | + | chr7.1:22548978-22548997 | MS.gene024170:CDS | 25.0% |
| !! | CATTTTTACTTTGTAGGAAT+CGG | + | chr7.1:22550037-22550056 | MS.gene024170:intron | 25.0% |
| !! | GTTTGTGGAAATTTTTATGT+AGG | + | chr7.1:22549332-22549351 | MS.gene024170:intron | 25.0% |
| !! | TCTGAACTTGTATGATTTTA+TGG | + | chr7.1:22549742-22549761 | MS.gene024170:intron | 25.0% |
| !! | TTGTACTTAATCTGATTTTG+TGG | + | chr7.1:22548720-22548739 | MS.gene024170:intron | 25.0% |
| !!! | AACATACATGAATTTTAGTG+GGG | + | chr7.1:22548980-22548999 | MS.gene024170:CDS | 25.0% |
| AAACACTTTAAGTGCATGTT+TGG | - | chr7.1:22548682-22548701 | None:intergenic | 30.0% | |
| ACCAGTTATAGACTTCATAA+TGG | - | chr7.1:22549868-22549887 | None:intergenic | 30.0% | |
| AGCAAATTATAAGTTAGACC+AGG | + | chr7.1:22550335-22550354 | MS.gene024170:intron | 30.0% | |
| ATAAAGTGGAATATACTCCT+TGG | + | chr7.1:22548449-22548468 | MS.gene024170:CDS | 30.0% | |
| ATAATGAAAGTTCCTTCTAC+TGG | - | chr7.1:22548350-22548369 | None:intergenic | 30.0% | |
| ATACAATCAAAAGCCTTGAT+TGG | + | chr7.1:22548814-22548833 | MS.gene024170:CDS | 30.0% | |
| CAATGGAGATACTAATAAAG+TGG | + | chr7.1:22548435-22548454 | MS.gene024170:CDS | 30.0% | |
| CCAGTTATAGACTTCATAAT+GGG | - | chr7.1:22549867-22549886 | None:intergenic | 30.0% | |
| GATTCTGTTTAGATACAGTT+TGG | + | chr7.1:22549279-22549298 | MS.gene024170:intron | 30.0% | |
| TAATGAAAGTTCCTTCTACT+GGG | - | chr7.1:22548349-22548368 | None:intergenic | 30.0% | |
| TATATAGCGAAATGTAATGC+CGG | - | chr7.1:22549827-22549846 | None:intergenic | 30.0% | |
| TCAATGTTGCAATTAACCAT+TGG | - | chr7.1:22548892-22548911 | None:intergenic | 30.0% | |
| TTCTTGACATATTTAGAAGC+CGG | + | chr7.1:22549805-22549824 | MS.gene024170:intron | 30.0% | |
| TTGATATGTACAGGTTCTAT+TGG | + | chr7.1:22548927-22548946 | MS.gene024170:intron | 30.0% | |
| TTTCCACAAACTTAAAGTCA+AGG | - | chr7.1:22549323-22549342 | None:intergenic | 30.0% | |
| ! | ATCATTTTCCGTTCATTGTT+CGG | + | chr7.1:22548396-22548415 | MS.gene024170:CDS | 30.0% |
| ! | TTTCCTTGACTTTAAGTTTG+TGG | + | chr7.1:22549317-22549336 | MS.gene024170:intron | 30.0% |
| ! | TTTTGTGGATTCTCTATGTT+AGG | + | chr7.1:22548735-22548754 | MS.gene024170:intron | 30.0% |
| !! | GACTCATTAATTTGTAAACC+TGG | + | chr7.1:22549624-22549643 | MS.gene024170:intron | 30.0% |
| !! | GATGTTTTAAGTGAATAACG+AGG | - | chr7.1:22548373-22548392 | None:intergenic | 30.0% |
| !! | TGAAGCTTTAAAACACCATT+TGG | - | chr7.1:22549378-22549397 | None:intergenic | 30.0% |
| !!! | GTTTTAAAGCTTCAACCTAA+AGG | + | chr7.1:22549384-22549403 | MS.gene024170:CDS | 30.0% |
| AACCCTGGAAATAAATACCA+TGG | + | chr7.1:22548490-22548509 | MS.gene024170:CDS | 35.0% | |
| ACACTTGATAGAAGACTAGA+AGG | - | chr7.1:22550139-22550158 | None:intergenic | 35.0% | |
| ACTGGGATAGGTTAAAGATA+AGG | - | chr7.1:22548332-22548351 | None:intergenic | 35.0% | |
| AGAATTCTACATGTTACCCA+TGG | - | chr7.1:22549668-22549687 | None:intergenic | 35.0% | |
| AGTTACTTGAATCTTGCCAT+GGG | + | chr7.1:22549649-22549668 | MS.gene024170:intron | 35.0% | |
| CAACTGTCTAAATATTTGCC+TGG | - | chr7.1:22550356-22550375 | None:intergenic | 35.0% | |
| CAAGATTCAAGTAACTATCC+AGG | - | chr7.1:22549645-22549664 | None:intergenic | 35.0% | |
| CAGGCAAATATTTAGACAGT+TGG | + | chr7.1:22550354-22550373 | MS.gene024170:intron | 35.0% | |
| CCCATTATGAAGTCTATAAC+TGG | + | chr7.1:22549864-22549883 | MS.gene024170:intron | 35.0% | |
| GGATAGGTTAAAGATAAGGT+TGG | - | chr7.1:22548328-22548347 | None:intergenic | 35.0% | |
| GGTAATAAACCTGAAAACTG+TGG | + | chr7.1:22550402-22550421 | MS.gene024170:intron | 35.0% | |
| GTTCCACAGACAAATAACAA+TGG | + | chr7.1:22548418-22548437 | MS.gene024170:CDS | 35.0% | |
| TAGTTACTTGAATCTTGCCA+TGG | + | chr7.1:22549648-22549667 | MS.gene024170:intron | 35.0% | |
| TCAAAAGCCTTGATTGGAAT+AGG | + | chr7.1:22548820-22548839 | MS.gene024170:CDS | 35.0% | |
| TCTACAAAAGTTCAGTTCAG+TGG | + | chr7.1:22550096-22550115 | MS.gene024170:CDS | 35.0% | |
| TGCCATGGTATTTATTTCCA+GGG | - | chr7.1:22548495-22548514 | None:intergenic | 35.0% | |
| TGTTGCAATTAACCATTGGA+AGG | - | chr7.1:22548888-22548907 | None:intergenic | 35.0% | |
| TTAAAGCTTCAACCTAAAGG+TGG | + | chr7.1:22549387-22549406 | MS.gene024170:CDS | 35.0% | |
| TTAAATCCATAGTTCCAGGA+GGG | - | chr7.1:22550066-22550085 | None:intergenic | 35.0% | |
| TTAAGACCTTAGTGCTCAAT+GGG | + | chr7.1:22550550-22550569 | MS.gene024170:CDS | 35.0% | |
| ! | GAAAAATGTGATTGGCCATT+TGG | + | chr7.1:22549907-22549926 | MS.gene024170:CDS | 35.0% |
| !! | CATGAATTTTAGTGGGGAAT+CGG | + | chr7.1:22548986-22549005 | MS.gene024170:CDS | 35.0% |
| !! | GACTTCATAATGGGTATAAG+AGG | - | chr7.1:22549858-22549877 | None:intergenic | 35.0% |
| !! | GCTTTAAAACACCATTTGGA+AGG | - | chr7.1:22549374-22549393 | None:intergenic | 35.0% |
| !! | TCTCCATTGTTATTTGTCTG+TGG | - | chr7.1:22548424-22548443 | None:intergenic | 35.0% |
| !! | TTTGCTATTGAACCTTCCAA+TGG | + | chr7.1:22548873-22548892 | MS.gene024170:intron | 35.0% |
| AAAGTTCCTTCTACTGGGAT+AGG | - | chr7.1:22548344-22548363 | None:intergenic | 40.0% | |
| AATCACGAGAACCATCCAAA+TGG | - | chr7.1:22549925-22549944 | None:intergenic | 40.0% | |
| ACACACACACACACTGAAAT+TGG | + | chr7.1:22549058-22549077 | MS.gene024170:intron | 40.0% | |
| ACACACACTGAAATTGGTCA+TGG | + | chr7.1:22549064-22549083 | MS.gene024170:intron | 40.0% | |
| ACCTACAAAAGCAATAGGAG+GGG | + | chr7.1:22550381-22550400 | MS.gene024170:intron | 40.0% | |
| ACTCGATAATATGCAGCAAG+AGG | - | chr7.1:22549219-22549238 | None:intergenic | 40.0% | |
| CTTAAATCCATAGTTCCAGG+AGG | - | chr7.1:22550067-22550086 | None:intergenic | 40.0% | |
| CTTTAACCTATCCCAGTAGA+AGG | + | chr7.1:22548335-22548354 | MS.gene024170:CDS | 40.0% | |
| GACCTACAAAAGCAATAGGA+GGG | + | chr7.1:22550380-22550399 | MS.gene024170:intron | 40.0% | |
| GCTCTTAAATCCATAGTTCC+AGG | - | chr7.1:22550070-22550089 | None:intergenic | 40.0% | |
| GTGCCATGGTATTTATTTCC+AGG | - | chr7.1:22548496-22548515 | None:intergenic | 40.0% | |
| GTGGATTCTCTATGTTAGGT+TGG | + | chr7.1:22548739-22548758 | MS.gene024170:intron | 40.0% | |
| GTGTGACCTACAAAAGCAAT+AGG | + | chr7.1:22550376-22550395 | MS.gene024170:intron | 40.0% | |
| GTTAAACCCATTGAGCACTA+AGG | - | chr7.1:22550559-22550578 | None:intergenic | 40.0% | |
| GTTAAGACCTTAGTGCTCAA+TGG | + | chr7.1:22550549-22550568 | MS.gene024170:CDS | 40.0% | |
| TGACCTACAAAAGCAATAGG+AGG | + | chr7.1:22550379-22550398 | MS.gene024170:intron | 40.0% | |
| TTACATTGTGTCTAGTGCCA+TGG | - | chr7.1:22548510-22548529 | None:intergenic | 40.0% | |
| TTCAACCTAAAGGTGGACAT+GGG | + | chr7.1:22549394-22549413 | MS.gene024170:CDS | 40.0% | |
| ! | AATGTGATTGGCCATTTGGA+TGG | + | chr7.1:22549911-22549930 | MS.gene024170:CDS | 40.0% |
| ! | ATCTTAGTGCCACAGTTTTC+AGG | - | chr7.1:22550414-22550433 | None:intergenic | 40.0% |
| !! | CATAATGGGTATAAGAGGAG+AGG | - | chr7.1:22549853-22549872 | None:intergenic | 40.0% |
| !! | GATGAAACTAGCCTTCCAAA+TGG | + | chr7.1:22549360-22549379 | MS.gene024170:CDS | 40.0% |
| !! | GATTTTCCTCGACTTGCAAT+CGG | + | chr7.1:22549941-22549960 | MS.gene024170:CDS | 40.0% |
| !! | TATACTCCTTGGCTTGTTGT+TGG | + | chr7.1:22548460-22548479 | MS.gene024170:CDS | 40.0% |
| !!! | TGGAGAAGTACCAGTTTTGT+TGG | + | chr7.1:22548947-22548966 | MS.gene024170:CDS | 40.0% |
| AACTAACCGATTGCAAGTCG+AGG | - | chr7.1:22549950-22549969 | None:intergenic | 45.0% | |
| ACCACTAGAATATGGCGCAA+GGG | - | chr7.1:22549243-22549262 | None:intergenic | 45.0% | |
| CAGTTCAGTGGAAAGAAAGC+AGG | + | chr7.1:22550108-22550127 | MS.gene024170:CDS | 45.0% | |
| CTGTGGAACCGAACAATGAA+CGG | - | chr7.1:22548407-22548426 | None:intergenic | 45.0% | |
| CTTCAACCTAAAGGTGGACA+TGG | + | chr7.1:22549393-22549412 | MS.gene024170:CDS | 45.0% | |
| GATAGTCTTTCTCGGTCAGA+AGG | + | chr7.1:22548775-22548794 | MS.gene024170:CDS | 45.0% | |
| TACCACTAGAATATGGCGCA+AGG | - | chr7.1:22549244-22549263 | None:intergenic | 45.0% | |
| TGAGGTTTCGCCAACAAAAC+TGG | - | chr7.1:22548960-22548979 | None:intergenic | 45.0% | |
| ! | GTTGATGAGTCATTGGAGCA+AGG | + | chr7.1:22550516-22550535 | MS.gene024170:CDS | 45.0% |
| !! | ACCCCTCCTATTGCTTTTGT+AGG | - | chr7.1:22550385-22550404 | None:intergenic | 45.0% |
| !! | ATGGCAGGTTGATGAGTCAT+TGG | + | chr7.1:22550509-22550528 | MS.gene024170:intron | 45.0% |
| !!! | TTTTCTTTTTATTTTTTTAA+TGG | + | chr7.1:22550490-22550509 | MS.gene024170:intron | 5.0% |
| GCACGCACCTATTCCAATCA+AGG | - | chr7.1:22548830-22548849 | None:intergenic | 50.0% | |
| GTGGACATGGGCATCACAAT+GGG | + | chr7.1:22549406-22549425 | MS.gene024170:CDS | 50.0% | |
| TGATGCCCATGTCCACCTTT+AGG | - | chr7.1:22549402-22549421 | None:intergenic | 50.0% | |
| !! | CCTTGGCTTGTTGTTGGCTT+GGG | + | chr7.1:22548466-22548485 | MS.gene024170:CDS | 50.0% |
| !! | TCCTTGGCTTGTTGTTGGCT+TGG | + | chr7.1:22548465-22548484 | MS.gene024170:CDS | 50.0% |
| CCCAAGCCAACAACAAGCCA+AGG | - | chr7.1:22548469-22548488 | None:intergenic | 55.0% | |
| CGGAAACCCTCCTGGAACTA+TGG | + | chr7.1:22550057-22550076 | MS.gene024170:CDS | 55.0% | |
| GCCCTTGCGCCATATTCTAG+TGG | + | chr7.1:22549239-22549258 | MS.gene024170:CDS | 55.0% | |
| GGTGGACATGGGCATCACAA+TGG | + | chr7.1:22549405-22549424 | MS.gene024170:CDS | 55.0% | |
| GTAGGAATCGGAAACCCTCC+TGG | + | chr7.1:22550049-22550068 | MS.gene024170:intron | 55.0% | |
| !! | GTTGTTGGCTTGGGTAACCC+TGG | + | chr7.1:22548475-22548494 | MS.gene024170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 22548304 | 22550632 | 22548304 | ID=MS.gene024170 |
| chr7.1 | mRNA | 22548304 | 22550632 | 22548304 | ID=MS.gene024170.t1;Parent=MS.gene024170 |
| chr7.1 | exon | 22548304 | 22548525 | 22548304 | ID=MS.gene024170.t1.exon1;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22548304 | 22548525 | 22548304 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| chr7.1 | exon | 22548757 | 22548841 | 22548757 | ID=MS.gene024170.t1.exon2;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22548757 | 22548841 | 22548757 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| chr7.1 | exon | 22548940 | 22549007 | 22548940 | ID=MS.gene024170.t1.exon3;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22548940 | 22549007 | 22548940 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| chr7.1 | exon | 22549210 | 22549260 | 22549210 | ID=MS.gene024170.t1.exon4;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22549210 | 22549260 | 22549210 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| chr7.1 | exon | 22549354 | 22549427 | 22549354 | ID=MS.gene024170.t1.exon5;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22549354 | 22549427 | 22549354 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| chr7.1 | exon | 22549904 | 22549962 | 22549904 | ID=MS.gene024170.t1.exon6;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22549904 | 22549962 | 22549904 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| chr7.1 | exon | 22550053 | 22550129 | 22550053 | ID=MS.gene024170.t1.exon7;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22550053 | 22550129 | 22550053 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| chr7.1 | exon | 22550516 | 22550632 | 22550516 | ID=MS.gene024170.t1.exon8;Parent=MS.gene024170.t1 |
| chr7.1 | CDS | 22550516 | 22550632 | 22550516 | ID=cds.MS.gene024170.t1;Parent=MS.gene024170.t1 |
| Gene Sequence |
| Protein sequence |
