Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024629.t1 | XP_003626362.1 | 98 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 2.20E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024629.t1 | Q02610 | 92.1 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 5.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024629.t1 | B7FGV9 | 98.0 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 1.6e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71901 | MS.gene024629 | PPI |
| MS.gene011492 | MS.gene024629 | PPI |
| MS.gene024629 | MS.gene62862 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024629.t1 | MTR_7g114240 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 8.28e-105 | 296 |
| MS.gene024629.t1 | MTR_6g029200 | 70.199 | 151 | 44 | 1 | 2 | 151 | 8 | 158 | 1.56e-69 | 207 |
| MS.gene024629.t1 | MTR_7g114240 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.87e-68 | 203 |
| MS.gene024629.t1 | MTR_4g057240 | 69.014 | 142 | 43 | 1 | 9 | 150 | 63 | 203 | 1.75e-67 | 203 |
| MS.gene024629.t1 | MTR_6g029200 | 68.000 | 150 | 39 | 1 | 2 | 151 | 8 | 148 | 2.02e-65 | 196 |
| MS.gene024629.t1 | MTR_4g101820 | 34.234 | 111 | 65 | 2 | 13 | 123 | 165 | 267 | 1.08e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024629.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene024629.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene024629.t1 | AT2G28190 | 68.919 | 148 | 46 | 0 | 3 | 150 | 66 | 213 | 6.72e-71 | 213 |
| MS.gene024629.t1 | AT5G18100 | 64.667 | 150 | 53 | 0 | 2 | 151 | 8 | 157 | 3.17e-67 | 201 |
| MS.gene024629.t1 | AT5G18100 | 61.417 | 127 | 49 | 0 | 2 | 128 | 8 | 134 | 1.46e-52 | 163 |
| MS.gene024629.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 36 | 139 | 3.00e-12 | 61.6 |
| MS.gene024629.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 81 | 184 | 4.21e-12 | 62.0 |
| MS.gene024629.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 172 | 275 | 1.20e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGTTGTAGGTATTAT+TGG | 0.169884 | 7.4:+3018732 | MS.gene024629:intron |
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 7.4:+3017506 | MS.gene024629:CDS |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 7.4:+3017126 | MS.gene024629:CDS |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 7.4:+3017084 | MS.gene024629:CDS |
| GCCCTTCCTATGATTGAGTT+TGG | 0.330134 | 7.4:-3018033 | None:intergenic |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 7.4:-3017091 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 7.4:-3017470 | None:intergenic |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 7.4:+3016903 | MS.gene024629:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 7.4:+3017105 | MS.gene024629:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 7.4:+3017125 | MS.gene024629:CDS |
| ACTGGACCAAACTCAATCAT+AGG | 0.429060 | 7.4:+3018027 | MS.gene024629:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 7.4:-3017494 | None:intergenic |
| CTTCACCATTACTGACAATC+AGG | 0.444656 | 7.4:+3017693 | MS.gene024629:CDS |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 7.4:+3017156 | MS.gene024629:CDS |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 7.4:+3017455 | MS.gene024629:intron |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 7.4:-3018075 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 7.4:+3018066 | MS.gene024629:CDS |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 7.4:+3016954 | MS.gene024629:CDS |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 7.4:+3018067 | MS.gene024629:CDS |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 7.4:+3017530 | MS.gene024629:CDS |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 7.4:+3016944 | MS.gene024629:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 7.4:-3017154 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 7.4:+3017096 | MS.gene024629:CDS |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 7.4:-3017078 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 7.4:+3018394 | MS.gene024629:CDS |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 7.4:-3017114 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 7.4:-3017122 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 7.4:+3018403 | MS.gene024629:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 7.4:+3017072 | MS.gene024629:intron |
| GTAGGTATTATTGGCTTGCA+AGG | 0.540422 | 7.4:+3018741 | MS.gene024629:intron |
| TGTTCACAGATCCCTCTCAC+TGG | 0.549506 | 7.4:+3018009 | MS.gene024629:intron |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 7.4:+3016924 | MS.gene024629:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 7.4:+3017460 | MS.gene024629:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 7.4:+3016947 | MS.gene024629:CDS |
| GACCAAACTCAATCATAGGA+AGG | 0.559020 | 7.4:+3018031 | MS.gene024629:CDS |
| GTCAGTAATGGTGAAGCTTG+CGG | 0.567650 | 7.4:-3017686 | None:intergenic |
| ATTGAGTTTGGTCCAGTGAG+AGG | 0.575707 | 7.4:-3018021 | None:intergenic |
| TTGAGTTTGGTCCAGTGAGA+GGG | 0.579337 | 7.4:-3018020 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 7.4:+3017521 | MS.gene024629:CDS |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 7.4:+3016893 | None:intergenic |
| ACATACCTGATTGTCAGTAA+TGG | 0.594183 | 7.4:-3017698 | None:intergenic |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 7.4:+3017497 | MS.gene024629:CDS |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 7.4:+3016887 | None:intergenic |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 7.4:+3018072 | MS.gene024629:CDS |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 7.4:+3017127 | MS.gene024629:CDS |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 7.4:+3017467 | MS.gene024629:CDS |
| ACCAAACTCAATCATAGGAA+GGG | 0.632037 | 7.4:+3018032 | MS.gene024629:CDS |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 7.4:-3017119 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 7.4:+3016948 | MS.gene024629:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 7.4:-3017493 | None:intergenic |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 7.4:-3018070 | None:intergenic |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 7.4:-3017458 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 7.4:+3017128 | MS.gene024629:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 7.4:+3017478 | MS.gene024629:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 7.4:+3018406 | MS.gene024629:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 7.4:-3017082 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 7.4:-3017492 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 7.4:+3018421 | MS.gene024629:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAATAAAATCAAG+TGG | - | chr7.4:3017592-3017611 | None:intergenic | 15.0% |
| !! | ATTTCTAATGAATTATTCTA+GGG | + | chr7.4:3017747-3017766 | MS.gene024629:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | - | chr7.4:3017314-3017333 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | + | chr7.4:3017637-3017656 | MS.gene024629:intron | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | + | chr7.4:3017308-3017327 | MS.gene024629:intron | 15.0% |
| !! | AGATAACAATTAGAAAATGA+AGG | - | chr7.4:3018687-3018706 | None:intergenic | 20.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | + | chr7.4:3017953-3017972 | MS.gene024629:intron | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | + | chr7.4:3017746-3017765 | MS.gene024629:intron | 20.0% |
| !! | GATAACAATTAGAAAATGAA+GGG | - | chr7.4:3018686-3018705 | None:intergenic | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | - | chr7.4:3017396-3017415 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | - | chr7.4:3017811-3017830 | None:intergenic | 20.0% |
| !!! | GATTTTATTTTTTTTGTGAC+CGG | + | chr7.4:3017595-3017614 | MS.gene024629:intron | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | + | chr7.4:3017201-3017220 | MS.gene024629:intron | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | - | chr7.4:3017812-3017831 | None:intergenic | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | - | chr7.4:3017953-3017972 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | - | chr7.4:3017954-3017973 | None:intergenic | 20.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | - | chr7.4:3017188-3017207 | None:intergenic | 25.0% |
| ! | TGAAAACTGAATCTTGAATT+TGG | - | chr7.4:3018662-3018681 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | + | chr7.4:3017434-3017453 | MS.gene024629:intron | 25.0% |
| !! | TGTTTTCAGTAACAAATTCA+AGG | - | chr7.4:3018601-3018620 | None:intergenic | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | + | chr7.4:3018353-3018372 | MS.gene024629:intron | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | - | chr7.4:3018514-3018533 | None:intergenic | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | - | chr7.4:3017617-3017636 | None:intergenic | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | + | chr7.4:3017566-3017585 | MS.gene024629:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | + | chr7.4:3018475-3018494 | MS.gene024629:intron | 25.0% |
| AAAAATAAAATCAAGTGGCC+TGG | - | chr7.4:3017587-3017606 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | - | chr7.4:3017003-3017022 | None:intergenic | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | - | chr7.4:3018134-3018153 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | + | chr7.4:3018528-3018547 | MS.gene024629:intron | 30.0% | |
| AATAATACCTACAACAAACG+GGG | - | chr7.4:3018733-3018752 | None:intergenic | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | + | chr7.4:3018125-3018144 | MS.gene024629:intron | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | + | chr7.4:3017460-3017479 | MS.gene024629:CDS | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | - | chr7.4:3017261-3017280 | None:intergenic | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | + | chr7.4:3018126-3018145 | MS.gene024629:intron | 30.0% | |
| ATTTGTGACGATCACTTTAT+AGG | - | chr7.4:3018219-3018238 | None:intergenic | 30.0% | |
| CAATAATACCTACAACAAAC+GGG | - | chr7.4:3018734-3018753 | None:intergenic | 30.0% | |
| CCAATAATACCTACAACAAA+CGG | - | chr7.4:3018735-3018754 | None:intergenic | 30.0% | |
| GATTAAAAGTTGAAACTCTC+AGG | - | chr7.4:3017979-3017998 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | - | chr7.4:3017260-3017279 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | - | chr7.4:3017045-3017064 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | - | chr7.4:3018135-3018154 | None:intergenic | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | - | chr7.4:3017461-3017480 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | + | chr7.4:3017265-3017284 | MS.gene024629:intron | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | + | chr7.4:3017647-3017666 | MS.gene024629:intron | 30.0% |
| !! | TTGGAAACACTTTTTGTGTT+TGG | + | chr7.4:3018165-3018184 | MS.gene024629:intron | 30.0% |
| AACACAATTCATTCTCGACT+TGG | - | chr7.4:3017351-3017370 | None:intergenic | 35.0% | |
| AAGTGATCGTCACAAATTCA+AGG | + | chr7.4:3018222-3018241 | MS.gene024629:intron | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | - | chr7.4:3017701-3017720 | None:intergenic | 35.0% | |
| ACCAAACTCAATCATAGGAA+GGG | + | chr7.4:3018032-3018051 | MS.gene024629:CDS | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | + | chr7.4:3018223-3018242 | MS.gene024629:intron | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | + | chr7.4:3017796-3017815 | MS.gene024629:intron | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | - | chr7.4:3017094-3017113 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | + | chr7.4:3018488-3018507 | MS.gene024629:intron | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | + | chr7.4:3017521-3017540 | MS.gene024629:CDS | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | - | chr7.4:3018278-3018297 | None:intergenic | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | + | chr7.4:3018146-3018165 | MS.gene024629:intron | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr7.4:3017911-3017930 | MS.gene024629:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr7.4:3017912-3017931 | MS.gene024629:intron | 35.0% |
| !! | CCGTTTGTTGTAGGTATTAT+TGG | + | chr7.4:3018732-3018751 | MS.gene024629:intron | 35.0% |
| AATCCTAATGGTAAGGAGCA+CGG | + | chr7.4:3017467-3017486 | MS.gene024629:CDS | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | + | chr7.4:3017156-3017175 | MS.gene024629:CDS | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | + | chr7.4:3017054-3017073 | MS.gene024629:intron | 40.0% | |
| ACTGGACCAAACTCAATCAT+AGG | + | chr7.4:3018027-3018046 | MS.gene024629:CDS | 40.0% | |
| AGAACCTATGAGACAGTAAC+AGG | - | chr7.4:3018629-3018648 | None:intergenic | 40.0% | |
| AGGCACTATTGAGTATGAGT+CGG | + | chr7.4:3017221-3017240 | MS.gene024629:intron | 40.0% | |
| AGTTGACATGCAACCATTTG+TGG | - | chr7.4:3017157-3017176 | None:intergenic | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | + | chr7.4:3017168-3017187 | MS.gene024629:intron | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | + | chr7.4:3017506-3017525 | MS.gene024629:CDS | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | + | chr7.4:3017693-3017712 | MS.gene024629:CDS | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | + | chr7.4:3018031-3018050 | MS.gene024629:CDS | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | + | chr7.4:3017455-3017474 | MS.gene024629:intron | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | + | chr7.4:3018509-3018528 | MS.gene024629:intron | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | + | chr7.4:3016924-3016943 | MS.gene024629:CDS | 40.0% | |
| TGGTAAGTTTCAACAGCCTT+TGG | + | chr7.4:3016974-3016993 | MS.gene024629:intron | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr7.4:3017788-3017807 | None:intergenic | 40.0% | |
| TTGTCCTGTTACTGTCTCAT+AGG | + | chr7.4:3018622-3018641 | MS.gene024629:intron | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | - | chr7.4:3018073-3018092 | None:intergenic | 40.0% | |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | + | chr7.4:3016948-3016967 | MS.gene024629:CDS | 40.0% |
| ! | GTGAGAAGTTCTGACAATCA+TGG | + | chr7.4:3018571-3018590 | MS.gene024629:intron | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | + | chr7.4:3016947-3016966 | MS.gene024629:CDS | 40.0% |
| ! | TGGTACTATTAGCTTCTCTC+AGG | + | chr7.4:3016944-3016963 | MS.gene024629:CDS | 40.0% |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | + | chr7.4:3017096-3017115 | MS.gene024629:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr7.4:3017929-3017948 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr7.4:3017771-3017790 | MS.gene024629:intron | 40.0% |
| !! | GTAGGTATTATTGGCTTGCA+AGG | + | chr7.4:3018741-3018760 | MS.gene024629:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr7.4:3017770-3017789 | MS.gene024629:intron | 40.0% |
| AAGACTACTGGAAATGCTGG+TGG | + | chr7.4:3018406-3018425 | MS.gene024629:CDS | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | + | chr7.4:3017084-3017103 | MS.gene024629:CDS | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | - | chr7.4:3017085-3017104 | None:intergenic | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | + | chr7.4:3018403-3018422 | MS.gene024629:CDS | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | + | chr7.4:3018067-3018086 | MS.gene024629:CDS | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | - | chr7.4:3017495-3017514 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | - | chr7.4:3018024-3018043 | None:intergenic | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | + | chr7.4:3018394-3018413 | MS.gene024629:CDS | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | - | chr7.4:3017496-3017515 | None:intergenic | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | + | chr7.4:3018072-3018091 | MS.gene024629:CDS | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | - | chr7.4:3018036-3018055 | None:intergenic | 45.0% | |
| GGCACTATTGAGTATGAGTC+GGG | + | chr7.4:3017222-3017241 | MS.gene024629:intron | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | - | chr7.4:3018078-3018097 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | - | chr7.4:3017689-3017708 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr7.4:3017789-3017808 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | + | chr7.4:3018367-3018386 | MS.gene024629:intron | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | + | chr7.4:3017661-3017680 | MS.gene024629:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | - | chr7.4:3017666-3017685 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | - | chr7.4:3018023-3018042 | None:intergenic | 45.0% | |
| !! | ATCTGTTCCCCGTTTGTTGT+AGG | + | chr7.4:3018723-3018742 | MS.gene024629:intron | 45.0% |
| AATGTCACTGTCGGCGATGA+TGG | + | chr7.4:3017530-3017549 | MS.gene024629:CDS | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | - | chr7.4:3017081-3017100 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | + | chr7.4:3016954-3016973 | MS.gene024629:CDS | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | - | chr7.4:3017125-3017144 | None:intergenic | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | + | chr7.4:3018066-3018085 | MS.gene024629:CDS | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | - | chr7.4:3017122-3017141 | None:intergenic | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | + | chr7.4:3017128-3017147 | MS.gene024629:CDS | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | + | chr7.4:3017497-3017516 | MS.gene024629:CDS | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | - | chr7.4:3017497-3017516 | None:intergenic | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | + | chr7.4:3017127-3017146 | MS.gene024629:CDS | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | + | chr7.4:3017126-3017145 | MS.gene024629:CDS | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | + | chr7.4:3018370-3018389 | MS.gene024629:intron | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | + | chr7.4:3017125-3017144 | MS.gene024629:CDS | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | + | chr7.4:3018009-3018028 | MS.gene024629:intron | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | - | chr7.4:3016993-3017012 | None:intergenic | 50.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | - | chr7.4:3017145-3017164 | None:intergenic | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | - | chr7.4:3017117-3017136 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | - | chr7.4:3017473-3017492 | None:intergenic | 55.0% | |
| GTGAAGGCTGTGGCAGTTCT+TGG | + | chr7.4:3016903-3016922 | MS.gene024629:CDS | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | - | chr7.4:3017134-3017153 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | + | chr7.4:3017535-3017554 | MS.gene024629:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | + | chr7.4:3017072-3017091 | MS.gene024629:intron | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | + | chr7.4:3017141-3017160 | MS.gene024629:CDS | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | + | chr7.4:3018421-3018440 | MS.gene024629:CDS | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | + | chr7.4:3017105-3017124 | MS.gene024629:CDS | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | - | chr7.4:3017140-3017159 | None:intergenic | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | + | chr7.4:3017478-3017497 | MS.gene024629:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3016900 | 3018767 | 3016900 | ID=MS.gene024629 |
| chr7.4 | mRNA | 3016900 | 3018767 | 3016900 | ID=MS.gene024629.t1;Parent=MS.gene024629 |
| chr7.4 | exon | 3016900 | 3016975 | 3016900 | ID=MS.gene024629.t1.exon1;Parent=MS.gene024629.t1 |
| chr7.4 | CDS | 3016900 | 3016975 | 3016900 | ID=cds.MS.gene024629.t1;Parent=MS.gene024629.t1 |
| chr7.4 | exon | 3017076 | 3017177 | 3017076 | ID=MS.gene024629.t1.exon2;Parent=MS.gene024629.t1 |
| chr7.4 | CDS | 3017076 | 3017177 | 3017076 | ID=cds.MS.gene024629.t1;Parent=MS.gene024629.t1 |
| chr7.4 | exon | 3017456 | 3017551 | 3017456 | ID=MS.gene024629.t1.exon3;Parent=MS.gene024629.t1 |
| chr7.4 | CDS | 3017456 | 3017551 | 3017456 | ID=cds.MS.gene024629.t1;Parent=MS.gene024629.t1 |
| chr7.4 | exon | 3017683 | 3017714 | 3017683 | ID=MS.gene024629.t1.exon4;Parent=MS.gene024629.t1 |
| chr7.4 | CDS | 3017683 | 3017714 | 3017683 | ID=cds.MS.gene024629.t1;Parent=MS.gene024629.t1 |
| chr7.4 | exon | 3018018 | 3018093 | 3018018 | ID=MS.gene024629.t1.exon5;Parent=MS.gene024629.t1 |
| chr7.4 | CDS | 3018018 | 3018093 | 3018018 | ID=cds.MS.gene024629.t1;Parent=MS.gene024629.t1 |
| chr7.4 | exon | 3018389 | 3018442 | 3018389 | ID=MS.gene024629.t1.exon6;Parent=MS.gene024629.t1 |
| chr7.4 | CDS | 3018389 | 3018442 | 3018389 | ID=cds.MS.gene024629.t1;Parent=MS.gene024629.t1 |
| chr7.4 | exon | 3018745 | 3018767 | 3018745 | ID=MS.gene024629.t1.exon7;Parent=MS.gene024629.t1 |
| chr7.4 | CDS | 3018745 | 3018767 | 3018745 | ID=cds.MS.gene024629.t1;Parent=MS.gene024629.t1 |
| Gene Sequence |
| Protein sequence |
